Citrus Sinensis ID: 020239

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MRPGPAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLLLPLC
Secondary Structure (PSIPRED)
cccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHHHHHHcccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHcccHHHHHHHHHccccccHcHccccccccccccHHHHHHHcccHHHHHHHHHccccHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccHHHHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHccccccHHHHHHcccHHHHHHHHccccc
Coil and Loop (DISEMBL)
mrpgpavaracgRKEEVRYLLWIRLYpvrkisqtlympyiekvslfkgcssEFINQIVIRLheefflpgeviMEQGNVIDQLYFVCHgvlgkesnlrlkQVESDITFHIGKHEAELALRFnsaayhgdlyQLKGLIragadlnktdydgrsplhlatsrgyeDITLFLIQKgvdinikdkfgntplleaikcghDGVTSLLVKEgaslnvddagSFLCIAVARGDSDLLKRVLsngvdpnsrdydhrtplhvAASEGLYLMAKLLLEAGAsvftkdrwgntpldegrmcgnKNLIKLLEDAkctqlsefhycsQGMIGIAENLLLLPLC
Flexible Loop (DISEMBL)
mrpgpavaracgrkeevrYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNgvdpnsrdydhrTPLHVAASEGLYLMAKLLLEAGASVFTKDRwgntpldegrmcGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLLLPLC
Low Complexity Region (SEG)
MRPGPAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLLLPLC
Disordered region (IsUnstruct)
*********ACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGV******YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLLLP**
Disordered Region (DISOPRED)
MRPGPAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLLLPLC
Disordered Region (DISEMBL)
**********CGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLLLPLC
Disordered Region (DISPRO)
MRPGPAVARACGRKEEVRYLLWIRLYPVRKIS*TLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLLLPLC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRPGPAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLLLPLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	329	2.2.26 [Sep-21-2011]
Q9M8S6	828	Potassium channel SKOR OS	yes	no	0.583	0.231	0.753	2e-95
Q94A76	820	Potassium channel GORK OS	no	no	0.790	0.317	0.624	5e-94
Q653P0	858	Potassium channel KOR1 OS	yes	no	0.653	0.250	0.654	1e-83
Q7XUW4	719	Potassium channel KOR2 OS	no	no	0.650	0.297	0.579	2e-71
P0C550	935	Potassium channel AKT1 OS	N/A	no	0.671	0.236	0.334	2e-25
Q0JKV1	935	Potassium channel AKT1 OS	no	no	0.671	0.236	0.334	2e-25
Q8GXE6	888	Potassium channel AKT6 OS	no	no	0.489	0.181	0.341	1e-23
Q9SCX5	880	Probable potassium channe	no	no	0.613	0.229	0.338	1e-23
Q38998	857	Potassium channel AKT1 OS	no	no	0.583	0.224	0.325	5e-23
Q502K3	1071	Serine/threonine-protein	yes	no	0.534	0.164	0.329	3e-20

>sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1

 Score =  349 bits (896), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 165/219 (75%), Positives = 192/219 (87%)

Query: 91  GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR 150
           GKESN+R+KQ+ESDITFHI K EAELAL+ NSAA++GDLYQLK LIRAG D NKTDYDGR
Sbjct: 523 GKESNVRIKQLESDITFHISKQEAELALKLNSAAFYGDLYQLKSLIRAGGDPNKTDYDGR 582

Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
           SPLHLA SRGYEDITL+LIQ+ VD+NIKDK G+TPLLEAIK G+D V +LLVKEGA+LN+
Sbjct: 583 SPLHLAASRGYEDITLYLIQESVDVNIKDKLGSTPLLEAIKNGNDRVAALLVKEGATLNI 642

Query: 211 DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           ++AG+FLC  VA+GDSD LKR+LSNG+DPNS+DYDHRTPLHVAASEG Y++A  L+EA A
Sbjct: 643 ENAGTFLCTVVAKGDSDFLKRLLSNGIDPNSKDYDHRTPLHVAASEGFYVLAIQLVEASA 702

Query: 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 309
           +V  KDRWGNTPLDE   CGNK LIKLLEDAK +Q+S F
Sbjct: 703 NVLAKDRWGNTPLDEALGCGNKMLIKLLEDAKNSQISSF 741

Highly selective outward-rectifying potassium channel. Involved in potassium release into the xylem sap toward the shoots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by depolarization. The voltage-dependence of the channel is abolished by internal or external acidification. May interact with the cytoskeleton or with regulatory proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94A76|GORK_ARATH Potassium channel GORK OS=Arabidopsis thaliana GN=GORK PE=1 SV=2

 Score =  344 bits (883), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 173/277 (62%), Positives = 209/277 (75%), Gaps = 17/277 (6%)

Query: 31  ISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
           ISQ   +   E   L +     F N + I  H+     G  I+   N++++         
Sbjct: 463 ISQPFTVRVCELCHLLRLDKQSFSNILEIYFHD-----GRTIL--NNIMEE--------- 506

Query: 91  GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR 150
            KESN R+K++ESDI  HIGK EAELAL+ NSAA+ GD YQLK LIR+GAD NKTDYDGR
Sbjct: 507 -KESNDRIKKLESDIVIHIGKQEAELALKVNSAAFQGDFYQLKSLIRSGADPNKTDYDGR 565

Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
           SPLHLA  RGYEDITLFLIQ+GVD+N+KDKFG+TPL EA+K G +GV  LLVKEGAS N+
Sbjct: 566 SPLHLAACRGYEDITLFLIQEGVDVNLKDKFGHTPLFEAVKAGQEGVIGLLVKEGASFNL 625

Query: 211 DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           +D+G+FLC  VA+GDSD LKR+LS+G++PNS DYDHRTPLHVAASEGL+LMAK+L+EAGA
Sbjct: 626 EDSGNFLCTTVAKGDSDFLKRLLSSGMNPNSEDYDHRTPLHVAASEGLFLMAKMLVEAGA 685

Query: 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS 307
           SV +KDRWGN+PLDE R+CGNK LIKLLED K  Q S
Sbjct: 686 SVISKDRWGNSPLDEARLCGNKKLIKLLEDVKNAQSS 722

Major selective outward-rectifying potassium channel of the guard cell membrane. Involved in regulation of stomatal movements according to the water status. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by depolarization. Conductance of the channel is modulated in a potassium-dependent fashion. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q653P0|KOR1_ORYSJ Potassium channel KOR1 OS=Oryza sativa subsp. japonica GN=Os06g0250600 PE=2 SV=1

 Score =  309 bits (792), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 142/217 (65%), Positives = 179/217 (82%)

Query: 93  ESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSP 152
           E   R+KQ+ESDITFHIGK EAEL LR N+AA++GD++QLK LIRAGAD   TDYDGRSP
Sbjct: 541 EYGSRIKQLESDITFHIGKQEAELTLRVNNAAFYGDMHQLKSLIRAGADPKNTDYDGRSP 600

Query: 153 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 212
           LHLA  +G+ED+  FL+ +GVDI++ DKFGNTPLLEA+K GHD V +LL  +GA L++++
Sbjct: 601 LHLAACKGFEDVVQFLLHEGVDIDLSDKFGNTPLLEAVKQGHDRVATLLFSKGAKLSLEN 660

Query: 213 AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
           AGS LC AVARGD+D ++R L+ G DPN+RDYDHR PLH+AA+EGLYLMAKLL++AGASV
Sbjct: 661 AGSHLCTAVARGDTDFVRRALAYGGDPNARDYDHRAPLHIAAAEGLYLMAKLLVDAGASV 720

Query: 273 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 309
           F  DRWG TPLDEGR CG++ +++LLE AK  +LS +
Sbjct: 721 FATDRWGTTPLDEGRRCGSRTMVQLLEAAKSGELSRY 757

Probable outward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XUW4|KOR2_ORYSJ Potassium channel KOR2 OS=Oryza sativa subsp. japonica GN=Os04g0445000 PE=2 SV=2

 Score =  270 bits (689), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/214 (57%), Positives = 167/214 (78%)

Query: 91  GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR 150
           GKE+  + KQ+ESDIT+ + K E+EL L  N+AAYHGD+++LK LI AGAD +K+DYDGR
Sbjct: 503 GKETESKRKQLESDITYLLAKQESELVLGVNNAAYHGDIFRLKSLISAGADPSKSDYDGR 562

Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
           + LH+A  RGYE+I  FLIQ+G ++N  D+FGN+PLL+A+K GHD +TSLLV+ GA LN+
Sbjct: 563 TALHIAALRGYENIVRFLIQRGANVNSIDRFGNSPLLQAVKSGHDRITSLLVEHGAILNL 622

Query: 211 DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           +DAG +LC  V  G  DLLK++L  G+ PN R+YD RTPLH+AA+EGL+L+A  L+E+GA
Sbjct: 623 EDAGGYLCRVVRGGRIDLLKKLLRFGISPNCRNYDQRTPLHIAAAEGLHLVASTLIESGA 682

Query: 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT 304
            +  KDRWGNTPLDEGR C +K L+++LE A+  
Sbjct: 683 DIQAKDRWGNTPLDEGRRCSSKPLVRILEQARTV 716

Probable outward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C550|AKT1_ORYSI Potassium channel AKT1 OS=Oryza sativa subsp. indica GN=AKT1 PE=2 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 109/221 (49%)

Query: 92  KESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRS 151
           ++ N  +  V  +I   + +   +L +    A   GD + L  L++ G D N++D DG +
Sbjct: 542 QKENSVMAGVVKEIESMLARGNLDLPITLCFAVTRGDDFLLHQLLKRGMDPNESDNDGHT 601

Query: 152 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 211
            LH+A S+G E     L++ G D N +D  G  PL EA+   H  V  LLV+ GA L+  
Sbjct: 602 ALHIAASKGNEQCVRLLLEYGADPNARDSEGKVPLWEALCEKHAAVVQLLVEGGADLSSG 661

Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
           D G + CIAV   D++LL  ++  G D N    D  T LH A  +G   MA+LLLE GA 
Sbjct: 662 DTGLYACIAVEESDTELLNDIIHYGGDVNRARRDGTTALHRAVCDGNVQMAELLLEHGAD 721

Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYC 312
           +  +D  G TP       G+ ++  L    K    S  H+ 
Sbjct: 722 IDKQDGNGWTPRALAEQQGHDDIQLLFRSRKAATASGHHHV 762

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0JKV1|AKT1_ORYSJ Potassium channel AKT1 OS=Oryza sativa subsp. japonica GN=AKT1 PE=2 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 109/221 (49%)

Query: 92  KESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRS 151
           ++ N  +  V  +I   + +   +L +    A   GD + L  L++ G D N++D DG +
Sbjct: 542 QKENSVMAGVVKEIESMLARGNLDLPITLCFAVTRGDDFLLHQLLKRGMDPNESDNDGHT 601

Query: 152 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 211
            LH+A S+G E     L++ G D N +D  G  PL EA+   H  V  LLV+ GA L+  
Sbjct: 602 ALHIAASKGNEQCVRLLLEYGADPNARDSEGKVPLWEALCEKHAAVVQLLVEGGADLSSG 661

Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
           D G + CIAV   D++LL  ++  G D N    D  T LH A  +G   MA+LLLE GA 
Sbjct: 662 DTGLYACIAVEESDTELLNDIIHYGGDVNRARRDGTTALHRAVCDGNVQMAELLLEHGAD 721

Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYC 312
           +  +D  G TP       G+ ++  L    K    S  H+ 
Sbjct: 722 IDKQDGNGWTPRALAEQQGHDDIQLLFRSRKAATASGHHHV 762

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May be a major salt-sensitive potassium channel in roots.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GXE6|AKT6_ARATH Potassium channel AKT6 OS=Arabidopsis thaliana GN=AKT6 PE=1 SV=2

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 105/208 (50%)

Query: 98  LKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLAT 157
           +K V +D    + + + +L L    AA  GD   L  L+R G+  N+ D DGR+ LH+A 
Sbjct: 526 MKGVLADTEHMLAQGKMDLPLSLCFAAARGDDLLLHQLLRRGSSPNEMDKDGRTALHIAA 585

Query: 158 SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL 217
           S+G     + L++ G D NI+D  GN PL EAI   H  +  LL + GA L++D    F 
Sbjct: 586 SKGSHYCVVLLLEHGADPNIRDSEGNVPLWEAIIGRHREIAKLLAENGAKLSLDSVSYFS 645

Query: 218 CIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 277
            +AV +   D LK ++  G D    D +  T LH A SEG   + K LL+ GA +   D 
Sbjct: 646 GLAVEKNCLDALKDIIKYGGDVTLPDGNGTTALHRAVSEGHLEIVKFLLDQGADLDWPDS 705

Query: 278 WGNTPLDEGRMCGNKNLIKLLEDAKCTQ 305
           +G TP       GN+ +  L  + +  +
Sbjct: 706 YGWTPRGLADHQGNEEIKTLFHNHRPVE 733

Highly selective inward-rectifying potassium channel that could mediate potassium uptake in the pollen membrane. Plays an important role in pollen tube development. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCX5|AKT5_ARATH Probable potassium channel AKT5 OS=Arabidopsis thaliana GN=AKT5 PE=2 SV=2

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/204 (33%), Positives = 112/204 (54%), Gaps = 2/204 (0%)

Query: 102 ESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY 161
           E+++    GK +  L+L F  AA  GD   L  L++ G++ N+TD +GR+ LH+A S+G 
Sbjct: 530 ETELMLAQGKMDLPLSLCF--AAARGDDLLLHQLLKRGSNPNETDKNGRTALHIAASKGS 587

Query: 162 EDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAV 221
           +   + L++ G D NI+D  G+ PL EAI   H+    LL + GA+L+ D  G F C+AV
Sbjct: 588 QYCVVLLLEHGADPNIRDSEGSVPLWEAIIGRHEENAKLLSENGATLSFDTVGYFSCLAV 647

Query: 222 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 281
            + + + LK ++  G D +  D +  T LH A SEG   + + LLE GA +   D +G T
Sbjct: 648 GQNNLNALKDIVKYGGDISLSDVNGTTALHRAVSEGNLEIVQFLLEKGADMDKPDVYGWT 707

Query: 282 PLDEGRMCGNKNLIKLLEDAKCTQ 305
                   G++++  L  + +  +
Sbjct: 708 ARALAEHQGHEDIKALFYNQRPVE 731

Probable potassium channel. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38998|AKT1_ARATH Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2

 Score =  108 bits (270), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 106/203 (52%)

Query: 98  LKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLAT 157
           +  V  +I   + + + +L L    AA   D   L  L++ G D N++D +GR+PLH+A 
Sbjct: 500 MTNVLLEIENMLARGKMDLPLNLCFAAIREDDLLLHQLLKRGLDPNESDNNGRTPLHIAA 559

Query: 158 SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL 217
           S+G  +  L L++   D N +D  G+ PL EA+  GH+ V  +L++ G++++  D G F 
Sbjct: 560 SKGTLNCVLLLLEYHADPNCRDAEGSVPLWEAMVEGHEKVVKVLLEHGSTIDAGDVGHFA 619

Query: 218 CIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 277
           C A  +G+  LLK ++ +G D         + LH A  E    M K LLE GA V  +D 
Sbjct: 620 CTAAEQGNLKLLKEIVLHGGDVTRPRATGTSALHTAVCEENIEMVKYLLEQGADVNKQDM 679

Query: 278 WGNTPLDEGRMCGNKNLIKLLED 300
            G TP D     G++++  L  +
Sbjct: 680 HGWTPRDLAEQQGHEDIKALFRE 702

Highly selective inward-rectifying potassium channel that mediate potassium uptake by plant roots in response to low K(+) conditions, by a calcium-, CBL-, and CIPK-dependent pathway. Involved in the stomatal regulation by monitoring the turgor pressure in guard cells. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q502K3|ANR52_DANRE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C OS=Danio rerio GN=ankrd52 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/179 (32%), Positives = 101/179 (56%), Gaps = 3/179 (1%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AAY G L  +K L+  G+D +  D  G +PLH A + G+ D+  +L++ G +I+  + FG
Sbjct: 180 AAYLGHLEVVKLLVSQGSDKSCKDKRGYTPLHAAAASGHVDVVKYLLRNGAEIDEPNAFG 239

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI---AVARGDSDLLKRVLSNGVDP 239
           NT L  A   G + V + LV  GA++N  +   +  +   AV+   +  L+ +++NG D 
Sbjct: 240 NTALHVACYTGQEAVANELVNRGANVNQPNHRGYTPLHLAAVSTNGALCLELLVNNGADV 299

Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           N +  + ++PLH+AA  G +  +++L++ G  +   DR+GNTPL      G++ LI  L
Sbjct: 300 NMQSKEGKSPLHMAAIHGRFTRSQILIQNGGEIDCVDRYGNTPLHVAAKYGHELLISTL 358

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
224065090	841	predicted protein [Populus trichocarpa]	0.674	0.263	0.852	1e-108
224079588	821	predicted protein [Populus trichocarpa]	0.674	0.270	0.843	1e-106
255585584	445	Potassium channel SKOR, putative [Ricinu	0.665	0.492	0.840	1e-103
147777957	559	hypothetical protein VITISV_022830 [Viti	0.680	0.400	0.803	1e-102
225451365	794	PREDICTED: potassium channel SKOR [Vitis	0.674	0.279	0.799	1e-101
356552003	850	PREDICTED: potassium channel SKOR-like [	0.705	0.272	0.764	1e-100
356499077	849	PREDICTED: potassium channel SKOR-like [	0.705	0.273	0.756	3e-99
449445216	828	PREDICTED: potassium channel SKOR-like [	0.723	0.287	0.724	7e-99
449479935	828	PREDICTED: potassium channel SKOR-like [	0.723	0.287	0.724	7e-99
56744193	827	potassium channel TORK1 [Nicotiana tabac	0.686	0.273	0.743	4e-95

>gi|224065090|ref|XP_002301665.1| predicted protein [Populus trichocarpa] gi|222843391|gb|EEE80938.1| predicted protein [Populus trichocarpa]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 191/224 (85%), Positives = 204/224 (91%)

Query: 91  GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR 150
           GKESNLR KQ+ESDITFHIGK EAELALR NSAAYHGDLYQLKG IRAGAD N+TDYDGR
Sbjct: 532 GKESNLRDKQLESDITFHIGKQEAELALRVNSAAYHGDLYQLKGFIRAGADPNRTDYDGR 591

Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
           SPLHLA SRGYEDITLFLIQ+GVDINIKDKFGNTPLLEAIK GHD V SLL K+GA LN+
Sbjct: 592 SPLHLAASRGYEDITLFLIQEGVDINIKDKFGNTPLLEAIKNGHDRVESLLFKQGAILNI 651

Query: 211 DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           DDAGS LC AVARGDSD LKR+LSNG+DPNS+DYDHRTPLHVAASEGLYLMAKLL+EAGA
Sbjct: 652 DDAGSVLCRAVARGDSDFLKRILSNGIDPNSKDYDHRTPLHVAASEGLYLMAKLLIEAGA 711

Query: 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQ 314
           SVF+KDRWGNTPLDEGRMCGNK LIKLLE+AK +Q  EFHY + 
Sbjct: 712 SVFSKDRWGNTPLDEGRMCGNKKLIKLLEEAKSSQKLEFHYSTH 755

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079588|ref|XP_002305894.1| predicted protein [Populus trichocarpa] gi|222848858|gb|EEE86405.1| predicted protein [Populus trichocarpa]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 189/224 (84%), Positives = 203/224 (90%)

Query: 91  GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR 150
           GKESNL+ KQ+ESDITFHIGK EAELALR NS AYHGDLYQLKGLIRAGAD N+TDYDGR
Sbjct: 520 GKESNLQYKQLESDITFHIGKQEAELALRVNSTAYHGDLYQLKGLIRAGADPNRTDYDGR 579

Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
           SPLHLA SRGYED TLFLIQ+GVDINIKDKFGNTPLLEAIK GHD V SLL ++GA LN+
Sbjct: 580 SPLHLAASRGYEDTTLFLIQEGVDINIKDKFGNTPLLEAIKNGHDRVASLLSEQGAILNI 639

Query: 211 DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           DDAGS LC AVARGDSD LKRVLSNG+DPNS+DYDHRTPLHVAASEGLYLMAKLL+EAGA
Sbjct: 640 DDAGSVLCRAVARGDSDFLKRVLSNGIDPNSKDYDHRTPLHVAASEGLYLMAKLLIEAGA 699

Query: 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQ 314
           SVF+KDRWGNTPL EGR+CGNKNLIKLLE+AK +Q  EFHY S 
Sbjct: 700 SVFSKDRWGNTPLVEGRICGNKNLIKLLEEAKSSQKLEFHYASH 743

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255585584|ref|XP_002533481.1| Potassium channel SKOR, putative [Ricinus communis] gi|223526674|gb|EEF28913.1| Potassium channel SKOR, putative [Ricinus communis]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/219 (84%), Positives = 199/219 (90%)

Query: 91  GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR 150
           GKES+LR KQ+ESDITFHIGK EAELALR NSAAYHGDLYQLKG +RAGAD N+TDYDGR
Sbjct: 137 GKESSLRDKQLESDITFHIGKQEAELALRVNSAAYHGDLYQLKGFVRAGADPNRTDYDGR 196

Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
           SPLHLA SRGYEDI  FLIQ+GVDINIKDKFGNTPLLEAIK GHD V SLLVKEGA L +
Sbjct: 197 SPLHLAASRGYEDIACFLIQEGVDINIKDKFGNTPLLEAIKSGHDHVASLLVKEGAELRM 256

Query: 211 DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           DDAGSFLC  V +GDSDLL+R+LSNG++PNS+DYDHRTPLHVAASEGLY+MAKLLLEAGA
Sbjct: 257 DDAGSFLCSTVLKGDSDLLRRILSNGINPNSKDYDHRTPLHVAASEGLYMMAKLLLEAGA 316

Query: 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 309
           SV +KDRWG TPLDEGR+ GNKNLIKLLEDAK TQLSEF
Sbjct: 317 SVCSKDRWGKTPLDEGRISGNKNLIKLLEDAKSTQLSEF 355

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777957|emb|CAN64951.1| hypothetical protein VITISV_022830 [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 180/224 (80%), Positives = 198/224 (88%)

Query: 91  GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR 150
           GKESNLR+KQ+ESDITFHIG+ EAELALR NSA+YHGDLYQLK LIRAGAD NKTDYDGR
Sbjct: 251 GKESNLRVKQLESDITFHIGRQEAELALRVNSASYHGDLYQLKSLIRAGADPNKTDYDGR 310

Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
           SPLHLA++RG+EDI  FLIQ+GVD+NI D FGNTPLLEAIK  HD V SLLV +GA L +
Sbjct: 311 SPLHLASARGFEDIVTFLIQEGVDVNISDNFGNTPLLEAIKNAHDRVASLLVNKGALLKI 370

Query: 211 DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           DDAG FLC  +ARGDSD LKR+LSNG+DPNS+DYDHRTPLHVAASEGLY MAKLLLEAGA
Sbjct: 371 DDAGGFLCATIARGDSDFLKRILSNGIDPNSKDYDHRTPLHVAASEGLYFMAKLLLEAGA 430

Query: 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQ 314
           SVF+KDRWGNTPLDEG  CGNKNL+KLLEDAK  QLSEF  CS+
Sbjct: 431 SVFSKDRWGNTPLDEGWKCGNKNLMKLLEDAKVAQLSEFPDCSR 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451365|ref|XP_002262949.1| PREDICTED: potassium channel SKOR [Vitis vinifera] gi|296087079|emb|CBI33453.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/224 (79%), Positives = 197/224 (87%)

Query: 91  GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR 150
           GKESNLR+KQ+ESDITFHIG+ EAELALR NSA+YHGDLYQLK LIRAGAD NKTDYDGR
Sbjct: 486 GKESNLRVKQLESDITFHIGRQEAELALRVNSASYHGDLYQLKSLIRAGADPNKTDYDGR 545

Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
           SPLHLA++RG+EDI  FLIQ+GVD+NI D FGNTPLLEAIK  HD V SLLV +GA L +
Sbjct: 546 SPLHLASARGFEDIVTFLIQEGVDVNISDNFGNTPLLEAIKNAHDRVASLLVNKGALLKI 605

Query: 211 DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           DDAG FLC  +ARGDSD LKR+LSNG+DPNS+DYDHRTPLHVAASEGLY MAKLLLEA A
Sbjct: 606 DDAGGFLCATIARGDSDFLKRILSNGIDPNSKDYDHRTPLHVAASEGLYFMAKLLLEARA 665

Query: 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQ 314
           SVF+KDRWGNTPLDEG  CGNKNL+KLLEDAK  QLSEF  CS+
Sbjct: 666 SVFSKDRWGNTPLDEGWKCGNKNLMKLLEDAKVAQLSEFPDCSR 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552003|ref|XP_003544361.1| PREDICTED: potassium channel SKOR-like [Glycine max]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/238 (76%), Positives = 206/238 (86%), Gaps = 6/238 (2%)

Query: 77  NVIDQLYFVCHGVL-----GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQ 131
           N++D  ++    VL     GKES  R KQ+ESDITFHIGK EAELAL+ N+AA++GDLYQ
Sbjct: 528 NILDIYFYDGRKVLNNLLEGKES-FRDKQLESDITFHIGKQEAELALKVNNAAFNGDLYQ 586

Query: 132 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 191
           LKGLIRAGAD NKTDYDGRSPLHLA SRGYEDITLFLIQ+ VD+NIKD FGNTPLLEA+K
Sbjct: 587 LKGLIRAGADPNKTDYDGRSPLHLAASRGYEDITLFLIQERVDVNIKDNFGNTPLLEAVK 646

Query: 192 CGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH 251
            GHD V SLLV+EGAS+ +++AGSFLC AVARGDSD LKR+LSNG+DPN +DYD+R+PLH
Sbjct: 647 NGHDRVASLLVREGASMKIENAGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRSPLH 706

Query: 252 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 309
           +AA+EGLY MAKLLLE GASVFTKDRWGNTPLDE RMCGNKNLIKLLEDAK  QLSEF
Sbjct: 707 IAAAEGLYFMAKLLLEGGASVFTKDRWGNTPLDEARMCGNKNLIKLLEDAKSAQLSEF 764

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499077|ref|XP_003518370.1| PREDICTED: potassium channel SKOR-like [Glycine max]

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 180/238 (75%), Positives = 206/238 (86%), Gaps = 6/238 (2%)

Query: 77  NVIDQLYFVCHGVL-----GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQ 131
           N++D  ++    VL     GKES  R KQ+ESDITFH+GK EAELAL+ NSAA++GD+YQ
Sbjct: 527 NILDIYFYDGRKVLYNLLEGKES-FRDKQLESDITFHLGKQEAELALKVNSAAFNGDMYQ 585

Query: 132 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 191
           LKGLIRAGAD NK DYDGRSPLHLA SRGYEDIT+FLIQ+ VD+NI D FGNTPLLEA+K
Sbjct: 586 LKGLIRAGADPNKADYDGRSPLHLAASRGYEDITIFLIQERVDVNIIDNFGNTPLLEAVK 645

Query: 192 CGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH 251
            GHD V SLLVKEGAS+ +++AGSFLC AVARGDSD LKR+LSNG+DPN +DYD+R+PLH
Sbjct: 646 NGHDRVASLLVKEGASMKIENAGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRSPLH 705

Query: 252 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 309
           VAA+EGLY MAKLLLEAGASVFT+DRWGNTPLDE RMCGNKNLIKLLEDAK +QLSEF
Sbjct: 706 VAAAEGLYFMAKLLLEAGASVFTRDRWGNTPLDEARMCGNKNLIKLLEDAKSSQLSEF 763

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445216|ref|XP_004140369.1| PREDICTED: potassium channel SKOR-like [Cucumis sativus]

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 176/243 (72%), Positives = 209/243 (86%), Gaps = 5/243 (2%)

Query: 77  NVIDQLYFVCHGVL-----GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQ 131
           N++D  ++    +L     GKE+NLR+KQ+ESDITFHIGK EAELAL+ NSAAYHGDLYQ
Sbjct: 503 NILDIYFYDGRKILNNLLEGKETNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQ 562

Query: 132 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 191
           LKGL+RAGAD NKTDYDGRSPLHLA SRG+EDI +FLIQ+GV+I++KD FGNTPL+EAIK
Sbjct: 563 LKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQEGVNIDLKDNFGNTPLMEAIK 622

Query: 192 CGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH 251
            G+D V  LL KEGASL VD+ GSFLC AV+RGDSDL+KR+L  G+DPNS+DYD RTPLH
Sbjct: 623 NGNDQVAVLLSKEGASLKVDNPGSFLCTAVSRGDSDLVKRLLCYGIDPNSKDYDSRTPLH 682

Query: 252 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHY 311
           +A SEGL LMAKLLLE+GASVF+KDRWGNTPLDEGR+CGNKN++KLLE+AK +QLSE  Y
Sbjct: 683 IAVSEGLTLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKNMLKLLEEAKASQLSESPY 742

Query: 312 CSQ 314
            S+
Sbjct: 743 SSR 745

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479935|ref|XP_004155751.1| PREDICTED: potassium channel SKOR-like [Cucumis sativus]

 Score =  366 bits (940), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 176/243 (72%), Positives = 209/243 (86%), Gaps = 5/243 (2%)

Query: 77  NVIDQLYFVCHGVL-----GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQ 131
           N++D  ++    +L     GKE+NLR+KQ+ESDITFHIGK EAELAL+ NSAAYHGDLYQ
Sbjct: 503 NILDIYFYDGRKILNNLLEGKETNLRVKQLESDITFHIGKQEAELALKVNSAAYHGDLYQ 562

Query: 132 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 191
           LKGL+RAGAD NKTDYDGRSPLHLA SRG+EDI +FLIQ+GV+I++KD FGNTPL+EAIK
Sbjct: 563 LKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQEGVNIDLKDNFGNTPLMEAIK 622

Query: 192 CGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH 251
            G+D V  LL KEGASL VD+ GSFLC AV+RGDSDL+KR+L  G+DPNS+DYD RTPLH
Sbjct: 623 NGNDQVAVLLSKEGASLKVDNPGSFLCTAVSRGDSDLVKRLLCYGIDPNSKDYDSRTPLH 682

Query: 252 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHY 311
           +A SEGL LMAKLLLE+GASVF+KDRWGNTPLDEGR+CGNKN++KLLE+AK +QLSE  Y
Sbjct: 683 IAVSEGLTLMAKLLLESGASVFSKDRWGNTPLDEGRICGNKNMLKLLEEAKASQLSESPY 742

Query: 312 CSQ 314
            S+
Sbjct: 743 SSR 745

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56744193|dbj|BAD81036.1| potassium channel TORK1 [Nicotiana tabacum]

 Score =  354 bits (908), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 171/230 (74%), Positives = 196/230 (85%), Gaps = 4/230 (1%)

Query: 91  GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR 150
           GK+S+LR+KQVESDITFHIGK EAELAL+ NSAAYHGDL+QLKGLIRAGAD NK DYDGR
Sbjct: 521 GKDSDLRVKQVESDITFHIGKQEAELALKVNSAAYHGDLHQLKGLIRAGADPNKKDYDGR 580

Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
           SPLHLA SRGYEDI+LFLIQ+GVD+N  D F  TPL EAIK GHD V SLLVKEGA L +
Sbjct: 581 SPLHLAASRGYEDISLFLIQEGVDLNASDNFDTTPLFEAIKNGHDRVASLLVKEGAFLKI 640

Query: 211 DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           ++AGSFLC+ VA+GDSDLL+R+LSNG+DPNS+DYDHRTPLHVAAS+GL+ MA+LLL AGA
Sbjct: 641 ENAGSFLCMLVAKGDSDLLRRLLSNGIDPNSKDYDHRTPLHVAASQGLFAMARLLLGAGA 700

Query: 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF----HYCSQGM 316
           SVF+KDRWGNTP DE R+ GN  L KLLE+AK  Q+SEF    H  S+ M
Sbjct: 701 SVFSKDRWGNTPFDEARLSGNNQLAKLLEEAKSAQISEFPIAPHEISEKM 750

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
TAIR|locus:2075442	828	SKOR "STELAR K+ outward rectif	0.747	0.297	0.673	4.3e-94
TAIR|locus:2169866	820	GORK "gated outwardly-rectifyi	0.656	0.263	0.745	4.8e-93
TAIR|locus:2127866	880	KT5 "K+ transporter 5" [Arabid	0.541	0.202	0.372	4.9e-23
TAIR|locus:2043839	857	KT1 "AT2G26650" [Arabidopsis t	0.723	0.277	0.317	6e-23
ZFIN|ZDB-GENE-050112-1	226	psmd10 "proteasome (prosome, m	0.525	0.765	0.372	1.9e-21
UNIPROTKB|E2RTI6	765	ANKK1 "Uncharacterized protein	0.793	0.341	0.273	4.2e-21
WB|WBGene00007756	715	C27A7.5 [Caenorhabditis elegan	0.580	0.267	0.348	4.7e-21
ZFIN|ZDB-GENE-050522-247	1071	ankrd52a "ankyrin repeat domai	0.534	0.164	0.329	7.3e-21
ZFIN|ZDB-GENE-070820-14	665	aspg "asparaginase homolog (S.	0.492	0.243	0.363	4.9e-20
ASPGD|ASPL0000062824	1030	AN1130 [Emericella nidulans (t	0.544	0.173	0.326	4.9e-20

TAIR|locus:2075442 SKOR "STELAR K+ outward rectifier" [Arabidopsis thaliana (taxid:3702)]

 Score = 873 (312.4 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
 Identities = 171/254 (67%), Positives = 208/254 (81%)

Query:    58 VIRLHEEFFLPG-EVIMEQGN-VIDQLYFVCHGVLGKESNLRLKQVESDITFHIGKHEAE 115
             ++RL ++ F+   E+    G  +++ L      + GKESN+R+KQ+ESDITFHI K EAE
Sbjct:   494 ILRLDKQSFMNILEIFFHDGRRILNNL------LEGKESNVRIKQLESDITFHISKQEAE 547

Query:   116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 175
             LAL+ NSAA++GDLYQLK LIRAG D NKTDYDGRSPLHLA SRGYEDITL+LIQ+ VD+
Sbjct:   548 LALKLNSAAFYGDLYQLKSLIRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQESVDV 607

Query:   176 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSN 235
             NIKDK G+TPLLEAIK G+D V +LLVKEGA+LN+++AG+FLC  VA+GDSD LKR+LSN
Sbjct:   608 NIKDKLGSTPLLEAIKNGNDRVAALLVKEGATLNIENAGTFLCTVVAKGDSDFLKRLLSN 667

Query:   236 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 295
             G+DPNS+DYDHRTPLHVAASEG Y++A  L+EA A+V  KDRWGNTPLDE   CGNK LI
Sbjct:   668 GIDPNSKDYDHRTPLHVAASEGFYVLAIQLVEASANVLAKDRWGNTPLDEALGCGNKMLI 727

Query:   296 KLLEDAKCTQLSEF 309
             KLLEDAK +Q+S F
Sbjct:   728 KLLEDAKNSQISSF 741

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA;IMP;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0015271 "outward rectifier potassium channel activity" evidence=IDA

TAIR|locus:2169866 GORK "gated outwardly-rectifying K+ channel" [Arabidopsis thaliana (taxid:3702)]

 Score = 861 (308.1 bits), Expect = 4.8e-93, Sum P(2) = 4.8e-93
 Identities = 161/216 (74%), Positives = 188/216 (87%)

Query:    92 KESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRS 151
             KESN R+K++ESDI  HIGK EAELAL+ NSAA+ GD YQLK LIR+GAD NKTDYDGRS
Sbjct:   507 KESNDRIKKLESDIVIHIGKQEAELALKVNSAAFQGDFYQLKSLIRSGADPNKTDYDGRS 566

Query:   152 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 211
             PLHLA  RGYEDITLFLIQ+GVD+N+KDKFG+TPL EA+K G +GV  LLVKEGAS N++
Sbjct:   567 PLHLAACRGYEDITLFLIQEGVDVNLKDKFGHTPLFEAVKAGQEGVIGLLVKEGASFNLE 626

Query:   212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
             D+G+FLC  VA+GDSD LKR+LS+G++PNS DYDHRTPLHVAASEGL+LMAK+L+EAGAS
Sbjct:   627 DSGNFLCTTVAKGDSDFLKRLLSSGMNPNSEDYDHRTPLHVAASEGLFLMAKMLVEAGAS 686

Query:   272 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS 307
             V +KDRWGN+PLDE R+CGNK LIKLLED K  Q S
Sbjct:   687 VISKDRWGNSPLDEARLCGNKKLIKLLEDVKNAQSS 722

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=IMP;IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2127866 KT5 "K+ transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 4.9e-23, P = 4.9e-23
 Identities = 67/180 (37%), Positives = 103/180 (57%)

Query:   102 ESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY 161
             E+++    GK +  L+L F  AA  GD   L  L++ G++ N+TD +GR+ LH+A S+G 
Sbjct:   530 ETELMLAQGKMDLPLSLCF--AAARGDDLLLHQLLKRGSNPNETDKNGRTALHIAASKGS 587

Query:   162 EDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAV 221
             +   + L++ G D NI+D  G+ PL EAI   H+    LL + GA+L+ D  G F C+AV
Sbjct:   588 QYCVVLLLEHGADPNIRDSEGSVPLWEAIIGRHEENAKLLSENGATLSFDTVGYFSCLAV 647

Query:   222 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 281
              + + + LK ++  G D +  D +  T LH A SEG   + + LLE GA +   D +G T
Sbjct:   648 GQNNLNALKDIVKYGGDISLSDVNGTTALHRAVSEGNLEIVQFLLEKGADMDKPDVYGWT 707

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2043839 KT1 "AT2G26650" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 6.0e-23, P = 6.0e-23
 Identities = 78/246 (31%), Positives = 126/246 (51%)

Query:    58 VIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG--KESNLR-LKQVESDITFHIGKHEA 114
             ++R++   FL   +I  Q NV D    + + +L   KE N   +  V  +I   + + + 
Sbjct:   462 LLRMNRTTFL--NII--QANVGDGT-IIMNNLLQHLKEMNDPVMTNVLLEIENMLARGKM 516

Query:   115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 174
             +L L    AA   D   L  L++ G D N++D +GR+PLH+A S+G  +  L L++   D
Sbjct:   517 DLPLNLCFAAIREDDLLLHQLLKRGLDPNESDNNGRTPLHIAASKGTLNCVLLLLEYHAD 576

Query:   175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 234
              N +D  G+ PL EA+  GH+ V  +L++ G++++  D G F C A  +G+  LLK ++ 
Sbjct:   577 PNCRDAEGSVPLWEAMVEGHEKVVKVLLEHGSTIDAGDVGHFACTAAEQGNLKLLKEIVL 636

Query:   235 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 294
             +G D         + LH A  E    M K LLE GA V  +D  G TP D     G++++
Sbjct:   637 HGGDVTRPRATGTSALHTAVCEENIEMVKYLLEQGADVNKQDMHGWTPRDLAEQQGHEDI 696

Query:   295 IKLLED 300
               L  +
Sbjct:   697 KALFRE 702

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=TAS

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IMP

GO:0006813 "potassium ion transport" evidence=IC;IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0090333 "regulation of stomatal closure" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0010107 "potassium ion import" evidence=IDA

ZFIN|ZDB-GENE-050112-1 psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Danio rerio (taxid:7955)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 67/180 (37%), Positives = 99/180 (55%)

Query:   124 AYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
             AY G   +LK  + +   L  KTD D R+ LH A S G+ +I  FL+  GV++++KD   
Sbjct:    14 AYGGKFEELKKCVLSDNSLAAKTDQDSRTALHWACSAGHVNIAQFLLDLGVEVDLKDDAC 73

Query:   183 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSF-LCIAVARGDSDLLKRVLSNGVDPN 240
              TPL  A   G + +   L+ +GA LN V+  G   L  A ++   ++ + +L NG DPN
Sbjct:    74 WTPLHIAASAGREEIVRSLISKGAQLNSVNQNGCTPLHYAASKNLYEIAQILLENGADPN 133

Query:   241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRMCGNKNLIK 296
             + D    TPLH A+++G Y + +LLL+  AS   +D  GNTPL    DE R    K L++
Sbjct:   134 ATDKLQSTPLHRASAKGNYRLIQLLLKESASTNIQDSEGNTPLHLACDEERAEAAKLLVE 193

GO:0000502 "proteasome complex" evidence=IEA

GO:0055088 "lipid homeostasis" evidence=IMP

UNIPROTKB|E2RTI6 ANKK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 258 (95.9 bits), Expect = 4.2e-21, P = 4.2e-21
 Identities = 77/282 (27%), Positives = 133/282 (47%)

Query:    39 YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV--------- 89
             Y+++V           +   +R++E    P  +++ QG+V      + HGV         
Sbjct:   336 YLKRVLQLSDTGDPVSSDEGLRIYENKVTPLHLLVVQGSVEQVRLLLAHGVHVDCRTACG 395

Query:    90 --------LGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGAD 141
                     L ++ +L    +E     ++   E    L F  AA +GD    + L+  GA 
Sbjct:   396 YTPLLIATLDQQPDLCALLLERGADANLADEEGWAPLHF--AAQNGDDRTARLLLDHGAH 453

Query:   142 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 201
             ++  +++G +PLHLA    +E++   L+ +  D N+++  G TPL  A   GH  +  LL
Sbjct:   454 VDAQEHEGWTPLHLAAQNNFENVARLLVSRQADPNVREAEGKTPLHVAAYFGHISLVKLL 513

Query:   202 VKEGASLNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLY 259
               +GA L+       + L +AV RG    ++ +L +G  P+  D    +PLH+AA+ G Y
Sbjct:   514 TGQGAELDAQQRNLRTPLHLAVERGKVRAIQHLLKSGAAPDVLDQSGYSPLHLAAARGKY 573

Query:   260 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301
             L+ K+LL  GAS+    + G TPL      G+  +I LL ++
Sbjct:   574 LICKMLLRYGASLELPTQQGWTPLHLAAYKGHLEIIHLLAES 615

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

WB|WBGene00007756 C27A7.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 257 (95.5 bits), Expect = 4.7e-21, P = 4.7e-21
 Identities = 68/195 (34%), Positives = 105/195 (53%)

Query:   120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
             F +AA   D+  LK L  AG + + TDY+ R+ LH+A S G+ +   +L++ G +++IKD
Sbjct:   519 FCNAAKTNDVEILKSLKAAGVNFSATDYNLRTALHVAASNGHLESVNYLLKIGTNVHIKD 578

Query:   180 KFGNTPLLEAIKC-GHDGVTSLLVKEG-ASLNVDDAGSFLCIAVARGDSDLLKRVLSNGV 237
              FG   L+ A+K    D + ++    G    +    G  LC+AV + D +LLK   + G 
Sbjct:   579 MFGYNALVCAVKAKAMDCIIAIRDAGGFIDASAQKIGVELCLAVYQNDMELLKCNEAAGT 638

Query:   238 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 297
                 +DYD+RT LHVAAS     +   LL+ G +   KD +G TP+DE +    +NL+ +
Sbjct:   639 HMGEKDYDNRTALHVAASLNKPEIVAYLLQCGLNPHEKDDFGITPMDEAKRRNLQNLMDM 698

Query:   298 L-EDAKCTQLSE-FH 310
             + E    T   E FH
Sbjct:   699 MAEHQALTNNDEVFH 713

GO:0004067 "asparaginase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

ZFIN|ZDB-GENE-050522-247 ankrd52a "ankyrin repeat domain 52a" [Danio rerio (taxid:7955)]

 Score = 258 (95.9 bits), Expect = 7.3e-21, P = 7.3e-21
 Identities = 59/179 (32%), Positives = 101/179 (56%)

Query:   123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
             AAY G L  +K L+  G+D +  D  G +PLH A + G+ D+  +L++ G +I+  + FG
Sbjct:   180 AAYLGHLEVVKLLVSQGSDKSCKDKRGYTPLHAAAASGHVDVVKYLLRNGAEIDEPNAFG 239

Query:   183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI---AVARGDSDLLKRVLSNGVDP 239
             NT L  A   G + V + LV  GA++N  +   +  +   AV+   +  L+ +++NG D 
Sbjct:   240 NTALHVACYTGQEAVANELVNRGANVNQPNHRGYTPLHLAAVSTNGALCLELLVNNGADV 299

Query:   240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
             N +  + ++PLH+AA  G +  +++L++ G  +   DR+GNTPL      G++ LI  L
Sbjct:   300 NMQSKEGKSPLHMAAIHGRFTRSQILIQNGGEIDCVDRYGNTPLHVAAKYGHELLISTL 358

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-070820-14 aspg "asparaginase homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 247 (92.0 bits), Expect = 4.9e-20, P = 4.9e-20
 Identities = 61/168 (36%), Positives = 88/168 (52%)

Query:   123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
             AA  GD+  L+ +   G DL+  DYDGR+PLH+A   G+  +  +L+ KG  +  KD+FG
Sbjct:   481 AAKIGDIDALEAIREMGTDLSMADYDGRTPLHIAACEGHLKVVEYLLGKGATVYAKDRFG 540

Query:   183 NTPLLEAIKCGHDGVTSLLVKEGASLNVD---DAGSFLCIAVARGDSDLLKRVLSNGVDP 239
             +TPL  A++  H  V  LL K GA  + +   D G+ LC   A GD + L+     GVD 
Sbjct:   541 HTPLRNAVRFRHKDVVKLLRKTGAHFSREEMADTGTELCSLAAAGDLEGLEIWQLAGVDL 600

Query:   240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGA--SVFTKDRWGNTPLDE 285
                 YD +TP+ VA + G     + L +A    +    D  GN P+ E
Sbjct:   601 TMTSYDGQTPIEVARATGCVESVEFLKQAALYQTQHQADE-GNEPVFE 647

GO:0004067 "asparaginase activity" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ASPGD|ASPL0000062824 AN1130 [Emericella nidulans (taxid:162425)]

 Score = 250 (93.1 bits), Expect = 4.9e-20, P = 4.9e-20
 Identities = 60/184 (32%), Positives = 99/184 (53%)

Query:   117 ALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 175
             A+ F  AA  G L  +  L++    DLN  D+ GR+PL  A S G+E +    +Q G   
Sbjct:   543 AIHF--AANFGVLPIISPLLKERDCDLNLKDFQGRTPLSHAASNGHESVVKLFLQHGAQA 600

Query:   176 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD-AGSF-LCIAVARGDSDLLKRVL 233
             + K   G TPL+ A+  GH+ V  LL++ GA  +    +G   L  A ++G   +++ +L
Sbjct:   601 DSKTDSGQTPLIFAVVHGHESVVKLLLQHGAQADSKTISGKTPLSYAASKGKESVVRLLL 660

Query:   234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
              +G   +S++   +TP+  AAS+G   + +LLL  GA   +K  WG TPL      G+++
Sbjct:   661 QHGAQADSKNNTGQTPISYAASKGHESVVRLLLTHGAQADSKANWGQTPLSRAAFDGHES 720

Query:   294 LIKL 297
             +++L
Sbjct:   721 VVRL 724

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M8S6	SKOR_ARATH	No assigned EC number	0.7534	0.5835	0.2318	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_II001048 hypothetical protein (841 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	329
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-34
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-28
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-19
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-18
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-17
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	9e-17
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	7e-16
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-16
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	5e-15
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-15
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-13
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-13
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-13
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	3e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-10
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	7e-10
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	8e-10
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-09
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	6e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-09
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	8e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-08
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	1e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-07
cd00038	115	cd00038, CAP_ED, effector domain of the CAP family	7e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-06
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	8e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	8e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	9e-05
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	1e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	2e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	3e-04
PHA02736	154	PHA02736, PHA02736, Viral ankyrin protein; Provisi	3e-04
smart00100	120	smart00100, cNMP, Cyclic nucleotide-monophosphate	4e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	5e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	7e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.001
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	0.002
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	0.002
PHA02989	494	PHA02989, PHA02989, ankyrin repeat protein; Provis	0.002
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.004
smart00248	30	smart00248, ANK, ankyrin repeats	0.004
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  121 bits (306), Expect = 3e-34
 Identities = 57/156 (36%), Positives = 77/156 (49%), Gaps = 31/156 (19%)

Query: 143 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 202
           N  D DGR+PLHLA S G+ ++   L++ G D+N KD  G TPL  A K GH        
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGH-------- 52

Query: 203 KEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMA 262
                                   +++K +L  G D N+RD D  TPLH+AA  G   + 
Sbjct: 53  -----------------------LEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVV 89

Query: 263 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           KLLL+ GA V  +D+ G TPL      G+  ++KLL
Sbjct: 90  KLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score =  115 bits (289), Expect = 2e-28
 Identities = 53/151 (35%), Positives = 81/151 (53%)

Query: 122 SAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
           + A  G+   L+ L++A  D +  D  GR+PLH+A S+GYED  L L++   +++I+D  
Sbjct: 531 TVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDAN 590

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 241
           GNT L  AI   H  +  +L    +  +   AG  LC A  R D   +K +L  G++ +S
Sbjct: 591 GNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDS 650

Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
            D+   T L VA +E    M +LL+  GA V
Sbjct: 651 EDHQGATALQVAMAEDHVDMVRLLIMNGADV 681

Length = 823

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  104 bits (262), Expect = 8e-28
 Identities = 56/144 (38%), Positives = 76/144 (52%), Gaps = 31/144 (21%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA +G L  +K L+  GAD+N  D DGR+PLHLA   G+ +I   L++KG D+N +DK G
Sbjct: 14  AASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDG 73

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
           NTP                               L +A   G+ D++K +L +G D N+R
Sbjct: 74  NTP-------------------------------LHLAARNGNLDVVKLLLKHGADVNAR 102

Query: 243 DYDHRTPLHVAASEGLYLMAKLLL 266
           D D RTPLH+AA  G   + KLLL
Sbjct: 103 DKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 88.3 bits (218), Expect = 2e-20
 Identities = 58/182 (31%), Positives = 75/182 (41%), Gaps = 23/182 (12%)

Query: 121 NSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 180
            +      L +L   +     L   D DGR PLH A S+G + I   L+  G D+N KD 
Sbjct: 45  LALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDA 104

Query: 181 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPN 240
            G+TPL  A   G+                 +    L  A A  D              N
Sbjct: 105 DGDTPLHLAALNGNP-----------PEGNIEVAKLLLEAGADLD------------VNN 141

Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 300
            RD D  TPLH AA  G   + +LLLEAGA   +++ +G T LD     G   L+KLL D
Sbjct: 142 LRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD 201

Query: 301 AK 302
             
Sbjct: 202 KG 203

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 80.4 bits (199), Expect = 4e-19
 Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 2/90 (2%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA +G+L  +K L+  GAD+N  D D  + LHLA   G  +I   L++ G D+N KDK G
Sbjct: 4   AAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKDKDG 61

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD 212
           NT L  A + G+  +  LL++ GA +N+ D
Sbjct: 62  NTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 77.3 bits (191), Expect = 6e-18
 Identities = 35/91 (38%), Positives = 55/91 (60%)

Query: 186 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYD 245
           L  A K G+  +  LL+++GA +N+ D  + L +A   G+ +++K +L +G D N++D D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60

Query: 246 HRTPLHVAASEGLYLMAKLLLEAGASVFTKD 276
             T LH+AA  G   + KLLLE GA +  KD
Sbjct: 61  GNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 81.2 bits (201), Expect = 4e-17
 Identities = 55/207 (26%), Positives = 90/207 (43%), Gaps = 41/207 (19%)

Query: 102 ESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG- 160
           E +    I   EA L   +   A +  + +++ L+ AGAD+N     G++PLHL      
Sbjct: 3   EDESVDII--MEAAL-YDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSS 59

Query: 161 --YEDITLFLIQKGVDINIKDKFGNTPL---------LEAIKCGHDGVTSLLVKEGASLN 209
              +DI   L++ G D+N  ++ G TPL         L+ IK        LL+K GA +N
Sbjct: 60  EKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIK--------LLIKAGADVN 111

Query: 210 VDDAGSF----LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL----- 260
             D        + ++    +  +++ +L  G D N+ D    TPL V       L     
Sbjct: 112 AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV------LLKSRNA 165

Query: 261 ---MAKLLLEAGASVFTKDRWGNTPLD 284
              + +LL++AGA V+  D    + L 
Sbjct: 166 NVELLRLLIDAGADVYAVDDRFRSLLH 192

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 80.5 bits (199), Expect = 9e-17
 Identities = 54/182 (29%), Positives = 79/182 (43%), Gaps = 20/182 (10%)

Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGY-EDITLFLIQKGVDINIKDKFGNTPL---LEAI 190
           L+ AGAD+N  +  G +PLHL        D+   LI+ G D+N KDK G TPL   L + 
Sbjct: 69  LLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYL-SG 127

Query: 191 KCGHDGVTSLLVKEGASLNVDDAGSFLCIAV----ARGDSDLLKRVLSNGVDPNSRDYDH 246
              +  V  LL+++GA +N  D      +AV       + +LL+ ++  G D  + D   
Sbjct: 128 FNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRF 187

Query: 247 RTPLHVAASEGLYLMA-----KLLLEAGASVFTKDRWGNTPLDEGRM---CGNKNLIKLL 298
           R+ LH                + L+ AG      D  GNTPL        C    ++ LL
Sbjct: 188 RSLLHHHL---QSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLL 244

Query: 299 ED 300
             
Sbjct: 245 IA 246

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 78.4 bits (193), Expect = 4e-16
 Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 7/157 (4%)

Query: 132 LKGLIRAGADLNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 190
            K L+  GAD+N  D   G + LH AT    + +T  L+  G ++NI DK  N+PL  A+
Sbjct: 150 TKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAV 209

Query: 191 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVAR-GDSDLLKRVLSNGVDPNSRDY-DH 246
           K  +  +  +L++ GAS +  D    + L I+V    D D+LK +L +GVD N++ Y   
Sbjct: 210 KHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILG 269

Query: 247 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
            T LH +      L  KLLLE GA + + + +  TPL
Sbjct: 270 LTALHSSIKSERKL--KLLLEYGADINSLNSYKLTPL 304

Length = 477

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 71.5 bits (176), Expect = 7e-16
 Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 217 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 276
           L +A   G+ +L+K +L  G D N  D D  T LH+AA  G   + KLLLE GA V  KD
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 277 RWGNTPLDEGRMCGNKNLIKLL 298
           + GNT L      GN  ++KLL
Sbjct: 59  KDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 77.8 bits (192), Expect = 7e-16
 Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 14/164 (8%)

Query: 132 LKGLIRAGADLNKTDYDGRSPLH--LATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA 189
           +K LI+AGAD+N  D  GR+PLH  L+       +   L++KG D+N  D +G TPL   
Sbjct: 100 IKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVL 159

Query: 190 IKCGH--DGVTSLLVKEGASL-NVDDAG-----SFLCIAVARGDSDLLKRVLSNGVDPNS 241
           +K  +    +  LL+  GA +  VDD         L     +  + +++ ++  G DP +
Sbjct: 160 LKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHL--QSFKPRARIVRELIRAGCDPAA 217

Query: 242 RDYDHRTPLHVAASEGLYLMAKL--LLEAGASVFTKDRWGNTPL 283
            D    TPLH  A+      + +  LL AG S+  ++R+G TPL
Sbjct: 218 TDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPL 261

Length = 471

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 75.3 bits (185), Expect = 5e-15
 Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 3/114 (2%)

Query: 217 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 276
           LC   A GD+   + +L+ G DPN RDYD RTPLH+A + G   + ++LLE GA     D
Sbjct: 86  LCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD 145

Query: 277 RWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCS--QGMIGIAENLLLLPL 328
           + G TPL+     G + +++LL         E    +      G   +L   P+
Sbjct: 146 KDGKTPLELAEENGFREVVQLLS-RHSQCHFELGANAKPDSFTGKPPSLEDSPI 198

Length = 664

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 74.6 bits (183), Expect = 7e-15
 Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 12/176 (6%)

Query: 127 GDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 186
           GD   ++  I+ GAD+N  +     PL  A   G  DI   LI  GVD +I         
Sbjct: 46  GDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSIL-------- 97

Query: 187 LEAIKCGHDGVTSLLVKEGASLNVDDAGS--FLCIAVARGDSDLLKRVLSNGVDPNSRDY 244
              I C    +   ++  G  +N+ DA    FL  A+ +GD + +K +   G D N  D 
Sbjct: 98  --PIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD 155

Query: 245 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 300
           +   P+H+A     + + KLLLE GA    KD  G +PL      G+   IKLL D
Sbjct: 156 NGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLID 211

Length = 434

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 71.1 bits (174), Expect = 1e-13
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 1/173 (0%)

Query: 113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG 172
           +AEL    + A   GDL  +K L   GAD+N  D +G  P+H+A    + DI   L++KG
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG 180

Query: 173 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRV 232
              N+KD  G +PL  A + G      LL+  G  +       F  +  A   +     +
Sbjct: 181 AYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIEL 240

Query: 233 LSNGVDPNSRDYDHRTPLHVAASEGLYL-MAKLLLEAGASVFTKDRWGNTPLD 284
           L N    N +D D  TPLH A +    + +  +LL   A +  KD  G  P+D
Sbjct: 241 LINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPID 293

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 70.3 bits (172), Expect = 2e-13
 Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 4/145 (2%)

Query: 111 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ 170
           +H+   AL + +      L +L  L+  GA++N  D    SPLH A     + I   L++
Sbjct: 165 RHKGNTALHYATENKDQRLTEL--LLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLE 222

Query: 171 KGVDINIKDKFGNTPLLEAI-KCGHDGVTSLLVKEGASLNVDDA-GSFLCIAVARGDSDL 228
            G   + +DK GNTPL  ++  C    +  LL++ G  +N          +  +      
Sbjct: 223 NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKSERK 282

Query: 229 LKRVLSNGVDPNSRDYDHRTPLHVA 253
           LK +L  G D NS +    TPL  A
Sbjct: 283 LKLLLEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 19/168 (11%)

Query: 135 LIRAGADLNKTDYDGRSPLHLA--TSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC 192
           L+  GA++N  D +G +PL  A         I  +L+  G ++NIK+  G   L   ++ 
Sbjct: 92  LLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLES 151

Query: 193 GHD--GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPL 250
                 +  LL+ +G  +N  +                +  +LS GV  N +D    TPL
Sbjct: 152 NKIDLKILKLLIDKGVDINAKNR---------------VNYLLSYGVPINIKDVYGFTPL 196

Query: 251 HVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           H A         K LL+ GA+    +++G+TPL    +  NK + KLL
Sbjct: 197 HYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLL 244

Length = 422

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 60.6 bits (147), Expect = 3e-10
 Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 13/143 (9%)

Query: 121 NSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY---EDITLFLIQKGVDINI 177
           N   Y   L  +K LI  GAD+NK + DG +PL+   S GY    +I LF+I+ G D  +
Sbjct: 81  NIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTL 140

Query: 178 KDKFGNTPLLEAIKCGHD---GVTSLLVKEGASLNV-------DDAGSFLCIAVARGDSD 227
            DK G T L   ++  H     +  LL+++G  +N        D    +    + R D+D
Sbjct: 141 LDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDAD 200

Query: 228 LLKRVLSNGVDPNSRDYDHRTPL 250
           +LK  + NG   N  +  H+   
Sbjct: 201 ILKLFVDNGFIINKENKSHKKKF 223

Length = 489

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 8/162 (4%)

Query: 132 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITL--FLIQKGVDINIKDKFGNTPL--- 186
           ++ L+R GAD+N  D  G +PL +       ++ L   LI  G D+   D    + L   
Sbjct: 135 IRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHH 194

Query: 187 LEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSD---LLKRVLSNGVDPNSRD 243
           L++ K     V  L+         D  G+    ++A G S    L+  +L  G+  N+R+
Sbjct: 195 LQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARN 254

Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 285
              +TPLH AA        + L+  GA +      GNTPL  
Sbjct: 255 RYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSL 296

Length = 471

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 59.9 bits (145), Expect = 7e-10
 Identities = 33/86 (38%), Positives = 45/86 (52%)

Query: 116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 175
           L +     A  GD    + L+  GAD N  DYDGR+PLH+A + G+  +   L++ G D 
Sbjct: 82  LTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP 141

Query: 176 NIKDKFGNTPLLEAIKCGHDGVTSLL 201
            + DK G TPL  A + G   V  LL
Sbjct: 142 TLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 59.7 bits (144), Expect = 7e-10
 Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 14/176 (7%)

Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGY--EDITLFLIQKGVDINIKDKFGNTPLLEA--I 190
           L+  GAD+N  +  G +PL+L    GY  E+I   LI  G D+N  D+   TPL +A  +
Sbjct: 293 LLERGADVNAKNIKGETPLYLMAKNGYDTENIRT-LIMLGADVNAADRLYITPLHQASTL 351

Query: 191 KCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVDPNSRDYDHRT 248
               D V +LL + GA++N  D      I  A  R +  ++  +L  G D  +      T
Sbjct: 352 DRNKDIVITLL-ELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGT 410

Query: 249 PLHVA-ASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK---NLIKLLED 300
            LH A      Y+  K L++ GA+V +K++  +TPL     C      ++I++L D
Sbjct: 411 ALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYA--CKKNCKLDVIEMLLD 464

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 59.2 bits (143), Expect = 8e-10
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 10/155 (6%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDY-DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
           A   GD+  ++ L+  G   +   Y DG +PLHLAT     DI   LI +G D +I +  
Sbjct: 75  AVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTD 134

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 239
             +PL  A+  G      LL+   A L+++D      L IA+A+GD  + K +L +G + 
Sbjct: 135 KFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANI 194

Query: 240 NSRDYDHRTP----LHVAASEGLYLMAKLLLEAGA 270
           +   Y  +      L  A       + +L ++ GA
Sbjct: 195 D---YFGKNGCVAALCYAIENNKIDIVRLFIKRGA 226

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 132 LKGLIRAGADLNKTDYDGRSPLH-LAT-SRGYEDITLFLIQKGVDINIKDKFGNTPLLEA 189
           ++ LIRAG D   TD  G +PLH +AT S     + L L+  G+ IN ++++G TPL  A
Sbjct: 205 VRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYA 264

Query: 190 IKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLS 234
               +      L+  GA +N   +     +   V   +   ++  L+
Sbjct: 265 AVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA 311

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 52/203 (25%), Positives = 82/203 (40%), Gaps = 37/203 (18%)

Query: 132 LKGLIRAGADLNKTDYDGRSPLHLATSR------------------GYEDITL------- 166
           +K L+  G ++N+ D+   +PLH+                       Y  + +       
Sbjct: 53  VKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNR 112

Query: 167 -FLIQKGVDINIKDKFGNTPLLEAIKCGHDG-----VTSLLVKEGASLNVDD---AGSFL 217
              I K +  N         L+   K   D      +T LL+  GA +N+ D     + L
Sbjct: 113 NVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTAL 172

Query: 218 CIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 277
             A    D  L + +LS G + N  D  + +PLH A       +  +LLE GAS   +D+
Sbjct: 173 HYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDK 232

Query: 278 WGNTPL--DEGRMCGNKNLIKLL 298
            GNTPL    G  C + +++KLL
Sbjct: 233 CGNTPLHISVGY-CKDYDILKLL 254

Length = 477

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 23/76 (30%), Positives = 38/76 (50%)

Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
           L+  G  +N  D  G +PLH A      +   +L+  G + N+ +K+G+TPL  AI   +
Sbjct: 178 LLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNN 237

Query: 195 DGVTSLLVKEGASLNV 210
             +  LL+  G S+  
Sbjct: 238 KEIFKLLLNNGPSIKT 253

Length = 422

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 56.9 bits (137), Expect = 5e-09
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 3/112 (2%)

Query: 132 LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 191
           +K LI  GAD +  + D  SPLHLA   G       LI     ++I+D  G TPL+ A+ 
Sbjct: 118 MKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMA 177

Query: 192 CGHDGVTSLLVKEGASLN-VDDAG--SFLCIAVARGDSDLLKRVLSNGVDPN 240
            G   +  +L+  GA+++     G  + LC A+     D+++  +  G D N
Sbjct: 178 KGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN 229

Length = 413

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 56.5 bits (136), Expect = 5e-09
 Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 5/179 (2%)

Query: 127 GDLYQLKGLIRAGADLNKTDYDGRSPLHLATS-RGYEDITLFLIQKGVDINIKDKFGNTP 185
           G+L   + L+  G + N   YDG SP+ LA   R  E I L L++ G   ++K     + 
Sbjct: 13  GELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKL-LMKHGAIPDVKYPDIESE 71

Query: 186 LLEAIKCGHDGVTSLLVKEGASLN---VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
           L +A++ G       L+  G   +     D  + L +A      D++K +++ G DP+  
Sbjct: 72  LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131

Query: 243 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301
           + D  +PLH+A   G     +LL++  A +  +D  G TPL      G+  + K+L D+
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS 190

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 57.0 bits (137), Expect = 6e-09
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 7/152 (4%)

Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
           L+  GAD+N  D    +P+H A  RG   +   L+  G D+NI      + L  A+   +
Sbjct: 164 LLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKN 223

Query: 195 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL--SNGVDPNSRDYDHRTPLHV 252
                 ++   +++N +D    L +  A  + DL   +L    G   NS D    TPLH 
Sbjct: 224 IDTIKAIIDNRSNINKND----LSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHH 279

Query: 253 AA-SEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
           A+ +  L  +   LLE GA V  K+  G TPL
Sbjct: 280 ASQAPSLSRLVPKLLERGADVNAKNIKGETPL 311

Length = 682

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 55.2 bits (132), Expect = 7e-09
 Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 20/142 (14%)

Query: 115 ELALRFNSAAYHGDLYQLKGLIRAGA---DLNKTDYDGRSPLHLATSRGYEDITLFLIQK 171
            LA    +    G++   K L+ AGA     N  D DG +PLH A   G  DI   L++ 
Sbjct: 111 HLAALNGNP-PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA 169

Query: 172 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKR 231
           G D N ++ +G T L  A K G   +  LL+ +G  L                       
Sbjct: 170 GADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHL----------------SLLKFNL 213

Query: 232 VLSNGVDPNSRDYDHRTPLHVA 253
                 + + R+  + T L +A
Sbjct: 214 EGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 56.2 bits (136), Expect = 8e-09
 Identities = 46/197 (23%), Positives = 76/197 (38%), Gaps = 27/197 (13%)

Query: 129 LYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL-- 186
           +  +K +I      + +      PL+LA      D+   L+  G DIN   K  +TPL  
Sbjct: 15  VKNIKYIIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHY 74

Query: 187 --LEAIKCGHD-GVTSLLVKEGASLNV-DDAGS---FLCIAVARGDSDLLKRVLSNGVDP 239
                        +  LL++ GA++N  D+ G       I+       +++ +L NG + 
Sbjct: 75  LSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANV 134

Query: 240 NSRDYDHRTPLHVAAS--------------EGLYLMAK----LLLEAGASVFTKDRWGNT 281
           N ++ D    LH+                 +G+ + AK     LL  G  +  KD +G T
Sbjct: 135 NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFT 194

Query: 282 PLDEGRMCGNKNLIKLL 298
           PL       N   +K L
Sbjct: 195 PLHYAVYNNNPEFVKYL 211

Length = 422

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 56.6 bits (136), Expect = 8e-09
 Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 5/150 (3%)

Query: 128 DLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPL 186
           D   ++ LI  GAD+N  D    +PLH A++    +DI + L++ G ++N +D    TP+
Sbjct: 320 DTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPI 379

Query: 187 LEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCIAVARGDSDL-LKRVLSNGVDPNSRD 243
             A    +  + + L+  GA +       G+ L  A+   +  + +K ++  G + NS++
Sbjct: 380 HYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKN 439

Query: 244 YDHRTPLHVAASEGLYL-MAKLLLEAGASV 272
            D  TPLH A  +   L + ++LL+ GA V
Sbjct: 440 KDLSTPLHYACKKNCKLDVIEMLLDNGADV 469

Length = 682

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 54.4 bits (130), Expect = 1e-08
 Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 9/147 (6%)

Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCIAVARGDSDLLKRV 232
           + + K       L          +   L+ +      D  G   L  A ++GD  ++K +
Sbjct: 33  NPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLL 92

Query: 233 LSNGVDPNSRDYDHRTPLHVAA-----SEGLYLMAKLLLEAGAS---VFTKDRWGNTPLD 284
           L++G D N++D D  TPLH+AA      EG   +AKLLLEAGA       +D  GNTPL 
Sbjct: 93  LASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH 152

Query: 285 EGRMCGNKNLIKLLEDAKCTQLSEFHY 311
              + G+ ++++LL +A     S   Y
Sbjct: 153 WAALNGDADIVELLLEAGADPNSRNSY 179

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 135 LIRAGADLNKTDYDGRSPLHLAT-SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 193
           L  AG  +N  D    +PLH A+ +     +   L+++G D+N K+  G TPL    K G
Sbjct: 259 LYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNG 318

Query: 194 HDGVT-SLLVKEGASLNVDDAGSFLCIAVARG---DSDLLKRVLSNGVDPNSRDYDHRTP 249
           +D      L+  GA +N  D      +  A     + D++  +L  G + N+RDY  +TP
Sbjct: 319 YDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTP 378

Query: 250 LHVAASEGLYLMAKLLLEAGASV 272
           +H AA     ++   LL+ GA +
Sbjct: 379 IHYAAVRNNVVIINTLLDYGADI 401

Length = 682

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 12/158 (7%)

Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
           L+  G   N+TD DG  PLH+A+      I   L+  G D N  DK   TPL        
Sbjct: 58  LLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD 117

Query: 195 DGV--TSLLVKEGASLN--VDDAGSFLCIAVARGDSDLLKRVLSNG-----VDPNSRDYD 245
           + +   +LLV+ GA +N  VD+ G    +A       + K+++S G     VD   +++ 
Sbjct: 118 EVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHI 177

Query: 246 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
           HR   H+ +          +++ G S    D  GNTPL
Sbjct: 178 HR---HLMSDNPKASTISWMMKLGISPSKPDHDGNTPL 212

Length = 446

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 48.0 bits (115), Expect = 7e-08
 Identities = 23/54 (42%), Positives = 33/54 (61%)

Query: 149 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 202
           GR+ LH A   G  ++  +L++KGVDIN  D+ GNT L  A + G+  V  LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 25/153 (16%)

Query: 171 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN--------------------- 209
           KG  INI      TPL++AI+ G   +  L +K GA +N                     
Sbjct: 24  KGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDI 83

Query: 210 ----VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265
               +D+      + +   + D++K +L  G+D N +D + +T LH A  +G     K+L
Sbjct: 84  IKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKML 143

Query: 266 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            E GA V  +D  G  P+         ++IKLL
Sbjct: 144 FEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL 176

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 22/52 (42%), Positives = 28/52 (53%)

Query: 215 SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL 266
           + L  A   G  +L+K +L  GVD N  D D  T LH+AA  G   + KLLL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 180
           DG +PLHLA   G+ ++   L++ G D+N +DK
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 13/195 (6%)

Query: 85  VCHGVLGKESNLRLKQVESDI----TFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGA 140
           +C  +L  E ++  + ++  I      + G    +LA++F       D   +K L++ GA
Sbjct: 6   LCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFR------DSEAIKLLMKHGA 59

Query: 141 DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN-IKDKFGNTPLLEAIKCGHDGVTS 199
             +    D  S LH A   G       L+  G   + +  K G TPL  A       +  
Sbjct: 60  IPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMK 119

Query: 200 LLVKEGASLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG 257
           LL+  GA  ++   D  S L +AV  GD   ++ ++ +    +  D    TPL +A ++G
Sbjct: 120 LLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKG 179

Query: 258 LYLMAKLLLEAGASV 272
              + K+LL++GA++
Sbjct: 180 DIAICKMLLDSGANI 194

Length = 413

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)

Query: 135 LIRAG-ADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL 186
           L+  G  DLN TD +G +PLHLA   G  ++  +L++ GVD+N++D  G T L
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTAL 53

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 6/122 (4%)

Query: 164 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD--DAGSFLCIAV 221
           I   L++ G D+N KD +  TP+  A + G+  + +LL+  GA +N+   D  S L  AV
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAV 219

Query: 222 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 281
              + D +K ++ N  + N  D    + L    +E L   + LL +AG SV + D   NT
Sbjct: 220 DSKNIDTIKAIIDNRSNINKNDL---SLLKAIRNEDLE-TSLLLYDAGFSVNSIDDCKNT 275

Query: 282 PL 283
           PL
Sbjct: 276 PL 277

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI 169
           AA  G L  +K L+  G D+N+TD DG + LH+A   G  ++   L+
Sbjct: 8   AAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 22/53 (41%), Positives = 26/53 (49%)

Query: 246 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            RT LH AA  G   + K LLE G  +   D  GNT L      GN  ++KLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 18/46 (39%), Positives = 24/46 (52%)

Query: 45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
          LF G   E + ++   L E  F  GEVI+ QG+  D LY V  G +
Sbjct: 1  LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSV 46

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 8/171 (4%)

Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG- 214
           A   G  DI   L+  G++ N +   G +P+  A+K        LL+K GA  +V     
Sbjct: 9   AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI 68

Query: 215 -SFLCIAVARGDSDLLKRVLSNGVDPNSRDY-DHRTPLHVAASEGLYLMAKLLLEAGAS- 271
            S L  AV  GD   ++ +L  G   +   Y D  TPLH+A       + KLL+  GA  
Sbjct: 69  ESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP 128

Query: 272 -VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK-CTQLSEFHYCSQGMIGIA 320
            +   D++  +PL    M G+   I+LL D K C  + +   C+  +I +A
Sbjct: 129 DIPNTDKF--SPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMA 177

Length = 413

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 205 GASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKL 264
           G   + + A + L +A + G++ LL+ +L   +DP+  D   RTPLH+AAS+G      +
Sbjct: 518 GEHDDPNMASNLLTVA-STGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLV 576

Query: 265 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           LL+   +V  +D  GNT L       +  + ++L
Sbjct: 577 LLKHACNVHIRDANGNTALWNAISAKHHKIFRIL 610

Length = 823

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 60/184 (32%), Positives = 86/184 (46%), Gaps = 12/184 (6%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA  G+   +  L+  GAD+N    D  S L  A      D    +I    +IN  D   
Sbjct: 185 AAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKND--- 241

Query: 183 NTPLLEAIKCGHDGVTSLLVKE-GASLN-VDD-AGSFLCIAV-ARGDSDLLKRVLSNGVD 238
              LL+AI+   D  TSLL+ + G S+N +DD   + L  A  A   S L+ ++L  G D
Sbjct: 242 -LSLLKAIR-NEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD 299

Query: 239 PNSRDYDHRTPLHVAASEGLYLM-AKLLLEAGASVFTKDRWGNTPLDEGRMCG-NKN-LI 295
            N+++    TPL++ A  G      + L+  GA V   DR   TPL +      NK+ +I
Sbjct: 300 VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVI 359

Query: 296 KLLE 299
            LLE
Sbjct: 360 TLLE 363

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 233 LSNG-VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 284
           L +G +D N+ D +  TPLH+AA  G   + + LL+ G  +  +D  G T LD
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54

Length = 56

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 47.1 bits (112), Expect = 8e-06
 Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 13/122 (10%)

Query: 132 LKGLIRAGADLNKTDYDGRSPLH--LATSRGYE---DITLFLIQKGVDINIKDKFGNTPL 186
           +K  I  GA++N  D +  +PL   L+  + Y+   DI   LI+ G DIN K+  G TPL
Sbjct: 54  VKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPL 113

Query: 187 LEAIKCGHDG---VTSLLVKEGASLNVDDAGSF--LCIAVARG---DSDLLKRVLSNGVD 238
              +  G+     +   +++ GA   + D   F  L + +      D +++K +L  GVD
Sbjct: 114 YCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD 173

Query: 239 PN 240
            N
Sbjct: 174 IN 175

Length = 489

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.8 bits (99), Expect = 8e-06
 Identities = 18/33 (54%), Positives = 22/33 (66%)

Query: 245 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 277
           D  TPLH+AA  G   + KLLLEAGA V  +D+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 39.3 bits (92), Expect = 9e-05
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 200 LLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVA 253
           LL      LN  D      L +A   G  +L++ +L  GVD N RD D  T L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLF-LIQKGVDINIKDKFGNTPLLEAIK 191
           +++ G   +K D+DG +PLH+  S+  +++ +  L+    D+N ++KFG++PL   IK
Sbjct: 194 MMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIK 251

Length = 446

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 15/30 (50%), Positives = 19/30 (63%)

Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINI 177
           DGR+PLHLA   G  ++   L+ KG DIN 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 36/166 (21%)

Query: 103 SDITFHIGKHEAELALRFNSAAYHG-------DLYQLKGLIR--AGADLNKTDYDGRSPL 153
            DI   + +   E     N  A HG       D Y +K L++   G  +N  D DG  P+
Sbjct: 342 GDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLD-DGEIPI 400

Query: 154 -HLATSR-GYEDITLFLIQKGV---------------------DINIKDKFGNTPLLEAI 190
            HL  S  G  +   +  +KG+                     DIN+ DK G T L +A+
Sbjct: 401 GHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETLLHKAV 460

Query: 191 KCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS---DLLKRVL 233
           +     + SLL++ G+ +N+     + CIA+A  +S   +LLK +L
Sbjct: 461 RYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLL 506

Length = 661

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINI 177
           DG +PLHLA   G  ++   L++ G DIN 
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)

Query: 131 QLKGLIRAGADLN-KTDYDGRSPLHLAT-SRGYEDITLFLIQKGVDINIKDKFGNTPLLE 188
           +LK L+  GAD+N K    G +PLH+A  ++ YE  T    Q GV++ I +    TP   
Sbjct: 73  KLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYV 132

Query: 189 AIKCGHDGVTSLLVKEGASLNV 210
           A +     + ++L  +GA   V
Sbjct: 133 ACERHDAKMMNILRAKGAQCKV 154

Length = 154

>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
          LFK   +E + ++   L    +  GEVI+ QG+V D  Y +  G +
Sbjct: 1  LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIIVSGEV 46

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases. Length = 120

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 38/179 (21%), Positives = 59/179 (32%), Gaps = 37/179 (20%)

Query: 123 AAYHGDLYQLKGLIRAGADLN---------KTD-----YDGRSPLHLATSRGYEDITLFL 168
           AA+  +   +K L+  GA +          K+      Y G SPL+ A   G   I   L
Sbjct: 135 AAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALL 194

Query: 169 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDL 228
            +   DI   D  GNT LL            ++  E  +             ++    + 
Sbjct: 195 SEDPADILTADSLGNT-LLHL---------LVMENEFKAEY---------EELSCQMYNF 235

Query: 229 LKRVLSNGVDPNS----RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
              +L    D        ++   TPL +AA EG  ++ +L L           W N   
Sbjct: 236 ALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQ 294

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 212
           GNTPL  A + GH  V  LL++ GA +N  D
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 45/183 (24%), Positives = 66/183 (36%), Gaps = 38/183 (20%)

Query: 152 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH---------------DG 196
           PLH A      D+   L+ +G ++N  D    TPL   I C                   
Sbjct: 40  PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPL--HIICKEPNKLGMKEMIRSINKCS 97

Query: 197 VTSLLVKEGASLNVDDAGSFLCIAVARG--------------------DSDLLKRVLSNG 236
           V   LV    + N  +   F  I   R                     ++++ K +LS G
Sbjct: 98  VFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG 157

Query: 237 VDPNSRDYDH-RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 295
            D N +D     T LH A       + +LLL  GA+V   D+  N+PL       NK ++
Sbjct: 158 ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIV 217

Query: 296 KLL 298
            +L
Sbjct: 218 HIL 220

Length = 477

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK 191
            I +  D+N+ D  G +PL+ + S     I  +L+Q G DINI  + GNT L  A +
Sbjct: 244 FIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFE 300

Length = 489

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 46/183 (25%), Positives = 76/183 (41%), Gaps = 32/183 (17%)

Query: 124 AYHGDLYQ----LKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK----GVDI 175
           AY G++Y     L+ L   G ++N  +    +PLH     G  ++   +I+K    G D+
Sbjct: 183 AYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITG--NVCASVIKKIIELGGDM 240

Query: 176 NIKDKFGNTPLLEAIKCGHDGVTSLLVK-EGASLNVDDAGS-----FLCIAVARG-DSDL 228
           ++K   G +P++  I    D +   +      SL+ +   +        I +AR  D  +
Sbjct: 241 DMKCVNGMSPIMTYI-INIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISV 299

Query: 229 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLM--------AKLLLEAGASVFTKDRWGN 280
           +   L  GV  + +D   RT LH       Y++         KLL E G  +   D  GN
Sbjct: 300 VYSFLQPGVKLHYKDSAGRTCLHQ------YILRHNISTDIIKLLHEYGNDLNEPDNIGN 353

Query: 281 TPL 283
           T L
Sbjct: 354 TVL 356

Length = 764

>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 37/179 (20%)

Query: 132 LKGLIRAGADLNKTDYDGRSPLHLATSRGY--EDITLFLIQKGVDINIKDKFGNTPLLEA 189
           L+ L+R G D+N+  Y G S L L   R      I   LI  G D+N K  +  TPL   
Sbjct: 19  LEFLLRTGFDVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAV 76

Query: 190 IK------CGHDGVTSLLVKEGASLN---VDDAGSFLCIAVAR--GDSDLLKRVLSNGVD 238
           ++           +  LL+K GA +N    +     +C        + D+L+ +LS G++
Sbjct: 77  LRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGIN 136

Query: 239 ----PNSRDYDHRTPLHVAASEGLYL--------MAKLLLEAGASVF-TKDRWGNTPLD 284
                NSR Y+    LH      +YL        + K+LL  G ++F     +G TP++
Sbjct: 137 VNDVKNSRGYN---LLH------MYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMN 186

Length = 494

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 121 NSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 180
           + A Y+ +   +K L+  GA+ N  +  G +PLH+A     ++I   L+  G  I    +
Sbjct: 197 HYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIE 256

Query: 181 F 181
            
Sbjct: 257 T 257

Length = 422

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.1 bits (79), Expect = 0.004
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 245 DHRTPLHVAASEGLYLMAKLLLEAGASV 272
           D RTPLH+AA  G   + KLLL+ GA +
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADI 28

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 132 LKGLIRAGADLNKTDYDGRSPLH--LATSRGYEDITLFLIQKGVDINIKDKFGNTPL 186
           LK LI +G+ + + D DG++ LH  +       ++   LI  GV    KD   N  L
Sbjct: 106 LKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNIL 162

Length = 209

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	329
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PLN03192	823	Voltage-dependent potassium channel; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
PHA02795	437	ankyrin-like protein; Provisional	99.98
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
PHA02730	672	ankyrin-like protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02917	661	ankyrin-like protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.94
PHA02792	631	ankyrin-like protein; Provisional	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
KOG0514	452	consensus Ankyrin repeat protein [General function	99.92
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.86
PHA02736	154	Viral ankyrin protein; Provisional	99.85
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.83
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.81
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.8
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.79
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.73
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.72
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.7
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.66
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.63
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.57
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.55
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.54
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.54
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.48
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.46
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.45
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.45
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.45
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.44
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.43
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.38
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.03
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.97
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.91
PF13606	30	Ank_3: Ankyrin repeat	98.88
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.84
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.81
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.8
PF13606	30	Ank_3: Ankyrin repeat	98.79
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.75
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.72
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.7
KOG0522	560	consensus Ankyrin repeat protein [General function	98.7
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.67
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.65
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.64
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.62
KOG2384	223	consensus Major histocompatibility complex protein	98.49
KOG0511	516	consensus Ankyrin repeat protein [General function	98.43
KOG0522	560	consensus Ankyrin repeat protein [General function	98.42
KOG2384	223	consensus Major histocompatibility complex protein	98.38
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.37
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.35
KOG0511	516	consensus Ankyrin repeat protein [General function	98.29
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.93
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.9
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.74
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.35
KOG2505	591	consensus Ankyrin repeat protein [General function	97.24
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.01
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.98
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.9
KOG2505	591	consensus Ankyrin repeat protein [General function	96.67
KOG0498	727	consensus K+-channel ERG and related proteins, con	96.46
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.18
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.93
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.22
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.69

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-37  Score=264.75  Aligned_cols=210  Identities=21%  Similarity=0.134  Sum_probs=188.3

Q ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q 020239          112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  191 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  191 (329)
                      .+..+.||||+|+..|+.++++.|++.|++++..+  |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus        26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~  103 (284)
T PHA02791         26 ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVD  103 (284)
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            45667899999999999999999999999887764  6899999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCcCCC---CcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCchHHHHHHHhCcHHHHHHHHH
Q 020239          192 CGHDGVTSLLVKEGASLNVDDA---GSFLCIAVARGDSDLLKRVLSNGVDPNSRD-YDHRTPLHVAASEGLYLMAKLLLE  267 (329)
Q Consensus       192 ~~~~~~v~~Ll~~~~~~~~~~~---~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~  267 (329)
                      .|+.+++++|+++|++++..+.   .||||+|+..|+.+++++|++++.+.  .| ..|.||||+|+..|+.++++.|++
T Consensus       104 ~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~  181 (284)
T PHA02791        104 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLD  181 (284)
T ss_pred             cCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999876553   47999999999999999999987543  23 358999999999999999999999


Q ss_pred             CCCCccCCCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCccccc-cccchhHHHHHhhhc
Q 020239          268 AGASVFTKDRWGNTP-LDEGRMCGNKNLIKLLEDAKCTQLSEFH-YCSQGMIGIAENLLL  325 (329)
Q Consensus       268 ~g~~~~~~~~~g~t~-l~~A~~~~~~~iv~~L~~~~~~~~~~~~-~~~~~~~~~~~~l~~  325 (329)
                      +|++++.+|..|.|| ||+|+..|+.++|++|+++|+..-.... ...-++-+++++||+
T Consensus       182 ~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~~~l~~~e~~~~ll~  241 (284)
T PHA02791        182 YMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLENVLLDDAEIAKMIIE  241 (284)
T ss_pred             CCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccCccCCCHHHHHHHHH
Confidence            999999999999987 9999999999999999999998755533 222488999999985

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-37  Score=287.03  Aligned_cols=197  Identities=30%  Similarity=0.386  Sum_probs=187.4

Q ss_pred             CccchhhhHHHHHHH--HcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC--cHHHHHHHHhcCCCccccCCCCCcH
Q 020239          110 GKHEAELALRFNSAA--YHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG--YEDITLFLIQKGVDINIKDKFGNTP  185 (329)
Q Consensus       110 ~~~~~~~~~~l~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~  185 (329)
                      +..+..+.||||.|+  ..|+.+++++|++.|++++..+..|.||||+|+..|  +.+++++|+++|++++.++..|.||
T Consensus       100 ~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tp  179 (480)
T PHA03100        100 NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTP  179 (480)
T ss_pred             CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCH
Confidence            345566789999999  999999999999999999999999999999999999  9999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcCCC--------CcHHHHHHHcCC--HHHHHHHHHCCCCCCCCCCCCchHHHHHHH
Q 020239          186 LLEAIKCGHDGVTSLLVKEGASLNVDDA--------GSFLCIAVARGD--SDLLKRVLSNGVDPNSRDYDHRTPLHVAAS  255 (329)
Q Consensus       186 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~--------~~~l~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  255 (329)
                      ||+|+..|+.+++++|+++|++++..+.        .||+|.|+..|+  .+++++|++.|++++.+|..|.||||+|+.
T Consensus       180 L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~  259 (480)
T PHA03100        180 LHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVY  259 (480)
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            9999999999999999999999887653        689999999999  999999999999999999999999999999


Q ss_pred             hCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 020239          256 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL  306 (329)
Q Consensus       256 ~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~  306 (329)
                      .|+.+++++|+++|++++.+|..|.||+++|+..++.+++++|+++|++.-
T Consensus       260 ~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~  310 (480)
T PHA03100        260 NNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK  310 (480)
T ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence            999999999999999999999999999999999999999999999999643

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-37  Score=233.71  Aligned_cols=178  Identities=28%  Similarity=0.358  Sum_probs=165.3

Q ss_pred             CccchhhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhc-CCCccccCCCCCcHHH
Q 020239          110 GKHEAELALRFNSAAYHGDLYQLKGLIR-AGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLL  187 (329)
Q Consensus       110 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~  187 (329)
                      ...+.++.+|||+|+..|+.+++++|++ .+..+|.+|..|+||||.|+..|+.++|+-|+.+ |+++|..+..|.||||
T Consensus        32 ~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LH  111 (226)
T KOG4412|consen   32 ARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLH  111 (226)
T ss_pred             ccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceeh
Confidence            3455588899999999999999999994 5788999999999999999999999999999999 9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHH
Q 020239          188 EAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  265 (329)
Q Consensus       188 ~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~L  265 (329)
                      +|+..|+.+++++|+++|+.++..|  +.||||.|+..|..+++++|+..|+.+|.+|..|+||||.|...|+.++...|
T Consensus       112 yAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lL  191 (226)
T KOG4412|consen  112 YAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLL  191 (226)
T ss_pred             hhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHH
Confidence            9999999999999999999999877  56999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCccCCCCCCCcHHHHHHH
Q 020239          266 LEAGASVFTKDRWGNTPLDEGRM  288 (329)
Q Consensus       266 l~~g~~~~~~~~~g~t~l~~A~~  288 (329)
                      +++|++++..|+.| ||+..|.-
T Consensus       192 V~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  192 VRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             HHhccceeeccccC-chHHHHHH
Confidence            99999999999988 99877654

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.7e-35  Score=271.17  Aligned_cols=195  Identities=28%  Similarity=0.376  Sum_probs=178.9

Q ss_pred             ccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHH
Q 020239          108 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  187 (329)
Q Consensus       108 ~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~  187 (329)
                      .....+..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus       116 d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~  195 (434)
T PHA02874        116 DVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLH  195 (434)
T ss_pred             CCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            34445667889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCcC--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhC-cHHHHHH
Q 020239          188 EAIKCGHDGVTSLLVKEGASLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG-LYLMAKL  264 (329)
Q Consensus       188 ~A~~~~~~~~v~~Ll~~~~~~~~~--~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-~~~iv~~  264 (329)
                      +|+..|+.+++++|++.|++++..  .+.||||.|+..+. +.+++|+ .|++++.+|..|+||||+|+..+ +.+++++
T Consensus       196 ~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~  273 (434)
T PHA02874        196 NAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDI  273 (434)
T ss_pred             HHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHH
Confidence            999999999999999999988765  46799999999875 5666666 68999999999999999999876 7999999


Q ss_pred             HHHCCCCccCCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCC
Q 020239          265 LLEAGASVFTKDRWGNTPLDEGRMCG-NKNLIKLLEDAKCT  304 (329)
Q Consensus       265 Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~iv~~L~~~~~~  304 (329)
                      |+++|++++.+|..|.|||++|++.+ ..++++.|++++..
T Consensus       274 Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~  314 (434)
T PHA02874        274 LLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVL  314 (434)
T ss_pred             HHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCc
Confidence            99999999999999999999999988 67899999988764

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.3e-35  Score=253.09  Aligned_cols=182  Identities=18%  Similarity=0.203  Sum_probs=168.5

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCC-CcHHHHHHHcCCH
Q 020239          117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG-NTPLLEAIKCGHD  195 (329)
Q Consensus       117 ~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~l~~A~~~~~~  195 (329)
                      .||||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..| .||||+|+..|+.
T Consensus        62 ~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~  141 (284)
T PHA02791         62 EFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDV  141 (284)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCH
Confidence            599999999999999999999999999999999999999999999999999999999999988887 4899999999999


Q ss_pred             HHHHHHHHcCCCCC-cCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchH-HHHHHHhCcHHHHHHHHHCCCCcc
Q 020239          196 GVTSLLVKEGASLN-VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP-LHVAASEGLYLMAKLLLEAGASVF  273 (329)
Q Consensus       196 ~~v~~Ll~~~~~~~-~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~iv~~Ll~~g~~~~  273 (329)
                      +++++|++++.+.. ...+.||||+|+..|+.++++.|+++|++++.++..|.|| ||+|+..|+.+++++|+++|++++
T Consensus       142 eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in  221 (284)
T PHA02791        142 SIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIY  221 (284)
T ss_pred             HHHHHHHhcCCcccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCc
Confidence            99999999876543 2347899999999999999999999999999999999987 999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239          274 TKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  305 (329)
Q Consensus       274 ~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~  305 (329)
                      .+|..| ||+      ++.|++++|+++-+..
T Consensus       222 ~~~~~~-~~l------~~~e~~~~ll~~~~~~  246 (284)
T PHA02791        222 SVNLEN-VLL------DDAEIAKMIIEKHVEY  246 (284)
T ss_pred             cCcccC-ccC------CCHHHHHHHHHhhhhh
Confidence            999854 666      7999999999987643

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-35  Score=271.18  Aligned_cols=196  Identities=22%  Similarity=0.159  Sum_probs=152.9

Q ss_pred             ccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCcc-ccCCCCCcHHHHH
Q 020239          111 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN-IKDKFGNTPLLEA  189 (329)
Q Consensus       111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A  189 (329)
                      ..+..+.||||.|+..|+.+++++|++.|++++..+..+.||||.|+..|+.+++++|++.|...+ ..+..|.||||+|
T Consensus        30 ~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A  109 (413)
T PHA02875         30 FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLA  109 (413)
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHH
Confidence            344456788888888888888888888888777777777888888888888888888888776553 3455678888888


Q ss_pred             HHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHH
Q 020239          190 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE  267 (329)
Q Consensus       190 ~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  267 (329)
                      +..|+.+++++|++.|++++..+  +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++
T Consensus       110 ~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~  189 (413)
T PHA02875        110 TILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLD  189 (413)
T ss_pred             HHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            88888888888888888777654  5678888888888888888888888888888888888888888888888888888


Q ss_pred             CCCCccCCCCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCc
Q 020239          268 AGASVFTKDRWGN-TPLDEGRMCGNKNLIKLLEDAKCTQL  306 (329)
Q Consensus       268 ~g~~~~~~~~~g~-t~l~~A~~~~~~~iv~~L~~~~~~~~  306 (329)
                      +|++++..+..|. ||+++|+..|+.+++++|+++|++.-
T Consensus       190 ~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n  229 (413)
T PHA02875        190 SGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN  229 (413)
T ss_pred             CCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcc
Confidence            8888887777664 67777888888888888888887653

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.5e-35  Score=267.07  Aligned_cols=188  Identities=26%  Similarity=0.272  Sum_probs=154.4

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 020239          115 ELALRFNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  193 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  193 (329)
                      .+.+|||.|+..|+.+++++|++.|.+.+ ..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus        67 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~  146 (413)
T PHA02875         67 DIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMG  146 (413)
T ss_pred             CcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence            34578899999999999999998887653 44567889999999999999999999999998888888899999999999


Q ss_pred             CHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCc-hHHHHHHHhCcHHHHHHHHHCCC
Q 020239          194 HDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHR-TPLHVAASEGLYLMAKLLLEAGA  270 (329)
Q Consensus       194 ~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~iv~~Ll~~g~  270 (329)
                      +.+++++|+++|++++..+  +.||||+|+..|+.+++++|++.|++++..+..|. ||+|+|+..|+.+++++|+++|+
T Consensus       147 ~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~ga  226 (413)
T PHA02875        147 DIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGA  226 (413)
T ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCc
Confidence            9999999999888877654  66889999999999999999999999888887774 78888999999999999999998


Q ss_pred             CccCC---CCCCCcHHHHHHH---cCCHHHHHHHHHcC
Q 020239          271 SVFTK---DRWGNTPLDEGRM---CGNKNLIKLLEDAK  302 (329)
Q Consensus       271 ~~~~~---~~~g~t~l~~A~~---~~~~~iv~~L~~~~  302 (329)
                      +++..   +..|.||++.+..   ....+.++.++.+-
T Consensus       227 d~n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li~~i  264 (413)
T PHA02875        227 DCNIMFMIEGEECTILDMICNMCTNLESEAIDALIADI  264 (413)
T ss_pred             CcchHhhcCCCchHHHHHHHhhcCCcccHHHHHHHHHH
Confidence            88764   5567888887654   33457777777543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-34  Score=276.86  Aligned_cols=197  Identities=25%  Similarity=0.326  Sum_probs=143.9

Q ss_pred             cCccchhhhHHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCCCChHHHHHHHcC-cHHHHHHHHhcCCCccccCCCCCcHH
Q 020239          109 IGKHEAELALRFNSAAYHGDL-YQLKGLIRAGADLNKTDYDGRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPL  186 (329)
Q Consensus       109 ~~~~~~~~~~~l~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~l  186 (329)
                      .+..+..+.||||+|+..|+. +++++|++.|++++..|..|.||||+|+..| +.+++++|+..|++++..|..|.|||
T Consensus       266 vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpL  345 (682)
T PHA02876        266 VNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPL  345 (682)
T ss_pred             CCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHH
Confidence            334455566777777777775 4777777777777777777777777777777 47777777777777777777777777


Q ss_pred             HHHHHcC-CHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCc-HHHH
Q 020239          187 LEAIKCG-HDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL-YLMA  262 (329)
Q Consensus       187 ~~A~~~~-~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~iv  262 (329)
                      |+|+..+ ..+++++|++.|++++..+  +.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++ ..++
T Consensus       346 h~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~v  425 (682)
T PHA02876        346 HQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSV  425 (682)
T ss_pred             HHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHH
Confidence            7777653 5667777777777777654  5577777777777777777777777777777777777777776554 4567


Q ss_pred             HHHHHCCCCccCCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCC
Q 020239          263 KLLLEAGASVFTKDRWGNTPLDEGRMCG-NKNLIKLLEDAKCTQ  305 (329)
Q Consensus       263 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~iv~~L~~~~~~~  305 (329)
                      ++|+++|++++.+|..|+||||+|+..+ +.+++++|+++|+..
T Consensus       426 k~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~  469 (682)
T PHA02876        426 KTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADV  469 (682)
T ss_pred             HHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCC
Confidence            7777777777777777777777777765 567777777777654

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-35  Score=222.50  Aligned_cols=191  Identities=31%  Similarity=0.424  Sum_probs=172.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCC-CCCCCCC-CCChHHHHHHHcCcHHHHHHHHh-cCCCccccCCCCCcHHHHHHHcCC
Q 020239          118 LRFNSAAYHGDLYQLKGLIRAGA-DLNKTDY-DGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIKCGH  194 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~~~-~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~  194 (329)
                      ++.+.++...-..-++-+++... .++.++. +|+||||+||..|+.+++++|++ -+..+|..|..|+||||+|+..|+
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~   84 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGN   84 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCc
Confidence            44556666666667788887765 5676765 99999999999999999999995 578899999999999999999999


Q ss_pred             HHHHHHHHHc-CCCCCcC--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCC
Q 020239          195 DGVTSLLVKE-GASLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  271 (329)
Q Consensus       195 ~~~v~~Ll~~-~~~~~~~--~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~  271 (329)
                      .++|+-|+.+ |+++|..  .+.|+||+|+..|+.+++++|++.|+.++.+|..|.||||.|+..|.++++++|+..|+.
T Consensus        85 ~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~  164 (226)
T KOG4412|consen   85 DEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP  164 (226)
T ss_pred             HHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCC
Confidence            9999999988 9999875  467999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 020239          272 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE  308 (329)
Q Consensus       272 ~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~  308 (329)
                      +|.+|..|+||||.|..-|+.+....|.++|++....
T Consensus       165 ~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~e  201 (226)
T KOG4412|consen  165 LNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDRE  201 (226)
T ss_pred             CCcccccCccHHHHHHhccCchHHHHHHHhccceeec
Confidence            9999999999999999999999999999999865433

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=3.4e-34  Score=261.12  Aligned_cols=195  Identities=22%  Similarity=0.278  Sum_probs=175.9

Q ss_pred             cccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC--cHHHHHHHHhcCCCccc-cCCCCC
Q 020239          107 FHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG--YEDITLFLIQKGVDINI-KDKFGN  183 (329)
Q Consensus       107 ~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~-~~~~g~  183 (329)
                      ...+..+..+.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+  ..+++++|+++|++++. .+..|.
T Consensus        63 advn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~  142 (446)
T PHA02946         63 YSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGC  142 (446)
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCC
Confidence            344566778899999999999999999999999999999999999999998866  48999999999999995 688899


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhC--
Q 020239          184 TPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARG--DSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG--  257 (329)
Q Consensus       184 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--  257 (329)
                      |||+ |+..++.+++++|++.|++++..+  +.||||+|+..+  +.+++++|++.|++++.+|.+|.||||+|+..+  
T Consensus       143 tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~  221 (446)
T PHA02946        143 GPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVK  221 (446)
T ss_pred             cHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCC
Confidence            9997 667799999999999999888765  679999988755  479999999999999999999999999999986  


Q ss_pred             cHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCC-HHHHHHHHHcCC
Q 020239          258 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN-KNLIKLLEDAKC  303 (329)
Q Consensus       258 ~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~iv~~L~~~~~  303 (329)
                      +.+++++|++ |++++.+|..|.||||+|+..++ .+++++|+++|+
T Consensus       222 ~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~  267 (446)
T PHA02946        222 NVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSN  267 (446)
T ss_pred             cHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCC
Confidence            8899999995 89999999999999999999988 588999988875

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.9e-33  Score=257.60  Aligned_cols=192  Identities=29%  Similarity=0.316  Sum_probs=172.4

Q ss_pred             chhhhHHHHHHHHcCCHHHHHHHHHcCC-----------------------CCCCCCCCCChHHHHHHHcCcHHHHHHHH
Q 020239          113 EAELALRFNSAAYHGDLYQLKGLIRAGA-----------------------DLNKTDYDGRSPLHLATSRGYEDITLFLI  169 (329)
Q Consensus       113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~-----------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  169 (329)
                      +..+.+||+.|+..|+.+++++|++.|+                       +++.++..|.||||+|+..|+.+++++|+
T Consensus        65 ~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll  144 (434)
T PHA02874         65 NTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLF  144 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHH
Confidence            3345578888888888888888877654                       56678889999999999999999999999


Q ss_pred             hcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCc
Q 020239          170 QKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHR  247 (329)
Q Consensus       170 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~  247 (329)
                      ++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|++.|++++.++..|.
T Consensus       145 ~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~  224 (434)
T PHA02874        145 EYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGF  224 (434)
T ss_pred             hCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCC
Confidence            9999999999999999999999999999999999999887654  67999999999999999999999999999999999


Q ss_pred             hHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCCc
Q 020239          248 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG-NKNLIKLLEDAKCTQL  306 (329)
Q Consensus       248 t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~iv~~L~~~~~~~~  306 (329)
                      ||||.|+..+. +++++|+ .|++++.+|..|+||||+|+..+ +.+++++|+++|+..-
T Consensus       225 TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n  282 (434)
T PHA02874        225 TPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADIS  282 (434)
T ss_pred             CHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCC
Confidence            99999999765 5667776 68999999999999999999976 7899999999998653

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=7.4e-34  Score=263.63  Aligned_cols=285  Identities=16%  Similarity=0.124  Sum_probs=207.1

Q ss_pred             HHHhHhCchhhhhHhhhhcccccccchhhhchhhhhhhcccc---cccHHHHHHHHHHhhhcccCchhHHHhcCCccchh
Q 020239            6 AVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFK---GCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQL   82 (329)
Q Consensus         6 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~---~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (329)
                      ..|+..++.++|++|++.|++++..-...... .   ..+..   ....+.+..+...+..-.       .......+.+
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~-L---h~a~~~~~~~~~~iv~~Ll~~Gadin-------~~~~~g~TpL   87 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGADVNFRGEYGKTP-L---HLYLHYSSEKVKDIVRLLLEAGADVN-------APERCGFTPL   87 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCCcccCCCCCCCH-H---HHHHHhcCCChHHHHHHHHHCCCCCC-------CCCCCCCCHH
Confidence            46788899999999999999887442211110 0   00111   124444444443222100       0001112222


Q ss_pred             hhhhhcccCCchhhhhhhhccccccccCccchhhhHHHHHHH--HcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC
Q 020239           83 YFVCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAA--YHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG  160 (329)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g  160 (329)
                      ..++....  ...+....+  +.....+..+..+.||||.|+  ..++.+++++|++.|++++..+..|.||||+|+..+
T Consensus        88 h~A~~~~~--~~~iv~lLl--~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~  163 (471)
T PHA03095         88 HLYLYNAT--TLDVIKLLI--KAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSR  163 (471)
T ss_pred             HHHHHcCC--cHHHHHHHH--HcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            22222111  112222222  223344556667789999998  556888999999999999988999999999888865


Q ss_pred             --cHHHHHHHHhcCCCccccCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCH--HHHHHH
Q 020239          161 --YEDITLFLIQKGVDINIKDKFGNTPLLEAIKC--GHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDS--DLLKRV  232 (329)
Q Consensus       161 --~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~--~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~--~~v~~L  232 (329)
                        +.+++++|+++|++++..+..|.||||+|+..  +..++++.|++.|++++..+  +.||||+|+..|+.  .+++.|
T Consensus       164 ~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~l  243 (471)
T PHA03095        164 NANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPL  243 (471)
T ss_pred             CCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHH
Confidence              67889999999998888888899999988865  66788999999998888765  66899999998864  678888


Q ss_pred             HHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239          233 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  305 (329)
Q Consensus       233 l~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~  305 (329)
                      ++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..|+.+++++|++.+++.
T Consensus       244 l~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        244 LIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988764

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.6e-33  Score=267.91  Aligned_cols=201  Identities=25%  Similarity=0.273  Sum_probs=174.6

Q ss_pred             ccccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHh---------------
Q 020239          106 TFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ---------------  170 (329)
Q Consensus       106 ~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---------------  170 (329)
                      ....+..+..+.||||+|+..|+.++|++|++.|++++..+..|.||||.|+..|+.+++++|++               
T Consensus       168 Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~a  247 (682)
T PHA02876        168 GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKA  247 (682)
T ss_pred             CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHH
Confidence            33445567778999999999999999999999999999999999999999999888887766554               


Q ss_pred             --------------cCCCccccCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCCCcCC--CCcHHHHHHHcC-CHHHHHHH
Q 020239          171 --------------KGVDINIKDKFGNTPLLEAIKCGHD-GVTSLLVKEGASLNVDD--AGSFLCIAVARG-DSDLLKRV  232 (329)
Q Consensus       171 --------------~g~~~~~~~~~g~t~l~~A~~~~~~-~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g-~~~~v~~L  232 (329)
                                    .|++++..+..|.||||+|+..++. +++++|++.|++++..+  +.||||+|+..| +.++++.|
T Consensus       248 i~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~L  327 (682)
T PHA02876        248 IRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTL  327 (682)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHH
Confidence                          4556677778899999999999886 58999999999888764  679999999998 58999999


Q ss_pred             HHCCCCCCCCCCCCchHHHHHHHh-CcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 020239          233 LSNGVDPNSRDYDHRTPLHVAASE-GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL  306 (329)
Q Consensus       233 l~~g~~~~~~~~~g~t~L~~A~~~-~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~  306 (329)
                      +..|++++..|..|.||||+|+.. ++.++++.|++.|++++.+|..|.||||+|+..|+.+++++|+++|+...
T Consensus       328 l~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~  402 (682)
T PHA02876        328 IMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE  402 (682)
T ss_pred             HHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence            999999999999999999999885 47889999999999999999999999999999999999999999887653

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.3e-33  Score=260.86  Aligned_cols=217  Identities=27%  Similarity=0.328  Sum_probs=198.5

Q ss_pred             cCccchhhhHHHHH-----HHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHH--HcCcHHHHHHHHhcCCCccccCCC
Q 020239          109 IGKHEAELALRFNS-----AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLAT--SRGYEDITLFLIQKGVDINIKDKF  181 (329)
Q Consensus       109 ~~~~~~~~~~~l~~-----A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~  181 (329)
                      ....+..+.+|||.     |+..|+.+++++|++.|++++..+..|.||||+|+  ..|+.+++++|+++|++++..+..
T Consensus        61 ~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~  140 (480)
T PHA03100         61 INSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSD  140 (480)
T ss_pred             CCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCC
Confidence            33445567799999     99999999999999999999999999999999999  999999999999999999999999


Q ss_pred             CCcHHHHHHHcC--CHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC------chHHH
Q 020239          182 GNTPLLEAIKCG--HDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDH------RTPLH  251 (329)
Q Consensus       182 g~t~l~~A~~~~--~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g------~t~L~  251 (329)
                      |.||||+|+..|  +.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++..+..|      .||||
T Consensus       141 g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~  220 (480)
T PHA03100        141 GENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLH  220 (480)
T ss_pred             CCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHH
Confidence            999999999999  9999999999999988654  6799999999999999999999999999999988      89999


Q ss_pred             HHHHhCc--HHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc--------ccccchhHHHHH
Q 020239          252 VAASEGL--YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF--------HYCSQGMIGIAE  321 (329)
Q Consensus       252 ~A~~~~~--~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~--------~~~~~~~~~~~~  321 (329)
                      .|+..|+  .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+......        .+...++.++++
T Consensus       221 ~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~  300 (480)
T PHA03100        221 IAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFK  300 (480)
T ss_pred             HHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHH
Confidence            9999999  999999999999999999999999999999999999999999999543221        234557888888


Q ss_pred             hhhc
Q 020239          322 NLLL  325 (329)
Q Consensus       322 ~l~~  325 (329)
                      +|+.
T Consensus       301 ~Ll~  304 (480)
T PHA03100        301 LLLN  304 (480)
T ss_pred             HHHh
Confidence            8875

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=4.6e-33  Score=253.70  Aligned_cols=282  Identities=20%  Similarity=0.121  Sum_probs=204.1

Q ss_pred             chHHHhHhCchhhhhHhhhhcccccccchhhhchhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhh
Q 020239            4 GPAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLY   83 (329)
Q Consensus         4 ~~~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (329)
                      ++.+|+..|+.++|++|+++|++++..-.....+ .. ..........+.+..++.....-.    .  .......+.+.
T Consensus        75 pLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~Tp-Lh-~A~~~~~~~~e~v~lLl~~Gadin----~--~~d~~g~tpL~  146 (446)
T PHA02946         75 PLHIASKINNNRIVAMLLTHGADPNACDKQHKTP-LY-YLSGTDDEVIERINLLVQYGAKIN----N--SVDEEGCGPLL  146 (446)
T ss_pred             HHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCH-HH-HHHHcCCchHHHHHHHHHcCCCcc----c--ccCCCCCcHHH
Confidence            5678999999999999999999887542222111 00 000011112233333333221100    0  00011111121


Q ss_pred             hhhhcccCCchhhhhhhhccccccccCccchhhhHHHHHHHHcCC--HHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC-
Q 020239           84 FVCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGD--LYQLKGLIRAGADLNKTDYDGRSPLHLATSRG-  160 (329)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~--~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g-  160 (329)
                          ++......+....+.  .....+..+..+.+|||.|+..++  .+++++|++.|++++.+|..|.||||+|+..| 
T Consensus       147 ----aa~~~~~~vv~~Ll~--~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~  220 (446)
T PHA02946        147 ----ACTDPSERVFKKIMS--IGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTV  220 (446)
T ss_pred             ----HHHCCChHHHHHHHh--ccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCC
Confidence                222222222222222  233445566778899999887654  68999999999999999999999999999986 


Q ss_pred             -cHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCCc-----------------------CCCCc
Q 020239          161 -YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH-DGVTSLLVKEGASLNV-----------------------DDAGS  215 (329)
Q Consensus       161 -~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~~~v~~Ll~~~~~~~~-----------------------~~~~~  215 (329)
                       +.+++++|++ |++++.+|..|.||||+|+..++ .+++++|+++|...+.                       ..+.|
T Consensus       221 ~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~T  299 (446)
T PHA02946        221 KNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDST  299 (446)
T ss_pred             CcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCC
Confidence             8899999985 89999999999999999999988 4899999998764311                       12459


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHH
Q 020239          216 FLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI  295 (329)
Q Consensus       216 ~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv  295 (329)
                      |||+|+..|+.+++++|+++|.       .|.||||+|+..++.+++++|+++|++++.. ..|.||+|+|+..++.+++
T Consensus       300 pLh~Aa~~g~~eivk~Ll~~~~-------~~~t~L~~A~~~~~~~~v~~Ll~~ga~~n~~-~~G~t~l~~a~~~~~~~~~  371 (446)
T PHA02946        300 DFKMAVEVGSIRCVKYLLDNDI-------ICEDAMYYAVLSEYETMVDYLLFNHFSVDSV-VNGHTCMSECVRLNNPVIL  371 (446)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCC-------ccccHHHHHHHhCHHHHHHHHHHCCCCCCCc-cccccHHHHHHHcCCHHHH
Confidence            9999999999999999999874       4789999999999999999999999999986 5799999999999999999


Q ss_pred             HHHHHcCCCCccc
Q 020239          296 KLLEDAKCTQLSE  308 (329)
Q Consensus       296 ~~L~~~~~~~~~~  308 (329)
                      +.|+++.++....
T Consensus       372 ~~ll~~~~~~~~~  384 (446)
T PHA02946        372 SKLMLHNPTSETM  384 (446)
T ss_pred             HHHHhcCccHHHH
Confidence            9999987765433

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3.7e-33  Score=258.62  Aligned_cols=190  Identities=32%  Similarity=0.416  Sum_probs=159.4

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcH---------------------------------
Q 020239          116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYE---------------------------------  162 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~---------------------------------  162 (329)
                      ..+|||.|+..|+.++|++|++.|++++.++..|.||||+||..|+.                                 
T Consensus        37 ~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei  116 (477)
T PHA02878         37 PFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEI  116 (477)
T ss_pred             CcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHH
Confidence            44788888888888888888888888888888888888888765433                                 


Q ss_pred             -------------------------------HHHHHHHhcCCCccccCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 020239          163 -------------------------------DITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSLLVKEGASLNV  210 (329)
Q Consensus       163 -------------------------------~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~  210 (329)
                                                     +++++|+++|++++..+.. |.||||+|+..|+.+++++|++.|++++.
T Consensus       117 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~  196 (477)
T PHA02878        117 FKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI  196 (477)
T ss_pred             HHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC
Confidence                                           2666777778888888887 99999999999999999999999988887


Q ss_pred             CC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHh-CcHHHHHHHHHCCCCccCCCC-CCCcHHHHH
Q 020239          211 DD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASE-GLYLMAKLLLEAGASVFTKDR-WGNTPLDEG  286 (329)
Q Consensus       211 ~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~iv~~Ll~~g~~~~~~~~-~g~t~l~~A  286 (329)
                      .+  +.||||.|+..|+.+++++|++.|++++.+|..|.||||+|+.. ++.+++++|+++|++++.++. .|.||||+|
T Consensus       197 ~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        197 PDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS  276 (477)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH
Confidence            64  66899999999999999999999999999999999999999875 688999999999999988876 789999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCcc
Q 020239          287 RMCGNKNLIKLLEDAKCTQLS  307 (329)
Q Consensus       287 ~~~~~~~iv~~L~~~~~~~~~  307 (329)
                        .++.+++++|+++|++.-.
T Consensus       277 --~~~~~~v~~Ll~~gadin~  295 (477)
T PHA02878        277 --IKSERKLKLLLEYGADINS  295 (477)
T ss_pred             --ccCHHHHHHHHHCCCCCCC
Confidence              5678899999999886543

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1e-32  Score=256.46  Aligned_cols=282  Identities=17%  Similarity=0.196  Sum_probs=208.9

Q ss_pred             hHhCchhhhhHhhhhcccccccchhhhchhhhhhhcc-cccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhh
Q 020239            9 RACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSL-FKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCH   87 (329)
Q Consensus         9 a~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~l-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (329)
                      +..+..++|++|++.|++++.. ......   -..++ ..+.+.+.+..++..+..--.        .+...+.+..+..
T Consensus        11 ~~~~~~~~v~~LL~~GadvN~~-~~g~t~---l~~~~~~~~~~~~iv~~Ll~~GAdvn~--------~~~~~tpL~~a~~   78 (494)
T PHA02989         11 SDTVDKNALEFLLRTGFDVNEE-YRGNSI---LLLYLKRKDVKIKIVKLLIDNGADVNY--------KGYIETPLCAVLR   78 (494)
T ss_pred             CCcCcHHHHHHHHHcCCCcccc-cCCCCH---HHHHHhcCCCChHHHHHHHHcCCCccC--------CCCCCCcHHHHHh
Confidence            3357889999999999998765 211111   00111 123345666666554332100        0111222222221


Q ss_pred             cc-c--CCchhhhhhhhccccccccCccchhhhHHHHHHHHc---CCHHHHHHHHHcCCCC-CCCCCCCChHHHHHHHc-
Q 020239           88 GV-L--GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYH---GDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSR-  159 (329)
Q Consensus        88 ~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~---g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~-  159 (329)
                      .. .  .+...+....+..  ....+..+..+.|||+.|+..   |+.+++++|+++|+++ +.++..|.||||+|+.. 
T Consensus        79 ~~~~~~~~~~~iv~~Ll~~--Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~  156 (494)
T PHA02989         79 NREITSNKIKKIVKLLLKF--GADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESF  156 (494)
T ss_pred             ccCcchhhHHHHHHHHHHC--CCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhc
Confidence            11 1  1111222222233  333455666788999988765   6899999999999999 78999999999998764 


Q ss_pred             -CcHHHHHHHHhcCCCccc-cCCCCCcHHHHHHHcC----CHHHHHHHHHcCCCCCcCC--CCcHHHHHHHc------CC
Q 020239          160 -GYEDITLFLIQKGVDINI-KDKFGNTPLLEAIKCG----HDGVTSLLVKEGASLNVDD--AGSFLCIAVAR------GD  225 (329)
Q Consensus       160 -g~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~----~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~------g~  225 (329)
                       ++.+++++|+++|++++. .+..|.||||.|++.+    +.+++++|+++|++++..+  +.+++|.++..      +.
T Consensus       157 ~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~  236 (494)
T PHA02989        157 SVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKE  236 (494)
T ss_pred             cCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccc
Confidence             689999999999999988 6788999999998764    8899999999999998876  56889877654      35


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239          226 SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  305 (329)
Q Consensus       226 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~  305 (329)
                      .+++++|+. |++++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..|+.+++++|++.++..
T Consensus       237 ~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        237 FKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPGK  315 (494)
T ss_pred             hHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCh
Confidence            677887654 6999999999999999999999999999999999999999999999999999999999999999998754

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=1.2e-32  Score=259.16  Aligned_cols=187  Identities=22%  Similarity=0.174  Sum_probs=160.2

Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHH--cCcHHHHHHHHhcCCCccccCCCCCcHHHHHHH--------
Q 020239          122 SAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATS--RGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK--------  191 (329)
Q Consensus       122 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~--------  191 (329)
                      .|+..|+.+++++|++.|++++.+|..|.||||+|+.  .++.+++++|+++|++++.+|..|.||||+|+.        
T Consensus       290 ~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~l  369 (764)
T PHA02716        290 TLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNIL  369 (764)
T ss_pred             HHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccc
Confidence            3677899999999999999999999999999999865  468899999999999999999999999999875        


Q ss_pred             ------cCCHHHHHHHHHcCCCCCcCC--CCcHHHH----HHHcCCHHHHHHHHHCCC----------------------
Q 020239          192 ------CGHDGVTSLLVKEGASLNVDD--AGSFLCI----AVARGDSDLLKRVLSNGV----------------------  237 (329)
Q Consensus       192 ------~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~----A~~~g~~~~v~~Ll~~g~----------------------  237 (329)
                            .++.+++++|+++|++++..+  +.||||.    |...++.+++++|++.|+                      
T Consensus       370 d~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~  449 (764)
T PHA02716        370 DPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCI  449 (764)
T ss_pred             cccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhh
Confidence                  367899999999999998765  6799983    233567888888877542                      


Q ss_pred             ---------------------------------------CCCCCCCCCchHHHHHHHhCcH-----HHHHHHHHCCCCcc
Q 020239          238 ---------------------------------------DPNSRDYDHRTPLHVAASEGLY-----LMAKLLLEAGASVF  273 (329)
Q Consensus       238 ---------------------------------------~~~~~~~~g~t~L~~A~~~~~~-----~iv~~Ll~~g~~~~  273 (329)
                                                             +++..|..|+||||+|+..|+.     +++++|+++|++++
T Consensus       450 lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN  529 (764)
T PHA02716        450 IHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNIN  529 (764)
T ss_pred             HHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCc
Confidence                                                   2244577899999999999876     55699999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCH-----HHHHHHHHcCCCCccc
Q 020239          274 TKDRWGNTPLDEGRMCGNK-----NLIKLLEDAKCTQLSE  308 (329)
Q Consensus       274 ~~~~~g~t~l~~A~~~~~~-----~iv~~L~~~~~~~~~~  308 (329)
                      .+|..|+||||+|+.+|+.     ++|+.|+++|+..-..
T Consensus       530 ~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~ga~~~~~  569 (764)
T PHA02716        530 IPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKRPNVDIV  569 (764)
T ss_pred             ccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcCCCcchH
Confidence            9999999999999999976     9999999999875333

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.4e-32  Score=254.74  Aligned_cols=173  Identities=33%  Similarity=0.412  Sum_probs=160.1

Q ss_pred             CHHHHHHHHHcCCCCCCCCCC-CChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239          128 DLYQLKGLIRAGADLNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA  206 (329)
Q Consensus       128 ~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~  206 (329)
                      +.+++++|++.|++++..+.. |.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..|+.+++++|++.|+
T Consensus       146 ~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga  225 (477)
T PHA02878        146 EAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGA  225 (477)
T ss_pred             HHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            346999999999999999988 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCC--CCcHHHHHHHc-CCHHHHHHHHHCCCCCCCCCC-CCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcH
Q 020239          207 SLNVDD--AGSFLCIAVAR-GDSDLLKRVLSNGVDPNSRDY-DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP  282 (329)
Q Consensus       207 ~~~~~~--~~~~l~~A~~~-g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~  282 (329)
                      +++..+  +.||||+|+.. ++.+++++|+++|++++.++. .|.||||+|  .++.+++++|+++|+|++..|..|.||
T Consensus       226 ~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~Tp  303 (477)
T PHA02878        226 STDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTP  303 (477)
T ss_pred             CCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            998765  67999999976 789999999999999999886 799999999  578899999999999999999999999


Q ss_pred             HHHHHHcC-CHHHHHHHHHcC
Q 020239          283 LDEGRMCG-NKNLIKLLEDAK  302 (329)
Q Consensus       283 l~~A~~~~-~~~iv~~L~~~~  302 (329)
                      |++|+..+ ..+++++|+++.
T Consensus       304 L~~A~~~~~~~~~~~~li~~~  324 (477)
T PHA02878        304 LSSAVKQYLCINIGRILISNI  324 (477)
T ss_pred             HHHHHHHcCccchHHHHHHHH
Confidence            99999864 467888887764

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=8.1e-32  Score=249.97  Aligned_cols=219  Identities=26%  Similarity=0.325  Sum_probs=194.3

Q ss_pred             cccCccchhhhHHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCChHHHHHH--HcCcHHHHHHHHhcCCCccccCCCCC
Q 020239          107 FHIGKHEAELALRFNSAAYHG-DLYQLKGLIRAGADLNKTDYDGRSPLHLAT--SRGYEDITLFLIQKGVDINIKDKFGN  183 (329)
Q Consensus       107 ~~~~~~~~~~~~~l~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~~g~  183 (329)
                      ...+..+..+.||||+|+..| +.+++++|++.|++++.++..|.||||+|+  ..++.+++++|+++|++++..|..|.
T Consensus        74 adin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~  153 (471)
T PHA03095         74 ADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGM  153 (471)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCC
Confidence            344555668899999999999 599999999999999999999999999999  55689999999999999999999999


Q ss_pred             cHHHHHHHcC--CHHHHHHHHHcCCCCCcCC--CCcHHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhC
Q 020239          184 TPLLEAIKCG--HDGVTSLLVKEGASLNVDD--AGSFLCIAVAR--GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG  257 (329)
Q Consensus       184 t~l~~A~~~~--~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  257 (329)
                      ||||+|+..+  ..+++++|++.|++++..+  +.||||+++..  ++.++++.|++.|++++.+|..|.||||+|+..|
T Consensus       154 tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~  233 (471)
T PHA03095        154 TPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGS  233 (471)
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            9999998876  5789999999999887664  66999999875  7889999999999999999999999999999998


Q ss_pred             cH--HHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccc--------cccchhHHHHHhhhc
Q 020239          258 LY--LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH--------YCSQGMIGIAENLLL  325 (329)
Q Consensus       258 ~~--~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~~--------~~~~~~~~~~~~l~~  325 (329)
                      +.  .+++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|++......        +...++.++++.|+.
T Consensus       234 ~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~  311 (471)
T PHA03095        234 SCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA  311 (471)
T ss_pred             CchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            74  689999999999999999999999999999999999999999997643322        345678888888875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=100.00  E-value=1.4e-32  Score=268.62  Aligned_cols=265  Identities=30%  Similarity=0.466  Sum_probs=225.6

Q ss_pred             ccchhhhchhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccCCc-----hhhhhhhhc-
Q 020239           29 RKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLGKE-----SNLRLKQVE-  102 (329)
Q Consensus        29 ~~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-  102 (329)
                      +++.+.++.+.++.+++|++++++.+.++...+..+++.|++.++.+|+..+.+|++..+.+.-.     ....+..+. 
T Consensus       365 ~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~  444 (823)
T PLN03192        365 KSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGC  444 (823)
T ss_pred             HHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccC
Confidence            34677778888889999999999999999999999999999999999999988888887666110     000000000 


Q ss_pred             ccc-------------------------------------------------------------------ccccCccchh
Q 020239          103 SDI-------------------------------------------------------------------TFHIGKHEAE  115 (329)
Q Consensus       103 ~~~-------------------------------------------------------------------~~~~~~~~~~  115 (329)
                      .+.                                                                   .......+..
T Consensus       445 Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~l~~l~v~~ll~~~~~~~~~~~  524 (823)
T PLN03192        445 GDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKELHDLNVGDLLGDNGGEHDDPN  524 (823)
T ss_pred             CCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhhhccccHHHHHhhcccccCCcc
Confidence            000                                                                   0000011223


Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239          116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  195 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  195 (329)
                      ..++|+.||..|+.++++.|++.|+++|..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||.|+..|+.
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~  604 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHH  604 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCC
Q 020239          196 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK  275 (329)
Q Consensus       196 ~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~  275 (329)
                      +++++|++.+...+...+.++||.|+..|+.++++.|+++|++++.+|.+|.||||+|+..|+.+++++|+++|++++..
T Consensus       605 ~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~  684 (823)
T PLN03192        605 KIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKA  684 (823)
T ss_pred             HHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCC
Confidence            99999999988888778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCC-CcHHHHHHHcCCHH
Q 020239          276 DRWG-NTPLDEGRMCGNKN  293 (329)
Q Consensus       276 ~~~g-~t~l~~A~~~~~~~  293 (329)
                      |..| .||.+++......+
T Consensus       685 ~~~g~~t~~~l~~~~~~~~  703 (823)
T PLN03192        685 NTDDDFSPTELRELLQKRE  703 (823)
T ss_pred             CCCCCCCHHHHHHHHHHhh
Confidence            9988 89998876644433

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.7e-32  Score=253.29  Aligned_cols=198  Identities=27%  Similarity=0.301  Sum_probs=153.0

Q ss_pred             cCccchhhhHHHHHHHHc-----CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC---cHHHHHHHHhcCCCccccCC
Q 020239          109 IGKHEAELALRFNSAAYH-----GDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG---YEDITLFLIQKGVDINIKDK  180 (329)
Q Consensus       109 ~~~~~~~~~~~l~~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~  180 (329)
                      .+..+..+.||||.|+.+     +..+++++|+++|+++|.+|..|.||||+|+..+   +.+++++|+++|++++..|.
T Consensus        64 vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~  143 (489)
T PHA02798         64 VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDK  143 (489)
T ss_pred             CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCC
Confidence            344455666777776653     5567777777777777777777777777777764   56777777777777777777


Q ss_pred             CCCcHHHHHHHcCC---HHHHHHHHHcCCCCCcCC---CCcHHHHHHHc----CCHHHHHHHHHCCC-------------
Q 020239          181 FGNTPLLEAIKCGH---DGVTSLLVKEGASLNVDD---AGSFLCIAVAR----GDSDLLKRVLSNGV-------------  237 (329)
Q Consensus       181 ~g~t~l~~A~~~~~---~~~v~~Ll~~~~~~~~~~---~~~~l~~A~~~----g~~~~v~~Ll~~g~-------------  237 (329)
                      .|.||||+|+..++   .+++++|++.|++++..+   +.||+|.++..    ++.+++++|+++|+             
T Consensus       144 ~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~  223 (489)
T PHA02798        144 DGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKF  223 (489)
T ss_pred             CCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchH
Confidence            77777777777766   677777777777776543   44677766543    35666666666554             


Q ss_pred             --------------------------CCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCC
Q 020239          238 --------------------------DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN  291 (329)
Q Consensus       238 --------------------------~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  291 (329)
                                                |+|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+|||++|+..++
T Consensus       224 ~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~  303 (489)
T PHA02798        224 MEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENES  303 (489)
T ss_pred             HHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCc
Confidence                                      556678889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCc
Q 020239          292 KNLIKLLEDAKCTQL  306 (329)
Q Consensus       292 ~~iv~~L~~~~~~~~  306 (329)
                      .++++.|++++++..
T Consensus       304 ~~iv~~lL~~~~~~~  318 (489)
T PHA02798        304 KFIFNSILNKKPNKN  318 (489)
T ss_pred             HHHHHHHHccCCCHH
Confidence            999999999988653

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=1.1e-32  Score=245.38  Aligned_cols=186  Identities=35%  Similarity=0.490  Sum_probs=127.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccC-CCCCcHHHHHHHcCCH
Q 020239          118 LRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIKCGHD  195 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~  195 (329)
                      ..+..|++.|.++.|+.|++. |.+++..|++|.|+||+|+.+++++++++|+++|+++|..+ .-+.||||+|+++|+.
T Consensus        46 ~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~  125 (600)
T KOG0509|consen   46 DDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHI  125 (600)
T ss_pred             hhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcH
Confidence            456667777777777777766 66666666777777777777777777777777777777665 4466777777777777


Q ss_pred             HHHHHHHHcCCCCCcCCC--CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCcc
Q 020239          196 GVTSLLVKEGASLNVDDA--GSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  273 (329)
Q Consensus       196 ~~v~~Ll~~~~~~~~~~~--~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~  273 (329)
                      .+|++|+++|++++..|.  .+++|+|+..|+.-.+-+|+.+|+|++.+|.+|+||||+|+.+|....+..|++.|+.+.
T Consensus       126 ~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~  205 (600)
T KOG0509|consen  126 SVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLL  205 (600)
T ss_pred             HHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccc
Confidence            777777777777666653  366777777777777777777777777777777777777777776666777777777666


Q ss_pred             CCC-CCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239          274 TKD-RWGNTPLDEGRMCGNKNLIKLLEDAKC  303 (329)
Q Consensus       274 ~~~-~~g~t~l~~A~~~~~~~iv~~L~~~~~  303 (329)
                      .+| +.|.||||+|+..|+..++..|++.|.
T Consensus       206 ~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~  236 (600)
T KOG0509|consen  206 LTDDNHGNTPLHWAVVGGNLTAVKLLLEGGA  236 (600)
T ss_pred             ccccccCCchHHHHHhcCCcceEehhhhcCC
Confidence            665 567777777777777777774444433

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=7.5e-32  Score=244.81  Aligned_cols=285  Identities=22%  Similarity=0.210  Sum_probs=215.6

Q ss_pred             hHHHhHhCchhhhhHhhhhcccccccchhhhchhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhh
Q 020239            5 PAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYF   84 (329)
Q Consensus         5 ~~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (329)
                      ++.|+...+.+.|++|++.|+++.-.-....-.   --. .-.+.....+..+.....       ...+......+.+.+
T Consensus        92 l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~ap---lh~-A~~~~~~s~L~~Ll~~~~-------dvnl~de~~~TpLh~  160 (929)
T KOG0510|consen   92 LHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAP---LHL-AADSGNYSCLKLLLDYGA-------DVNLEDENGFTPLHL  160 (929)
T ss_pred             hHHHhhcchHHHHHHHHhcCCCCChhhhhccCc---hhh-ccccchHHHHHHHHHhcC-------CccccccCCCchhhH
Confidence            567888899999999999999876321000000   000 011111222222222110       111111222223333


Q ss_pred             hhhcccCCchhhhhhhhccccccccCccchhhhHHHHHHHHcCCHHHHHHHHH-----cCCCCCCCCCCCChHHHHHHHc
Q 020239           85 VCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIR-----AGADLNKTDYDGRSPLHLATSR  159 (329)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~-----~~~~~~~~~~~g~t~L~~A~~~  159 (329)
                      ++.   .+..+  .+.+...........+..++.++|.|++.|..++.+.++.     ++..+|..+..+.||||.|+..
T Consensus       161 A~~---~~~~E--~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~  235 (929)
T KOG0510|consen  161 AAR---KNKVE--AKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEG  235 (929)
T ss_pred             HHh---cChHH--HHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhc
Confidence            333   22222  2333333444556677788899999999999999999998     5677899999999999999999


Q ss_pred             CcHHHHHHHHhcCCC---------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHH
Q 020239          160 GYEDITLFLIQKGVD---------------INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVA  222 (329)
Q Consensus       160 g~~~~v~~Ll~~g~~---------------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~  222 (329)
                      |++++++.+++.|..               ++..|.+|.||||+|++.|+.+.++.|+..|++++...  +.||||.|++
T Consensus       236 g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~  315 (929)
T KOG0510|consen  236 GDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAI  315 (929)
T ss_pred             CCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHH
Confidence            999999999998653               34557889999999999999999999999999998765  5699999999


Q ss_pred             cCCHHHHHHHHH-CC-CCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCcc---CCCCCCCcHHHHHHHcCCHHHHHH
Q 020239          223 RGDSDLLKRVLS-NG-VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF---TKDRWGNTPLDEGRMCGNKNLIKL  297 (329)
Q Consensus       223 ~g~~~~v~~Ll~-~g-~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~---~~~~~g~t~l~~A~~~~~~~iv~~  297 (329)
                      +|+.+.|+-|++ .| ...+..|..|+||||.|+.+|+..+++.|+++|+...   ..|..|.||||.|+..|+..+|++
T Consensus       316 yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~  395 (929)
T KOG0510|consen  316 YGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQK  395 (929)
T ss_pred             cccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHH
Confidence            999999999998 43 3568889999999999999999999999999999876   459999999999999999999999


Q ss_pred             HHHcCCCC
Q 020239          298 LEDAKCTQ  305 (329)
Q Consensus       298 L~~~~~~~  305 (329)
                      |+++|++.
T Consensus       396 Li~~Ga~I  403 (929)
T KOG0510|consen  396 LISHGADI  403 (929)
T ss_pred             HHHcCCce
Confidence            99999976

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=3.5e-31  Score=249.23  Aligned_cols=191  Identities=21%  Similarity=0.203  Sum_probs=162.9

Q ss_pred             chhhhHHHHHHHHc--CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCc--HHHHHHHHhcCCCccccCCCCCcHHHH
Q 020239          113 EAELALRFNSAAYH--GDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY--EDITLFLIQKGVDINIKDKFGNTPLLE  188 (329)
Q Consensus       113 ~~~~~~~l~~A~~~--g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~g~t~l~~  188 (329)
                      +..+.||||.|+..  ++.+++++|+++|+++|.+|..|.||||+|+..|+  .+++++|+++|++++.++..|.||||.
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~  253 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMT  253 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            56788999998654  67899999999999999999999999999999995  589999999999999999999999997


Q ss_pred             H-------------------------------------HHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHH--cCCHH
Q 020239          189 A-------------------------------------IKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVA--RGDSD  227 (329)
Q Consensus       189 A-------------------------------------~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~--~g~~~  227 (329)
                      |                                     +..|+.+++++|++.|++++..+  +.||||+|+.  .++.+
T Consensus       254 Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~e  333 (764)
T PHA02716        254 YIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTD  333 (764)
T ss_pred             HHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCch
Confidence            5                                     34467788888999888887654  6689998764  45788


Q ss_pred             HHHHHHHCCCCCCCCCCCCchHHHHHHH--------------hCcHHHHHHHHHCCCCccCCCCCCCcHHHH----HHHc
Q 020239          228 LLKRVLSNGVDPNSRDYDHRTPLHVAAS--------------EGLYLMAKLLLEAGASVFTKDRWGNTPLDE----GRMC  289 (329)
Q Consensus       228 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--------------~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~----A~~~  289 (329)
                      ++++|++.|++++.+|..|+||||+|+.              .++.+++++|+++|++++.+|..|+||||.    |...
T Consensus       334 IVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~  413 (764)
T PHA02716        334 IIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNY  413 (764)
T ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhc
Confidence            9999999999999999999999998865              267899999999999999999999999983    3345


Q ss_pred             CCHHHHHHHHHcCC
Q 020239          290 GNKNLIKLLEDAKC  303 (329)
Q Consensus       290 ~~~~iv~~L~~~~~  303 (329)
                      ++.+++++|++.++
T Consensus       414 ~~~dIvklLis~~~  427 (764)
T PHA02716        414 MYYDIIDCLISDKV  427 (764)
T ss_pred             ChHHHHHHHHhCcc
Confidence            67899999988765

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=1.2e-31  Score=238.81  Aligned_cols=196  Identities=32%  Similarity=0.391  Sum_probs=178.9

Q ss_pred             chhhhhhhhccccccccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCcHHHHHHHHhc
Q 020239           93 ESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYEDITLFLIQK  171 (329)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~  171 (329)
                      +.......++.+ ....+..|.++.++||.|+.+++++++++|+++|+++|... .-+.||||+|+++|+..+|++|+++
T Consensus        56 ~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqh  134 (600)
T KOG0509|consen   56 ELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQH  134 (600)
T ss_pred             hHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHc
Confidence            444444444444 56667778899999999999999999999999999999998 5688999999999999999999999


Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCch
Q 020239          172 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD-YDHRT  248 (329)
Q Consensus       172 g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t  248 (329)
                      |++++.+|..|.+|+|.|+..|+.-++.||+.++++++.+|  ++||||+|+..|+...+..|+..|+.+...| ..|.|
T Consensus       135 GAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~T  214 (600)
T KOG0509|consen  135 GADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNT  214 (600)
T ss_pred             CCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCc
Confidence            99999999999999999999999999999999999998877  6799999999999988999999999999988 89999


Q ss_pred             HHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHc
Q 020239          249 PLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC  289 (329)
Q Consensus       249 ~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~  289 (329)
                      |||.|+..|+..+++.+++-|++.+.+|.+|.||+++|...
T Consensus       215 pLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  215 PLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             hHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            99999999999999977778899999999999999999887

>PHA02795 ankyrin-like protein; Provisional

Probab=99.98  E-value=7.2e-31  Score=232.16  Aligned_cols=185  Identities=19%  Similarity=0.059  Sum_probs=169.6

Q ss_pred             HHHHcCCHHHHHHHHHcCCCCC------CCCCCCChHHHHHHH--cCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 020239          122 SAAYHGDLYQLKGLIRAGADLN------KTDYDGRSPLHLATS--RGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  193 (329)
Q Consensus       122 ~A~~~g~~~~v~~Ll~~~~~~~------~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  193 (329)
                      +|+..+..++++.|+++|++++      .++.+++|+||.++.  .|+.+++++|+++|++++..  .+.||+|.|+..+
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~  160 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKK  160 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcC
Confidence            8999999999999999999988      778889999999999  89999999999999999874  4589999999999


Q ss_pred             CHHHHHHHHHcCCCCCcC--------CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHH
Q 020239          194 HDGVTSLLVKEGASLNVD--------DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  265 (329)
Q Consensus       194 ~~~~v~~Ll~~~~~~~~~--------~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~L  265 (329)
                      +.+++++|+++|++....        .+.+++|.|...++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus       161 ~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelL  240 (437)
T PHA02795        161 ESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWL  240 (437)
T ss_pred             cHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999753322        145788999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCccCCCCCCCcHHHHHHHcCC--------HHHHHHHHHcCCCCccc
Q 020239          266 LEAGASVFTKDRWGNTPLDEGRMCGN--------KNLIKLLEDAKCTQLSE  308 (329)
Q Consensus       266 l~~g~~~~~~~~~g~t~l~~A~~~~~--------~~iv~~L~~~~~~~~~~  308 (329)
                      +++|++++.+|..|+||||+|+..|+        .+++++|+++|++....
T Consensus       241 L~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~  291 (437)
T PHA02795        241 LENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCI  291 (437)
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCch
Confidence            99999999999999999999999984        69999999999865433

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.3e-30  Score=214.49  Aligned_cols=173  Identities=17%  Similarity=0.227  Sum_probs=155.9

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC--cHHHHHHHHhcCCCccccC-CCCCcHHHHHHH
Q 020239          115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG--YEDITLFLIQKGVDINIKD-KFGNTPLLEAIK  191 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~  191 (329)
                      ...+||+.|+..|+.++|+.|++.   ++..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+|+.
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~   96 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLS   96 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHH
Confidence            345899999999999999999975   4667889999999999855  8999999999999999987 479999999876


Q ss_pred             c---CCHHHHHHHHHcCCCCCcCC--CCcHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCchHHHH-HHHhCcHHHHH
Q 020239          192 C---GHDGVTSLLVKEGASLNVDD--AGSFLCIAVA--RGDSDLLKRVLSNGVDPNSRDYDHRTPLHV-AASEGLYLMAK  263 (329)
Q Consensus       192 ~---~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~iv~  263 (329)
                      .   ++.+++++|+++|++++..+  +.||||.|+.  .++.+++++|++.|++++.+|..|.||||. |+..++.++++
T Consensus        97 ~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~  176 (209)
T PHA02859         97 FNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFD  176 (209)
T ss_pred             hCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHH
Confidence            4   47899999999999999865  6699999886  468999999999999999999999999995 56788999999


Q ss_pred             HHHHCCCCccCCCCCCCcHHHHHHHcC
Q 020239          264 LLLEAGASVFTKDRWGNTPLDEGRMCG  290 (329)
Q Consensus       264 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~  290 (329)
                      +|+++|++++.+|..|+||+++|...+
T Consensus       177 ~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        177 FLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            999999999999999999999998764

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=9.1e-32  Score=230.70  Aligned_cols=189  Identities=26%  Similarity=0.392  Sum_probs=172.8

Q ss_pred             hhhhHHHHHHHHcCCHHHHHHHHHc-CCCCCC--------CCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCc
Q 020239          114 AELALRFNSAAYHGDLYQLKGLIRA-GADLNK--------TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT  184 (329)
Q Consensus       114 ~~~~~~l~~A~~~g~~~~v~~Ll~~-~~~~~~--------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t  184 (329)
                      ..+.|||..|+++|+.++|++|+++ ++++..        ....|-+||..|+..||+++||.|+++|+++|....-..|
T Consensus        40 ~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNSt  119 (615)
T KOG0508|consen   40 QNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNST  119 (615)
T ss_pred             cCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCc
Confidence            3455999999999999999999984 566533        3466889999999999999999999999999988888889


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHH
Q 020239          185 PLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMA  262 (329)
Q Consensus       185 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv  262 (329)
                      ||..||.-|+.++++||+++|+|++..+  +.|.||+||..|+.+++++|++.|+|+|.++..|+|+||.|++.|+++++
T Consensus       120 PLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdiv  199 (615)
T KOG0508|consen  120 PLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIV  199 (615)
T ss_pred             cHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHH
Confidence            9999999999999999999999998866  67999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239          263 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  303 (329)
Q Consensus       263 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~  303 (329)
                      ++|+++|+.++. |..|-|||..|+..|+.++|++|++...
T Consensus       200 q~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~~~~  239 (615)
T KOG0508|consen  200 QLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQCET  239 (615)
T ss_pred             HHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhcCCc
Confidence            999999998865 5569999999999999999999997544

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.5e-29  Score=235.36  Aligned_cols=211  Identities=18%  Similarity=0.221  Sum_probs=182.5

Q ss_pred             hhhHHHHHHHHcC------CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHc---CcHHHHHHHHhcCCCc-cccCCCCCc
Q 020239          115 ELALRFNSAAYHG------DLYQLKGLIRAGADLNKTDYDGRSPLHLATSR---GYEDITLFLIQKGVDI-NIKDKFGNT  184 (329)
Q Consensus       115 ~~~~~l~~A~~~g------~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~-~~~~~~g~t  184 (329)
                      .+.||||.|+..+      +.+++++|+++|+++|.++..|.||||.|+..   ++.+++++|+++|+++ +..|..|.|
T Consensus        68 ~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~t  147 (494)
T PHA02989         68 YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYN  147 (494)
T ss_pred             CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCC
Confidence            3479999998764      46899999999999999999999999988765   6799999999999999 789999999


Q ss_pred             HHHHHHHc--CCHHHHHHHHHcCCCCCcC---CCCcHHHHHHHcC----CHHHHHHHHHCCCCCCCCCCCCchHHHHHHH
Q 020239          185 PLLEAIKC--GHDGVTSLLVKEGASLNVD---DAGSFLCIAVARG----DSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS  255 (329)
Q Consensus       185 ~l~~A~~~--~~~~~v~~Ll~~~~~~~~~---~~~~~l~~A~~~g----~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  255 (329)
                      |||+|+..  ++.+++++|+++|++++..   .+.||||.|+..+    +.+++++|+++|++++..+..|.|+||.++.
T Consensus       148 pLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~  227 (494)
T PHA02989        148 LLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLD  227 (494)
T ss_pred             HHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHH
Confidence            99998765  5789999999999998872   4679999988764    8999999999999999999999999998775


Q ss_pred             hC------cHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc--------ccccchhHHHHH
Q 020239          256 EG------LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF--------HYCSQGMIGIAE  321 (329)
Q Consensus       256 ~~------~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~--------~~~~~~~~~~~~  321 (329)
                      .+      ..+++++|++ |++++.+|..|+||||+|+..|+.+++++|+++|++.-...        .++..++.++++
T Consensus       228 ~~~~~~~~~~~il~~l~~-~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~  306 (494)
T PHA02989        228 NNKILSKKEFKVLNFILK-YIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLN  306 (494)
T ss_pred             hchhhcccchHHHHHHHh-CCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHH
Confidence            43      5778887665 79999999999999999999999999999999998754332        234568889999


Q ss_pred             hhhcC
Q 020239          322 NLLLL  326 (329)
Q Consensus       322 ~l~~~  326 (329)
                      .|+..
T Consensus       307 ~LL~~  311 (494)
T PHA02989        307 RILQL  311 (494)
T ss_pred             HHHhc
Confidence            88864

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1e-29  Score=236.05  Aligned_cols=205  Identities=22%  Similarity=0.233  Sum_probs=176.2

Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHc-----CcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcC---
Q 020239          122 SAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSR-----GYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG---  193 (329)
Q Consensus       122 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~---  193 (329)
                      .+...++.+++++|+++|+++|..+..|.||||.|+.+     ++.+++++|+++|+++|..|..|.||||+|+..+   
T Consensus        44 l~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~  123 (489)
T PHA02798         44 LQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYIN  123 (489)
T ss_pred             HhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcC
Confidence            34445689999999999999999999999999999864     6789999999999999999999999999999876   


Q ss_pred             CHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCC---HHHHHHHHHCCCCCCCCC-CCCchHHHHHHHhC----cHHHHH
Q 020239          194 HDGVTSLLVKEGASLNVDD--AGSFLCIAVARGD---SDLLKRVLSNGVDPNSRD-YDHRTPLHVAASEG----LYLMAK  263 (329)
Q Consensus       194 ~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~---~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~----~~~iv~  263 (329)
                      +.+++++|+++|++++..+  +.||||+|+..++   .+++++|++.|++++..+ ..|.||||.++..+    +.++++
T Consensus       124 ~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk  203 (489)
T PHA02798        124 NLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILK  203 (489)
T ss_pred             hHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHH
Confidence            6899999999999998865  6799999999998   999999999999999885 57899999987654    789999


Q ss_pred             HHHHCCCCc---------------------------------------cCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239          264 LLLEAGASV---------------------------------------FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  304 (329)
Q Consensus       264 ~Ll~~g~~~---------------------------------------~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~  304 (329)
                      +|+++|+++                                       +.+|..|+||||+|+..|+.+++++|+++|++
T Consensus       204 ~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAd  283 (489)
T PHA02798        204 LFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGD  283 (489)
T ss_pred             HHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            999887644                                       44677899999999999999999999999997


Q ss_pred             Ccccc--------ccccchhHHHHHhhhcC
Q 020239          305 QLSEF--------HYCSQGMIGIAENLLLL  326 (329)
Q Consensus       305 ~~~~~--------~~~~~~~~~~~~~l~~~  326 (329)
                      .-...        .+...++.++++.|+..
T Consensus       284 in~~d~~G~TpL~~A~~~~~~~iv~~lL~~  313 (489)
T PHA02798        284 INIITELGNTCLFTAFENESKFIFNSILNK  313 (489)
T ss_pred             ccccCCCCCcHHHHHHHcCcHHHHHHHHcc
Confidence            53332        23455677777777653

>PHA02730 ankyrin-like protein; Provisional

Probab=99.97  E-value=7.1e-29  Score=229.56  Aligned_cols=203  Identities=15%  Similarity=0.110  Sum_probs=162.5

Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCChHHHH--HHHcCcHHHHHHHHh-------------------------------
Q 020239          124 AYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL--ATSRGYEDITLFLIQ-------------------------------  170 (329)
Q Consensus       124 ~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~--A~~~g~~~~v~~Ll~-------------------------------  170 (329)
                      ...++.+++++|+++|+++|.+|..|.||||+  |...|+.|++++|++                               
T Consensus       210 ~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (672)
T PHA02730        210 SESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVT  289 (672)
T ss_pred             hhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcc
Confidence            46679999999999999999999999999995  555678999999999                               


Q ss_pred             -cCCCccc--------------------cCCCCCc---------------------HHHHHHHcC---CHHHHHHHHHcC
Q 020239          171 -KGVDINI--------------------KDKFGNT---------------------PLLEAIKCG---HDGVTSLLVKEG  205 (329)
Q Consensus       171 -~g~~~~~--------------------~~~~g~t---------------------~l~~A~~~~---~~~~v~~Ll~~~  205 (329)
                       +|++...                    .+..|.+                     .|+.-...+   +.+++++|+++|
T Consensus       290 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~G  369 (672)
T PHA02730        290 PYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNG  369 (672)
T ss_pred             cCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCC
Confidence             6777654                    3344433                     556555655   589999999999


Q ss_pred             CCCCcCC-CCcHHHHHHHcCC----HHHHHHHHHCCC--CCCCCCCCCchHHHH---HHHhC---------cHHHHHHHH
Q 020239          206 ASLNVDD-AGSFLCIAVARGD----SDLLKRVLSNGV--DPNSRDYDHRTPLHV---AASEG---------LYLMAKLLL  266 (329)
Q Consensus       206 ~~~~~~~-~~~~l~~A~~~g~----~~~v~~Ll~~g~--~~~~~~~~g~t~L~~---A~~~~---------~~~iv~~Ll  266 (329)
                      ++++... +.||||+|+..++    .+++++|+++|+  +++.+|..|.||||.   |...+         ..+++++|+
T Consensus       370 AdIN~k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LI  449 (672)
T PHA02730        370 ATMDKTTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILS  449 (672)
T ss_pred             CCCCcCCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHH
Confidence            9988753 5699999988875    899999999987  689999999999984   33222         236799999


Q ss_pred             HCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccc-----------cchhHHHHHhhhcC
Q 020239          267 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYC-----------SQGMIGIAENLLLL  326 (329)
Q Consensus       267 ~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~  326 (329)
                      ++|++++.+|..|+||||+|+..++.+++++|+++|++.-.....+           ..++.++++.|++-
T Consensus       450 s~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~  520 (672)
T PHA02730        450 KYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSY  520 (672)
T ss_pred             hcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHc
Confidence            9999999999999999999999999999999999999653332211           12466788888753

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=2.1e-29  Score=228.95  Aligned_cols=189  Identities=32%  Similarity=0.398  Sum_probs=121.7

Q ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q 020239          112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  191 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  191 (329)
                      .+....+|+|+|+..|+.++++.|++.|+|+|..|..|.||||.||..++.|..+.|+++|+++...|.+|.+|+|.|++
T Consensus       117 ~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~  196 (929)
T KOG0510|consen  117 RNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAAR  196 (929)
T ss_pred             hhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHH
Confidence            34445566777777777777777777777777666667777777777777676666666777766666666666666666


Q ss_pred             cCCHHHHHHHHH-----c--CCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCC---------------CCCCCCCCchH
Q 020239          192 CGHDGVTSLLVK-----E--GASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVD---------------PNSRDYDHRTP  249 (329)
Q Consensus       192 ~~~~~~v~~Ll~-----~--~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~---------------~~~~~~~g~t~  249 (329)
                      .|..++.+..+.     .  +.+....++.+|||.|+..|+.++++..++.|..               ++..|.+|.||
T Consensus       197 s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tp  276 (929)
T KOG0510|consen  197 SGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTP  276 (929)
T ss_pred             hcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCch
Confidence            666666666665     2  2233334455666666666666666666665432               13346666666


Q ss_pred             HHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 020239          250 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  300 (329)
Q Consensus       250 L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~  300 (329)
                      ||+|++.|+.+.++.|+..|++++.++.++.||||.|+.+|+.+.|+-|++
T Consensus       277 LH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~  327 (929)
T KOG0510|consen  277 LHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQ  327 (929)
T ss_pred             HHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHh
Confidence            666666666666666666666666666666666666666666666666666

>PHA02917 ankyrin-like protein; Provisional

Probab=99.97  E-value=7.3e-29  Score=234.58  Aligned_cols=191  Identities=18%  Similarity=0.117  Sum_probs=162.3

Q ss_pred             CccchhhhHHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHH----HHHHHHhcCCCccccCCCC
Q 020239          110 GKHEAELALRFNSAAYH---GDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYED----ITLFLIQKGVDINIKDKFG  182 (329)
Q Consensus       110 ~~~~~~~~~~l~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g  182 (329)
                      ...+..+.||||+|+..   |+.+++++|++.|++++..+..|.||||+|+..|+.+    +++.|++.+...+..+  .
T Consensus        26 ~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~--~  103 (661)
T PHA02917         26 DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND--F  103 (661)
T ss_pred             cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC--c
Confidence            34466778999997555   8899999999999999999999999999999999854    5678887654445443  2


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHH--HcCCHHHHHHHHHCCCCCCCCCC---CC---------
Q 020239          183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAV--ARGDSDLLKRVLSNGVDPNSRDY---DH---------  246 (329)
Q Consensus       183 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~--~~g~~~~v~~Ll~~g~~~~~~~~---~g---------  246 (329)
                      .+++++|+..++.+++++|+++|++++..+  +.||||.++  ..|+.+++++|+++|++++..|.   .|         
T Consensus       104 ~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        104 NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPR  183 (661)
T ss_pred             chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccc
Confidence            367788999999999999999999999854  679999654  57899999999999999986553   34         


Q ss_pred             --chHHHHHHH-----------hCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCH--HHHHHHHHcCC
Q 020239          247 --RTPLHVAAS-----------EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK--NLIKLLEDAKC  303 (329)
Q Consensus       247 --~t~L~~A~~-----------~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~--~iv~~L~~~~~  303 (329)
                        .||||+|+.           .++.+++++|+++|++++.+|..|.||||+|+..|+.  ++|++|++ |+
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~  254 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GI  254 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CC
Confidence              599999986           4589999999999999999999999999999999985  79999986 54

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=5.5e-30  Score=219.81  Aligned_cols=206  Identities=28%  Similarity=0.352  Sum_probs=178.2

Q ss_pred             HHHHHcCCHHHHHHHHHcCCCC-----CCCCCCCChHHHHHHHcCcHHHHHHHHhc-CCCcccc--------CCCCCcHH
Q 020239          121 NSAAYHGDLYQLKGLIRAGADL-----NKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIK--------DKFGNTPL  186 (329)
Q Consensus       121 ~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~--------~~~g~t~l  186 (329)
                      ..|++.|++..++.|+-+..+.     -.....|.|||-.|+++||.++|++|+++ ++++...        ...|.+||
T Consensus         9 ~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappL   88 (615)
T KOG0508|consen    9 INAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPL   88 (615)
T ss_pred             HHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchh
Confidence            3788888888888887653321     12345688999999999999999999994 6655432        35689999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHH
Q 020239          187 LEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKL  264 (329)
Q Consensus       187 ~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~  264 (329)
                      ..|+..|++++|+.|+++|+++|...  +.|||-.||..|+.+++++|+++|+|++..|+.|.|.||+|+.+|+.+|+++
T Consensus        89 WaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qy  168 (615)
T KOG0508|consen   89 WAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQY  168 (615)
T ss_pred             hHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHH
Confidence            99999999999999999999999754  4599999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-------cccccchhHHHHHhhhcC
Q 020239          265 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE-------FHYCSQGMIGIAENLLLL  326 (329)
Q Consensus       265 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~  326 (329)
                      |++.|+|+|.++..|+|+||.|++.|+.|++++|+++|+.....       ..+...|+.++|++|+.-
T Consensus       169 Lle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  169 LLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             HHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhcC
Confidence            99999999999999999999999999999999999998853322       334567999999999863

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=5e-29  Score=239.15  Aligned_cols=194  Identities=34%  Similarity=0.416  Sum_probs=184.9

Q ss_pred             cchhhhHHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239          112 HEAELALRFNSAAYHG-DLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  190 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  190 (329)
                      .+..+.|++|.|+..| ..++...+++.|.++|.....|.||||.|++.|+.++++.|++.++..+...+.+.+++|.|.
T Consensus       436 ~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~  515 (1143)
T KOG4177|consen  436 KAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAA  515 (1143)
T ss_pred             HhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhh
Confidence            4445579999999999 888999999999999999999999999999999999999999999888888899999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCcCCCC--cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHC
Q 020239          191 KCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA  268 (329)
Q Consensus       191 ~~~~~~~v~~Ll~~~~~~~~~~~~--~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~  268 (329)
                      ..+...+++.++++|++.+.++++  ||||.|+.+|+.++|++|+++|+|++.++..|+||||.|+..|+.+|+.+|+++
T Consensus       516 ~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~  595 (1143)
T KOG4177|consen  516 DEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKH  595 (1143)
T ss_pred             hhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHc
Confidence            999999999999999999987754  999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239          269 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  305 (329)
Q Consensus       269 g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~  305 (329)
                      |+++|..|.+|.|||++|+..|+.++++.|+..+.++
T Consensus       596 GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  596 GASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             CCCCCcccccCcchhHHHHHhcccchhhHHHhccCcc
Confidence            9999999999999999999999999999999999874

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.4e-27  Score=221.09  Aligned_cols=202  Identities=20%  Similarity=0.145  Sum_probs=167.3

Q ss_pred             ccccccCccchhhhHHHHH--HHHcCCHHHHHHHHH--------------------------------cCCCCCC-----
Q 020239          104 DITFHIGKHEAELALRFNS--AAYHGDLYQLKGLIR--------------------------------AGADLNK-----  144 (329)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~--A~~~g~~~~v~~Ll~--------------------------------~~~~~~~-----  144 (329)
                      .....++..+..+.||||+  |...|+.|++++|++                                .|+|...     
T Consensus       223 s~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  302 (672)
T PHA02730        223 DNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLI  302 (672)
T ss_pred             HCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHh
Confidence            3345667778889999995  555577999999999                                6777644     


Q ss_pred             ---------------CCCCCCh---------------------HHHHHHHcC---cHHHHHHHHhcCCCccccCCCCCcH
Q 020239          145 ---------------TDYDGRS---------------------PLHLATSRG---YEDITLFLIQKGVDINIKDKFGNTP  185 (329)
Q Consensus       145 ---------------~~~~g~t---------------------~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~  185 (329)
                                     .+..|.+                     .||.-...+   +.+++++|+++|++++.. ..|.||
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~Tp  381 (672)
T PHA02730        303 EGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYP  381 (672)
T ss_pred             hccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcH
Confidence                           4455544                     677777755   689999999999999985 789999


Q ss_pred             HHHHHHcCC----HHHHHHHHHcCC--CCCcCC--CCcHHHH---HHHcC---------CHHHHHHHHHCCCCCCCCCCC
Q 020239          186 LLEAIKCGH----DGVTSLLVKEGA--SLNVDD--AGSFLCI---AVARG---------DSDLLKRVLSNGVDPNSRDYD  245 (329)
Q Consensus       186 l~~A~~~~~----~~~v~~Ll~~~~--~~~~~~--~~~~l~~---A~~~g---------~~~~v~~Ll~~g~~~~~~~~~  245 (329)
                      ||+|+..++    .+++++|+++|+  +++..+  +.||||.   |...+         ..+++++|+.+|++++.+|..
T Consensus       382 LH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~  461 (672)
T PHA02730        382 LHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNE  461 (672)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCC
Confidence            999998875    799999999987  466544  6799984   33232         235799999999999999999


Q ss_pred             CchHHHHHHHhCcHHHHHHHHHCCCCccCCCC-CCCcHHHHHHHc--CCHHHHHHHHHcCCCCc
Q 020239          246 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDR-WGNTPLDEGRMC--GNKNLIKLLEDAKCTQL  306 (329)
Q Consensus       246 g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~-~g~t~l~~A~~~--~~~~iv~~L~~~~~~~~  306 (329)
                      |.||||+|+..++.+++++|+++|++++.++. .|.||+|+|+..  ++.+++++|+++|++..
T Consensus       462 G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        462 NKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999997 599999999974  78999999999999653

>PHA02792 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.4e-27  Score=218.88  Aligned_cols=289  Identities=12%  Similarity=0.025  Sum_probs=171.1

Q ss_pred             CchHHHhHhCchhhhhHhhhhcccccccchhhhchhhhhhhcc-cccccHHHHHHHHHHhhhcccCchhHHHhcCCccch
Q 020239            3 PGPAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSL-FKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQ   81 (329)
Q Consensus         3 ~~~~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~l-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (329)
                      |-.-+|+..|+.|+|++|+..|++.++...... .   -..+. -.....+.+..++..+....-     ....|-.+ .
T Consensus        74 ~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~-~---~l~ya~~~~~~~eivk~Ll~~Gad~~~-----~~~~g~~~-~  143 (631)
T PHA02792         74 IFEYLCSDNIDIELLKLLISKGLEINSIKNGIN-I---VEKYATTSNPNVDVFKLLLDKGIPTCS-----NIQYGYKI-I  143 (631)
T ss_pred             HHHHHHHhcccHHHHHHHHHcCCCcccccCCCC-c---ceeEeecCCCChHHHHHHHHCCCCccc-----ccccCcch-h
Confidence            445689999999999999999999986633211 1   00111 123456666666665432000     00000000 0


Q ss_pred             hhhhhhcccCCchhhhhhhhccccccccCccchhhhHHHHHHHHcC-------CHHHHHHHHHcCCCCCCCCCCCChHHH
Q 020239           82 LYFVCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHG-------DLYQLKGLIRAGADLNKTDYDGRSPLH  154 (329)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~g~t~L~  154 (329)
                      ..-+.++.+   .......-..+.....+..+..+.||||+|+..+       +.++++.|+++|++++..|..|.||||
T Consensus       144 ~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~  220 (631)
T PHA02792        144 IEQITRAEY---YNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLY  220 (631)
T ss_pred             hhhcccccc---cchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHH
Confidence            000111111   1111122222334444456667899999999999       899999999999999999999999999


Q ss_pred             HHHHcC--cHHHHHHHHhcCCCc-cc------------------cC----------------------------------
Q 020239          155 LATSRG--YEDITLFLIQKGVDI-NI------------------KD----------------------------------  179 (329)
Q Consensus       155 ~A~~~g--~~~~v~~Ll~~g~~~-~~------------------~~----------------------------------  179 (329)
                      +|+...  ..|++++|++.--+. ..                  .|                                  
T Consensus       221 ~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~  300 (631)
T PHA02792        221 YYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILK  300 (631)
T ss_pred             HHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHH
Confidence            999998  778888887631100 00                  00                                  


Q ss_pred             ------------------------------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC----CcHHHH
Q 020239          180 ------------------------------------KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA----GSFLCI  219 (329)
Q Consensus       180 ------------------------------------~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~----~~~l~~  219 (329)
                                                          ..+..+++.|+..|+.+++++|+++|++++..+.    .||||.
T Consensus       301 ~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~  380 (631)
T PHA02792        301 RYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFP  380 (631)
T ss_pred             HHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHH
Confidence                                                0133445556666666666666666666655442    255665


Q ss_pred             HHHcCCH---HHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHH--c-----
Q 020239          220 AVARGDS---DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM--C-----  289 (329)
Q Consensus       220 A~~~g~~---~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~--~-----  289 (329)
                      |+.....   +++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++++.+|..|.||+++|+.  .     
T Consensus       381 A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~  460 (631)
T PHA02792        381 TLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPE  460 (631)
T ss_pred             HHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHH
Confidence            5554443   23555566666666666666666666666666666666666666666666666666666654  1     


Q ss_pred             ---CCHHHHHHHHHcCCC
Q 020239          290 ---GNKNLIKLLEDAKCT  304 (329)
Q Consensus       290 ---~~~~iv~~L~~~~~~  304 (329)
                         ...++++.|++++++
T Consensus       461 i~~~~~~il~lLLs~~p~  478 (631)
T PHA02792        461 IAELYIKILEIILSKLPT  478 (631)
T ss_pred             HHHHHHHHHHHHHhcCCC
Confidence               123456666666554

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=1e-28  Score=237.00  Aligned_cols=213  Identities=30%  Similarity=0.388  Sum_probs=142.8

Q ss_pred             chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCc-----------------
Q 020239          113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI-----------------  175 (329)
Q Consensus       113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----------------  175 (329)
                      +..+.++++.|+..|..++++.++.+|.+++.....|.||||.|+..++..+++.++++|+++                 
T Consensus       371 ~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~  450 (1143)
T KOG4177|consen  371 EEKGFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKK  450 (1143)
T ss_pred             cccCCcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhc
Confidence            334445555555555555555555555555555555555555555555555555555444444                 


Q ss_pred             -----------------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC--CCCcHHHHHHHcCCHHHHHHHHHCC
Q 020239          176 -----------------NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD--DAGSFLCIAVARGDSDLLKRVLSNG  236 (329)
Q Consensus       176 -----------------~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~~~l~~A~~~g~~~~v~~Ll~~g  236 (329)
                                       +.....|.||||.|+..|+.+++..+++.++..+..  .+-+++|.+...+...+++.+++.|
T Consensus       451 g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~g  530 (1143)
T KOG4177|consen  451 GRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHG  530 (1143)
T ss_pred             ccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcC
Confidence                             444444555555555555555555555544322222  2335566666666666666677777


Q ss_pred             CCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccc------
Q 020239          237 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH------  310 (329)
Q Consensus       237 ~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~~------  310 (329)
                      ++++.++..|+||||.|+..|+.++|++|+++|++++.+++.|+||||.|+..|+.+++++|.++|++.-....      
T Consensus       531 a~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL  610 (1143)
T KOG4177|consen  531 ANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPL  610 (1143)
T ss_pred             CceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchh
Confidence            88888999999999999999999999999999999999999999999999999999999999999997544322      


Q ss_pred             --cccchhHHHHHhhhc
Q 020239          311 --YCSQGMIGIAENLLL  325 (329)
Q Consensus       311 --~~~~~~~~~~~~l~~  325 (329)
                        +.+.|++++++.|+.
T Consensus       611 ~iA~~lg~~~~~k~l~~  627 (1143)
T KOG4177|consen  611 HIAVRLGYLSVVKLLKV  627 (1143)
T ss_pred             HHHHHhcccchhhHHHh
Confidence              234466777776654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=7e-27  Score=192.43  Aligned_cols=171  Identities=18%  Similarity=0.206  Sum_probs=148.9

Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCcCC---CCcHHHHHH
Q 020239          147 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG--HDGVTSLLVKEGASLNVDD---AGSFLCIAV  221 (329)
Q Consensus       147 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~--~~~~v~~Ll~~~~~~~~~~---~~~~l~~A~  221 (329)
                      ..+.||||.|+..|+.++|+.|++.   ++..+..|.||||+|+..+  +.+++++|+++|++++..+   +.||||+|+
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            4568999999999999999999976   4667888999999999854  8999999999999999763   569999987


Q ss_pred             Hc---CCHHHHHHHHHCCCCCCCCCCCCchHHHHHHH--hCcHHHHHHHHHCCCCccCCCCCCCcHHHH-HHHcCCHHHH
Q 020239          222 AR---GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS--EGLYLMAKLLLEAGASVFTKDRWGNTPLDE-GRMCGNKNLI  295 (329)
Q Consensus       222 ~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~-A~~~~~~~iv  295 (329)
                      ..   ++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|+++|++++.+|..|.||||. |+..++.+++
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv  175 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIF  175 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHH
Confidence            64   47999999999999999999999999999886  468999999999999999999999999995 5678899999


Q ss_pred             HHHHHcCCCCccccccccchhHHHHH
Q 020239          296 KLLEDAKCTQLSEFHYCSQGMIGIAE  321 (329)
Q Consensus       296 ~~L~~~~~~~~~~~~~~~~~~~~~~~  321 (329)
                      ++|+++|+..-.. ...+.+.++++.
T Consensus       176 ~~Ll~~Gadi~~~-d~~g~tpl~la~  200 (209)
T PHA02859        176 DFLTSLGIDINET-NKSGYNCYDLIK  200 (209)
T ss_pred             HHHHHcCCCCCCC-CCCCCCHHHHHh
Confidence            9999999865443 345567777665

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=6.9e-27  Score=221.21  Aligned_cols=197  Identities=21%  Similarity=0.250  Sum_probs=165.4

Q ss_pred             HHHHHHHHHcCCCCCCCCCCCChHHHHHHHc---CcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH----HHHHHH
Q 020239          129 LYQLKGLIRAGADLNKTDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD----GVTSLL  201 (329)
Q Consensus       129 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~----~~v~~L  201 (329)
                      ++.+|+|+..|..++.+|.+|.||||+|+..   |+.+++++|++.|++++..+..|.||||+|+..|+.    ++++.|
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~L   91 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMAL   91 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHH
Confidence            5678999998888888899999999998665   789999999999999999999999999999999985    456788


Q ss_pred             HHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHH--HhCcHHHHHHHHHCCCCccCCCC--
Q 020239          202 VKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA--SEGLYLMAKLLLEAGASVFTKDR--  277 (329)
Q Consensus       202 l~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~--~~~~~~iv~~Ll~~g~~~~~~~~--  277 (329)
                      ++.+...+..+..++++.|+..|+.+++++|+++|++++.+|.+|+||||.|+  ..|+.+++++|+++|++++.+|.  
T Consensus        92 l~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~  171 (661)
T PHA02917         92 LEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDD  171 (661)
T ss_pred             HhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccc
Confidence            87755456556667788899999999999999999999999999999999654  46899999999999999986653  


Q ss_pred             -CC-----------CcHHHHHHH-----------cCCHHHHHHHHHcCCCCcccc-------c-cccchh--HHHHHhhh
Q 020239          278 -WG-----------NTPLDEGRM-----------CGNKNLIKLLEDAKCTQLSEF-------H-YCSQGM--IGIAENLL  324 (329)
Q Consensus       278 -~g-----------~t~l~~A~~-----------~~~~~iv~~L~~~~~~~~~~~-------~-~~~~~~--~~~~~~l~  324 (329)
                       .|           .||||+|+.           .++.++|++|+++|+..-...       + ++..++  .++++.|+
T Consensus       172 ~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li  251 (661)
T PHA02917        172 EYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLM  251 (661)
T ss_pred             ccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHH
Confidence             23           599999986           568999999999998654321       1 234455  47999986


Q ss_pred             c
Q 020239          325 L  325 (329)
Q Consensus       325 ~  325 (329)
                      .
T Consensus       252 ~  252 (661)
T PHA02917        252 K  252 (661)
T ss_pred             h
Confidence            4

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.95  E-value=1.2e-27  Score=186.32  Aligned_cols=189  Identities=26%  Similarity=0.314  Sum_probs=176.1

Q ss_pred             ccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239          111 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  190 (329)
Q Consensus       111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  190 (329)
                      .++.++..+++.|+-+++...+..++.+|...|..+-.+.+|+.+++...+++++..+.++  .+|..|+.|.|||++|+
T Consensus        91 ~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAa  168 (296)
T KOG0502|consen   91 ETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAA  168 (296)
T ss_pred             CCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHH
Confidence            3555688999999999999999999999999999999999999999999999999888877  68899999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHC
Q 020239          191 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA  268 (329)
Q Consensus       191 ~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~  268 (329)
                      +.|++++|++|++.|++++.-.  ..++|++|++.|..++|+.|++.+.|+|..|.+|-|||-||++.|+.+|++.|+..
T Consensus       169 a~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~s  248 (296)
T KOG0502|consen  169 AKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNS  248 (296)
T ss_pred             hcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhc
Confidence            9999999999999999998765  45899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020239          269 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK  302 (329)
Q Consensus       269 g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~  302 (329)
                      |++++..+..|.++++.|+..|+. +|+..+++-
T Consensus       249 GAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h  281 (296)
T KOG0502|consen  249 GADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKH  281 (296)
T ss_pred             CCCcccccccCCcHHHHHHHhhhH-HHHHHHHHH
Confidence            999999999999999999999999 777766653

>PHA02795 ankyrin-like protein; Provisional

Probab=99.94  E-value=7.8e-26  Score=200.28  Aligned_cols=191  Identities=15%  Similarity=0.091  Sum_probs=167.2

Q ss_pred             HHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCcc------ccCCCCCcHHHHHHH--cCCHHHHHHHH
Q 020239          131 QLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN------IKDKFGNTPLLEAIK--CGHDGVTSLLV  202 (329)
Q Consensus       131 ~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~t~l~~A~~--~~~~~~v~~Ll  202 (329)
                      ..++++.+|+++|..+.+|     +|+..+..+++++|+++|++++      ..+..++|+||+++.  .|+.+++++|+
T Consensus        64 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI  138 (437)
T PHA02795         64 LYDYFRIHRDNIDQYIVDR-----LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMV  138 (437)
T ss_pred             HHHHHHHcCcchhhhhhhh-----HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHH
Confidence            3588999999999887777     8999999999999999999988      677889999999999  89999999999


Q ss_pred             HcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC------CCCchHHHHHHHhCcHHHHHHHHHCCCCccCCC
Q 020239          203 KEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD------YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD  276 (329)
Q Consensus       203 ~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~------~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~  276 (329)
                      ++|++++..++.||+|.|+..++.+++++|+++|++.....      ..+.|++|.|...++.+++++|+++|++++.+|
T Consensus       139 ~~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD  218 (437)
T PHA02795        139 DHGAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLD  218 (437)
T ss_pred             HCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCC
Confidence            99999999888999999999999999999999998543222      347789999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccc--------cccc--------hhHHHHHhhhcC
Q 020239          277 RWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH--------YCSQ--------GMIGIAENLLLL  326 (329)
Q Consensus       277 ~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~~--------~~~~--------~~~~~~~~l~~~  326 (329)
                      ..|.||||+|+..|+.+++++|+++|+..-....        ++..        ++.++++.|+.-
T Consensus       219 ~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~  284 (437)
T PHA02795        219 AGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLRE  284 (437)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhC
Confidence            9999999999999999999999999986533321        1222        367899988754

>PHA02792 ankyrin-like protein; Provisional

Probab=99.94  E-value=3.7e-25  Score=202.92  Aligned_cols=199  Identities=16%  Similarity=0.061  Sum_probs=164.7

Q ss_pred             ccCccchhhhHHHHHHHH-cCCHHHHHHHHHcCCCCC------------------------------------CCCCCCC
Q 020239          108 HIGKHEAELALRFNSAAY-HGDLYQLKGLIRAGADLN------------------------------------KTDYDGR  150 (329)
Q Consensus       108 ~~~~~~~~~~~~l~~A~~-~g~~~~v~~Ll~~~~~~~------------------------------------~~~~~g~  150 (329)
                      ..+..+..+.+++++|+. .++.|++++|+++|++++                                    ..+..|.
T Consensus        97 dvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~  176 (631)
T PHA02792         97 EINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGK  176 (631)
T ss_pred             CcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCC
Confidence            344445557789999965 699999999999998732                                    2345699


Q ss_pred             hHHHHHHHcC-------cHHHHHHHHhcCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHHcCC---------------
Q 020239          151 SPLHLATSRG-------YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG--HDGVTSLLVKEGA---------------  206 (329)
Q Consensus       151 t~L~~A~~~g-------~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~--~~~~v~~Ll~~~~---------------  206 (329)
                      ||||+|+.++       +.++++.|+++|++++..|..|.||||+|+...  +.|++++|++..-               
T Consensus       177 t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~  256 (631)
T PHA02792        177 TVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRK  256 (631)
T ss_pred             chHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHH
Confidence            9999999999       899999999999999999999999999999888  6777777765311               


Q ss_pred             ----------------------------------------------------------------------------CCCc
Q 020239          207 ----------------------------------------------------------------------------SLNV  210 (329)
Q Consensus       207 ----------------------------------------------------------------------------~~~~  210 (329)
                                                                                                  +...
T Consensus       257 ~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r  336 (631)
T PHA02792        257 QYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLYR  336 (631)
T ss_pred             HhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcccc
Confidence                                                                                        1110


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC--chHHHHHHHhCcH---HHHHHHHHCCCCccCCCCCCCcHHHH
Q 020239          211 DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDH--RTPLHVAASEGLY---LMAKLLLEAGASVFTKDRWGNTPLDE  285 (329)
Q Consensus       211 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~---~iv~~Ll~~g~~~~~~~~~g~t~l~~  285 (329)
                      ......++.|+..|+.+++++|+++|++++.+|.+|  .||||+|+.....   +++++|+++|++++.+|..|+||||+
T Consensus       337 ~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~  416 (631)
T PHA02792        337 FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYY  416 (631)
T ss_pred             CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHH
Confidence            112234777899999999999999999999998775  6999998776654   46899999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCc
Q 020239          286 GRMCGNKNLIKLLEDAKCTQL  306 (329)
Q Consensus       286 A~~~~~~~iv~~L~~~~~~~~  306 (329)
                      |+..++.+++++|+++|+..-
T Consensus       417 Aa~~~n~eivelLLs~GADIN  437 (631)
T PHA02792        417 CIESHSVSLVEWLIDNGADIN  437 (631)
T ss_pred             HHHcCCHHHHHHHHHCCCCCC
Confidence            999999999999999998643

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=9.4e-25  Score=213.85  Aligned_cols=175  Identities=20%  Similarity=0.174  Sum_probs=156.2

Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHc
Q 020239          146 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVAR  223 (329)
Q Consensus       146 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~  223 (329)
                      +..+.++|+.||..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..+  +.||||.|+..
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA  601 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh
Confidence            3456789999999999999999999999999999999999999999999999999999999998765  67999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239          224 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  303 (329)
Q Consensus       224 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~  303 (329)
                      |+.+++++|++.+...+.  ..|.++||.|+..|+.++++.|+++|++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       602 g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GA  679 (823)
T PLN03192        602 KHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGA  679 (823)
T ss_pred             CCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence            999999999988766543  457799999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccchhHHHHHh
Q 020239          304 TQLSEFHYCSQGMIGIAEN  322 (329)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~  322 (329)
                      +..........+..++++.
T Consensus       680 dv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        680 DVDKANTDDDFSPTELREL  698 (823)
T ss_pred             CCCCCCCCCCCCHHHHHHH
Confidence            7765544443445555443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=2e-24  Score=210.31  Aligned_cols=193  Identities=21%  Similarity=0.134  Sum_probs=156.0

Q ss_pred             ccccCccchhhhHHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcC---cHHHHHHHHhcCCC------c
Q 020239          106 TFHIGKHEAELALRFN-SAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG---YEDITLFLIQKGVD------I  175 (329)
Q Consensus       106 ~~~~~~~~~~~~~~l~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~g~~------~  175 (329)
                      ....+..+..+.|||| .|+..++.++++.|++.|.    .+..|.||||.|+..+   ...+++.+...+.+      .
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~  117 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELA  117 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhh
Confidence            3344456677889999 8999999999999999876    5678999999998732   23344555544322      1


Q ss_pred             c----ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC----------------CCCcHHHHHHHcCCHHHHHHHHHC
Q 020239          176 N----IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD----------------DAGSFLCIAVARGDSDLLKRVLSN  235 (329)
Q Consensus       176 ~----~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~----------------~~~~~l~~A~~~g~~~~v~~Ll~~  235 (329)
                      +    ..+..|.||||+|+..|+.+++++|+++|++++..                .+.+|||.|+..|+.+++++|++.
T Consensus       118 ~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~  197 (743)
T TIGR00870       118 NDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED  197 (743)
T ss_pred             ccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC
Confidence            1    12346999999999999999999999999998854                256899999999999999999999


Q ss_pred             CCCCCCCCCCCchHHHHHHHhC---------cHHHHHHHHHCCCCc-------cCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 020239          236 GVDPNSRDYDHRTPLHVAASEG---------LYLMAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKLLE  299 (329)
Q Consensus       236 g~~~~~~~~~g~t~L~~A~~~~---------~~~iv~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~iv~~L~  299 (329)
                      |+|++.+|..|+||||+|+..+         ...+.+.+++.++..       +..|..|.|||++|+..|+.+++++|+
T Consensus       198 gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL  277 (743)
T TIGR00870       198 PADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKL  277 (743)
T ss_pred             CcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHH
Confidence            9999999999999999999987         234667777665544       667899999999999999999999999


Q ss_pred             HcC
Q 020239          300 DAK  302 (329)
Q Consensus       300 ~~~  302 (329)
                      +.+
T Consensus       278 ~~~  280 (743)
T TIGR00870       278 AIK  280 (743)
T ss_pred             HHH
Confidence            954

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=2.7e-24  Score=209.41  Aligned_cols=207  Identities=23%  Similarity=0.210  Sum_probs=167.8

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCChHHH-HHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q 020239          115 ELALRFNSAAYHGDLYQLKGLIRA--GADLNKTDYDGRSPLH-LATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  191 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  191 (329)
                      .....|+.|+..|+.+.++.+++.  +.++|..|..|.|||| .|+.+++.+++++|+++|.    .+..|.||||.|+.
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISL   91 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHh
Confidence            456889999999999999999998  8999999999999999 8889999999999999987    56789999999987


Q ss_pred             cC---CHHHHHHHHHcCCC------CC------cCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-------------
Q 020239          192 CG---HDGVTSLLVKEGAS------LN------VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD-------------  243 (329)
Q Consensus       192 ~~---~~~~v~~Ll~~~~~------~~------~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-------------  243 (329)
                      .+   ...++.++.+.+.+      .+      ...+.||||+|+.+|+.++++.|+++|++++.++             
T Consensus        92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~  171 (743)
T TIGR00870        92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDS  171 (743)
T ss_pred             ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCc
Confidence            22   22344444444322      11      1347799999999999999999999999998653             


Q ss_pred             -CCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcC---------CHHHHHHHHHcCCCC--------
Q 020239          244 -YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG---------NKNLIKLLEDAKCTQ--------  305 (329)
Q Consensus       244 -~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~---------~~~iv~~L~~~~~~~--------  305 (329)
                       ..|.||||.|+..|+.+++++|+++|+|++.+|..|+||||+|+..+         ...+.+++++.++..        
T Consensus       172 ~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~  251 (743)
T TIGR00870       172 FYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEV  251 (743)
T ss_pred             ccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhh
Confidence             35899999999999999999999999999999999999999999987         234556666553321        


Q ss_pred             ------ccc-cccccchhHHHHHhhhc
Q 020239          306 ------LSE-FHYCSQGMIGIAENLLL  325 (329)
Q Consensus       306 ------~~~-~~~~~~~~~~~~~~l~~  325 (329)
                            ..+ ..++..|+.++++.|+.
T Consensus       252 i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       252 ILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             hcCCCCCCchhhhhhcCCccHHHHHHH
Confidence                  111 23456788899998876

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=9.9e-25  Score=182.04  Aligned_cols=159  Identities=30%  Similarity=0.423  Sum_probs=144.0

Q ss_pred             CCCCCCCCChHHHHHHHcCcHHHHHHHHhcC-CCccccCCCCCcHHHHHHHc-----CCHHHHHHHHHcCCCCCcC---C
Q 020239          142 LNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNTPLLEAIKC-----GHDGVTSLLVKEGASLNVD---D  212 (329)
Q Consensus       142 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~-----~~~~~v~~Ll~~~~~~~~~---~  212 (329)
                      +|..|.+|+|+||||+..+++++|+.|++.| |+++.+|+.|.||+++++..     .+.++|..|...| ++|..   .
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            5678999999999999999999999999986 89999999999999998754     3467888888774 45543   4


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHH-CCCCccCCCCCCCcHHHHHHHcCC
Q 020239          213 AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGN  291 (329)
Q Consensus       213 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~  291 (329)
                      +.|+|++|+.+|+.++|+.|+.+|+|+|.+|.+|.|+|++|++.|+.+|++.||. .++|+...|..|.|+|.+|-..|+
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            7799999999999999999999999999999999999999999999999999998 579999999999999999999999


Q ss_pred             HHHHHHHHHc
Q 020239          292 KNLIKLLEDA  301 (329)
Q Consensus       292 ~~iv~~L~~~  301 (329)
                      .||.-+|-.+
T Consensus       420 ~eIa~mlYa~  429 (452)
T KOG0514|consen  420 REIAVMLYAH  429 (452)
T ss_pred             hHHHHHHHHH
Confidence            9999888554

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=2.6e-24  Score=188.28  Aligned_cols=187  Identities=33%  Similarity=0.451  Sum_probs=136.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHH
Q 020239          118 LRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  197 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  197 (329)
                      ..+..|+..|+.+-++.|+..|+.++..+.+|.|+||-||...+.+||++|+++|+++|..|..++||+|.|+..|+..+
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            44677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCCCCcCC--CCcH------------HHHHHH-cC-C------------HHHHHHHHHCCCCCCCCCCCCchH
Q 020239          198 TSLLVKEGASLNVDD--AGSF------------LCIAVA-RG-D------------SDLLKRVLSNGVDPNSRDYDHRTP  249 (329)
Q Consensus       198 v~~Ll~~~~~~~~~~--~~~~------------l~~A~~-~g-~------------~~~v~~Ll~~g~~~~~~~~~g~t~  249 (329)
                      +++|+++|+++-..+  ++.|            +-.+.. .| .            .+-+...+..|.+.+..+..|.|.
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~  201 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATA  201 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchH
Confidence            888888877654322  1111            111111 11 0            111122223667777777667788


Q ss_pred             HHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239          250 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  304 (329)
Q Consensus       250 L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~  304 (329)
                      ||.|+..|..++.++|++.|.+++.+|..||||||.|+--|+.++.++|.++|+.
T Consensus       202 lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~  256 (527)
T KOG0505|consen  202 LHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGAD  256 (527)
T ss_pred             HHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcc
Confidence            8888888888888888888887877777888888888888888888877777763

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=4.3e-24  Score=193.25  Aligned_cols=197  Identities=25%  Similarity=0.283  Sum_probs=131.1

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 020239          115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  194 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  194 (329)
                      ++.|.||.|+.+|+.+++++|++..+-++..+..|.+|||+|++.|+.+++|.++.++..+|..+..|.+|||.|+..|+
T Consensus        48 ~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh  127 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGH  127 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcc
Confidence            45567777777777777777777666666666667777777777777777777777766666666677777777777777


Q ss_pred             HHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCC--------CCCCCCCchHHHHHHHhCcHHHHHH
Q 020239          195 DGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDP--------NSRDYDHRTPLHVAASEGLYLMAKL  264 (329)
Q Consensus       195 ~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~--------~~~~~~g~t~L~~A~~~~~~~iv~~  264 (329)
                      .+++.+|+++|++.-.++  +.|++-+|++.|..++++.|++...++        ..++..+-+|||.|+.+|+.++++.
T Consensus       128 ~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~  207 (854)
T KOG0507|consen  128 LEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQA  207 (854)
T ss_pred             hHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHH
Confidence            777777777776666554  346677777777777777776542221        2234455567777777777777777


Q ss_pred             HHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccc
Q 020239          265 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYC  312 (329)
Q Consensus       265 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~~~~  312 (329)
                      |++.|.++|.....| |+||.|+..|..++|.+|++.|........++
T Consensus       208 ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~  254 (854)
T KOG0507|consen  208 LLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHG  254 (854)
T ss_pred             HHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccc
Confidence            777777776665554 67777777777777777777666554444443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=1.9e-23  Score=165.79  Aligned_cols=143  Identities=20%  Similarity=0.227  Sum_probs=103.0

Q ss_pred             cCCCCCCCCCCCChHHHHHHHcCcH----HHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHH---HHHHHHcCCCCCc
Q 020239          138 AGADLNKTDYDGRSPLHLATSRGYE----DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV---TSLLVKEGASLNV  210 (329)
Q Consensus       138 ~~~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~---v~~Ll~~~~~~~~  210 (329)
                      +|++++..+..+.+++|.|+..|+.    +++++|.+.|..++..|..|.||||+|+..|+.+.   +++|++.|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            3455666667777888888888877    55666777787788778888888888888777543   6677777776665


Q ss_pred             CC---CCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCC
Q 020239          211 DD---AGSFLCIAVARGDSDLLKRVLS-NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN  280 (329)
Q Consensus       211 ~~---~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~  280 (329)
                      ++   +.||||+|+..|+.+++++|++ .|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            43   4566777777777777777774 5777777777777777777777777777777777777777766654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=1.1e-23  Score=164.28  Aligned_cols=192  Identities=22%  Similarity=0.193  Sum_probs=174.4

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHH
Q 020239          120 FNSAAYHGDLYQLKGLIRAGAD-LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT  198 (329)
Q Consensus       120 l~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v  198 (329)
                      +--+.+.|+.++++..+.-.++ +...+.+|+++++.++-.++.+.+..++.+|...|..+..+++|+.+++...+.+.+
T Consensus        66 ~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~  145 (296)
T KOG0502|consen   66 LTVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVV  145 (296)
T ss_pred             cchhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHH
Confidence            3456778888888888776544 445677899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCC
Q 020239          199 SLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRW  278 (329)
Q Consensus       199 ~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~  278 (329)
                      ..+.+...+-..+.+.|||++|+..|++++|++|++.|+|++.......++|..|+..|..+||+.|+.++.|+|.-|-+
T Consensus       146 ~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwN  225 (296)
T KOG0502|consen  146 DLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWN  225 (296)
T ss_pred             HHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccC
Confidence            99888877777777889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccccc
Q 020239          279 GNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHY  311 (329)
Q Consensus       279 g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~~~  311 (329)
                      |.|||-+|++-++.++++.|+..|+.......+
T Consensus       226 GgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~ds  258 (296)
T KOG0502|consen  226 GGTPLLYAVRGNHVKCVESLLNSGADVTQEDDS  258 (296)
T ss_pred             CCceeeeeecCChHHHHHHHHhcCCCccccccc
Confidence            999999999999999999999999987766544

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=6.8e-24  Score=177.08  Aligned_cols=160  Identities=24%  Similarity=0.358  Sum_probs=143.6

Q ss_pred             ccCccchhhhHHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCChHHHHHHHc-----CcHHHHHHHHhcCCCccccCC-
Q 020239          108 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAG-ADLNKTDYDGRSPLHLATSR-----GYEDITLFLIQKGVDINIKDK-  180 (329)
Q Consensus       108 ~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~~~-  180 (329)
                      .++-.|..++|+||||+.++|+++|+.||+.| .+++..++.|+||+++|+..     .+.++|..|..-| ++|.+.. 
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ  338 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQ  338 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhh
Confidence            34446777889999999999999999999998 78999999999999999874     3678999998876 6776654 


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCchHHHHHHHhC
Q 020239          181 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLS-NGVDPNSRDYDHRTPLHVAASEG  257 (329)
Q Consensus       181 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~  257 (329)
                      .|+|+|++|+.+|+.++|+.|+..|+++|.+|  |.|+|++|+++|+.|+++.|+. -++|+...|.+|.|+|.+|...|
T Consensus       339 ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleag  418 (452)
T KOG0514|consen  339 HGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAG  418 (452)
T ss_pred             hcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcC
Confidence            49999999999999999999999999999876  5699999999999999999996 48999999999999999999999


Q ss_pred             cHHHHHHHHHC
Q 020239          258 LYLMAKLLLEA  268 (329)
Q Consensus       258 ~~~iv~~Ll~~  268 (329)
                      +-+|.-.|..+
T Consensus       419 h~eIa~mlYa~  429 (452)
T KOG0514|consen  419 HREIAVMLYAH  429 (452)
T ss_pred             chHHHHHHHHH
Confidence            99999999864

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=1.3e-22  Score=161.79  Aligned_cols=134  Identities=18%  Similarity=0.249  Sum_probs=104.5

Q ss_pred             CCCCCCChHHHHHHHcCcHHHHHHHHh------cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHH
Q 020239          144 KTDYDGRSPLHLATSRGYEDITLFLIQ------KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL  217 (329)
Q Consensus       144 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l  217 (329)
                      .++..|.||||+|+..|+.+++++|+.      .|++++.+|..|.||||+|+..|+.+++                   
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~-------------------   76 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLA-------------------   76 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHH-------------------
Confidence            466778899999999999999888754      2567777888888888888777663222                   


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCC-CCchHHHHHHHhCcHHHHHHHHH-CCCCccCCCCCCCcHHHHHHHcCCHHHH
Q 020239          218 CIAVARGDSDLLKRVLSNGVDPNSRDY-DHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLI  295 (329)
Q Consensus       218 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~iv  295 (329)
                              .+++++|++.|++++.++. .|+||||+|+..++.+++++|++ .|++++.+|..|+|||++|+..++.+++
T Consensus        77 --------~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv  148 (169)
T PHA02741         77 --------AEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMM  148 (169)
T ss_pred             --------HHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHH
Confidence                    2555666667777777774 78888888888888888888887 5888888888888888888888888888


Q ss_pred             HHHHHcCCC
Q 020239          296 KLLEDAKCT  304 (329)
Q Consensus       296 ~~L~~~~~~  304 (329)
                      ++|++.+++
T Consensus       149 ~~L~~~~~~  157 (169)
T PHA02741        149 QILREIVAT  157 (169)
T ss_pred             HHHHHHHHH
Confidence            888887654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=6.4e-23  Score=185.76  Aligned_cols=213  Identities=24%  Similarity=0.320  Sum_probs=177.3

Q ss_pred             hhhhcccCCchhhhhhhhccccccccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHH
Q 020239           84 FVCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYED  163 (329)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~  163 (329)
                      .+.++++.....+....++.+..+++.  +..+.+|||+|+..|+.+++|.++.++..+|..+..|.||||.|++.||.+
T Consensus        52 alhha~Lng~~~is~llle~ea~ldl~--d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~d  129 (854)
T KOG0507|consen   52 LLHHAVLNGQNQISKLLLDYEALLDLC--DTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLE  129 (854)
T ss_pred             HHHHHHhcCchHHHHHHhcchhhhhhh--hccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchH
Confidence            333444444444444444444444443  367789999999999999999999999888999999999999999999999


Q ss_pred             HHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc----------CCCCcHHHHHHHcCCHHHHHHHH
Q 020239          164 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV----------DDAGSFLCIAVARGDSDLLKRVL  233 (329)
Q Consensus       164 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~----------~~~~~~l~~A~~~g~~~~v~~Ll  233 (329)
                      ++.+|+++|+++..+|..+.|++..|++.|+.++++.|++.......          ....+|+|+|+++|+.++++.|+
T Consensus       130 vv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll  209 (854)
T KOG0507|consen  130 VVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALL  209 (854)
T ss_pred             HHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHH
Confidence            99999999999999999999999999999999999999987332221          12346899999999999999999


Q ss_pred             HCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcC---CHHHHHHHH
Q 020239          234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG---NKNLIKLLE  299 (329)
Q Consensus       234 ~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~---~~~iv~~L~  299 (329)
                      +.|.++|.....| |+||.|+..|..++|.+|++-|++...+|.+|+|+|++-...-   ..+++-++.
T Consensus       210 ~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~ei~ga~~  277 (854)
T KOG0507|consen  210 EAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYEIAGAVK  277 (854)
T ss_pred             hcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhhhhhhhh
Confidence            9999999998876 9999999999999999999999999999999999999766533   345554443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.89  E-value=4.6e-22  Score=157.79  Aligned_cols=140  Identities=16%  Similarity=0.177  Sum_probs=123.3

Q ss_pred             cCCCccccCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCCCcC--CCCcHHHHHHHcCCHH---HHHHHHHCCCCCCC
Q 020239          171 KGVDINIKDKFGNTPLLEAIKCGHD----GVTSLLVKEGASLNVD--DAGSFLCIAVARGDSD---LLKRVLSNGVDPNS  241 (329)
Q Consensus       171 ~g~~~~~~~~~g~t~l~~A~~~~~~----~~v~~Ll~~~~~~~~~--~~~~~l~~A~~~g~~~---~v~~Ll~~g~~~~~  241 (329)
                      +|++++..+..+.+++|.|++.|+.    +++++|.+.+..++..  .+.||||+|+..|+.+   ++++|++.|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            4667777788889999999999998    5667788888877754  4789999999998865   48999999999999


Q ss_pred             CC-CCCchHHHHHHHhCcHHHHHHHHH-CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 020239          242 RD-YDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH  310 (329)
Q Consensus       242 ~~-~~g~t~L~~A~~~~~~~iv~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~~  310 (329)
                      ++ ..|.||||+|+..++.+++++|++ .|++++.+|..|+||||+|+..++.+++++|+++|+..-.+..
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~  159 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLS  159 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccc
Confidence            98 589999999999999999999995 8999999999999999999999999999999999987655433

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.6e-21  Score=166.55  Aligned_cols=151  Identities=24%  Similarity=0.234  Sum_probs=110.0

Q ss_pred             CCCCCCh-HHHHHHHcCcHHHHHHHHhcCCCccccC----CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC---CCCcH
Q 020239          145 TDYDGRS-PLHLATSRGYEDITLFLIQKGVDINIKD----KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD---DAGSF  216 (329)
Q Consensus       145 ~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~---~~~~~  216 (329)
                      +|..|.| +||.|+..|+.+++++|+++|++++.++    ..|.||||+|+..++.+++++|+++|++++..   .+.||
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp  107 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP  107 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence            4444444 4556666677777777777777777653    46777777777777777777777777777753   25677


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHH
Q 020239          217 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK  296 (329)
Q Consensus       217 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~  296 (329)
                      ||.|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++..+.  |..   .+..+.+|.+++   ++.++++
T Consensus       108 Lh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~---~n~ei~~  179 (300)
T PHA02884        108 LYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKIL---INFDILK  179 (300)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhh---ccHHHHH
Confidence            88888888888888888888888888888888888888888888776554  322   244566777764   4678888


Q ss_pred             HHHHcCC
Q 020239          297 LLEDAKC  303 (329)
Q Consensus       297 ~L~~~~~  303 (329)
                      +|++++.
T Consensus       180 ~Lish~v  186 (300)
T PHA02884        180 ILVSHFI  186 (300)
T ss_pred             HHHHHHH
Confidence            8888877

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.4e-21  Score=166.83  Aligned_cols=149  Identities=21%  Similarity=0.186  Sum_probs=123.5

Q ss_pred             ccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCCcC------CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCch
Q 020239          177 IKDKFGNT-PLLEAIKCGHDGVTSLLVKEGASLNVD------DAGSFLCIAVARGDSDLLKRVLSNGVDPNSR-DYDHRT  248 (329)
Q Consensus       177 ~~~~~g~t-~l~~A~~~~~~~~v~~Ll~~~~~~~~~------~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t  248 (329)
                      .+|..+.+ +|+.|+..|+.+++++|+++|++++..      .+.||||+|+..++.+++++|+++|++++.+ +..|.|
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T  106 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT  106 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence            45566554 566777889999999999999999975      5779999999999999999999999999986 468999


Q ss_pred             HHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccccchhHHHHHhhhc
Q 020239          249 PLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAENLLL  325 (329)
Q Consensus       249 ~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~  325 (329)
                      |||+|+..++.+++++|+++|++++.+|..|.||+|+|+..++.+++..+...+.+.....+....+..++++.|++
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ei~~~Lis  183 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNEISNFYKHPKKILINFDILKILVS  183 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCcccccccChhhhhccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998777654433332222211235688886653

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=6.3e-21  Score=152.00  Aligned_cols=131  Identities=26%  Similarity=0.308  Sum_probs=105.6

Q ss_pred             ccchhhhHHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCChHHHHHHHcCc----HHHHHHHHhcCCCccccCC
Q 020239          111 KHEAELALRFNSAAYHGDLYQLKGLIR------AGADLNKTDYDGRSPLHLATSRGY----EDITLFLIQKGVDINIKDK  180 (329)
Q Consensus       111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~------~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~  180 (329)
                      ..+..+.++||.|+..|+.++++.|+.      .|++++.+|..|.||||+|+..|+    .+++++|+++|++++.++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            345567799999999999999999864      357889999999999999999998    5889999999999998875


Q ss_pred             -CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcH
Q 020239          181 -FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLY  259 (329)
Q Consensus       181 -~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  259 (329)
                       .|.||||+|+..++.+++++|++.                              .|++++..|..|+||||+|+..++.
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~------------------------------~g~~~~~~n~~g~tpL~~A~~~~~~  145 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQ------------------------------PGIDLHFCNADNKSPFELAIDNEDV  145 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhC------------------------------CCCCCCcCCCCCCCHHHHHHHCCCH
Confidence             788888888887776666666642                              2455566677788888888888888


Q ss_pred             HHHHHHHHCCCC
Q 020239          260 LMAKLLLEAGAS  271 (329)
Q Consensus       260 ~iv~~Ll~~g~~  271 (329)
                      +++++|++.++.
T Consensus       146 ~iv~~L~~~~~~  157 (169)
T PHA02741        146 AMMQILREIVAT  157 (169)
T ss_pred             HHHHHHHHHHHH
Confidence            888888876544

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.86  E-value=4.6e-21  Score=150.63  Aligned_cols=91  Identities=20%  Similarity=0.227  Sum_probs=67.1

Q ss_pred             CcHHHHHHHcCCH---HHHHHHHHCCCCCCCCC-CCCchHHHHHHHhCcHHHHHHHHH-CCCCccCCCCCCCcHHHHHHH
Q 020239          214 GSFLCIAVARGDS---DLLKRVLSNGVDPNSRD-YDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRM  288 (329)
Q Consensus       214 ~~~l~~A~~~g~~---~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~-~g~~~~~~~~~g~t~l~~A~~  288 (329)
                      .||||+|+..|+.   +++++|++.|++++.++ ..|+||||+|+..++.+++++|++ .|++++.+|..|+||||+|+.
T Consensus        56 ~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~  135 (154)
T PHA02736         56 KQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACE  135 (154)
T ss_pred             CEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHH
Confidence            3444444444443   34566777777777776 478888888888888888888887 478888888888888888888


Q ss_pred             cCCHHHHHHHHHcCCC
Q 020239          289 CGNKNLIKLLEDAKCT  304 (329)
Q Consensus       289 ~~~~~iv~~L~~~~~~  304 (329)
                      .|+.+++++|+++|+.
T Consensus       136 ~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736        136 RHDAKMMNILRAKGAQ  151 (154)
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            8888888888887764

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.85  E-value=4.1e-21  Score=150.93  Aligned_cols=129  Identities=23%  Similarity=0.239  Sum_probs=101.0

Q ss_pred             CCCCCCCChHHHHHHHcCcHHHHHHHHhcCC-------CccccCCCCCcHHHHHHHcCCH---HHHHHHHHcCCCCCcCC
Q 020239          143 NKTDYDGRSPLHLATSRGYEDITLFLIQKGV-------DINIKDKFGNTPLLEAIKCGHD---GVTSLLVKEGASLNVDD  212 (329)
Q Consensus       143 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-------~~~~~~~~g~t~l~~A~~~~~~---~~v~~Ll~~~~~~~~~~  212 (329)
                      +.+|..|.||||+|+..|+.  +.++..++.       .++..|..|.||||+|+..|+.   +++++|++.|++++..+
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~   88 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKE   88 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccC
Confidence            45567788888888888873  333322221       1234577788888888888876   45778888888887653


Q ss_pred             ---CCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCcc
Q 020239          213 ---AGSFLCIAVARGDSDLLKRVLS-NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  273 (329)
Q Consensus       213 ---~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~  273 (329)
                         +.||||+|+..|+.+++++|++ .|++++.++..|.||||+|+..|+.+++++|+++|++.+
T Consensus        89 ~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         89 RVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence               5688888888899999999987 489999999999999999999999999999999998875

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.83  E-value=5.6e-21  Score=178.78  Aligned_cols=284  Identities=21%  Similarity=0.196  Sum_probs=155.8

Q ss_pred             hHHHhHhCchhhhhHhhhhcccccccchhhhchhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhh
Q 020239            5 PAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYF   84 (329)
Q Consensus         5 ~~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (329)
                      +-+|...||.|.||+|+.+|+++.-+.-... .   .....-.++....+..+...... .     +.-.....+..+.+
T Consensus       761 LT~acaggh~e~vellv~rganiehrdkkgf-~---plImaatagh~tvV~~llk~ha~-v-----eaQsdrtkdt~lSl  830 (2131)
T KOG4369|consen  761 LTSACAGGHREEVELLVVRGANIEHRDKKGF-V---PLIMAATAGHITVVQDLLKAHAD-V-----EAQSDRTKDTMLSL  830 (2131)
T ss_pred             ccccccCccHHHHHHHHHhcccccccccccc-h---hhhhhcccCchHHHHHHHhhhhh-h-----hhhcccccCceEEE
Confidence            4578899999999999999998874422111 1   11111234444444444431110 0     01111222333344


Q ss_pred             hhhcccCCchhhhhhhhccccccccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CCCChHHHHHHHcCcH
Q 020239           85 VCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTD--YDGRSPLHLATSRGYE  162 (329)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~--~~g~t~L~~A~~~g~~  162 (329)
                      .|.++......+.+.....+     ...+-...+||..|...|.+++++.|+..|.++|.+.  +-|.+||++|..+||.
T Consensus       831 acsggr~~vvelLl~~gank-----ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~  905 (2131)
T KOG4369|consen  831 ACSGGRTRVVELLLNAGANK-----EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQ  905 (2131)
T ss_pred             ecCCCcchHHHHHHHhhccc-----cccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhcccc
Confidence            44433332222222222221     1222334477888888888888888888887777664  4577888888888888


Q ss_pred             HHHHHHHhcCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCC
Q 020239          163 DITLFLIQKGVDINIKD-KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDP  239 (329)
Q Consensus       163 ~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~  239 (329)
                      +.++.|++.|.++|..- ....|+|..|+..|+.+++.+|+...+++..+.  +.|||+-++..|.+++=..|+..|+|.
T Consensus       906 ~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~  985 (2131)
T KOG4369|consen  906 AATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADT  985 (2131)
T ss_pred             HHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhccccc
Confidence            88888888777776442 224456666666666666666665554444332  345666666666666666666666555


Q ss_pred             CCCC--CCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239          240 NSRD--YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  303 (329)
Q Consensus       240 ~~~~--~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~  303 (329)
                      |..-  ....|+|-.++..|+...|..|+...+.++.+|.+|.|+|..|+.-|+...+.+|.++++
T Consensus       986 nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~a 1051 (2131)
T KOG4369|consen  986 NASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVA 1051 (2131)
T ss_pred             ccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhccc
Confidence            4421  122344555555555555555555555555555555555555555555555555555544

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.82  E-value=3e-19  Score=163.96  Aligned_cols=184  Identities=25%  Similarity=0.328  Sum_probs=157.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcC---------CCCCCCCCCCChHHHHHHHc---CcHHHHHHHHhcCCC----cccc-CC
Q 020239          118 LRFNSAAYHGDLYQLKGLIRAG---------ADLNKTDYDGRSPLHLATSR---GYEDITLFLIQKGVD----INIK-DK  180 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~~---------~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~----~~~~-~~  180 (329)
                      .++..|...+..+.+..+++.+         .+++.+...|.|+||.|..+   ++.++++.|++.-..    +... ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            5677888888888888877655         45666677899999999873   456888888886221    1122 23


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC-------------------------CCCcHHHHHHHcCCHHHHHHHHHC
Q 020239          181 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-------------------------DAGSFLCIAVARGDSDLLKRVLSN  235 (329)
Q Consensus       181 ~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~-------------------------~~~~~l~~A~~~g~~~~v~~Ll~~  235 (329)
                      .|+||||+|+.+.+.++|++|++.|+|++.+                         -|..||.+|+-.++.+++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            5999999999999999999999999988763                         134689999999999999999999


Q ss_pred             CCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCC--ccCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020239          236 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS--VFTKDRWGNTPLDEGRMCGNKNLIKLLEDA  301 (329)
Q Consensus       236 g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~  301 (329)
                      |+|++.+|.+|+|.||..+..-..++.+.++++|++  ...+|+.|-|||.+|++.|..+|.+.+++.
T Consensus       263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999999999999999999999999999  889999999999999999999999999998

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.82  E-value=3.7e-19  Score=134.14  Aligned_cols=143  Identities=29%  Similarity=0.287  Sum_probs=107.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239          117 ALRFNSAAYHGDLYQLKGLIRAGAD-LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  195 (329)
Q Consensus       117 ~~~l~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  195 (329)
                      ...+..|+..+.+..|+.||+..++ +|.+|.+|.||||-|+.+||.++++.|+..|++.+.+...|+||||.||.-++.
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~  143 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNF  143 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccch
Confidence            3557889999999999999988766 899999999999999999999999999999999999888899988888776666


Q ss_pred             HHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCc-HHHHHHHHH-CCCCcc
Q 020239          196 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL-YLMAKLLLE-AGASVF  273 (329)
Q Consensus       196 ~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~iv~~Ll~-~g~~~~  273 (329)
                      +++-.|+++|++++                               ....-..||||.|+..++ ...+++|+. .++++-
T Consensus       144 ~va~~LLqhgaDVn-------------------------------A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg  192 (228)
T KOG0512|consen  144 EVAGRLLQHGADVN-------------------------------AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG  192 (228)
T ss_pred             hHHHHHHhccCccc-------------------------------ccccccchhhHHhhcccchHHHHHHHhhccccChh
Confidence            66666666655554                               444445566666665544 333444443 566666


Q ss_pred             CCCCCCCcHHHHHHHcC
Q 020239          274 TKDRWGNTPLDEGRMCG  290 (329)
Q Consensus       274 ~~~~~g~t~l~~A~~~~  290 (329)
                      .++..+.||+.+|.+.+
T Consensus       193 ~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  193 LKNNLEETAFDIARRTS  209 (228)
T ss_pred             hhcCccchHHHHHHHhh
Confidence            66777777777777654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=5.9e-19  Score=133.03  Aligned_cols=108  Identities=23%  Similarity=0.246  Sum_probs=81.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCC-H
Q 020239          214 GSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN-K  292 (329)
Q Consensus       214 ~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~  292 (329)
                      .||||-|+.+|+.++++.|+..|++++.+...||||||-||..++.+++-+|+++|+|++......+||||+|+...+ .
T Consensus        98 YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r  177 (228)
T KOG0512|consen   98 YTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSR  177 (228)
T ss_pred             ccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhhcccchH
Confidence            344445555566666666666777788889999999999999999999999999999999998888999999999876 4


Q ss_pred             HHHHHHHHcCCCCccccccccchhHHHHH
Q 020239          293 NLIKLLEDAKCTQLSEFHYCSQGMIGIAE  321 (329)
Q Consensus       293 ~iv~~L~~~~~~~~~~~~~~~~~~~~~~~  321 (329)
                      +.+++|+.............+...+.|++
T Consensus       178 ~t~~~Ll~dryi~pg~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  178 DTLELLLHDRYIHPGLKNNLEETAFDIAR  206 (228)
T ss_pred             HHHHHHhhccccChhhhcCccchHHHHHH
Confidence            67788877655443333334444455544

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.81  E-value=1.9e-19  Score=157.95  Aligned_cols=156  Identities=24%  Similarity=0.260  Sum_probs=133.5

Q ss_pred             HHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHH
Q 020239          152 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLL  229 (329)
Q Consensus       152 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v  229 (329)
                      .+.-|+..|..+=+..|+..|++++..+.+|.|++|.++.-.+.++|++|+++|++++..+  ++||+|.|+.+|+..++
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~  122 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIV  122 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHH
Confidence            4667888999999999999999999999999999999999999999999999999999876  57999999999999999


Q ss_pred             HHHHHCCCCCCCCCCCCchHHHHHHH-------------hC--------------cHHHHHHHHHCCCCccCCCCCCCcH
Q 020239          230 KRVLSNGVDPNSRDYDHRTPLHVAAS-------------EG--------------LYLMAKLLLEAGASVFTKDRWGNTP  282 (329)
Q Consensus       230 ~~Ll~~g~~~~~~~~~g~t~L~~A~~-------------~~--------------~~~iv~~Ll~~g~~~~~~~~~g~t~  282 (329)
                      ++|+..|+++-..+..|..|+..+..             .|              --++-+|+ ..|.+.+.++..|.|.
T Consensus       123 ~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l-~~G~~~d~~~~rG~T~  201 (527)
T KOG0505|consen  123 EYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWL-NAGAELDARHARGATA  201 (527)
T ss_pred             HHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHH-hccccccccccccchH
Confidence            99999999988888877777555421             11              02233444 4888899998889999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCccc
Q 020239          283 LDEGRMCGNKNLIKLLEDAKCTQLSE  308 (329)
Q Consensus       283 l~~A~~~~~~~iv~~L~~~~~~~~~~  308 (329)
                      ||+|+.+|+.++.++|+++|...-..
T Consensus       202 lHvAaa~Gy~e~~~lLl~ag~~~~~~  227 (527)
T KOG0505|consen  202 LHVAAANGYTEVAALLLQAGYSVNIK  227 (527)
T ss_pred             HHHHHhhhHHHHHHHHHHhccCcccc
Confidence            99999999999999999998865444

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=1.3e-19  Score=147.25  Aligned_cols=137  Identities=31%  Similarity=0.429  Sum_probs=105.6

Q ss_pred             HHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q 020239          168 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYD  245 (329)
Q Consensus       168 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~  245 (329)
                      |-+..-|.|.-|.-|.+|||+|++.|+..+++.|+..|+.+|..+  ..||||+|+.+|+.++|+.|++..+|+|..+..
T Consensus        20 ld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavneh   99 (448)
T KOG0195|consen   20 LDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEH   99 (448)
T ss_pred             ecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhcc
Confidence            333444566666666667777777777677777776666666543  457888888888888999999989999999999


Q ss_pred             CchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239          246 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  304 (329)
Q Consensus       246 g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~  304 (329)
                      |+|||||||..|+..+.+-|+..|+.++.-|+.|.||++.|.-.-..-+.+.-.++|.+
T Consensus       100 gntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~  158 (448)
T KOG0195|consen  100 GNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQS  158 (448)
T ss_pred             CCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999987655444444444455543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.80  E-value=1e-18  Score=123.94  Aligned_cols=88  Identities=36%  Similarity=0.510  Sum_probs=46.7

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHH
Q 020239          186 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  265 (329)
Q Consensus       186 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~L  265 (329)
                      ||+|++.|+.+++++|++.+.+++.  +.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~--~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L   78 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL--GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLL   78 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS--SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC--CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            3445555555555555554444444  44455555555555555555555555555555555555555555555555555


Q ss_pred             HHCCCCccCC
Q 020239          266 LEAGASVFTK  275 (329)
Q Consensus       266 l~~g~~~~~~  275 (329)
                      +++|++++.+
T Consensus        79 l~~g~~~~~~   88 (89)
T PF12796_consen   79 LEHGADVNIR   88 (89)
T ss_dssp             HHTTT-TTSS
T ss_pred             HHcCCCCCCc
Confidence            5555555544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.79  E-value=1.5e-18  Score=123.12  Aligned_cols=89  Identities=39%  Similarity=0.586  Sum_probs=79.3

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHH
Q 020239          120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS  199 (329)
Q Consensus       120 l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~  199 (329)
                      ||.|++.|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            6899999999999999999887765    889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCcCC
Q 020239          200 LLVKEGASLNVDD  212 (329)
Q Consensus       200 ~Ll~~~~~~~~~~  212 (329)
                      +|+++|++++.++
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999998887653

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.76  E-value=3.3e-17  Score=123.56  Aligned_cols=123  Identities=46%  Similarity=0.673  Sum_probs=84.8

Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCC
Q 020239          146 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGD  225 (329)
Q Consensus       146 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~  225 (329)
                      +..|.||||.|+..++.+++++|++.+.+.+..+..|.+|++.|+..++.+++++|                        
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~l------------------------   59 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLL------------------------   59 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHH------------------------
Confidence            44566666666666666666666666655555555555665555555555555544                        


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 020239          226 SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE  299 (329)
Q Consensus       226 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~  299 (329)
                             ++.|.+++..+..|.||+|+|+..++.+++++|+++|.+.+..+..|.||+++|...++.+++++|+
T Consensus        60 -------l~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          60 -------LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             -------HHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence                   4445455566677778888888888888888888888777777888888888888888888888763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=7.9e-17  Score=121.50  Aligned_cols=121  Identities=46%  Similarity=0.658  Sum_probs=101.7

Q ss_pred             hhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 020239          114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  193 (329)
Q Consensus       114 ~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  193 (329)
                      ..+.++|++|+..++.+++++|++.+.+.+..+..|.||+|.|+..++.+++++|++.|.+++..+..+.||+|+|+..+
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~   84 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNG   84 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence            45679999999999999999999999988888999999999999999999999999999888888888889988888887


Q ss_pred             CHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHH
Q 020239          194 HDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  265 (329)
Q Consensus       194 ~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~L  265 (329)
                      +.+++++|++.+                               .+++..+..|.||+++|...++.+++++|
T Consensus        85 ~~~~~~~L~~~~-------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~L  125 (126)
T cd00204          85 NLDVVKLLLKHG-------------------------------ADVNARDKDGRTPLHLAAKNGHLEVVKLL  125 (126)
T ss_pred             cHHHHHHHHHcC-------------------------------CCCcccCCCCCCHHHHHHhcCCHHHHHHh
Confidence            777777777765                               34455556666777777777777777665

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.73  E-value=4.8e-18  Score=159.51  Aligned_cols=192  Identities=28%  Similarity=0.313  Sum_probs=105.8

Q ss_pred             chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccc-CCCCCcHHHHHHH
Q 020239          113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK-DKFGNTPLLEAIK  191 (329)
Q Consensus       113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~l~~A~~  191 (329)
                      +....|+|-.|+..|+.|.+++|+.+|+++..+|+.|.+||.+|+..||..+|+.|+.+.+++... |+.+.|+|.+||.
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs  833 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS  833 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC
Confidence            334445666666666666666666666666666666666666666666666666666655555433 2334555555555


Q ss_pred             cCCHHHHHHHHHcCCC---------------------------------CCcCCCC----cHHHHHHHcCCHHHHHHHHH
Q 020239          192 CGHDGVTSLLVKEGAS---------------------------------LNVDDAG----SFLCIAVARGDSDLLKRVLS  234 (329)
Q Consensus       192 ~~~~~~v~~Ll~~~~~---------------------------------~~~~~~~----~~l~~A~~~g~~~~v~~Ll~  234 (329)
                      .|+.++|++|+..|++                                 ++.+.+.    .||++|..+|+.+.+..|++
T Consensus       834 ggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~  913 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQ  913 (2131)
T ss_pred             CCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhc
Confidence            5555555555555444                                 4433321    34555555555555555555


Q ss_pred             CCCCCCCCC-CCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239          235 NGVDPNSRD-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  304 (329)
Q Consensus       235 ~g~~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~  304 (329)
                      .|.|+|..- .+.+|+|-+|+..|+.+++..||...+++..+-..|.|||.-++.-|+.|+=..|+..|++
T Consensus       914 ~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad  984 (2131)
T KOG4369|consen  914 PGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGAD  984 (2131)
T ss_pred             ccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccc
Confidence            555554432 3344555555555555555555555555555555566666666666666666666665553

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.72  E-value=2.9e-17  Score=133.78  Aligned_cols=117  Identities=29%  Similarity=0.359  Sum_probs=86.9

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcH
Q 020239          139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSF  216 (329)
Q Consensus       139 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~  216 (329)
                      .-|.|.-|..|.+|||+|+..|+..+++.|+++|+.+|..+....||||.|+..|+-++|+.|++..+++|..+  ++||
T Consensus        24 ehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntp  103 (448)
T KOG0195|consen   24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTP  103 (448)
T ss_pred             ccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCc
Confidence            34566667777777777777777777777777777777777666777777777777777777777777776543  5677


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHH
Q 020239          217 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS  255 (329)
Q Consensus       217 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  255 (329)
                      |||||..|...+.+-|+..|+-++..+++|.|||..|--
T Consensus       104 lhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen  104 LHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             hhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhch
Confidence            777777788788888888888888888888888877643

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.70  E-value=5.3e-16  Score=142.89  Aligned_cols=163  Identities=24%  Similarity=0.338  Sum_probs=141.9

Q ss_pred             ccccCccchhhhHHHHHHHHc---CCHHHHHHHHHcCCC-CCC----CCCCCChHHHHHHHcCcHHHHHHHHhcCCCccc
Q 020239          106 TFHIGKHEAELALRFNSAAYH---GDLYQLKGLIRAGAD-LNK----TDYDGRSPLHLATSRGYEDITLFLIQKGVDINI  177 (329)
Q Consensus       106 ~~~~~~~~~~~~~~l~~A~~~---g~~~~v~~Ll~~~~~-~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~  177 (329)
                      .+..+.....+.|.||.|..+   ++.++++.|++.-.. +|.    ....|+||||.|+.+.+.++|++|++.|+|++.
T Consensus       133 ~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~a  212 (782)
T KOG3676|consen  133 DWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHA  212 (782)
T ss_pred             hhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhh
Confidence            455666677899999999984   455889999986433 222    235699999999999999999999999999875


Q ss_pred             cC-----------------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHH
Q 020239          178 KD-----------------------KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRV  232 (329)
Q Consensus       178 ~~-----------------------~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~L  232 (329)
                      +.                       ..|..||.+|+..++.+++++|+++|+|++.+|  |+|.||..+.+-..++...+
T Consensus       213 Ra~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~  292 (782)
T KOG3676|consen  213 RACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLA  292 (782)
T ss_pred             HhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHH
Confidence            41                       247899999999999999999999999999987  66899999999999999999


Q ss_pred             HHCCCC--CCCCCCCCchHHHHHHHhCcHHHHHHHHHC
Q 020239          233 LSNGVD--PNSRDYDHRTPLHVAASEGLYLMAKLLLEA  268 (329)
Q Consensus       233 l~~g~~--~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~  268 (329)
                      ++.|++  ...++..|-|||-.|+..|..++.+.+++.
T Consensus       293 L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  293 LELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999  889999999999999999999999999987

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.66  E-value=8.6e-16  Score=103.65  Aligned_cols=102  Identities=25%  Similarity=0.236  Sum_probs=86.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHH
Q 020239          185 PLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAK  263 (329)
Q Consensus       185 ~l~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~  263 (329)
                      -+.+++.+|..+-|+-.+..|.+++. ..+++|||+|+.+|..+++++|+..|++++.+|++|-|||..|+..|+.++|+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVk   84 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVK   84 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHH
Confidence            45677778888888777777766664 35678889999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCccCCCCCCCcHHHHH
Q 020239          264 LLLEAGASVFTKDRWGNTPLDEG  286 (329)
Q Consensus       264 ~Ll~~g~~~~~~~~~g~t~l~~A  286 (329)
                      +|+++|++...+...|.+.++.+
T Consensus        85 lLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   85 LLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHcCcccceeCCCchhHHhhc
Confidence            99999999988888888776643

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.63  E-value=7.1e-15  Score=122.76  Aligned_cols=133  Identities=41%  Similarity=0.567  Sum_probs=107.4

Q ss_pred             CCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHc
Q 020239          144 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVAR  223 (329)
Q Consensus       144 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~  223 (329)
                      ..+..+.++++.++..+..+++++++..|.+++.++..|.||+|+|+..++.                          ..
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~--------------------------~~  121 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNP--------------------------PE  121 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCc--------------------------cc
Confidence            4455677888888888888888888888888888888888888888887773                          23


Q ss_pred             CCHHHHHHHHHCCC---CCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 020239          224 GDSDLLKRVLSNGV---DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  300 (329)
Q Consensus       224 g~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~  300 (329)
                      ++.++++.|++.|+   +.+.++..|.||||+|+..|+.++++.|++.|++++.++..|.|+++.|+..++.++++.+++
T Consensus       122 ~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             chHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHh
Confidence            34555555555555   555668889999999999999999999999999999888899999999999999999999988


Q ss_pred             cC
Q 020239          301 AK  302 (329)
Q Consensus       301 ~~  302 (329)
                      .+
T Consensus       202 ~~  203 (235)
T COG0666         202 KG  203 (235)
T ss_pred             cC
Confidence            75

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.57  E-value=1e-14  Score=98.53  Aligned_cols=91  Identities=30%  Similarity=0.453  Sum_probs=84.3

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHH
Q 020239          217 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK  296 (329)
Q Consensus       217 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~  296 (329)
                      +.+++++|..+.|+-.+..|.++|..- .|++|||||+-.|+.+++++|+..|++++.+|+.|.|||--|+-.||.++|+
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVk   84 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVK   84 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHH
Confidence            578899999999999999998887765 7999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCccc
Q 020239          297 LLEDAKCTQLSE  308 (329)
Q Consensus       297 ~L~~~~~~~~~~  308 (329)
                      +|+++|++....
T Consensus        85 lLL~~GAdrt~~   96 (117)
T KOG4214|consen   85 LLLQNGADRTIH   96 (117)
T ss_pred             HHHHcCccccee
Confidence            999999975443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.55  E-value=6.4e-15  Score=94.08  Aligned_cols=55  Identities=42%  Similarity=0.542  Sum_probs=33.5

Q ss_pred             HHHCC-CCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHH
Q 020239          232 VLSNG-VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG  286 (329)
Q Consensus       232 Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A  286 (329)
                      |++.| .+++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 89999999999999999999999999999999999999999999999987

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.54  E-value=7.9e-14  Score=116.37  Aligned_cols=127  Identities=38%  Similarity=0.508  Sum_probs=102.1

Q ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCc-----HHHHHHHHhcCC---CccccCCCCC
Q 020239          112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY-----EDITLFLIQKGV---DINIKDKFGN  183 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~---~~~~~~~~g~  183 (329)
                      .+....++++.++..++.+++++++..|++++.++..|.||+|+|+..++     .+++++|++.|+   ..+.+|..|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            34445689999999999999999999999999999999999999999999     999999999999   5566688889


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHH
Q 020239          184 TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAK  263 (329)
Q Consensus       184 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~  263 (329)
                      ||+|+|+..|+.++++.|++.+++++.                               .+..|.|+++.|+..++.++++
T Consensus       149 tpl~~A~~~~~~~~~~~ll~~~~~~~~-------------------------------~~~~g~t~l~~a~~~~~~~~~~  197 (235)
T COG0666         149 TPLHWAALNGDADIVELLLEAGADPNS-------------------------------RNSYGVTALDPAAKNGRIELVK  197 (235)
T ss_pred             chhHHHHHcCchHHHHHHHhcCCCCcc-------------------------------cccCCCcchhhhcccchHHHHH
Confidence            998888888887777777777555544                               4555666666666666666666


Q ss_pred             HHHHCC
Q 020239          264 LLLEAG  269 (329)
Q Consensus       264 ~Ll~~g  269 (329)
                      .+++.+
T Consensus       198 ~l~~~~  203 (235)
T COG0666         198 LLLDKG  203 (235)
T ss_pred             HHHhcC
Confidence            666543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.54  E-value=1.8e-14  Score=91.51  Aligned_cols=54  Identities=44%  Similarity=0.597  Sum_probs=40.2

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 020239          246 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE  299 (329)
Q Consensus       246 g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~  299 (329)
                      |+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            578888888888888888888888888888888888888888888888888875

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.48  E-value=4.8e-14  Score=89.99  Aligned_cols=55  Identities=45%  Similarity=0.664  Sum_probs=33.2

Q ss_pred             HHHcC-CCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHH
Q 020239          135 LIRAG-ADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  189 (329)
Q Consensus       135 Ll~~~-~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  189 (329)
                      |++.| .+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 88999999999999999999999999999999999999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.46  E-value=5.7e-13  Score=127.63  Aligned_cols=100  Identities=29%  Similarity=0.384  Sum_probs=52.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHH
Q 020239          185 PLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMA  262 (329)
Q Consensus       185 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv  262 (329)
                      .|+.|+..|+.+.++.|++.|++++..+  +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            3455555555555555555555554432  34555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHC-------CCCccCCCCCCCcHHH
Q 020239          263 KLLLEA-------GASVFTKDRWGNTPLD  284 (329)
Q Consensus       263 ~~Ll~~-------g~~~~~~~~~g~t~l~  284 (329)
                      ++|+++       |++.+..+..|.+|+.
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~  193 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSL  193 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccc
Confidence            555554       4444444444444443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.45  E-value=2.3e-13  Score=86.38  Aligned_cols=52  Identities=40%  Similarity=0.627  Sum_probs=23.1

Q ss_pred             ChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 020239          150 RSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL  201 (329)
Q Consensus       150 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L  201 (329)
                      .||||+|+..|+.+++++|+++|.+++.+|..|.||||+|+..|+.+++++|
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            4455555555555555555555555554444455555555555555555444

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.45  E-value=6.7e-13  Score=127.14  Aligned_cols=88  Identities=36%  Similarity=0.520  Sum_probs=85.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHH
Q 020239          117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  196 (329)
Q Consensus       117 ~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  196 (329)
                      ...|+.|+..|+.+.++.|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHc
Q 020239          197 VTSLLVKE  204 (329)
Q Consensus       197 ~v~~Ll~~  204 (329)
                      ++++|+++
T Consensus       163 iv~~Ll~~  170 (664)
T PTZ00322        163 VVQLLSRH  170 (664)
T ss_pred             HHHHHHhC
Confidence            99999998

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.45  E-value=3.8e-13  Score=118.17  Aligned_cols=116  Identities=26%  Similarity=0.325  Sum_probs=97.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHH
Q 020239          118 LRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  197 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  197 (329)
                      ..|..|+..|.+++|+.++..=-|+...+..|.|+||.|+..||.+||+||+++|+++|..|..|+||||+|+..++..+
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHH
Confidence            34778999999999999998878888889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCc---CCCCcHHHHH--HHcCCHHHHHHHH
Q 020239          198 TSLLVKEGASLNV---DDAGSFLCIA--VARGDSDLLKRVL  233 (329)
Q Consensus       198 v~~Ll~~~~~~~~---~~~~~~l~~A--~~~g~~~~v~~Ll  233 (329)
                      ++.|++.|+-+-.   .|..|+...+  .+.|..++.+||.
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            9999999887654   3344554332  2345666777765

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.44  E-value=1e-12  Score=107.32  Aligned_cols=119  Identities=24%  Similarity=0.216  Sum_probs=78.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCC-CCCcHHHHHHHcCCH
Q 020239          117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK-FGNTPLLEAIKCGHD  195 (329)
Q Consensus       117 ~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~~~~  195 (329)
                      ..+|..++..|+.+-+..||+.--++|.+|.+|.|+|..|+..|+.++++.|++.|+|+|.... .+.||||+|+.+|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            3567777777777777777776555677777777777777777777777777777777765422 244444444444443


Q ss_pred             HHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHH
Q 020239          196 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL  266 (329)
Q Consensus       196 ~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll  266 (329)
                                                     ++...|++.|+.+...+.-|+|+-.+|+.-|+.++|..+-
T Consensus        93 -------------------------------dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   93 -------------------------------DVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             -------------------------------hHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence                                           4444444444455556666777878888888877777664

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.43  E-value=1.6e-12  Score=106.21  Aligned_cols=96  Identities=23%  Similarity=0.370  Sum_probs=88.2

Q ss_pred             cCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHH
Q 020239          109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKT-DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  187 (329)
Q Consensus       109 ~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~  187 (329)
                      .+-.|..+.++|..|+..|+.+.++.|++.|+|+|.. +..+.||||+|+.+|+.++.+.|++.|+.+...|..|+|+-.
T Consensus        38 vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaq  117 (396)
T KOG1710|consen   38 VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQ  117 (396)
T ss_pred             hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHH
Confidence            3456778999999999999999999999999999865 578999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHc
Q 020239          188 EAIKCGHDGVTSLLVKE  204 (329)
Q Consensus       188 ~A~~~~~~~~v~~Ll~~  204 (329)
                      +|+.-|+.++|..+-++
T Consensus       118 mAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen  118 MAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHHHhcchHHHHHHhcc
Confidence            99999999999877544

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.38  E-value=1.5e-12  Score=114.51  Aligned_cols=108  Identities=30%  Similarity=0.416  Sum_probs=92.7

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHH
Q 020239          217 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK  296 (329)
Q Consensus       217 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~  296 (329)
                      |.-|+..|.+++|+..+..-.|+...+..|.|+||-|+..|+.+||++|++.|+++|..|..||||||+|+.+++..|++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            44588899999999999888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCccccc--------cc---cchhHHHHHhhh
Q 020239          297 LLEDAKCTQLSEFH--------YC---SQGMIGIAENLL  324 (329)
Q Consensus       297 ~L~~~~~~~~~~~~--------~~---~~~~~~~~~~l~  324 (329)
                      .|.++|+-.+....        .|   +.|..+..+||.
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            99999886554421        12   337777777775

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.03  E-value=3.5e-10  Score=98.55  Aligned_cols=98  Identities=35%  Similarity=0.533  Sum_probs=89.5

Q ss_pred             ccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhc-CCCccccCCCCCcHH
Q 020239          108 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPL  186 (329)
Q Consensus       108 ~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l  186 (329)
                      .....+.++...+.+|++.|++..++.+.-.|.|++.+|.+..|+||.|+..|+.+++|+|++. +.+++.+|.||.|||
T Consensus       498 ~~~~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPl  577 (622)
T KOG0506|consen  498 EGGPRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPL  577 (622)
T ss_pred             ccCcccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcc
Confidence            3334555677789999999999999999999999999999999999999999999999999996 889999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcC
Q 020239          187 LEAIKCGHDGVTSLLVKEG  205 (329)
Q Consensus       187 ~~A~~~~~~~~v~~Ll~~~  205 (329)
                      .-|...++.+++++|-+.-
T Consensus       578 DdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  578 DDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             hHhHhcCcHHHHHHHHHHh
Confidence            9999999999999998763

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.97  E-value=7.5e-10  Score=96.56  Aligned_cols=89  Identities=42%  Similarity=0.658  Sum_probs=84.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHH-CCCCccCCCCCCCcHHHHHHHcCCHH
Q 020239          215 SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKN  293 (329)
Q Consensus       215 ~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~  293 (329)
                      .++++|++.|++..++.+.-.|.|++.+|.+.+|+||.|+..|+.+++++|++ -+.+++.+|.+|+|||+-|..-+|.+
T Consensus       508 i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~  587 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKE  587 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHH
Confidence            46999999999999999999999999999999999999999999999999998 58999999999999999999999999


Q ss_pred             HHHHHHHcCC
Q 020239          294 LIKLLEDAKC  303 (329)
Q Consensus       294 iv~~L~~~~~  303 (329)
                      ++++|.+...
T Consensus       588 v~k~L~~~~~  597 (622)
T KOG0506|consen  588 VVKLLEEAQY  597 (622)
T ss_pred             HHHHHHHHhc
Confidence            9999987644

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.91  E-value=7.3e-09  Score=90.94  Aligned_cols=86  Identities=36%  Similarity=0.400  Sum_probs=67.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHH
Q 020239          216 FLCIAVARGDSDLLKRVLSNGVDPNSRD-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL  294 (329)
Q Consensus       216 ~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~i  294 (329)
                      .||..++.|+.+..-.|+..|+++|..+ ..|.||||.|++.|+.--+++|+-+|+|+...|.+|.||+++|...||-++
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            3777778888888878888888887776 467888888888888888888888888888888888888888888888777


Q ss_pred             HHHHHHc
Q 020239          295 IKLLEDA  301 (329)
Q Consensus       295 v~~L~~~  301 (329)
                      .+-|.+.
T Consensus       216 aeRl~e~  222 (669)
T KOG0818|consen  216 AERLVEI  222 (669)
T ss_pred             HHHHHHH
Confidence            7766553

>PF13606 Ank_3: Ankyrin repeat

Probab=98.88  E-value=2.8e-09  Score=58.05  Aligned_cols=29  Identities=52%  Similarity=0.660  Sum_probs=21.5

Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHCCCCcc
Q 020239          245 DHRTPLHVAASEGLYLMAKLLLEAGASVF  273 (329)
Q Consensus       245 ~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~  273 (329)
                      +|+||||+|++.|+.+++++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            46777777777777777777777777765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.84  E-value=5.7e-09  Score=58.53  Aligned_cols=33  Identities=45%  Similarity=0.623  Sum_probs=27.6

Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHCCCCccCCCC
Q 020239          245 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR  277 (329)
Q Consensus       245 ~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~  277 (329)
                      +|.||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            478888888888888888888888888887763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.81  E-value=3.2e-08  Score=87.04  Aligned_cols=91  Identities=29%  Similarity=0.352  Sum_probs=83.7

Q ss_pred             chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q 020239          113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  191 (329)
Q Consensus       113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  191 (329)
                      ..+....||..++.|++++.-.||..|+++|..+ ..|.||||.|++.|+..-+++|+-+|+|++..|..|.||+.+|-.
T Consensus       130 ~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~  209 (669)
T KOG0818|consen  130 AKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQ  209 (669)
T ss_pred             HHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHh
Confidence            3456678999999999999999999999999886 469999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHH
Q 020239          192 CGHDGVTSLLVK  203 (329)
Q Consensus       192 ~~~~~~v~~Ll~  203 (329)
                      .|+.++.+.|++
T Consensus       210 ~gH~~laeRl~e  221 (669)
T KOG0818|consen  210 GGHHELAERLVE  221 (669)
T ss_pred             cCchHHHHHHHH
Confidence            999888887776

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.80  E-value=2.1e-08  Score=89.58  Aligned_cols=115  Identities=27%  Similarity=0.351  Sum_probs=84.5

Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCchHHHHHHHhCcHHHHH
Q 020239          188 EAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVD--PNSRDYDHRTPLHVAASEGLYLMAK  263 (329)
Q Consensus       188 ~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~iv~  263 (329)
                      .|+..+.+--++-....|.++-.++  ..+.||+|+..|+-++|+|++++|..  .+..|..|.|+||.|+..++-.+.+
T Consensus       872 ~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~  951 (1004)
T KOG0782|consen  872 RAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQ  951 (1004)
T ss_pred             HHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHH
Confidence            3444444433333444444444333  23556666666666666666666542  4567788999999999999999999


Q ss_pred             HHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020239          264 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK  302 (329)
Q Consensus       264 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~  302 (329)
                      +|++.|+..-.+|..|.||-+-|-+.|..|+..||.+..
T Consensus       952 ~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  952 LLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            999999999999999999999999999999999997653

>PF13606 Ank_3: Ankyrin repeat

Probab=98.79  E-value=8e-09  Score=56.24  Aligned_cols=28  Identities=46%  Similarity=0.894  Sum_probs=19.1

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCcc
Q 020239          149 GRSPLHLATSRGYEDITLFLIQKGVDIN  176 (329)
Q Consensus       149 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  176 (329)
                      |+||||+|+..|+.+++++|+++|+++|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5667777777777777777777666655

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.75  E-value=5.8e-09  Score=96.95  Aligned_cols=81  Identities=27%  Similarity=0.374  Sum_probs=61.4

Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC---CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHH
Q 020239          175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH  251 (329)
Q Consensus       175 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~---~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~  251 (329)
                      .|..|..|+++||+|+..+..++++||+++|+++...|   |.||||-|+.+|+++++-.|+.+|.....+|..|.+||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            56778889999999888888888888888888877654   456777777777777777777777777777777777776


Q ss_pred             HHHH
Q 020239          252 VAAS  255 (329)
Q Consensus       252 ~A~~  255 (329)
                      ..++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            6555

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.72  E-value=2.1e-08  Score=56.22  Aligned_cols=32  Identities=50%  Similarity=0.893  Sum_probs=23.4

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhcCCCccccC
Q 020239          148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKD  179 (329)
Q Consensus       148 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~  179 (329)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            36677777777777777777777777777655

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.70  E-value=1.1e-08  Score=95.04  Aligned_cols=82  Identities=27%  Similarity=0.274  Sum_probs=75.6

Q ss_pred             CccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHH
Q 020239          110 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  188 (329)
Q Consensus       110 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  188 (329)
                      +-.|..+.++||.|+..|..++++||+++|++++.+| .+|+||||-|...|+++++-.|+.+|..+...|++|.+||..
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~  125 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQF  125 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHH
Confidence            3356678899999999999999999999999999888 479999999999999999999999999999999999999998


Q ss_pred             HHH
Q 020239          189 AIK  191 (329)
Q Consensus       189 A~~  191 (329)
                      -++
T Consensus       126 ~~r  128 (1267)
T KOG0783|consen  126 LSR  128 (1267)
T ss_pred             Hhh
Confidence            776

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.70  E-value=4.8e-08  Score=86.84  Aligned_cols=86  Identities=37%  Similarity=0.417  Sum_probs=68.9

Q ss_pred             HHHHHHHcCCHHHHHHHH--HCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHH
Q 020239          216 FLCIAVARGDSDLLKRVL--SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN  293 (329)
Q Consensus       216 ~l~~A~~~g~~~~v~~Ll--~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  293 (329)
                      ++|.++...+.+-.+.++  +.+..++..|..|.||||.|+..|+.+.++.|+..|+++..+|+.||+|||.|+..|+.+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHH
Confidence            367777777666555543  335567888888899999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHc
Q 020239          294 LIKLLEDA  301 (329)
Q Consensus       294 iv~~L~~~  301 (329)
                      ++..++.+
T Consensus       103 ~i~~vlr~  110 (560)
T KOG0522|consen  103 IITEVLRH  110 (560)
T ss_pred             HHHHHHHH
Confidence            88766654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.67  E-value=4.7e-08  Score=87.39  Aligned_cols=114  Identities=29%  Similarity=0.335  Sum_probs=70.3

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCC--ccccCCCCCcHHHHHHHcCCHHH
Q 020239          120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD--INIKDKFGNTPLLEAIKCGHDGV  197 (329)
Q Consensus       120 l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~l~~A~~~~~~~~  197 (329)
                      +..|+..+++-.++-...+|.++-.++.+..|.||+|+..|+-++|+|++++|..  ++..+..|.|+||.|+..++-.+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            4555566665555555555655555556666666666666666666666666543  44455556666666666666666


Q ss_pred             HHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHH
Q 020239          198 TSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVL  233 (329)
Q Consensus       198 v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll  233 (329)
                      +++|++.|+.+...+  +.||-.-|-..|+.++.-||-
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle  987 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLE  987 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHh
Confidence            666666666665544  346666666666666666665

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.65  E-value=1.3e-07  Score=84.78  Aligned_cols=104  Identities=28%  Similarity=0.352  Sum_probs=89.1

Q ss_pred             ccccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCC--CC--CCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCC
Q 020239          106 TFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGAD--LN--KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF  181 (329)
Q Consensus       106 ~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~--~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~  181 (329)
                      ...+..++......|..|+...++..+-.||.+|..  +|  ..+.+|.|+||+||..|+..+.++|+-+|+|+..+|..
T Consensus       614 LaPl~~te~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~  693 (749)
T KOG0705|consen  614 LAPLPCTEEPLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAH  693 (749)
T ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccC
Confidence            334445566667789999999999999999998844  22  34567899999999999999999999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 020239          182 GNTPLLEAIKCGHDGVTSLLVKEGASLN  209 (329)
Q Consensus       182 g~t~l~~A~~~~~~~~v~~Ll~~~~~~~  209 (329)
                      |.|+|.||-..|.-+++..|+++|+...
T Consensus       694 g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  694 GRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             CchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            9999999999999999999999987644

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.64  E-value=1.2e-07  Score=85.03  Aligned_cols=90  Identities=32%  Similarity=0.416  Sum_probs=79.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC----CCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCC
Q 020239          216 FLCIAVARGDSDLLKRVLSNGVDP----NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN  291 (329)
Q Consensus       216 ~l~~A~~~g~~~~v~~Ll~~g~~~----~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  291 (329)
                      .|.-|+...+...+-.|+.+|...    ...+.+|+|+||+|+..|++.+.++|+=+|+|+-.+|..|+|+|.||...|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            366688888888888999887532    3456778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCC
Q 020239          292 KNLIKLLEDAKCTQ  305 (329)
Q Consensus       292 ~~iv~~L~~~~~~~  305 (329)
                      .+++..|+++|+.+
T Consensus       707 qec~d~llq~gcp~  720 (749)
T KOG0705|consen  707 QECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHHcCCCc
Confidence            99999999999854

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.62  E-value=2.8e-07  Score=86.66  Aligned_cols=119  Identities=20%  Similarity=0.186  Sum_probs=87.7

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHc
Q 020239          117 ALRFNSAAYHGDLYQLKGLIRAG----ADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  192 (329)
Q Consensus       117 ~~~l~~A~~~g~~~~v~~Ll~~~----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  192 (329)
                      ...+-.|+..|+...|+..++..    .++|..|.-|.++|+.|+.+.+.+++++|++++...       ..+|-+|++.
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~   98 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAV   98 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHH
Confidence            35678899999999999999753    457889999999999999999999999999986544       4588999999


Q ss_pred             CCHHHHHHHHHcCCCCCc------------CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q 020239          193 GHDGVTSLLVKEGASLNV------------DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR  242 (329)
Q Consensus       193 ~~~~~v~~Ll~~~~~~~~------------~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~  242 (329)
                      |..++|+.++.+......            ..+-||+++||..++.|+++.|+++|+.+...
T Consensus        99 ~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   99 GSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            999999999987332211            11235555555555555555555555544443

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.49  E-value=4.3e-07  Score=70.38  Aligned_cols=68  Identities=25%  Similarity=0.146  Sum_probs=63.5

Q ss_pred             CCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCC-CCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239          236 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  303 (329)
Q Consensus       236 g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~  303 (329)
                      +.++|.+|.+|||+++.|+..|+.+.+.||+.+| +.+...|..|.++..+|-+.|..+++..|.++..
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            4578999999999999999999999999999999 8999999999999999999999999999988744

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.43  E-value=6.4e-07  Score=76.58  Aligned_cols=58  Identities=29%  Similarity=0.412  Sum_probs=54.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCc
Q 020239          118 LRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI  175 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~  175 (329)
                      --|+.|++.|+.+.|++|++.|.++|..|....+||.+|+..||.++||+|+++|+-.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            4589999999999999999999999999999999999999999999999999999744

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.42  E-value=7.5e-07  Score=79.42  Aligned_cols=87  Identities=28%  Similarity=0.433  Sum_probs=74.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239          118 LRFNSAAYHGDLYQLKGLIRA--GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  195 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  195 (329)
                      .++|.++...+.+.+...+..  ...++.+|..|.||||+|+.-|+.+.++.|+..|+++..+|..|++|||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            568999999888887776543  455788889999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHc
Q 020239          196 GVTSLLVKE  204 (329)
Q Consensus       196 ~~v~~Ll~~  204 (329)
                      +++.-++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            877666654

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.38  E-value=1.2e-06  Score=67.97  Aligned_cols=69  Identities=19%  Similarity=0.247  Sum_probs=53.3

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239          139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS  207 (329)
Q Consensus       139 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  207 (329)
                      +.++|.+|..|+|+++.|+..|+.+.+.||+++| +.+...|..|.++..+|-+.|..+++..|.+...+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            3567777888888888888888888888888887 77777788888888888888888888777776443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.37  E-value=2.1e-06  Score=80.89  Aligned_cols=120  Identities=24%  Similarity=0.275  Sum_probs=96.4

Q ss_pred             hHHHHHHHcCcHHHHHHHHhcC----CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCH
Q 020239          151 SPLHLATSRGYEDITLFLIQKG----VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS  226 (329)
Q Consensus       151 t~L~~A~~~g~~~~v~~Ll~~g----~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~  226 (329)
                      --.-.|+..|+...|+..++..    .++|..|..|.++++.|+.+.+.++.++|++++...     ..+|.+|+..|..
T Consensus        27 ~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-----gdALL~aI~~~~v  101 (822)
T KOG3609|consen   27 KGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-----GDALLLAIAVGSV  101 (822)
T ss_pred             HHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-----chHHHHHHHHHHH
Confidence            4566799999999999888752    457788889999999999999999999999986655     5678899999999


Q ss_pred             HHHHHHHHCCCCC----------CCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCC
Q 020239          227 DLLKRVLSNGVDP----------NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK  275 (329)
Q Consensus       227 ~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~  275 (329)
                      +.|+.++.+-.+.          ...-..+.|||..|+..++.+|+++|+++|+++..+
T Consensus       102 ~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen  102 PLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            9999999753222          122345678888888888889999998888887543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.35  E-value=3.7e-07  Score=87.94  Aligned_cols=90  Identities=39%  Similarity=0.463  Sum_probs=83.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCC
Q 020239          212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN  291 (329)
Q Consensus       212 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  291 (329)
                      .+.+++|.|+..|..-.++.|+++|+++|..|..|++|+|.+...|+...+..|+++|++.+..+..|.+|+++|....+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             HHHHHHHHHc
Q 020239          292 KNLIKLLEDA  301 (329)
Q Consensus       292 ~~iv~~L~~~  301 (329)
                      .+++-++.-.
T Consensus       735 ~d~~~l~~l~  744 (785)
T KOG0521|consen  735 ADIVLLLRLA  744 (785)
T ss_pred             ccHHHHHhhh
Confidence            7777666443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.29  E-value=2.4e-06  Score=73.17  Aligned_cols=65  Identities=29%  Similarity=0.358  Sum_probs=41.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcCCC--CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchH
Q 020239          185 PLLEAIKCGHDGVTSLLVKEGASLNVDDA--GSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP  249 (329)
Q Consensus       185 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~--~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  249 (329)
                      -|..|++.|..+.|++|++.|.++|..+.  .+||.+|+.+||.+++++|+++|+-...-...|..+
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC  105 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh
Confidence            35566666666666666666666666553  366666666666666666666666555555555554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.93  E-value=9.2e-06  Score=78.52  Aligned_cols=101  Identities=33%  Similarity=0.390  Sum_probs=64.1

Q ss_pred             CHHHHHHHHHcCCCCCCC--CCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020239          128 DLYQLKGLIRAGADLNKT--DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG  205 (329)
Q Consensus       128 ~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  205 (329)
                      +......=...+.++|..  -..|.|+||.|+..|..-++.+|+++|+++|..|..|.+|+|.+...|+...+..|+++|
T Consensus       633 ~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~  712 (785)
T KOG0521|consen  633 CLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRG  712 (785)
T ss_pred             chhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccc
Confidence            334333333444444432  245667777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCCcCC--CCcHHHHHHHcCCHHH
Q 020239          206 ASLNVDD--AGSFLCIAVARGDSDL  228 (329)
Q Consensus       206 ~~~~~~~--~~~~l~~A~~~g~~~~  228 (329)
                      ++.+..+  +..++.+|....+.+.
T Consensus       713 a~~~a~~~~~~~~l~~a~~~~~~d~  737 (785)
T KOG0521|consen  713 ADPNAFDPDGKLPLDIAMEAANADI  737 (785)
T ss_pred             ccccccCccCcchhhHHhhhccccH
Confidence            7666543  4466777665544333

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.90  E-value=1.4e-05  Score=77.14  Aligned_cols=124  Identities=21%  Similarity=0.132  Sum_probs=95.7

Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHc-C--CCCCcCCCCcHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCchHHHH
Q 020239          177 IKDKFGNTPLLEAIKCGHDGVTSLLVKE-G--ASLNVDDAGSFLCIAVARGDSDLLKRVL-SNGVDPNSRDYDHRTPLHV  252 (329)
Q Consensus       177 ~~~~~g~t~l~~A~~~~~~~~v~~Ll~~-~--~~~~~~~~~~~l~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~  252 (329)
                      ...-.|.+.+|.++..+..-+++.+++- +  ......++.+-+|+ |..++.+..-+++ ..|..++.+|..|+||||.
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            3445688999999998888888877773 3  33334566777888 4455555544444 5688899999999999999


Q ss_pred             HHHhCcHHHHHHHHHCCCCc------cCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020239          253 AASEGLYLMAKLLLEAGASV------FTKDRWGNTPLDEGRMCGNKNLIKLLEDA  301 (329)
Q Consensus       253 A~~~~~~~iv~~Ll~~g~~~------~~~~~~g~t~l~~A~~~~~~~iv~~L~~~  301 (329)
                      |+..|+..++..|++.|++.      ...+..|.|+-..|..+|+..+.-+|-+.
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999999887654      33344689999999999999999888765

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.74  E-value=4.8e-05  Score=73.53  Aligned_cols=124  Identities=23%  Similarity=0.247  Sum_probs=92.2

Q ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239          112 HEAELALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  190 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  190 (329)
                      ....+.+.+|.++..+..-.++.+++- |......|.+|.-.+|+|+..|..-.+....-.|..++.+|..|+||||+|+
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa  649 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAA  649 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHh
Confidence            444567889999999999999999885 5555566777888888865554444444444568889999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCc--------CCCCcHHHHHHHcCCHHHHHHHHHC
Q 020239          191 KCGHDGVTSLLVKEGASLNV--------DDAGSFLCIAVARGDSDLLKRVLSN  235 (329)
Q Consensus       191 ~~~~~~~v~~Ll~~~~~~~~--------~~~~~~l~~A~~~g~~~~v~~Ll~~  235 (329)
                      ..|+..++..|++.|++...        .++.|+...|..+|+..+..+|-+.
T Consensus       650 ~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  650 FRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            99999999999977655432        3355666777777777776666654

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.35  E-value=0.002  Score=50.34  Aligned_cols=46  Identities=20%  Similarity=0.237  Sum_probs=34.5

Q ss_pred             HHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 020239          249 PLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  300 (329)
Q Consensus       249 ~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~  300 (329)
                      -|..|+..|....+.-.+++|.+++.      ++|..|+.+++..|+.+++.
T Consensus       146 hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            46667788888888888888777653      57888888888888877753

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.24  E-value=0.00068  Score=60.58  Aligned_cols=71  Identities=31%  Similarity=0.336  Sum_probs=57.4

Q ss_pred             CHHHHHHHHHCCCCCCC------CCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHH
Q 020239          225 DSDLLKRVLSNGVDPNS------RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI  295 (329)
Q Consensus       225 ~~~~v~~Ll~~g~~~~~------~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv  295 (329)
                      ....+++|.+.+.+.|.      .+..-.|+||||+..|.-++|.+||+.|+|+..+|..|.||..++....-.++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkdVk~~F  479 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKDVKSIF  479 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHHHHHHH
Confidence            36678888888766543      355567999999999999999999999999999999999999988743333333

>smart00248 ANK ankyrin repeats

Probab=97.01  E-value=0.0014  Score=34.26  Aligned_cols=26  Identities=54%  Similarity=0.777  Sum_probs=13.6

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHCCCC
Q 020239          246 HRTPLHVAASEGLYLMAKLLLEAGAS  271 (329)
Q Consensus       246 g~t~L~~A~~~~~~~iv~~Ll~~g~~  271 (329)
                      |.||+|+|+..++.++++.|++.|.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            44555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.98  E-value=0.023  Score=44.58  Aligned_cols=136  Identities=17%  Similarity=0.066  Sum_probs=95.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHH
Q 020239          118 LRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  197 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  197 (329)
                      -.+..|+.++.++++++.-+...+-   -...++.+-.||+..+.++|+|+-+.   +...  .-.+-+..|....+.++
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qn---L~i~--~~~~iFdIA~~~kDlsL  119 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQN---LHIY--NPEDIFDIAFAKKDLSL  119 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhc---cCCC--CchhhhhhhhhccchhH
Confidence            4578899999999999887653211   13456788899999999999999554   2221  22355677888887764


Q ss_pred             H----HHHHHcCCCCCcCCCC----cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHH
Q 020239          198 T----SLLVKEGASLNVDDAG----SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE  267 (329)
Q Consensus       198 v----~~Ll~~~~~~~~~~~~----~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  267 (329)
                      .    .++.++...-...+..    .-|..|+..|....+-..+++|.+++.      ++|..|+..++-.++.+++.
T Consensus       120 yslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  120 YSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            2    2233332222111111    237889999999999999999877654      69999999999999998864

These proteins may be involved in promoting survival of infected macrophages [].

>smart00248 ANK ankyrin repeats

Probab=96.90  E-value=0.0019  Score=33.70  Aligned_cols=27  Identities=48%  Similarity=0.892  Sum_probs=16.0

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCc
Q 020239          149 GRSPLHLATSRGYEDITLFLIQKGVDI  175 (329)
Q Consensus       149 g~t~L~~A~~~g~~~~v~~Ll~~g~~~  175 (329)
                      |.||+|+|+..++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            455666666666666666666655443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.67  E-value=0.0035  Score=56.21  Aligned_cols=64  Identities=23%  Similarity=0.288  Sum_probs=53.4

Q ss_pred             CCHHHHHHHHHcCCCCCCC------CCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239          127 GDLYQLKGLIRAGADLNKT------DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  190 (329)
Q Consensus       127 g~~~~v~~Ll~~~~~~~~~------~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  190 (329)
                      .-...+++|.+++.+.|..      +.--.|+||+|+..|.-++|.+|++.|+|+...|..|.||...+.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3466788888887665432      333568999999999999999999999999999999999999876

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.46  E-value=0.00084  Score=64.25  Aligned_cols=74  Identities=30%  Similarity=0.598  Sum_probs=64.6

Q ss_pred             hHhhhhcccccccchhhhchhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239           18 RYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG   91 (329)
Q Consensus        18 ~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (329)
                      ++|-..=.+.-..|..+++.+.++.+++|.+++++++.++..+++.++++|++.++.+|...+.+||++++.+.
T Consensus       399 ~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le  472 (727)
T KOG0498|consen  399 ELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLE  472 (727)
T ss_pred             HHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEE
Confidence            33433333333679999999999999999999999999999999999999999999999999999999998874

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.18  E-value=0.038  Score=44.76  Aligned_cols=90  Identities=19%  Similarity=0.231  Sum_probs=58.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHC----CCCCCCCCCCCchHHHHHHH--hCcHHHHHHHHHCC-CCccC---CCCCCCcHHH
Q 020239          215 SFLCIAVARGDSDLLKRVLSN----GVDPNSRDYDHRTPLHVAAS--EGLYLMAKLLLEAG-ASVFT---KDRWGNTPLD  284 (329)
Q Consensus       215 ~~l~~A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~--~~~~~iv~~Ll~~g-~~~~~---~~~~g~t~l~  284 (329)
                      +++-+++.++..+++-+|+.+    ..|+-... .+.--+.|+.+  ..+..+.++.+++| +++|.   +-+.|.|-|+
T Consensus       181 ~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~-~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLD  259 (284)
T PF06128_consen  181 QAMWLSIGNAKEDVALYLLSKFNFTKQDVASME-KELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLD  259 (284)
T ss_pred             HHHHHHhcccHHHHHHHHHhhcceecchhhhcC-cchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHH
Confidence            445555556666666666643    11111110 12223444443  33678999999998 45553   4567999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCC
Q 020239          285 EGRMCGNKNLIKLLEDAKCTQ  305 (329)
Q Consensus       285 ~A~~~~~~~iv~~L~~~~~~~  305 (329)
                      -|.++++.+++.+|+++|+..
T Consensus       260 NA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  260 NAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             hHHhcCcHHHHHHHHHcCccc
Confidence            999999999999999999854

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.93  E-value=0.084  Score=42.85  Aligned_cols=120  Identities=22%  Similarity=0.229  Sum_probs=79.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHH
Q 020239          119 RFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT  198 (329)
Q Consensus       119 ~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v  198 (329)
                      .|..|+...+.+-+.-+....       +.-.+++.+|..++..+++-+|+++- +....|        .|.......-+
T Consensus       156 sledAV~AsN~~~i~~~VtdK-------kdA~~Am~~si~~~K~dva~~lls~f-~ft~~d--------v~~~~~~~ydi  219 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK-------KDAHQAMWLSIGNAKEDVALYLLSKF-NFTKQD--------VASMEKELYDI  219 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch-------HHHHHHHHHHhcccHHHHHHHHHhhc-ceecch--------hhhcCcchhhH
Confidence            377888888888877776532       22347888888888889999998761 122222        11112233345


Q ss_pred             HHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCC---CCCCCchHHHHHHHhCcHHHHHHHHHCCCC
Q 020239          199 SLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNG-VDPNS---RDYDHRTPLHVAASEGLYLMAKLLLEAGAS  271 (329)
Q Consensus       199 ~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~---~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~  271 (329)
                      +|++...                 .-+..++++++..| +++|.   +-..|.|-|.-|+..++.+++..|+++|+-
T Consensus       220 eY~LS~h-----------------~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  220 EYLLSEH-----------------SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHHHhhc-----------------CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            5555431                 12346777777776 34543   345689999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.22  E-value=0.12  Score=34.83  Aligned_cols=47  Identities=15%  Similarity=0.195  Sum_probs=34.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhc
Q 020239          118 LRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK  171 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  171 (329)
                      ..+..|+..|+.|+++..++.+ .++      ...+..|+...+.++++||+++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            5678888888888888887654 111      3568888888888888888775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.69  E-value=0.12  Score=34.75  Aligned_cols=44  Identities=23%  Similarity=0.314  Sum_probs=20.4

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHH
Q 020239          217 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE  267 (329)
Q Consensus       217 l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  267 (329)
                      +..|+..|+.|+++..++.+ .++      ...+..|+..-+.++++||++
T Consensus        10 l~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~   53 (76)
T PF11929_consen   10 LEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIE   53 (76)
T ss_pred             HHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHH
Confidence            44555555555555555432 110      224555555555555555544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	329
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-29
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-28
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-26
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-24
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-25
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-23
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-21
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-21
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		8e-21
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-15
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-20
1uoh_A	226	Human Gankyrin Length = 226		2e-19
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		3e-19
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-19
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		7e-19
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		8e-19
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		9e-19
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-18
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-17
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-16
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		9e-08
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-17
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-17
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		4e-17
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		6e-17
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		9e-17
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-16
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-16
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-16
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-07
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		4e-16
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-05
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		5e-16
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-16
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		5e-16
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-05
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		5e-16
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		6e-16
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-15
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-14
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-08
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-14
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-10
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		3e-14
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		9e-14
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-10
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-13
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-13
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		2e-12
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		3e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-12
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-09
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		1e-11
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		1e-11
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-11
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		2e-11
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		3e-11
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-11
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		5e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		6e-11
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		7e-11
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		7e-11
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-10
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-10
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		6e-10
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		3e-10
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		4e-10
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		4e-10
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-10
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-10
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		9e-10
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		9e-10
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		1e-09
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		5e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-09
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		7e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-09
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		6e-09
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		6e-09
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-06
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		7e-09
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		3e-08
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		7e-09
3so8_A	162	Crystal Structure Of Ankra Length = 162		7e-09
3so8_A	162	Crystal Structure Of Ankra Length = 162		3e-08
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		8e-09
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		3e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-08
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		4e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-08
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-08
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-06
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		2e-08
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		5e-08
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-08
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		2e-08
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		6e-08
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-08
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-08
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-06
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		9e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		9e-08
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		9e-08
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		5e-07
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		7e-07
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		7e-07
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		8e-07
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-06
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-06
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		9e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		3e-06
1ycs_B	239	P53-53bp2 Complex Length = 239		6e-06
1ycs_B	239	P53-53bp2 Complex Length = 239		6e-06
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		8e-06
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		8e-06
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		1e-05
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-05
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		2e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		3e-05
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		4e-05
1d9s_A	136	Tumor Suppressor P15(Ink4b) Structure By Comparativ		1e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		1e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		3e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		2e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		5e-04
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		2e-04
1bi7_B	156	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-04
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		3e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		8e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		8e-04
3u11_A	210	Tetramerization Dynamics Of The C-Terminus Underlie		8e-04

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score =  125 bits (315), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 96/186 (51%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           +EL  R   AA +G+  ++K LI  GAD+N +D DGR+PLH A   G++++   LI KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
           D+N KD  G TPL  A + GH  V  LL+                               
Sbjct: 62  DVNAKDSDGRTPLHHAAENGHKEVVKLLI------------------------------- 90
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
           S G D N++D D RTPLH AA  G   + KLL+  GA V T D  G TPLD  R  GN+ 
Sbjct: 91  SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 294 LIKLLE 299
           ++KLLE
Sbjct: 151 VVKLLE 156

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score =  122 bits (305), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/186 (39%), Positives = 94/186 (50%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           +EL  R   AA +G+  ++K L+  GAD N +D DGR+PLH A   G+++I   L+ KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
           D N KD  G TPL  A + GH  +  LL                               L
Sbjct: 62  DPNAKDSDGRTPLHYAAENGHKEIVKLL-------------------------------L 90
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
           S G DPN++D D RTPLH AA  G   + KLLL  GA   T D  G TPLD  R  GN+ 
Sbjct: 91  SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEE 150
Query: 294 LIKLLE 299
           ++KLLE
Sbjct: 151 IVKLLE 156

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/159 (40%), Positives = 92/159 (57%), Gaps = 2/159 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           +EL  R   AA +G+  ++K LI  GAD+N +D DGR+PLH A   G+++I   LI KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKR 231
           D+N KD  G TPL  A K GH  +  LL+ +GA +N  D+   + L  A   G  +++K 
Sbjct: 62  DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKL 121
Query: 232 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           ++S G D N+ D D RTPL +A   G   + KLL + G 
Sbjct: 122 LISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQGG 160

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG- 214
           A   G +D    LI+ G D+N  D  G TPL  A K GH  +  LL+ +GA +N  D+  
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 215 -SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
            + L  A   G  +++K ++S G D N++D D RTPLH AA EG   + KLL+  GA V 
Sbjct: 71  RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 130
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLLE 299
           T D  G TPLD  R  GN+ ++KLLE
Sbjct: 131 TSDSDGRTPLDLAREHGNEEIVKLLE 156

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 93/159 (58%), Gaps = 2/159 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           +EL  R   AA +G+  ++K L+  GAD+N +D DG++PLHLA   G++++   L+ +G 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKR 231
           D N KD  G TPL  A + GH  V  LL+ +GA  N  D+   + L +A   G  +++K 
Sbjct: 62  DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 121
Query: 232 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           +LS G DPN+ D D RTPL +A   G   + KLL + G 
Sbjct: 122 LLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG 160

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG- 214
           A   G +D    L++ G D+N  D  G TPL  A + GH  V  LL+ +GA  N  D+  
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 215 -SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
            + L +A   G  +++K +LS G DPN++D D +TPLH+AA  G   + KLLL  GA   
Sbjct: 71  KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLLE 299
           T D  G TPLD  R  GN+ ++KLLE
Sbjct: 131 TSDSDGRTPLDLAREHGNEEVVKLLE 156

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 31/187 (16%)
Query: 115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 174
           +L  +   AA  G   +++ L+  GAD+N  D DG +PLHLA   G+ +I   L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 234
           +N KDK G TPL  A + GH  +  +L+K GA                            
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---------------------------- 92
Query: 235 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 294
              D N++D D  TPLH+AA EG   + ++LL+AGA V  +D++G TP D     GN+++
Sbjct: 93  ---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDI 149
Query: 295 IKLLEDA 301
            ++L+ A
Sbjct: 150 AEVLQKA 156

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 97/187 (51%), Gaps = 31/187 (16%)
Query: 115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 174
           +L  +   AA  G   +++ L+  GAD+N  D DG +PLHLA   G+ +I   L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 234
           +N KDK G TPL  A + GH  +  +L+K GA                            
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA---------------------------- 92
Query: 235 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 294
              D N++D D  TPLH+AA EG   + ++LL+AGA V  +D++G TP D     G++++
Sbjct: 93  ---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDI 149
Query: 295 IKLLEDA 301
            ++L+ A
Sbjct: 150 AEVLQKA 156

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 207
           +GR+PLHLA   G+ ++   L++ G D+N KDK G TPL  A + GH  V  LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 208 LNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265
           +N  D    + L +A   G  +++K +L  G D N++D + RTPLH+AA  G   + KLL
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Query: 266 LEAGA 270
           LEAGA
Sbjct: 121 LEAGA 125

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDP 239
           G TPL  A + GH  V  LL++ GA +N  D    + L +A   G  +++K +L  G D 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
           N++D + RTPLH+AA  G   + KLLLEAGA V  KD+ G TPL      G+  ++KLL 
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 300 DA 301
           +A
Sbjct: 122 EA 123

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           ++L  +   AA  G   +++ L+  GAD+N  D DG +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
           D+N KDK G TPL  A + GH  +  +L+K GA                           
Sbjct: 72  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA--------------------------- 104
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
               D N++D D  TPLH+AA EG   + ++LL+AGA V  +D++G T  D     GN++
Sbjct: 105 ----DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIKLLE 299
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 124 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AY G L +LK  I A   L  +TD D R+ LH A S G+ +I  FL+Q GV +N KD  G
Sbjct: 14  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPN 240
            +PL  A   G D +   L+ +GA +N V+  G + L  A ++   ++   +L  G +P+
Sbjct: 74  WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 288
           ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 185

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 7/172 (4%)
Query: 124 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AY G L +LK  I A   L  +TD D R+ LH A S G+ +I  FL+Q GV +N KD  G
Sbjct: 15  AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 74
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPN 240
            +PL  A   G D +   L+ +GA +N V+  G + L  A ++   ++   +L  G +P+
Sbjct: 75  WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRM 288
           ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 186

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 95/186 (51%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           ++L  +   AA  G   +++ L+  GAD+N TD+ G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
           D+N  D +G TPL  A   GH  +  +L+K GA                           
Sbjct: 72  DVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA--------------------------- 104
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
               D N++DY+  TPLH+AA +G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 105 ----DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIKLLE 299
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 97/179 (54%), Gaps = 7/179 (3%)
Query: 124 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AY G L +LK  I A   L  +TD D R+ LH A S G+ +I  FL+Q GV +N KD  G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPN 240
            +PL  A   G D +   L+ +GA +N V+  G + L  A ++   ++   +L  G +P+
Sbjct: 74  WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRMCGNKNLI 295
           ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+   K L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/186 (32%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           ++L  +   AA  G   +++ L+  GAD+N TD DG +PLHLA S G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
           D+N  D  G TPL  A   GH  +  +L+K GA                           
Sbjct: 72  DVNASDLTGITPLHLAAATGHLEIVEVLLKHGA--------------------------- 104
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
               D N+ D D  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 105 ----DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIKLLE 299
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 90.9 bits (224), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 97/179 (54%), Gaps = 7/179 (3%)
Query: 124 AYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AY G L +LK  I A   L  +TD D R+ LH A S G+ +I  FL+Q GV +N KD  G
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG 73
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPN 240
            +PL  A   G D +   L+ +GA +N V+  G + L  A ++   ++   +L  G +P+
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL----DEGRMCGNKNLI 295
           ++D+   T +H AA++G   M  +LL   AS   +D  GNTPL    DE R+   K L+
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           ++L  +   AA  G   +++ L+  GAD+N  D  G++PLHLA  +G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
           D+N  DK G+TPL  A   GH  +  +L+K GA +N  D   F                 
Sbjct: 72  DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGF----------------- 114
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
                         TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIKLLE 299
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 87/154 (56%), Gaps = 2/154 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           ++L  +   AA  G   +++ L+  GAD+N  D+ G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKR 231
           D+N KD  G TPL  A + GH  +  +L+K GA +N  D+  F  L +A  RG  ++++ 
Sbjct: 72  DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEV 131
Query: 232 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265
           +L NG D N++D   +T   ++   G   +A++L
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 215
           A   G +D    L+  G D+N +D  G TPL  A   GH  +  +L+K GA +N  D+  
Sbjct: 21  AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 216 F--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
              L +A  RG  ++++ +L NG D N+ D    TPLH+AA  G   + ++LL+ GA V 
Sbjct: 81  VTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLLE 299
            +D++G T  D     GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
           D G  L  A   G  D ++ +++NG D N+RD+   TPLH+AA  G   + ++LL+ GA 
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIK-LLEDAKCTQLSEFH 310
           V  KD  G TPL      G+  +++ LL++      S+ H
Sbjct: 73  VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSH 112

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 2/146 (1%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 215
           A   G +D    L+  G D+N  D  G TPL  A   GH  +  +L+K GA +N DD+  
Sbjct: 21  AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 216 F--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
              L +A  RG  ++++ +L NG D N+ D++  TPLH+AA+ G   + ++LL+ GA V 
Sbjct: 81  VTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN 140
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLLE 299
            +D++G T  D     GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 90/186 (48%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           ++L  +   AA  G   +++ L+  GAD+N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
           D++  D FG TPL  A   GH  +  +L+K                              
Sbjct: 72  DVDASDVFGYTPLHLAAYWGHLEIVEVLLK------------------------------ 101
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
            NG D N+ D D  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 102 -NGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIKLLE 299
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 85.5 bits (210), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 215
           A   G +D    L+  G D+N  D FG TPL   +  GH  +  +L+K  A +N  D   
Sbjct: 21  AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 216 F--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
           +  L +A  RG  ++++ +L  G D N+ DY   TPLH+AA +G   + ++LL+ GA V 
Sbjct: 81  WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLLE 299
            +D++G T  D     GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/146 (35%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG 214
           A   G +D    L+  G D+N +D +G+TPL  A + GH  +  +L+K GA +N +D +G
Sbjct: 21  AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 215 SF-LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
           S  L +A  RG  ++++ +L  G D N+ D    TPLH+AA  G   + ++LL+ GA V 
Sbjct: 81  STPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLLE 299
            +D++G T  D     GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           ++L  +   AA  G   +++ L+  GAD+N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
           D+N  D  G+TPL  A   GH  +  +L+K                              
Sbjct: 72  DVNAYDTLGSTPLHLAAHFGHLEIVEVLLK------------------------------ 101
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
            NG D N++D +  TPLH+AA+ G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 102 -NGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNED 160
Query: 294 LIKLLE 299
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 3/164 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKF 181
           AA +  L  +K LI+AGA ++  D +G + LHLA  +G+ ++  +L+  G +D+N +D  
Sbjct: 51  AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110
Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVDP 239
           G TP++ A +  H  +  LL+ +G+ +N+ D    +C+  A   G  D+ + +L+   D 
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170
Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
           ++ +    +PLH+AA E  Y    L L   + V  K++ G TPL
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           ++L  +   AA  G   +++ L+  GAD+N TD  G +PLHLA + G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
           D+N  D  G+TPL  A   GH  +  +L+K GA +N  D           GD        
Sbjct: 72  DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVD---------TWGD-------- 114
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
                         TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIKLLE 299
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 87/183 (47%), Gaps = 31/183 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           ++L  +   AA  G   +++ LI  GAD+N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
           D++  D +G TPL  A   GH  +  +L+K GA                           
Sbjct: 72  DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGA--------------------------- 104
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
               D N+ D    TPLH+AA EG   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 105 ----DVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIK 296
           L K
Sbjct: 161 LAK 163

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 48/87 (55%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
           D G  L  A   G  D ++ +++NG D N+ D    TPLH+AA  G   + ++LL+ GA 
Sbjct: 13  DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           V   D +G TPL    M G+  ++++L
Sbjct: 73  VDAADVYGFTPLHLAAMTGHLEIVEVL 99

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 82/178 (46%), Gaps = 34/178 (19%)
Query: 109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR--SPLHLATSRGYEDITL 166
           +G   +E   +   AA  GD+  +K L    + +N  D +GR  +PLH A       +  
Sbjct: 3   MGSGNSEADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 61
Query: 167 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 226
           +L+Q G D++ KDK G  PL  A   GH  V  LLVK GA +NV D   F          
Sbjct: 62  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 111
Query: 227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 284
                                TPLH AA++G Y + KLLL+ GA    K+R GNTPLD
Sbjct: 112 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 148

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 228 LLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR 287
           +++ +L +G D +++D     PLH A S G Y +A+LL++ GA V   D W  TPL E  
Sbjct: 59  VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 118
Query: 288 MCGNKNLIKLL 298
             G   + KLL
Sbjct: 119 AKGKYEICKLL 129

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 92/186 (49%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           ++L  +   AA  G   +++ L+  GAD+N TD  G +PLHLA + G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
           D+N  D  G+TPL  A   GH  +  +L+K GA +N  D           GD        
Sbjct: 72  DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVD---------TWGD-------- 114
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
                         TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 115 --------------TPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIKLLE 299
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 83/178 (46%), Gaps = 36/178 (20%)
Query: 109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR--SPLHLATSRGYEDITL 166
           +G  EA+  L    AA  GD+  +K L    + +N  D +GR  +PLH A       +  
Sbjct: 3   MGNSEADRQLL--EAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 59
Query: 167 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 226
           +L+Q G D++ KDK G  PL  A   GH  V  LLVK GA +NV D   F          
Sbjct: 60  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 109
Query: 227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 284
                                TPLH AA++G Y + KLLL+ GA    K+R GNTPLD
Sbjct: 110 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 146

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 228 LLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR 287
           +++ +L +G D +++D     PLH A S G Y +A+LL++ GA V   D W  TPL E  
Sbjct: 57  VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116
Query: 288 MCGNKNLIKLL 298
             G   + KLL
Sbjct: 117 AKGKYEICKLL 127

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 83/178 (46%), Gaps = 36/178 (20%)
Query: 109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR--SPLHLATSRGYEDITL 166
           +G  EA+  L    AA  GD+  +K L    + +N  D +GR  +PLH A       +  
Sbjct: 7   LGNSEADRQLL--EAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVE 63
Query: 167 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 226
           +L+Q G D++ KDK G  PL  A   GH  V  LLVK GA +NV D   F          
Sbjct: 64  YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF---------- 113
Query: 227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 284
                                TPLH AA++G Y + KLLL+ GA    K+R GNTPLD
Sbjct: 114 ---------------------TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 150

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 7/129 (5%)
Query: 175 INIKDKFGNTPLLEAIKCGH-DGVTSLLVKEGASLNVDD----AGSFLCIAVARGDSDLL 229
           I++ +   +  LLEA K G  + V  L   +  S+N  D      + L  A       ++
Sbjct: 5   ISLGNSEADRQLLEAAKAGDVETVKKLCTVQ--SVNCRDIEGRQSTPLHFAAGYNRVSVV 62
Query: 230 KRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 289
           + +L +G D +++D     PLH A S G Y +A+LL++ GA V   D W  TPL E    
Sbjct: 63  EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK 122
Query: 290 GNKNLIKLL 298
           G   + KLL
Sbjct: 123 GKYEICKLL 131

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           ++L  +   AA  G   +++ L+  GAD+N  D  G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
           D+N  D  G TPL  A   GH  +  +L+K                              
Sbjct: 72  DVNAVDHAGMTPLRLAALFGHLEIVEVLLK------------------------------ 101
Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
            NG D N+ D +  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++
Sbjct: 102 -NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED 160
Query: 294 LIKLLE 299
           L ++L+
Sbjct: 161 LAEILQ 166

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 81.3 bits (199), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 31/185 (16%)
Query: 115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 174
           +L  +   AA  G   +++ L+  GAD N  D+ GR+PLH+A + G+ +I   L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 234
           +N  D  G TPL  A   GH  +  +L+K GA +N  DA                     
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGI------------------ 102
Query: 235 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 294
                        TPL++AA  G   + ++LL+ GA V  +D++G T  D     GN++L
Sbjct: 103 -------------TPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDIGNEDL 149
Query: 295 IKLLE 299
            ++L+
Sbjct: 150 AEILQ 154

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 79/146 (54%), Gaps = 2/146 (1%)
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 215
           A   G +D    L+  G D+N  D  G+TPL  A   GH  +  +L+K GA +N  D   
Sbjct: 21  AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 216 F--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF 273
           +  L +A   G  ++++ +L  G D N++D    TPLH+AA  G   + ++LL+ GA V 
Sbjct: 81  WTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 274 TKDRWGNTPLDEGRMCGNKNLIKLLE 299
            +D++G T  D     GN++L ++L+
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/178 (30%), Positives = 86/178 (48%), Gaps = 2/178 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A++ G L  +K L++ GA  N ++    +PLH+A   G+ ++  +L+Q    +N K K  
Sbjct: 21  ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDPN 240
            TPL  A + GH  +  LL++  A+ N+      + L IA   G  + +  +L       
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140
Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
                  TPLHVAA  G   +A+LLLE  A      + G TPL       N +++KLL
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 10/151 (6%)
Query: 184 TPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDPNS 241
           TPL  A   GH  +   L++ GAS NV +    + L +A   G +++ K +L N    N+
Sbjct: 16  TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301
           +  D +TPLH AA  G   M KLLLE  A+       G+TPL      G+   +  L + 
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Query: 302 KCTQ-------LSEFHYCSQ-GMIGIAENLL 324
           + +Q        +  H  ++ G + +AE LL
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLL 166

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/116 (39%), Positives = 73/116 (62%), Gaps = 2/116 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
           LLEA + G D    +L+  GA +N +DDAG + L +A  RG  ++++ +L +G D N+RD
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
              RTPLH+AA+ G   + ++LLE GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 54/84 (64%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA +G L  +K L+ AGAD+N  D +GR+PLHLA   G+ ++   L++ G D+N KDK G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGA 206
            TPL  A + GH  V  LL++ GA
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 31/123 (25%)
Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 207
           +GR+PLHLA   G+ ++   L++ G D+N KDK G TPL  A + GH  V  LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59
Query: 208 LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 267
                                         D N++D + RTPLH+AA  G   + KLLLE
Sbjct: 60  ------------------------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Query: 268 AGA 270
           AGA
Sbjct: 90  AGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 52/85 (61%)
Query: 217 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 276
           L +A   G  +++K +L  G D N++D + RTPLH+AA  G   + KLLLEAGA V  KD
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 277 RWGNTPLDEGRMCGNKNLIKLLEDA 301
           + G TPL      G+  ++KLL +A
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEA 90

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 174
           +L  +   AA  G   +++ L+  GAD+N TD +G +PLHLA + G  +I   L++ G D
Sbjct: 5   DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRV 232
           +N  D  G TPL  A   GH  +  +L+K GA +N  D   +  L +A   G  ++++ +
Sbjct: 65  VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Query: 233 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265
           L +G D N++D    T   ++ ++G   +A++L
Sbjct: 125 LKHGADVNAQDALGLTAFDISINQGQEDLAEIL 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
           LLEA   G D    +L+  GA +N  DD G + L +A A G  ++++ +L NG D N+ D
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
               TPLH+AA +G   + ++LL+ GA V   DR G TPL    + G   ++++L
Sbjct: 70  SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 55/96 (57%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
            ++AA +G   ++K L+  GAD+N    DG +PLHLA   G+ +I   L+ KG D+N + 
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72
Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 215
           K GNTP   A K GH  +  LL  +GA +N    GS
Sbjct: 73  KDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGS 108

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 32/134 (23%)
Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 207
           DG +PLH A   G+ +    L+ KG D+N + K GNTPL  A K GH             
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGH------------- 54
Query: 208 LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 267
                             ++++K +L+ G D N+R  D  TP H+A   G + + KLL  
Sbjct: 55  ------------------AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDA 96
Query: 268 AGASVFTKDRWGNT 281
            GA V  +  WG++
Sbjct: 97  KGADVNARS-WGSS 109

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
           D  + L  A   G ++ +K++LS G D N+R  D  TPLH+AA  G   + KLLL  GA 
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQ 314
           V  + + GNTP    +  G+  ++KLL DAK   ++   + S 
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLL-DAKGADVNARSWGSS 109

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
           LLEA + G D    +L+  GA +N +DDAG + L +A  RG  ++++ +L +G D N+ D
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
              RTPLH+AA+ G   + ++LLE GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 72/116 (62%), Gaps = 2/116 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
           LLEA + G D    +L+  GA +N +DDAG + L +A  RG  ++++ +L +G D N+ D
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
              RTPLH+AA+ G   + ++LLE GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 3/181 (1%)
Query: 133 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 191
           K L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ +   G TPL+ A +
Sbjct: 42  KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 101
Query: 192 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 249
              +G+   L+   A +N VDD G S L  A A  + D    +L NG + + ++    TP
Sbjct: 102 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 161
Query: 250 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 309
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL++    +  + 
Sbjct: 162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221
Query: 310 H 310
           H
Sbjct: 222 H 222

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 3/181 (1%)
Query: 133 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 191
           K L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ +   G TPL+ A +
Sbjct: 75  KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 134
Query: 192 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 249
              +G+   L+   A +N VDD G S L  A A  + D    +L NG + + ++    TP
Sbjct: 135 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 194
Query: 250 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF 309
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL++    +  + 
Sbjct: 195 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 254
Query: 310 H 310
           H
Sbjct: 255 H 255

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           ++L  +   AA  G   +++ L+  GAD+N  D DG +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 228
           D+N +D FG TPL  A   GH  +  +L+K GA +N  D    +   I++  G+ DL
Sbjct: 72  DVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 65/116 (56%), Gaps = 2/116 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
           LLEA + G D    +L+  GA +N   +D  + L +A   G  ++++ +L  G D N+ D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
               TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 3/170 (1%)
Query: 133 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 191
           K L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ +   G TPL+ A +
Sbjct: 74  KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133
Query: 192 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 249
              +G+   L+   A +N VDD G S L  A A  + D    +L NG + + ++    TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 250 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL+
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 88/170 (51%), Gaps = 3/170 (1%)
Query: 133 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIK 191
           K L+ A AD N  D  GR+PLH A S   + +   LI+ +  D++ +   G TPL+ A +
Sbjct: 74  KRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 133
Query: 192 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 249
              +G+   L+   A +N VDD G S L  A A  + D    +L NG + + ++    TP
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP 193
Query: 250 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL+
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRD 243
           LLEA + G D    +L+  GA +N  D      L +A A G  ++++ +L NG D N+ D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
               TPLH+AA  G   +A++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 50/92 (54%)
Query: 119 RFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
            F  A  +GDL ++K  +  G D+N+T   GR PLH A   G  +I  FL+ KG DIN  
Sbjct: 5   EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 64
Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
           DK   TPLL A+  GH     LL+ +GA   V
Sbjct: 65  DKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 50/92 (54%)
Query: 119 RFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
            F  A  +GDL ++K  +  G D+N+T   GR PLH A   G  +I  FL+ KG DIN  
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP 69
Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
           DK   TPLL A+  GH     LL+ +GA   V
Sbjct: 70  DKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 89/213 (41%), Gaps = 29/213 (13%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
           F +A   GD  ++  L+  GAD+N  + DG + LH A      D+  FL++ G +IN  D
Sbjct: 44  FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103
Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGA---SLNVDDAGSFLCIAVARGDSDLLKRVLSNG 236
             G  PL  A  CG+  +   L+ +GA   ++N +             +  L   V   G
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163
Query: 237 VD-PNSRDYDHR-------------------------TPLHVAASEGLYLMAKLLLEAGA 270
           VD   +R  + R                         T LHVAA++G   + KLL++A  
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223
Query: 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC 303
            V  KD  G TPL      G +   ++L +  C
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLC 256

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
           D G+    A + GD++ + R+L  G D N  + D  T LH A  +    M K L+E GA+
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 272 VFTKDRWGNTPLDEGRMCG 290
           +   D  G  PL     CG
Sbjct: 99  INQPDNEGWIPLHAAASCG 117

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 55/90 (61%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
           D G  L  A   G  D ++ +++NG D N++D D  TPLH+AA EG   + ++LL+AGA 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301
           V  +D++G T  D     GN++L ++L+ A
Sbjct: 61  VNAQDKFGKTAFDISIDNGNEDLAEILQKA 90

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 2/162 (1%)
Query: 143 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 202
           N  D   R+PL +A   G E+    L++    +  KD  G+T L+ A+K    G+   L+
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL 88
Query: 203 KEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL 260
            +G+++N  D    + L  ++  G S++   +L +G + N R+ +  TPL VA+  G   
Sbjct: 89  SKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE 148
Query: 261 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 302
           + K LLE GA +  +D  G T     R+ G + +IK+  + +
Sbjct: 149 IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 3/171 (1%)
Query: 133 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDI-TLFLIQKGVDINIKDKFGNTPLLEAIK 191
           K L+ A AD    D  GR+PLH A S   + +  + L  +  D++ +   G TPL+ A +
Sbjct: 39  KRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAAR 98
Query: 192 CGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 249
              +G+   L+   A +N VDD G S L  A A  + D    +L NG + + ++    TP
Sbjct: 99  LALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETP 158
Query: 250 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 300
           L +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL++
Sbjct: 159 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 209

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 2/116 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
           LLEA + G D    +L+  GA +N +D    + L +A      ++++ +L +G D N+ D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
            D  TPLH+AA  G   + ++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           ++L  +   AA  G   +++ L   GAD+N  DY G +PLHLA   G+ +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 228
           D+N     G TPL  A    H  +  +L+K GA +N  D    +   I++  G+ DL
Sbjct: 72  DVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
           LLEA + G D    +L   GA +N +D    + L +A   G  ++++ +L NG D N+  
Sbjct: 18  LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
              RTPLH+AA      + ++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 3/169 (1%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDI-TLFLIQKGVDINIKDKFGNTPLLEAIKCG 193
           L+ AGAD N  D  GR+PLH A +     +  + L  +  ++N +   G TPL+ A +  
Sbjct: 70  LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 194 HDGVTSLLVKEGASLNV-DDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH 251
            +G+   L+   A +N  D++G + L  A A  +++ +  +L +  + +++D    TPL 
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF 189
Query: 252 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 300
           +AA EG Y  +K LL+  A+    D     P D      + ++++LL++
Sbjct: 190 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLDE 238

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 2/182 (1%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
            + AA HG    L+ LI  G  +N    D  SPLH A   G+      L++ G  +N   
Sbjct: 7   MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 66
Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCIAVARGDSDLLKRVLSNGVD 238
              +TPL  A   G     +LL++ GAS+  + D  S +  A  RG  + +  +++ G +
Sbjct: 67  ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 126
Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            + +     TPL++A         K LLE+GA V  + +  ++PL       ++ L  LL
Sbjct: 127 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVARTASEELACLL 185
Query: 299 ED 300
            D
Sbjct: 186 MD 187

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 16/197 (8%)
Query: 112 HEAELALRFNSAAYHGDLYQLKGLI--RAGADLNKTDYDGRSPLHLATSRGYEDITLFLI 169
           H A +  R +   Y    Y  KG I  + G DLN T      PLH AT +G+  + + L+
Sbjct: 47  HWAAINNRIDLVKY----YISKGAIVDQLGGDLNST------PLHWATRQGHLSMVVQLM 96
Query: 170 QKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDS- 226
           + G D ++ D  G + +  A + GH  + + L+ +G  +++ D      L  A  R  S 
Sbjct: 97  KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV 156
Query: 227 DLLKRVLSNGVDPNSRDYDHR-TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 285
           D  + +L+  V  N  D  H+ T LH A   G   +  LLLEAGA+V  ++  G + LD 
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216
Query: 286 GRMCGNKNLIKLLEDAK 302
            +   N  +I  L++A+
Sbjct: 217 AKQRKNVWMINHLQEAR 233

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
           D G  L  A   G  D ++ +++NG D  ++D +  TPLH+AA  G   + KLLLEAGA 
Sbjct: 23  DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
           V  +D++G T  D     GN++L ++L+
Sbjct: 83  VXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 52/88 (59%)
Query: 212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
           D G  L  A   G  D ++ +++NG D  ++D +  TPLH+AA  G   + KLLLEAGA 
Sbjct: 5   DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
           V  +D++G T  D     GN++L ++L+
Sbjct: 65  VNAQDKFGKTAFDISIDNGNEDLAEILQ 92

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 4/171 (2%)
Query: 131 QLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 190
           +L  +  +G  +N T  DG SPLH+A   G  D+   L++ G +   ++     PL  A 
Sbjct: 68  RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLAC 127
Query: 191 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRT 248
           + GH  V   L+   A  N  D    + L  A + G  +L+  +L +G   N+ +    T
Sbjct: 128 QQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNT 187
Query: 249 PLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
            LH A  E    + +LLL  GASV   ++   T +D      N  +++LL+
Sbjct: 188 ALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ--NSKIMELLQ 236

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 32/185 (17%)
Query: 115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 174
           +L  +   AA  G   +++ L+  GA    TD+ G SPLHLA   G+   T  L++ GV 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 234
            + + K   TPL  A   GH  +  +L+K GA +N                 D+LK    
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA---------------KDMLK---- 100
Query: 235 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 294
                        T LH A       + +LL++ GA V T+ ++  T  D     GN++L
Sbjct: 101 ------------MTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL 148
Query: 295 IKLLE 299
            ++L+
Sbjct: 149 AEILQ 153

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 90/181 (49%), Gaps = 11/181 (6%)
Query: 97  RLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLA 156
           ++K++  D T+ + + + E     N A ++ D+   K LI  GAD+N  +    SP   A
Sbjct: 20  KVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA 79
Query: 157 TSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 215
            ++G  +I  ++++    D+N  +++G   L+ A + GH     LL+++G   ++D    
Sbjct: 80  GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE-DIDFQND 138
Query: 216 F------LCIAVARGDS---DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL 266
           F        + +  G+    D++K ++ NG D + +D   RT +  A  +G   ++K+L 
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198
Query: 267 E 267
           +
Sbjct: 199 Q 199

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 17/170 (10%)
Query: 142 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 201
           +++ D +G +PL++A      +I   LI +G DIN+++   ++P L A   G   + + +
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91
Query: 202 VKEGA-SLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA---- 254
           +K     LN  +   G+ L  A  +G  D +K +L +G      D D +      A    
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG----REDIDFQNDFGYTALIEA 147
Query: 255 ---SEGLYL---MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
               EG  L   + KLL+E GA    KD  G T +D     G   + K+L
Sbjct: 148 VGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 8/169 (4%)
Query: 84  FVCHGVLGKESNLRLKQVESDITFHI----GKHEAELALRFNSAAYHGDLYQLKGLI-RA 138
           F  H +L       L +V+  +   I         E AL    A+ H    Q+  L+ R 
Sbjct: 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK 236
Query: 139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 198
           GA++N+ + D  +PLH+A  R + D+   L + G  +N  D  G T L  A   GH    
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTC 296
Query: 199 SLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHR 247
            LL+  G+  ++     F     A+  ++ ++++LS      + D D+R
Sbjct: 297 RLLLSYGSDPSIISLQGF---TAAQMGNEAVQQILSESTPMRTSDVDYR 342

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 180 KFGNTPLLEAIKCGHD-GVTSLLVKEGASLNVDDA--GSFLCIAVARGDSDLLKRVLSNG 236
           ++    LLEA + G++  + +LL     + +  D    + L +A       +++ +L +G
Sbjct: 22  EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG 81
Query: 237 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 296
            D +++D     PLH A S G Y + +LLL+ GA V   D W  TPL E     +KN ++
Sbjct: 82  ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA---ASKNRVE 138
Query: 297 L 297
           +
Sbjct: 139 V 139

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV 173
           ++L  +   AA  G   +++ L+  GAD+N  D  G +PLHLA    + +I   L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDL 228
           D+N  D  G TPL      GH  +  +L+K GA +N  D    +   I++  G+ DL
Sbjct: 72  DVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
Query: 186 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRD 243
           LLEA + G D    +L+  GA +N +D      L +A      ++++ +L NG D N+ D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
               TPLH+ A  G   + ++LL+ GA V  +D++G T  D     GN++L ++L+
Sbjct: 78  AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 133

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 2/182 (1%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
            + AA HG    L+ LI  G  +N    D  SPLH A   G+      L++ G  +N   
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122
Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSFLCIAVARGDSDLLKRVLSNGVD 238
              +TPL  A   G     +LL++ GAS+  + D  S +  A  RG  + +  +++ G +
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGN 182
Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            + +     TPL++A         K LLE+GA V  + +  ++PL       ++ L  LL
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVVRTASEELACLL 241
Query: 299 ED 300
            D
Sbjct: 242 MD 243

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
           L++ GA  N  D  G SP+H A   G+ D    L++ G D+N+ D  G  P+  A++ GH
Sbjct: 60  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 195 DGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 239
             V S L  E + L+  DA     L +A+ RG  DL+  +  + V P
Sbjct: 120 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGHMVAP 165

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 156 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 214
           A +RG  +++   L ++ V  +  ++FG T L + +  G   +   L+K+GAS NV D  
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTS 73
Query: 215 SFLCI--AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
               +  A   G  D LK ++ +G D N  D     P+H+A  EG +      L A + +
Sbjct: 74  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFLAAESDL 132
Query: 273 FTKDRWGNTPLDEGRMCGNKNLIKLLE 299
             +D  G TPL+     G ++L+ +L+
Sbjct: 133 HRRDARGLTPLELALQRGAQDLVDILQ 159

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 2/104 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA HG +  ++ L++ GAD         S L LA S+GY DI   L+  GVD+N  D  G
Sbjct: 59  AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 118
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGA--SLNVDDAGSFLCIAVARG 224
            TPLL A+   H     +L++ GA  ++  D   + + +AVA G
Sbjct: 119 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG 162

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRV 232
           IN  D+ G TPL+ A   G   V   L++ GA   +   G  S L +A ++G +D++K +
Sbjct: 45  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 233 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 292
           L  GVD N  D++  TPL  A         K+LLE+GA    +   G   +D     G +
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Query: 293 NLIKLLE 299
           ++ +++E
Sbjct: 165 SVQQVIE 171

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 132 LKGLIRAGA----DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPL 186
           L+ L+ + A    DL   +YDG + LH+A +   ++    L+++G DI+  D K G +PL
Sbjct: 95  LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPL 154
Query: 187 LEAIKCGHDGVTSLLVKEGASLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDY 244
           + A++     +  LL++ GA++N       S L  A  RG   L++ ++ +G D + ++ 
Sbjct: 155 IHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 214
Query: 245 DHRTPLHVAASE 256
            + TPL VA S 
Sbjct: 215 HNDTPLMVARSR 226

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 176
           +L  +  A  G++  L   I     +N TD +G +PL  A + G   +  FL+Q G D  
Sbjct: 2   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 61
Query: 177 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLS 234
           +  K   + L  A   G+  +  +L+  G  +N  D   G+ L  AV       +K +L 
Sbjct: 62  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 121
Query: 235 NGVDP 239
           +G DP
Sbjct: 122 SGADP 126

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRV 232
           IN  D+ G TPL+ A   G   V   L++ GA   +   G  S L +A ++G +D++K +
Sbjct: 27  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 233 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 292
           L  GVD N  D++  TPL  A         K+LLE+GA    +   G   +D     G +
Sbjct: 87  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Query: 293 NLIKLLE 299
           ++ +++E
Sbjct: 147 SVQQVIE 153

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 176
           +L  +  A  G++  L   I     +N TD +G +PL  A + G   +  FL+Q G D  
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63
Query: 177 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLS 234
           +  K   + L  A   G+  +  +L+  G  +N  D   G+ L  AV       +K +L 
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Query: 235 NGVDP 239
           +G DP
Sbjct: 124 SGADP 128

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRV 232
           IN  D+ G TPL+ A   G   V   L++ GA   +   G  S L +A ++G +D++K +
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 233 LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 292
           L  GVD N  D++  TPL  A         K+LLE+GA    +   G   +D     G +
Sbjct: 89  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 293 NLIKLLE 299
           ++ +++E
Sbjct: 149 SVQQVIE 155

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
           L++ GA  N  D  G SP+H A   G+ D    L++ G D+N+ D  G  P+  A++ GH
Sbjct: 54  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 195 DGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLL 229
             V S L  E + L+  DA     L +A+ RG  DL+
Sbjct: 114 TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLV 149

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 156 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 214
           A +RG  +++   L ++ V  +  ++FG T L + +  G   +   L+K+GAS NV D  
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSTAIALELLKQGASPNVQDTS 67
Query: 215 SFLCI--AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
               +  A   G  D LK ++ +G D N  D     P+H+A  EG +      L A + +
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG-HTAVVSFLAAESDL 126
Query: 273 FTKDRWGNTPLDEGRMCGNKNLIKLLE 299
             +D  G TPL+     G ++L+ +L+
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQ 153

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 164 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAV 221
           + L+L     D+N  D  G +PL  A + G   V  +L+  GA +NV + G  + L +A 
Sbjct: 16  VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 75
Query: 222 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 281
           + G  D+++++L    D N+ +     PLH A   G   +A+ L+  GA V   +++G  
Sbjct: 76  SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 135
Query: 282 PLDEGR 287
           P+D+ +
Sbjct: 136 PVDKAK 141

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A+  G++  ++ L+  GAD +    +  S L LA++ GY DI   L+++ VDINI D  G
Sbjct: 43  ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAG-SFLCIAVARG 224
            TPLL A++  H      L+  GA L  + D+G + + +AVA G
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 32/185 (17%)
Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 175
           +L  +  A  G+L QLK  +R G +L NK D  G +PL  A++ G  +   FL++ G D 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 176 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSN 235
           +I                       L KE  S         L +A   G +D++  +L  
Sbjct: 63  HI-----------------------LAKERESA--------LSLASTGGYTDIVGLLLER 91
Query: 236 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 295
            VD N  D++  TPL  A         + LL  GA + T+   G TP+D     G + + 
Sbjct: 92  DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 296 KLLED 300
           +++E+
Sbjct: 152 QVIEN 156

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
           L++ GA  N  D  G SP+H A   G+ D    L++ G D+N  D  G+ P+  AI+ GH
Sbjct: 60  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 195 DGVTSLLVKEGASLNVDDAGSFLCIAVAR 223
             V S L  E + L+  DA     + +AR
Sbjct: 120 SSVVSFLAPE-SDLHHRDASGLTPLELAR 147

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 5/147 (3%)
Query: 156 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 214
           A +RG  +++   L ++ V  +  ++FG T L + +  G   V   L+K+GAS NV DA 
Sbjct: 15  AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 73
Query: 215 SFLCI--AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
               +  A   G  D LK ++ +G D N+ D     P+H+A  EG   +   L    + +
Sbjct: 74  GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 132
Query: 273 FTKDRWGNTPLDEGRMCGNKNLIKLLE 299
             +D  G TPL+  R  G +NL+ +L+
Sbjct: 133 HHRDASGLTPLELARQRGAQNLMDILQ 159

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
Query: 164 ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAV 221
           + L+L     D+N  D  G +PL  A + G   V  +L+  GA +NV + G  + L +A 
Sbjct: 21  VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80
Query: 222 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 281
           + G  D+++++L    D N+ +     PLH A   G   +A+ L+  GA V   +++G  
Sbjct: 81  SHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEM 140
Query: 282 PLDEGR 287
           P+D+ +
Sbjct: 141 PVDKAK 146

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
           L++ GA  N  D  G SP+H A   G+ D    L++ G D+N  D  G+ P+  AI+ GH
Sbjct: 62  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 195 DGVTSLLVKEGASLNVDDAGSFLCIAVAR 223
             V S L  E + L+  DA     + +AR
Sbjct: 122 SSVVSFLAPE-SDLHHRDASGLTPLELAR 149

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 5/147 (3%)
Query: 156 ATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 214
           A +RG  +++   L ++ V  +  ++FG T L + +  G   V   L+K+GAS NV DA 
Sbjct: 17  AAARGDVQEVRRLLHRELVHPDALNRFGKTAL-QVMMFGSPAVALELLKQGASPNVQDAS 75
Query: 215 SFLCI--AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
               +  A   G  D LK ++ +G D N+ D     P+H+A  EG   +   L    + +
Sbjct: 76  GTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDL 134
Query: 273 FTKDRWGNTPLDEGRMCGNKNLIKLLE 299
             +D  G TPL+  R  G +NL+ +L+
Sbjct: 135 HHRDASGLTPLELARQRGAQNLMDILQ 161

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 71/163 (43%), Gaps = 31/163 (19%)
Query: 145 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKE 204
           T++ G + LH+A+ +G      +L+Q G D N+KD  G TPL EA   GH  V  LL++ 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 205 GASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKL 264
            A +                               N+  Y + +PLH AA  G   + KL
Sbjct: 66  KALV-------------------------------NTTGYQNDSPLHDAAKNGHVDIVKL 94
Query: 265 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS 307
           LL  GAS    + +G  P+D       K+L+ L E  + +  S
Sbjct: 95  LLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A+  G++  ++ L+  GAD +    +  S L LA++ GY DI   L+++ VDINI D  G
Sbjct: 43  ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAG-SFLCIAVARG 224
            TPLL A+   H      L+  GA L  + D+G + + +AVA G
Sbjct: 103 GTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 80/185 (43%), Gaps = 32/185 (17%)
Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 175
           +L  +  A  G+L QLK  +R G +L NK D  G +PL  A++ G  +   FL++ G D 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 176 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSN 235
           +I                       L KE  S         L +A   G +D++  +L  
Sbjct: 63  HI-----------------------LAKERESA--------LSLASTGGYTDIVGLLLER 91
Query: 236 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 295
            VD N  D++  TPL  A         + LL  GA + T+   G TP+D     G + + 
Sbjct: 92  DVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQ 151
Query: 296 KLLED 300
           +++E+
Sbjct: 152 QVIEN 156

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 33/183 (18%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
            + A    + ++++ L+ +   L  + D DGR PLH + S    +IT FL+ K  ++N+ 
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCIAVARGDSDLLKRVLSNGV 237
           D                               DD+G +   IA + G+ +++K +    +
Sbjct: 66  DY-----------------------------PDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 238 DPNSRDYDHR--TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 295
            P+     ++  T LH+A  +  + +++ L+E GASV  KD++   PL      G+  LI
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 296 KLL 298
           +LL
Sbjct: 157 ELL 159

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 33/183 (18%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
            + A    + ++++ L+ +   L  + D DGR PLH + S    +IT FL+ K  ++N+ 
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCIAVARGDSDLLKRVLSNGV 237
           D                               DD+G +   IA + G+ +++K +    +
Sbjct: 66  DY-----------------------------PDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 238 DPNSRDYDHR--TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 295
            P+     ++  T LH+A  +  + +++ L+E GASV  KD++   PL      G+  LI
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 296 KLL 298
           +LL
Sbjct: 157 ELL 159

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 33/183 (18%)
Query: 120 FNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
            + A    + ++++ L+ +   L  + D DGR PLH + S    +IT FL+ K  ++N+ 
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCIAVARGDSDLLKRVLSNGV 237
           D                               DD+G +   IA + G+ +++K +    +
Sbjct: 66  DY-----------------------------PDDSGWTPFHIACSVGNLEVVKSLYDRPL 96
Query: 238 DPNSRDYDHR--TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 295
            P+     ++  T LH+A  +  + +++ L+E GASV  KD++   PL      G+  LI
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156
Query: 296 KLL 298
           +LL
Sbjct: 157 ELL 159

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 25/206 (12%)
Query: 103 SDITFHIGKHEAELALR-------FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHL 155
            DI   + +H A+  LR       F  AA  G +  LK  +  GAD+N+ D+ G +    
Sbjct: 52  EDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFME 111
Query: 156 ATSRGYEDITLFLIQKGVDINIKDKF----------GNTPLLEAIKCGHDGVTSLLVKE- 204
           A   G      FL ++G ++N++ K           G T L++A + GH  V  +L+ E 
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171
Query: 205 GASLNV-DDAG--SFLCIAVARGDSD---LLKRVLSNGVDPNSRDYDHRTPLHVAASEG- 257
           GA +N  D+ G  + +   ++  DSD   +   +L +G D N R    +TPL +A  +  
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231
Query: 258 LYLMAKLLLEAGASVFTKDRWGNTPL 283
           L L+ +LL +    +   D  G T L
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTAL 257

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 174
           AL F ++ +   L  +   +  GAD+N  +   D  +PL  AT+        FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLL 229
           +N  D  G  PL  A   GH G+  L +K GA L   D+     L IA+   ++D++
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 174
           AL F ++ +   L  +   +  GAD+N  +   D  +PL  AT+        FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLL 229
           +N  D  G  PL  A   GH G+  L +K GA L   D+     L IA+   ++D++
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVD 174
           AL F ++ +   L  +   +  GAD+N  +   D  +PL  AT+        FL+Q G +
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLL 229
           +N  D  G  PL  A   GH G+  L +K GA L   D+     L IA+   ++D++
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 25/205 (12%)
Query: 104 DITFHIGKHEAELALR-------FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLA 156
           DI   + +H A+  LR       F  AA  G +  LK  +  GAD+N+ D+ G +    A
Sbjct: 73  DIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 132
Query: 157 TSRGYEDITLFLIQKGVDINIKDKF----------GNTPLLEAIKCGHDGVTSLLVKE-G 205
              G      FL ++G ++N++ K           G T L++A + GH  V  +L+ E G
Sbjct: 133 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMG 192
Query: 206 ASLNV-DDAG--SFLCIAVARGDSD---LLKRVLSNGVDPNSRDYDHRTPLHVAASEG-L 258
           A +N  D+ G  + +   ++  DSD   +   +L +G D N R    +TPL +A  +  L
Sbjct: 193 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 252
Query: 259 YLMAKLLLEAGASVFTKDRWGNTPL 283
            L+ +LL +    +   D  G T L
Sbjct: 253 GLVQRLLEQEHIEINDTDSDGKTAL 277

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 91  GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGR 150
           GK +NLR K     I   +      LAL  +S+   G+   ++ +I    D +  + +G 
Sbjct: 14  GKRTNLR-KTGSERIAHGMRVKFNPLALLLDSS-LEGEFDLVQRIIYEVDDPSLPNDEGI 71
Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL 208
           + LH A   G+ +I  FL+Q GV++N  D  G TPL  A  C +  V   LV+ GA++
Sbjct: 72  TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 17/121 (14%)
Query: 207 SLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL 266
           SL  D+  + L  AV  G ++++K ++  GV+ N+ D D  TPLH AAS     + K L+
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 267 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE-FHYCSQGMIGIAENLLL 325
           E+GA+VF                   + ++   D KC ++ E +  CSQ + G+ E + +
Sbjct: 124 ESGAAVFAM---------------TYSDMQTAAD-KCEEMEEGYTQCSQFLYGVQEKMGI 167
Query: 326 L 326
           +
Sbjct: 168 M 168

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 181 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 238
           FG T L + +K G+  +   L+  GA+ ++ D   F  I  A   G  D L+ +L N  D
Sbjct: 37  FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQAD 95
Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 297
            N  D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 298 LE 299
           ++
Sbjct: 156 MQ 157

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 91  GKESNLRLKQVESDITFH---IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDY 147
           GK +NLR  +  S+   H   +  +   LAL  +S+   G+   ++ +I    D +  + 
Sbjct: 12  GKRTNLR--KTGSERIAHGMRVKFNPLPLALLLDSS-LEGEFDLVQRIIYEVDDPSLPND 68
Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 207
           +G + LH A   G+ +I  FL+Q GV++N  D  G TPL  A  C +  V   LV+ GA+
Sbjct: 69  EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA 128
Query: 208 L 208
           +
Sbjct: 129 V 129

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 22/156 (14%)
Query: 177 IKDKFGNTPLLEAIKCGHDGVTSLLVK-----EGASLNVDDAGSFLCIAVARGDSDLLKR 231
           ++ KF   PL   +    +G   L+ +     +  SL  D+  + L  AV  G ++++K 
Sbjct: 29  MRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF 88
Query: 232 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 291
           ++  GV+ N+ D D  TPLH AAS     + K L+E+GA+VF                  
Sbjct: 89  LVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM---------------T 133
Query: 292 KNLIKLLEDAKCTQLSE-FHYCSQGMIGIAENLLLL 326
            + ++   D KC ++ E +  CSQ + G+ E + ++
Sbjct: 134 YSDMQTAAD-KCEEMEEGYTQCSQFLYGVQEKMGIM 168

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 168 LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAG-SFLCIAVARGD 225
           L  +  D++ +   G TPL+ A +   +G+   L+   A +N VDD G S L  A A  +
Sbjct: 1   LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 226 SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 285
            D    +L NG + + ++    TPL +AA EG Y  AK+LL+  A+    D     P D 
Sbjct: 61  VDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 120
Query: 286 GRMCGNKNLIKLLED 300
            +   + ++++LL++
Sbjct: 121 AQERMHHDIVRLLDE 135

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 81/179 (45%), Gaps = 33/179 (18%)
Query: 122 SAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
           SAA  GDL QL  L++   ++N  +  GR+ L +    G  +I   L+ +G + ++KD+ 
Sbjct: 11  SAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV-MKLGNPEIARRLLLRGANPDLKDRT 69
Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 241
           GN  + +A + G                      FL         D L+ +L    D N 
Sbjct: 70  GNAVIHDAARAG----------------------FL---------DTLQTLLEFQADVNI 98
Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
            D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L++
Sbjct: 99  EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDIT-LFLIQKGVDINIKDKF 181
           A  HG +  +K L+   AD+N  D DG + L  A   G+++I  L L     DI++ D+ 
Sbjct: 190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRD 249
Query: 182 GNTPLLEAIKCGHDGVTSLL 201
           G+T L+ A+  G   + S+L
Sbjct: 250 GSTALMVALDAGQSEIASML 269

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 181 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 238
           FG T L + +K G+  +   L+  GA+ ++ D   F  I  A   G  D L+ +L    D
Sbjct: 37  FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQAD 95
Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 297
            N  D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 298 LE 299
           ++
Sbjct: 156 MQ 157

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 88/221 (39%), Gaps = 50/221 (22%)
Query: 129 LYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 188
           +++ K  I AGAD+N  D D  +PL LA       +  +L + G D  I +K   + L +
Sbjct: 146 VHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGADPTIYNKSERSALHQ 205
Query: 189 AIKC-------------------------------------GHDGVTS--LLVKEGASLN 209
           A                                        G D V S  LLV++GA ++
Sbjct: 206 AAANRDFGXXVYXLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVD 265
Query: 210 VDDAG----------SFLCIAVARGDSDLLKRVL-SNGVDPNSRDYDHRTPLHVAASEGL 258
            D A           + L  A    +  ++K ++   G + + +D D +TP+ +AA EG 
Sbjct: 266 YDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGR 325
Query: 259 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
             +   L++ GASV   D   +T     +   + N++ + +
Sbjct: 326 IEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 366

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 181 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 238
           FG T L + +K G+  +   L+  GA+ ++ D   F  I  A   G  D L+ +L    D
Sbjct: 37  FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 297
            N  D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 298 LE 299
           ++
Sbjct: 156 MQ 157

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 61/122 (50%), Gaps = 4/122 (3%)
Query: 181 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI--AVARGDSDLLKRVLSNGVD 238
           FG T L + +K G+  +   L+  GA+ ++ D   F  I  A   G  D L+ +L    D
Sbjct: 37  FGRTAL-QVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD 95
Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKL 297
            N  D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 298 LE 299
           ++
Sbjct: 156 MQ 157

>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative Modeling And Nmr Data Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 31/149 (20%)
Query: 153 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 212
           L  A +RG  +    L++ G D N  ++FG  P+ + +  G   V  LL+  GA  N  D
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPNCAD 74
Query: 213 AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
             +                                 P+H AA EG      +L  AGA +
Sbjct: 75  PATLT------------------------------RPVHDAAREGFLDTLVVLHRAGARL 104
Query: 273 FTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301
              D WG  P+D     G++++ + L  A
Sbjct: 105 DVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 142 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSL 200
           L  T+Y+G + LHLA+  GY  I   L+  G D+N ++   G T L  A+   +  + SL
Sbjct: 107 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 166
Query: 201 LVKEGASLN 209
           L+K GA +N
Sbjct: 167 LLKCGADVN 175

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 12/161 (7%)
Query: 131 QLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 190
           Q+KG +   A LN  +   ++PLHLA      +I   L+  G D  ++D  GNTPL  A 
Sbjct: 27  QVKGDL---AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 83
Query: 191 KCGHDGVTSLLVKEGAS------LNVDDAGSFLCIAVA--RGDSDLLKRVLSNGVDPNSR 242
           + G      +L +   +      L   +     C+ +A   G   +++ ++S G D N++
Sbjct: 84  EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 143
Query: 243 D-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 282
           +  + RT LH+A       +  LLL+ GA V      G +P
Sbjct: 144 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 184

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 142 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF-GNTPLLEAIKCGHDGVTSL 200
           L  T+Y+G + LHLA+  GY  I   L+  G D+N ++   G T L  A+   +  + SL
Sbjct: 110 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 201 LVKEGASLN 209
           L+K GA +N
Sbjct: 170 LLKCGADVN 178

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 12/161 (7%)
Query: 131 QLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 190
           Q+KG +   A LN  +   ++PLHLA      +I   L+  G D  ++D  GNTPL  A 
Sbjct: 30  QVKGDL---AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC 86
Query: 191 KCGHDGVTSLLVKEGAS------LNVDDAGSFLCIAVA--RGDSDLLKRVLSNGVDPNSR 242
           + G      +L +   +      L   +     C+ +A   G   +++ ++S G D N++
Sbjct: 87  EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ 146
Query: 243 D-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 282
           +  + RT LH+A       +  LLL+ GA V      G +P
Sbjct: 147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 187

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 149 GRSPLHLATSRG--YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSL---LVK 203
           G++ LH     G  Y +    L+Q G     KDK   TPL  A +  +     L    V 
Sbjct: 138 GQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRAXEFRNREALDLXXDTVP 197
Query: 204 EGASLNVDDAG----SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLY 259
             +SL +D A     S L  A+     D+  R +  G+D N  D +H  PL+++      
Sbjct: 198 SKSSLRLDYANKQGNSHLHWAILINWEDVAXRFVEXGIDVNXEDNEHTVPLYLSVRAAXV 257
Query: 260 LMAKLLLE 267
           L+ K LL+
Sbjct: 258 LLTKELLQ 265

>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structure Of The Cdk6-P16ink4a Tumor Suppressor Complex Length = 156

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 31/158 (19%)
Query: 153 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 212
           L  A +RG  +    L++ G + N  + +G  P+ + +  G   V  LL+  GA  N  D
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPI-QVMMMGSARVAELLLLHGAEPNCAD 74
Query: 213 AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
             +                                 P+H AA EG      +L  AGA +
Sbjct: 75  PATLT------------------------------RPVHDAAREGFLDTLVVLHRAGARL 104
Query: 273 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH 310
             +D WG  P+D     G++++ + L  A        H
Sbjct: 105 DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH 142

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA  G+L  ++  ++   D ++ + +G + LH A       I  FLI  G ++N  D  G
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87
Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASL 208
            TPL  A  C    +   LV+ GA++
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAI 113

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
           A  H D   ++ L  AGADLNK +   GR+PLHLA       +   L++ G D   +   
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224
Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL 217
           G TPL  A+   +  +  LL   GA    +D G  L
Sbjct: 225 GRTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKL 259

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
           A  H D   ++ L  AGADLNK +   GR+PLHLA       +   L++ G D   +   
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224
Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL 217
           G TPL  A+   +  +  LL   GA    +D G  L
Sbjct: 225 GRTPLGSALLRPNPILARLLRAHGAP-EPEDGGDKL 259

>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG 91
           +  + LF      F+  ++ +L  E F PG+ I+ +G +  ++YF+ HGV+ 
Sbjct: 77  VASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVS 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	329
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-48
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-47
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-46
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-44
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-43
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-48
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-37
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-37
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-25
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-47
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-44
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-35
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-34
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-45
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-36
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-44
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-43
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-38
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-37
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-44
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-40
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-31
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-25
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-44
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-42
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-36
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-35
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-43
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-40
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-29
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-21
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-43
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-39
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-36
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-29
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-42
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-34
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-42
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-37
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-42
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-39
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-41
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-36
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-35
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-27
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-41
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-38
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-33
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-41
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-36
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-26
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-41
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-32
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-40
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-38
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-28
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-40
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-28
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-39
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-39
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-36
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-39
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-32
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-39
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-35
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-33
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-25
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-22
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-38
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-38
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-32
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-38
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-35
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-33
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-38
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-38
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-34
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-17
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-37
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-33
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-37
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-36
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-28
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-36
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-28
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	5e-35
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-28
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-23
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-20
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-35
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-29
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-34
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-31
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-34
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-32
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-32
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-34
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-28
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-28
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-34
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-15
2rfa_A	232	Transient receptor potential cation channel subfa	2e-34
2rfa_A	232	Transient receptor potential cation channel subfa	4e-30
2rfa_A	232	Transient receptor potential cation channel subfa	7e-28
2rfa_A	232	Transient receptor potential cation channel subfa	5e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-31
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-31
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-30
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-31
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-26
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-29
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-27
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-29
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-25
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-12
2pnn_A	273	Transient receptor potential cation channel subfa	4e-27
2pnn_A	273	Transient receptor potential cation channel subfa	4e-20
2pnn_A	273	Transient receptor potential cation channel subfa	4e-10
2pnn_A	273	Transient receptor potential cation channel subfa	5e-04
2etb_A	256	Transient receptor potential cation channel subfam	7e-26
2etb_A	256	Transient receptor potential cation channel subfam	2e-25
2etb_A	256	Transient receptor potential cation channel subfam	3e-23
2etb_A	256	Transient receptor potential cation channel subfam	1e-14
2etb_A	256	Transient receptor potential cation channel subfam	4e-13
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-25
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-23
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-23
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-23
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	9e-19
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-16
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-08
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	3e-18
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	2e-17
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-16
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-15
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-13
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	2e-14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-13
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-12
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-04
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	5e-13
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	9e-10
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	4e-09
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	1e-07
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	3e-07
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	4e-07
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	5e-07
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	8e-07
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	5e-07
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	2e-06
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	6e-07
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	4e-06
3uo9_A	534	Glutaminase kidney isoform, mitochondrial; hydrola	4e-06
3uo9_A	534	Glutaminase kidney isoform, mitochondrial; hydrola	5e-04
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	5e-06
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	4e-05
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	5e-06
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	3e-05
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	1e-05
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	1e-05
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	1e-05
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	3e-05
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	5e-05
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	1e-04
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	1e-04
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	2e-04
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	3e-04
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	3e-04
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	3e-04
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	4e-04
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	5e-04
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	6e-04
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	8e-04
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	9e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  165 bits (420), Expect = 8e-48
 Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 2/179 (1%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA    +   + L++ G   N     G +PLHLA   G+ ++   L+ K  + N+ +K G
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSG 278

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 240
            TPL    + GH  V  +L+K G  ++      +  L +A   G+  L+K +L +  D N
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN 338

Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
           ++     +PLH AA +G   +  LLL+ GAS       G TPL   +  G  ++  +L+
Sbjct: 339 AKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  163 bits (414), Expect = 6e-47
 Identities = 55/178 (30%), Positives = 85/178 (47%), Gaps = 2/178 (1%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A++ G L  +K L++ GA  N ++    +PLH+A   G+ ++  +L+Q    +N K K  
Sbjct: 21  ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 240
            TPL  A + GH  +  LL++  A+ N+        L IA   G  + +  +L       
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140

Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
                  TPLHVAA  G   +A+LLLE  A      + G TPL       N +++KLL
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  161 bits (410), Expect = 2e-46
 Identities = 53/178 (29%), Positives = 80/178 (44%), Gaps = 2/178 (1%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA +G +   + L+   A  N    +G +PLH+A      DI   L+ +G   +     G
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 240
            TPL  A K     V   L++ G S N +       L +A   G ++++  +LS   + N
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 272

Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
             +    TPLH+ A EG   +A +L++ G  V    R G TPL      GN  L+K L
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  157 bits (399), Expect = 1e-44
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 2/178 (1%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA  G +  +  L+   A        G +PLH+A   G   +   L+++    N   K G
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNG 179

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 240
            TPL  A+   +  +  LL+  G S +      +  L IA  +   ++ + +L  G   N
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239

Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           +      TPLH+AA EG   M  LLL   A+    ++ G TPL      G+  +  +L
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  152 bits (386), Expect = 7e-43
 Identities = 50/162 (30%), Positives = 72/162 (44%), Gaps = 2/162 (1%)

Query: 139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 198
           G         G +PLH+A+  G+  I   L+Q+G   N+ +    TPL  A + GH  V 
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 199 SLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASE 256
             L++  A +N         L  A   G ++++K +L N  +PN       TPLH+AA E
Sbjct: 64  KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123

Query: 257 GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           G       LLE  AS     + G TPL      G   + +LL
Sbjct: 124 GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  147 bits (374), Expect = 5e-41
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 5/167 (2%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA  G    +  L+   A+ N  +  G +PLHL    G+  +   LI+ GV ++   + G
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 311

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF-LCIAVARGDSDLLKRVLSNGVDPN 240
            TPL  A   G+  +   L++  A +N     G   L  A  +G +D++  +L NG  PN
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371

Query: 241 SRDYDHRTPLHVAASEGLYLMAKLL---LEAGASVFTKDRWGNTPLD 284
               D  TPL +A   G   +  +L    +  + V   D+   +  +
Sbjct: 372 EVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  112 bits (282), Expect = 3e-28
 Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 2/130 (1%)

Query: 171 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDL 228
            G+      + G TPL  A   GH  +   L++ GAS NV +      L +A   G +++
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 229 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM 288
            K +L N    N++  D +TPLH AA  G   M KLLLE  A+       G+TPL     
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122

Query: 289 CGNKNLIKLL 298
            G+   +  L
Sbjct: 123 EGHVETVLAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 67.1 bits (165), Expect = 1e-12
 Identities = 21/65 (32%), Positives = 28/65 (43%)

Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
           S G+          TPLHVA+  G   + K LL+ GAS    +    TPL      G+  
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 294 LIKLL 298
           + K L
Sbjct: 62  VAKYL 66

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  161 bits (409), Expect = 9e-48
 Identities = 49/177 (27%), Positives = 80/177 (45%), Gaps = 2/177 (1%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA HG    L+ LI  G  +N    D  SPLH A   G+      L++ G  +N      
Sbjct: 66  AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW 125

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCIAVARGDSDLLKRVLSNGVDPNS 241
           +TPL  A   G     +LL++ GAS+  +   +  +  A  RG  + +  +++ G + + 
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDH 185

Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           +     TPL++A         K LLE+GA V  + +  ++PL       ++ L  LL
Sbjct: 186 KISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVVRTASEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  133 bits (338), Expect = 2e-37
 Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 3/151 (1%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A   G    +  L++ GA +     D  SP+H A  RG+ +    LI  G +I+ K    
Sbjct: 132 ACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL 190

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-SFLCIAVARGDSDLLKRVLSNGVDPNS 241
            TPL  A +         L++ GA +N      S L   V     +L   ++  G D  +
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQA 250

Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
           ++ + + P+ +   E   L    L   GAS+
Sbjct: 251 KNAEGKRPVELVPPES-PLAQLFLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  133 bits (337), Expect = 4e-37
 Identities = 47/209 (22%), Positives = 71/209 (33%), Gaps = 34/209 (16%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTD-------------------------------YDGRS 151
            + H   +   GL+  G+ +   D                                   S
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

Query: 152 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 211
           P+H A   G++     LI +G  +NI      +PL EA   GH     +L+K GA +N  
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 121

Query: 212 DAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG 269
            A     L  A   G  D +  +L +G        D  +P+H AA  G       L+  G
Sbjct: 122 TADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYG 180

Query: 270 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            ++  K     TPL        +  +K L
Sbjct: 181 GNIDHKISHLGTPLYLACENQQRACVKKL 209

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  102 bits (257), Expect = 2e-25
 Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 10/149 (6%)

Query: 155 LATSRGYEDITLFLIQKGVDINIKDKF-----GNTPLLEAIKCGHDGVTSLLVKEGASLN 209
           + +S  +   +  L+ +G  +   D       G+ P       G       L+      +
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGD 55

Query: 210 VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG 269
                S +  A   G    L+ ++S G   N    DH +PLH A   G     K+LL+ G
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG 115

Query: 270 ASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           A V       +TPL    + G+ + + LL
Sbjct: 116 AQVNGVTADWHTPLFNACVSGSWDCVNLL 144

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 87.2 bits (217), Expect = 6e-20
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A  +     +K L+ +GAD+N+      SPLH       E++   L+  G D   K+  G
Sbjct: 197 ACENQQRACVKKLLESGADVNQGK-GQDSPLHAVVRTASEELACLLMDFGADTQAKNAEG 255

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLN 209
             P+              L +EGASL 
Sbjct: 256 KRPVELVPPESPL-AQLFLEREGASLP 281

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  151 bits (385), Expect = 1e-45
 Identities = 42/163 (25%), Positives = 73/163 (44%), Gaps = 3/163 (1%)

Query: 123 AAYHGDLYQLKGLIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
            A  G+L QLK  +R G +L NK D  G +PL  A++ G  +   FL++ G D +I  K 
Sbjct: 9   LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE 68

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 239
             + L  A   G+  +  LL++    +N+ D      L  AV       ++ +L+ G D 
Sbjct: 69  RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128

Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP 282
            +      TP+ +A + G   + +++      +F  +     P
Sbjct: 129 TTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  127 bits (322), Expect = 3e-36
 Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 3/156 (1%)

Query: 149 GRSPLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 207
               +H   ++G  D     ++KG + +N  D+ G TPL+ A   G       L++ GA 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 208 LNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265
            ++        L +A   G +D++  +L   VD N  D++  TPL  A         + L
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 266 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301
           L  GA + T+   G TP+D     G + + +++E+ 
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  151 bits (384), Expect = 2e-44
 Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 5/185 (2%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
           AA +  +  +K  I  GA +++   D   +PLH AT +G+  + + L++ G D ++ D  
Sbjct: 49  AAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGE 108

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDS-DLLKRVLSNGVD 238
           G + +  A + GH  + + L+ +G  +++ D      L  A  R  S D  + +L+  V 
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS 168

Query: 239 PNSRD-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 297
            N  D Y   T LH A   G   +  LLLEAGA+V  ++  G + LD  +   N  +I  
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINH 228

Query: 298 LEDAK 302
           L++A+
Sbjct: 229 LQEAR 233

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  147 bits (374), Expect = 4e-43
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 5/181 (2%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK-F 181
           A  +G   + + L+ AG D+ + D +  + LH A      D+  + I KG  ++      
Sbjct: 16  ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 239
            +TPL  A + GH  +   L+K GA  ++ D      + +A   G + ++  +++ G D 
Sbjct: 76  NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135

Query: 240 NSRDYDHRTPLHVAASEGLYL-MAKLLLEAGASVFTKDRW-GNTPLDEGRMCGNKNLIKL 297
           +  D +  TPL  AA     +   +LLL    SV   D++  NT L    + GN  +I L
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195

Query: 298 L 298
           L
Sbjct: 196 L 196

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  135 bits (343), Expect = 2e-38
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 4/158 (2%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A   G L  +  L++ GAD +  D +G S +HLA   G+  I  +LI KG D+++ D+ G
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142

Query: 183 NTPLLEAIKCGHDG-VTSLLVKEGASLNV-DDAGSF--LCIAVARGDSDLLKRVLSNGVD 238
            TPL+ A    H    T LL+    S+N+ D       L  AV  G++ ++  +L  G +
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202

Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 276
            ++++    + L +A       M   L EA  +    +
Sbjct: 203 VDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  132 bits (335), Expect = 3e-37
 Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 3/145 (2%)

Query: 142 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 201
           +   D      +  AT  G  +    L++ G D+   DK   T L  A       +    
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 202 VKEGASLNV--DDAGSF-LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL 258
           + +GA ++    D  S  L  A  +G   ++ +++  G DP+  D +  + +H+AA  G 
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH 121

Query: 259 YLMAKLLLEAGASVFTKDRWGNTPL 283
             +   L+  G  V   D+ G TPL
Sbjct: 122 TSIVAYLIAKGQDVDMMDQNGMTPL 146

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  150 bits (381), Expect = 2e-44
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 3/179 (1%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKF 181
           AA +      K L+ A AD N  D  GR+PLH A S   + +   LI+    D++ +   
Sbjct: 32  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 91

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAG-SFLCIAVARGDSDLLKRVLSNGVDP 239
           G TPL+ A +   +G+   L+   A +N  DD G S L  A A  + D    +L NG + 
Sbjct: 92  GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 151

Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           + ++    TPL +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL
Sbjct: 152 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  139 bits (354), Expect = 3e-40
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 6/169 (3%)

Query: 135 LIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 193
            I  GA L N+TD  G + LHLA      D    L++   D NI+D  G TPL  A+   
Sbjct: 10  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 69

Query: 194 HDGVTSLLVKEGASLNVDDAGSF----LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 249
             GV  +L++  A+ ++D         L +A       +L+ ++++  D N+ D   ++ 
Sbjct: 70  AQGVFQILIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 128

Query: 250 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           LH AA+      A +LL+ GA+   ++    TPL      G+    K+L
Sbjct: 129 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  114 bits (289), Expect = 8e-31
 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 31/154 (20%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA       L+ LI + AD+N  D  G+S LH A +    D  + L++ G + ++++   
Sbjct: 99  AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 158

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
            TPL  A + G      +L                               L +  + +  
Sbjct: 159 ETPLFLAAREGSYETAKVL-------------------------------LDHFANRDIT 187

Query: 243 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 276
           D+  R P  +A     + + +LL E       + 
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 99.0 bits (248), Expect = 8e-25
 Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 4/143 (2%)

Query: 160 GYEDITLFLIQKGVDI-NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-- 216
               +    I +G  + N  D+ G T L  A +         L++  A  N+ D      
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 217 LCIAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 275
           L  AV+     + + ++ N   D ++R +D  TPL +AA   +  M + L+ + A V   
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121

Query: 276 DRWGNTPLDEGRMCGNKNLIKLL 298
           D  G + L       N +   +L
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVL 144

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 87.9 bits (219), Expect = 1e-20
 Identities = 19/92 (20%), Positives = 35/92 (38%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA   ++     L++ GA+ +  +    +PL LA   G  +    L+    + +I D   
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 191

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG 214
             P   A +  H  +  LL +     +    G
Sbjct: 192 RLPRDIAQERMHHDIVRLLDEYNLVRSPQLHG 223

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  149 bits (379), Expect = 9e-44
 Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 7/183 (3%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG----VDINIK 178
           A        ++ L+ AGA     D  G++  HLA           L+       +D+  +
Sbjct: 53  AVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112

Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF---LCIAVARGDSDLLKRVLSN 235
           +  G T L  A+         LL++ GA ++  D  S    L  AV      +++ +L +
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172

Query: 236 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLI 295
           G + N++ Y   + LH A+  GL  + + L+ +GA    K+   +TPL   R     +++
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 232

Query: 296 KLL 298
           +  
Sbjct: 233 RGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  145 bits (368), Expect = 4e-42
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 11/187 (5%)

Query: 123 AAYHGDL----YQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
           A   G+L      +    + G +L+  +   ++PLHLA       +   L+  G      
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 75

Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD-DAGSF-----LCIAVARGDSDLLKRV 232
           D+ G T    A +         L+   A   +D +A ++     L +AV     + ++ +
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135

Query: 233 LSNGVDPNSRDYDH-RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 291
           L  G D ++ D    R+PL  A       M +LLL+ GA+V  +   G++ L      G 
Sbjct: 136 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 195

Query: 292 KNLIKLL 298
             L++ L
Sbjct: 196 LPLVRTL 202

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  129 bits (327), Expect = 4e-36
 Identities = 45/156 (28%), Positives = 80/156 (51%), Gaps = 7/156 (4%)

Query: 123 AAYHGDLYQLKGLIRAGA----DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
           A  H     L+ L+ + A    DL   +YDG + LH+A +   ++    L+++G DI+  
Sbjct: 86  ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145

Query: 179 D-KFGNTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAG-SFLCIAVARGDSDLLKRVLSN 235
           D K G +PL+ A++     +  LL++ GA++N    +G S L  A  RG   L++ ++ +
Sbjct: 146 DIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS 205

Query: 236 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
           G D + ++  + TPL VA S  +  + +      AS
Sbjct: 206 GADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  127 bits (322), Expect = 2e-35
 Identities = 49/168 (29%), Positives = 76/168 (45%), Gaps = 11/168 (6%)

Query: 142 LNKTDYDGRSPLHLATSRGYEDITLFLI----QKGVDINIKDKFGNTPLLEAIKCGHDGV 197
             + D DG +PLH+A  +G       L+    Q G +++I +    TPL  A+      V
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 198 TSLLVKEGASLNV-DDAG-SFLCIAVARGDSDLLKRVLSNG----VDPNSRDYDHRTPLH 251
             LLV  GAS    D  G +   +A        L+ +L +     +D  +R+YD  T LH
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121

Query: 252 VAASEGLYLMAKLLLEAGASVFTKDR-WGNTPLDEGRMCGNKNLIKLL 298
           VA +       +LLLE GA +   D   G +PL       + ++++LL
Sbjct: 122 VAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  149 bits (378), Expect = 2e-43
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 3/179 (1%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKF 181
           AA +      K L+ A AD N  D  GR+PLH A S   + +   LI+    D++ +   
Sbjct: 64  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 123

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSF-LCIAVARGDSDLLKRVLSNGVDP 239
           G TPL+ A +   +G+   L+   A +N VDD G   L  A A  + D    +L NG + 
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK 183

Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           + ++    TPL +AA EG Y  AK+LL+  A+    D     P D  +   + ++++LL
Sbjct: 184 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  140 bits (355), Expect = 5e-40
 Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 6/169 (3%)

Query: 135 LIRAGADL-NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 193
            I  GA L N+TD  G + LHLA      D    L++   D NI+D  G TPL  A+   
Sbjct: 42  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSAD 101

Query: 194 HDGVTSLLVKEGASLNVDDAGSF----LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP 249
             GV  +L++  A+ ++D         L +A       +L+ ++++  D N+ D   ++ 
Sbjct: 102 AQGVFQILIRNRAT-DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 160

Query: 250 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           LH AA+      A +LL+ GA+   ++    TPL      G+    K+L
Sbjct: 161 LHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  116 bits (293), Expect = 5e-31
 Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 17/175 (9%)

Query: 141 DLNKTDYDGRSPLHLATSRG-------------YEDITLFLIQKGVDI-NIKDKFGNTPL 186
           D+N    DG +PL +A+  G                +    I +G  + N  D+ G T L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 187 LEAIKCGHDGVTSLLVKEGASLNV-DDAG-SFLCIAVARGDSDLLKRVLSNG-VDPNSRD 243
             A +         L++  A  N+ D+ G + L  AV+     + + ++ N   D ++R 
Sbjct: 62  HLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM 121

Query: 244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           +D  TPL +AA   +  M + L+ + A V   D  G + L       N +   +L
Sbjct: 122 HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  112 bits (282), Expect = 2e-29
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 31/148 (20%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA       L+ LI + AD+N  D  G+S LH A +    D  + L++ G + ++++   
Sbjct: 131 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 190

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
            TPL  A + G      +L                               L +  + +  
Sbjct: 191 ETPLFLAAREGSYETAKVL-------------------------------LDHFANRDIT 219

Query: 243 DYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           D+  R P  +A     + + +LL     
Sbjct: 220 DHMDRLPRDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 89.1 bits (222), Expect = 7e-21
 Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 17/143 (11%)

Query: 173 VDINIKDKFGNTPLLEAIKCGHDG-------------VTSLLVKEGASLN--VDDAG-SF 216
           +D+N++   G TPL+ A   G                V S  + +GASL+   D  G + 
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 217 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTK 275
           L +A     SD  KR+L    D N +D   RTPLH A S     + ++L+   A+ +  +
Sbjct: 61  LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120

Query: 276 DRWGNTPLDEGRMCGNKNLIKLL 298
              G TPL        + +++ L
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDL 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 60.6 bits (148), Expect = 7e-11
 Identities = 15/56 (26%), Positives = 23/56 (41%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
           AA  G     K L+   A+ + TD+  R P  +A  R + DI   L  +    +  
Sbjct: 197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  147 bits (375), Expect = 3e-43
 Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 5/180 (2%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA  G +     L++AGA+++    D R+PL  A    + +   +LI+ G  ++ KD  G
Sbjct: 18  AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG 77

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF----LCIAVARGDSDLLKRVLSNGVD 238
           +T L  A K GH  V   L+  G   +V+         +  A      DL+K +LS G D
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQM-DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD 136

Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            N RD +    LH AA  G   +A++LL A   +   +  G++PL         + + L 
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  137 bits (347), Expect = 4e-39
 Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 3/162 (1%)

Query: 140 ADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTS 199
            +      + RSPLH A   G+ DI   L+Q G +I+   +   TPL+EA +  H     
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 200 LLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLHVAASE 256
            L+K GA ++  DA     L +A  +G  ++++ +LSNG +D N +D    TP+  A   
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 257 GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
               + KLLL  G+ +  +D   N  L      G  ++ ++L
Sbjct: 122 KHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  130 bits (330), Expect = 2e-36
 Identities = 43/177 (24%), Positives = 66/177 (37%), Gaps = 32/177 (18%)

Query: 123 AAYHGDLYQLKGLIRAGA-DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
           AA  G    ++ L+  G  D+N  D  G +P+  AT   + D+   L+ KG DINI+D  
Sbjct: 84  AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE 143

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 241
            N  L  A   G   +  +L                               L+   D ++
Sbjct: 144 ENICLHWAAFSGCVDIAEIL-------------------------------LAAKCDLHA 172

Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            +    +PLH+AA E  Y    L L   + V  K++ G TPL    +         +
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  111 bits (280), Expect = 3e-29
 Identities = 29/148 (19%), Positives = 49/148 (33%), Gaps = 31/148 (20%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A  +  +  +K L+  G+D+N  D +    LH A   G  DI   L+    D++  +  G
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG 177

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
           ++PL  A +        L                                LS   D   +
Sbjct: 178 DSPLHIAARENRYDCVVLF-------------------------------LSRDSDVTLK 206

Query: 243 DYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           + +  TPL  A+       A  + +A  
Sbjct: 207 NKEGETPLQCASLNSQVWSALQMSKALQ 234

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  144 bits (366), Expect = 2e-42
 Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 11/186 (5%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A         + L      +++ D +G +PL++A      +I   LI +G DIN+++   
Sbjct: 13  ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSIS 72

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF----LCIAVARGDSDLLKRVLSNG-V 237
           ++P L A   G   + + ++K     +++    +    L  A  +G  D +K +L +G  
Sbjct: 73  DSPYLYAGAQGRTEILAYMLKHATP-DLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE 131

Query: 238 DPNSRDYDHRTPLHVAASEGLYL-----MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK 292
           D + ++    T L  A            + KLL+E GA    KD  G T +D     G  
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191

Query: 293 NLIKLL 298
            + K+L
Sbjct: 192 EISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  124 bits (314), Expect = 1e-34
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 4/142 (2%)

Query: 146 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG 205
            Y+  + L  A  R  + +   L      ++  D  GNTPL  A+      +   L+  G
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 206 ASLNVDDAGSF--LCIAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLHVAASEGLYLMA 262
           A +N+ ++ S      A A+G +++L  +L +   D N  +      L  AA +G     
Sbjct: 63  ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNV 122

Query: 263 KLLLEAG-ASVFTKDRWGNTPL 283
           KLLLE G   +  ++ +G T L
Sbjct: 123 KLLLEDGREDIDFQNDFGYTAL 144

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 99.1 bits (248), Expect = 5e-25
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 38/152 (25%)

Query: 123 AAYHGDLYQLKGLIRAGA-DLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDK 180
           A   G    L  +++    DLNK +  G + L  A  +G+ D    L++ G  DI+ ++ 
Sbjct: 79  AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138

Query: 181 FGNTPLLEAIKC-----GHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSN 235
           FG T L+EA+        +  +  LL                               + N
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLL-------------------------------MEN 167

Query: 236 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 267
           G D + +D   RT +  A  +G   ++K+L +
Sbjct: 168 GADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 87.5 bits (218), Expect = 8e-21
 Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 3/125 (2%)

Query: 177 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLS 234
           +K       L  A +     V  +L      ++  D      L IAV   D ++ K ++ 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 235 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKN 293
            G D N ++    +P   A ++G   +   +L+     +   +R+G   L      G+ +
Sbjct: 61  RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120

Query: 294 LIKLL 298
            +KLL
Sbjct: 121 NVKLL 125

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  145 bits (369), Expect = 2e-42
 Identities = 46/192 (23%), Positives = 79/192 (41%), Gaps = 11/192 (5%)

Query: 116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 175
           LA+     A   ++ +   +    A LN  +   ++PLHLA      +I   L+  G D 
Sbjct: 14  LAIIHEEKALTMEVIRQ--VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 71

Query: 176 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA------SLNVDDAGSF--LCIAVARGDSD 227
            ++D  GNTPL  A + G      +L +          L   +      L +A   G   
Sbjct: 72  ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG 131

Query: 228 LLKRVLSNGVDPNSRD-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG 286
           +++ ++S G D N+++  + RT LH+A       +  LLL+ GA V      G +P    
Sbjct: 132 IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 191

Query: 287 RMCGNKNLIKLL 298
               +  + + L
Sbjct: 192 WGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  132 bits (335), Expect = 3e-37
 Identities = 39/171 (22%), Positives = 61/171 (35%), Gaps = 9/171 (5%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK------GVDIN 176
           A         + L+ AG D    D+ G +PLHLA  +G       L Q          + 
Sbjct: 52  AVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK 111

Query: 177 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF---LCIAVARGDSDLLKRVL 233
             +  G+T L  A   G+ G+  LLV  GA +N  +  +    L +AV   + DL+  +L
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171

Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 284
             G D N   Y   +P  +        + + L +                 
Sbjct: 172 KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 222

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 83.4 bits (207), Expect = 5e-19
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 12/133 (9%)

Query: 178 KDKFGNTPLLEAIKCGHDGVTS----LLVKEGASLNV-DDAGSF-LCIAVARGDSDLLKR 231
             + G++ L  AI      +T      +  + A LN  ++     L +AV     ++ + 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 232 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT------KDRWGNTPLDE 285
           +L  G DP  RD+   TPLH+A  +G      +L ++  +          +  G+T L  
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

Query: 286 GRMCGNKNLIKLL 298
             + G   +++LL
Sbjct: 124 ASIHGYLGIVELL 136

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 69.9 bits (172), Expect = 4e-14
 Identities = 16/76 (21%), Positives = 25/76 (32%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A    +   +  L++ GAD+N+  Y G SP  L   R    I   L Q  ++        
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 217

Query: 183 NTPLLEAIKCGHDGVT 198
                   +      T
Sbjct: 218 EDEESYDTESEFTEFT 233

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  142 bits (362), Expect = 3e-42
 Identities = 35/157 (22%), Positives = 62/157 (39%), Gaps = 2/157 (1%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
            A  G++  L   I     +N TD +G +PL  A + G   +  FL+Q G D  +  K  
Sbjct: 10  LAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR 69

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 240
            + L  A   G+  +  +L+  G  +N  D      L  AV       +K +L +G DP 
Sbjct: 70  ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129

Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 277
                    + +A + G   + +++      +    +
Sbjct: 130 IETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  134 bits (340), Expect = 6e-39
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 2/156 (1%)

Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 207
                +H   ++G        I++   IN  D+ G TPL+ A   G   V   L++ GA 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 208 LNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265
             +   G    L +A ++G +D++K +L  GVD N  D++  TPL  A         K+L
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121

Query: 266 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301
           LE+GA    +   G   +D     G +++ +++E  
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  107 bits (269), Expect = 2e-28
 Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 2/125 (1%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA HG +  ++ L++ GAD         S L LA S+GY DI   L+  GVD+N  D  G
Sbjct: 43  AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 102

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 240
            TPLL A+   H     +L++ GA   ++    +  + +AVA G   + + + S+ +   
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162

Query: 241 SRDYD 245
               +
Sbjct: 163 QNIKE 167

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  145 bits (369), Expect = 1e-41
 Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 4/176 (2%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A    ++  +K L+  GA++N+ D +G  PLH A S GY DI  +LI +G  +   +  G
Sbjct: 80  ACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEG 139

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
           +TPL  A +   + +    V     ++++ A             D  + + S  ++    
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQG-VDIEAA---RKEEERIMLRDARQWLNSGHINDVRH 195

Query: 243 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
                T LHVAA++G   + KLL++A   V  KD  G TPL      G +   ++L
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  132 bits (335), Expect = 1e-36
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 8/178 (4%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A   GD  ++  L+  GAD+N  + DG + LH A      D+  FL++ G +IN  D  G
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 240
             PL  A  CG+  +   L+ +GA +   ++     L IA      +LL+  ++      
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ---- 162

Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
               D            L    + L     +     + G T L      G   ++KLL
Sbjct: 163 --GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  129 bits (327), Expect = 2e-35
 Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 10/181 (5%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKF 181
           AA  G L   + LI  GA +   + +G +PL +A     E++    + ++GVDI    K 
Sbjct: 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE 172

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 239
                              L     +           L +A A+G +++LK ++    D 
Sbjct: 173 EERI-------MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV 225

Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
           N +DYD  TPLH AA  G     ++L+E    +   ++ G T  D         L +L +
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

Query: 300 D 300
            
Sbjct: 286 K 286

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  124 bits (313), Expect = 2e-33
 Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 3/159 (1%)

Query: 142 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 201
           +   D   +    L    G E      + K     +K   G    L A   G       L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59

Query: 202 VKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLY 259
           ++ GA +N  +      L  A    + D++K ++ NG + N  D +   PLH AAS G  
Sbjct: 60  LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL 119

Query: 260 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            +A+ L+  GA V   +  G+TPLD       + L++  
Sbjct: 120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  123 bits (311), Expect = 3e-33
 Identities = 37/178 (20%), Positives = 68/178 (38%), Gaps = 9/178 (5%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
             + G    L+  +           DG      A S G  +  L L+++G DIN  +  G
Sbjct: 15  KRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLERGADINYANVDG 73

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 240
            T L +A    +  +   LV+ GA++N  D   +  L  A + G  D+ + ++S G    
Sbjct: 74  LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133

Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           + + +  TPL +A  E +  + +  +         D        E      ++  + L
Sbjct: 134 AVNSEGDTPLDIAEEEAMEELLQNEVNRQG----VD--IEAARKEEERIMLRDARQWL 185

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  112 bits (284), Expect = 3e-29
 Identities = 33/174 (18%), Positives = 58/174 (33%), Gaps = 35/174 (20%)

Query: 105 ITFHIGKHEAEL--ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYE 162
           +   + +   ++  A +        D  Q   L     +  +    G + LH+A ++GY 
Sbjct: 155 LQNEVNRQGVDIEAARKEEERIMLRDARQW--LNSGHINDVRHAKSGGTALHVAAAKGYT 212

Query: 163 DITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVA 222
           ++   LIQ   D+NIKD  G TPL  A   G +    +L                     
Sbjct: 213 EVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL--------------------- 251

Query: 223 RGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 276
                     + N  D  + +   +T   VA  + L  + +L  +       K 
Sbjct: 252 ----------VENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKR 295

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  107 bits (270), Expect = 2e-27
 Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 15/162 (9%)

Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSFLCIAVARGDSDLLKRVL 233
           + + D             G +      V +     V  D G+    A + GD++ + R+L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
             G D N  + D  T LH A  +    M K L+E GA++   D  G  PL     CG  +
Sbjct: 61  ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD 120

Query: 294 LIKLL------EDAK----CTQLSEFHYCSQ-GMIGIAENLL 324
           + + L        A      T L       +  M  + +N +
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPL---DIAEEEAMEELLQNEV 159

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  144 bits (365), Expect = 3e-41
 Identities = 51/193 (26%), Positives = 76/193 (39%), Gaps = 17/193 (8%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A        ++ L+R GAD      +G +P  LA   G   +    + KG D+N  D +G
Sbjct: 46  AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF------------LCIAVARGDSDLLK 230
            T  +EA   G       L K GA++N+                  L  A  +G  ++LK
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

Query: 231 RVLSN-GVDPNSRDYDHRTPLHVAASEG----LYLMAKLLLEAGASVFTKDRWGNTPLDE 285
            +L   G D N+ D   R  L  A        +  +  LLL+ GA V  +   G TPL  
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225

Query: 286 GRMCGNKNLIKLL 298
                +  L++ L
Sbjct: 226 AVEKKHLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  136 bits (345), Expect = 3e-38
 Identities = 54/197 (27%), Positives = 79/197 (40%), Gaps = 18/197 (9%)

Query: 120 FNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
              A  + D+  ++ L+  GA++N + +  G +PLH A     EDI   L++ G D  ++
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNG 236
            K G TP L A   G   +  L + +GA +N  D   F     A   G    LK +   G
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128

Query: 237 VDPNSRDYDH----------RTPLHVAASEGLYLMAKLLL-EAGASVFTKDRWGNTPL-- 283
            + N R               T L  AA +G   + K+LL E GA V   D  G   L  
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188

Query: 284 --DEGRMCGNKNLIKLL 298
                     + +  LL
Sbjct: 189 ALLSSDDSDVEAITHLL 205

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  122 bits (308), Expect = 7e-33
 Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 13/166 (7%)

Query: 146 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK-FGNTPLLEAIKCGHDGVTSLLVKE 204
             +    L  A      D+   L++ G ++N +++  G TPL  A++   + +  LL++ 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 205 GASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMA 262
           GA   +          +A   G   LLK  LS G D N  D+   T    AA  G     
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121

Query: 263 KLLLEAGASVFTKD----------RWGNTPLDEGRMCGNKNLIKLL 298
           K L + GA+V  +           + G T L +    G+  ++K+L
Sbjct: 122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  107 bits (270), Expect = 2e-27
 Identities = 44/159 (27%), Positives = 65/159 (40%), Gaps = 35/159 (22%)

Query: 123 AAYHGDLYQLKGLI-RAGADLNKTDYDGRSPLHLATSRG----YEDITLFLIQKGVDINI 177
           AA  G +  LK L+   GAD+N  D  GR+ L  A         E IT  L+  G D+N+
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214

Query: 178 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGV 237
           + + G TPL+ A++  H G+   L+                                  +
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLL------------------------------EQEHI 244

Query: 238 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 276
           + N  D D +T L +A    L  +A+LL + GAS    D
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  143 bits (363), Expect = 5e-41
 Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 20/196 (10%)

Query: 123 AAYHGDLYQLKGLIRAGAD---LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
           A  H     L  L+   A    L+  +  G++ LHLA   G       L   G  + + +
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF----------------LCIAVAR 223
           + G+T L  A +        +L++   S   D + ++                   +   
Sbjct: 76  RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135

Query: 224 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR-WGNTP 282
            +++   R     +   + +YD  TPLHVA       M +LL +AGA +   +   G TP
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

Query: 283 LDEGRMCGNKNLIKLL 298
           L         ++++LL
Sbjct: 196 LHLAVEAQAASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  129 bits (328), Expect = 8e-36
 Identities = 35/179 (19%), Positives = 58/179 (32%), Gaps = 17/179 (9%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSP--------------LHLATSRGYEDITLFL 168
           A           L++      +   D                     +      +     
Sbjct: 85  ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144

Query: 169 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF---LCIAVARGD 225
               + +  ++  G+TPL  A+      +  LL   GA LN  +       L +AV    
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204

Query: 226 SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 284
           + +L+ +L  G DP +R Y  RTPL  A      ++A+LL   GA          +P  
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCS 263

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  106 bits (266), Expect = 7e-27
 Identities = 33/146 (22%), Positives = 49/146 (33%), Gaps = 32/146 (21%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYD-GRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
           A  H D   ++ L  AGADLNK +   GR+PLHLA       +   L++ G D   +   
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG 224

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 241
           G TPL  A+   +  +  LL                                ++G     
Sbjct: 225 GRTPLGSALLRPNPILARLL-------------------------------RAHGAPEPE 253

Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLE 267
              D  +P   + S+          E
Sbjct: 254 DGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  103 bits (260), Expect = 5e-26
 Identities = 24/164 (14%), Positives = 42/164 (25%), Gaps = 34/164 (20%)

Query: 142 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD---INIKDKFGNTPLLEAIKCGHDGVT 198
                 DG + LHLA    +E    FL+        +++++  G T L  A   G     
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 199 SLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL 258
             L                                + G      +    T LH+A     
Sbjct: 62  EKL-------------------------------YAAGAGVLVAERGGHTALHLACRVRA 90

Query: 259 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 302
           +  A +LL+   S             +       +    ++   
Sbjct: 91  HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  141 bits (357), Expect = 9e-41
 Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 9/211 (4%)

Query: 123 AAYHGDLYQL-KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
            AY G L +L + ++   +   +TD D R+ LH A S G+ +I  FL+Q GV +N KD  
Sbjct: 13  LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 239
           G +PL  A   G D +   L+ +GA +N  +      L  A ++   ++   +L  G +P
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132

Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL- 298
           +++D+   T +H AA++G   M  +LL   AS   +D  GNTPL            K L 
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV 192

Query: 299 -----EDAKCTQLSEFHYCSQGMIGIAENLL 324
                   +  +       ++G +G+    L
Sbjct: 193 TQGASIYIENKEEKTPLQVAKGGLGLILKRL 223

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  118 bits (296), Expect = 9e-32
 Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 2/153 (1%)

Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 207
                 +LA S   +++   ++         D+   T L  A   GH  +   L++ G  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 208 LNV-DDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265
           +N  DDAG S L IA + G  +++K +L  G   N+ + +  TPLH AAS+  + +A +L
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

Query: 266 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           LE GA+   KD +  T +      GN  ++ +L
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  108 bits (272), Expect = 2e-28
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 4/152 (2%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA  G    +K L+  GA +N  + +G +PLH A S+   +I + L++ G + + KD + 
Sbjct: 80  AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYD 139

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 240
            T +  A   G+  +  +L+   AS N+ D      L +A      +  K +++ G    
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIY 199

Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
             + + +TPL VA   G   +    L  G   
Sbjct: 200 IENKEEKTPLQVAK--GGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 86.8 bits (215), Expect = 3e-20
 Identities = 30/121 (24%), Positives = 54/121 (44%)

Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
            + AA          L+  GA+ +  D+   + +H A ++G   +   L+      NI+D
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169

Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDP 239
             GNTPL  A           LV +GAS+ +++      + VA+G   L+ + L+ G + 
Sbjct: 170 TEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA 229

Query: 240 N 240
           +
Sbjct: 230 S 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.5 bits (170), Expect = 4e-14
 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
            + AA  G+L  +  L+   A  N  D +G +PLHLA      +   FL+ +G  I I++
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202

Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
           K   TPL  A   G  G+    + EG   ++
Sbjct: 203 KEEKTPLQVA--KGGLGLILKRLAEGEEASM 231

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  144 bits (366), Expect = 1e-40
 Identities = 43/194 (22%), Positives = 70/194 (36%), Gaps = 7/194 (3%)

Query: 135 LIRAGADLNKTDYDGRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 193
           L    A    T    +  L  A   G  E +   L    V+ +  D   +TPL  A    
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69

Query: 194 HDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH 251
              +  LL++ GA ++  D G    L  A + G  ++ + +L +G   N+ D    TPLH
Sbjct: 70  RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH 129

Query: 252 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHY 311
            AAS+    +  LLL  GA     +  G + +D       +  +           S    
Sbjct: 130 EAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH----SLLQA 185

Query: 312 CSQGMIGIAENLLL 325
             +  +   +  L 
Sbjct: 186 AREADLAKVKKTLA 199

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  137 bits (348), Expect = 5e-38
 Identities = 51/203 (25%), Positives = 78/203 (38%), Gaps = 27/203 (13%)

Query: 123 AAYHGDLYQL-KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
           AA  G+  +L   L     + + +D    +PLHLA       I   L+Q G D++ KDK 
Sbjct: 31  AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG 90

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 239
           G  PL  A   GH  VT LL+K GA +N  D   F  L  A ++   ++   +LS+G DP
Sbjct: 91  GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150

Query: 240 NSRDYDHRTPLHVAASEGLYLMAKL---------------------LLEAGASVFTKDRW 278
              +   ++ + +A +  L                            L      F + + 
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210

Query: 279 GNTPL---DEGRMCGNKNLIKLL 298
             T L           K + +LL
Sbjct: 211 HETALHCAVASLHPKRKQVAELL 233

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  124 bits (315), Expect = 2e-33
 Identities = 40/180 (22%), Positives = 64/180 (35%), Gaps = 38/180 (21%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYE---DITLFLIQKGVDINIKD 179
           AA   DL ++K  +       K      + LH A +  +     +   L++KG ++N K+
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244

Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDP 239
           K   TPL  A +  H+ V  +L                                 +G   
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVL-------------------------------HKHGAKM 273

Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
           N+ D   +T LH AA  G     +LLL  G+        G T        GN+ + ++L 
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAA----QMGNEAVQQILS 329

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  117 bits (296), Expect = 1e-30
 Identities = 37/172 (21%), Positives = 57/172 (33%), Gaps = 41/172 (23%)

Query: 123 AAYHGDLYQL---KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
           A       +    + L+R GA++N+ + D  +PLH+A  R + D+   L + G  +N  D
Sbjct: 218 AVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277

Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDP 239
             G T L  A   GH     LL                               LS G DP
Sbjct: 278 SLGQTALHRAALAGHLQTCRLL-------------------------------LSYGSDP 306

Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN 291
           +       T   +          + +L     + T D   +  L E    G+
Sbjct: 307 SIISLQGFTAAQMGN-----EAVQQILSESTPMRTSD--VDYRLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  111 bits (279), Expect = 3e-28
 Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 16/154 (10%)

Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH-DGVTSLLVKEGA 206
            G+S L L                     +  ++    LLEA + G+ + + +LL     
Sbjct: 3   FGKSALDL-------------ADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNV 49

Query: 207 SLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKL 264
           + +  D      L +A       +++ +L +G D +++D     PLH A S G Y + +L
Sbjct: 50  NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTEL 109

Query: 265 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           LL+ GA V   D W  TPL E        +  LL
Sbjct: 110 LLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  137 bits (348), Expect = 8e-40
 Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 4/174 (2%)

Query: 133 KGLIRAGADL--NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 190
           +  I    D   N  D   R+PL +A   G E+    L++    +  KD  G+T L+ A+
Sbjct: 17  EKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAV 76

Query: 191 KCGHDGVTSLLVKEGASLNV-DDAGSF-LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRT 248
           K    G+   L+ +G+++N  D +G   L  ++  G S++   +L +G + N R+ +  T
Sbjct: 77  KNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGET 136

Query: 249 PLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 302
           PL VA+  G   + K LLE GA +  +D  G T     R+ G + +IK+  + +
Sbjct: 137 PLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  107 bits (271), Expect = 2e-28
 Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 11/162 (6%)

Query: 139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 198
           G+ ++K   +G     +   +       FL       N +D +  TPL+ A   G +   
Sbjct: 1   GSHMDK---NGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAI 51

Query: 199 SLLVKEGASLNV-DDAGSF-LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASE 256
             LV+    L   D  GS  L  AV      + +++LS G + N++D+  +TPL  +   
Sbjct: 52  DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF 111

Query: 257 GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           G   M+  LLE GA+V  ++  G TPL      G   ++K L
Sbjct: 112 GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  139 bits (353), Expect = 2e-39
 Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 10/179 (5%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA   D   +K L+ +G D ++ D  G + L+ A   G        ++K   +    K G
Sbjct: 69  AATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG 128

Query: 183 -NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCIAVARGDSDLLKRVLSNGVDPN 240
             T    A+      + S  + E  S          + I +  G  D++  +L      N
Sbjct: 129 WKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTN 188

Query: 241 SRDYDHRTP-LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           + +     P + +A       M + L +   ++        +   E  +  +  + K++
Sbjct: 189 TNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI-------YSANLENVLLDDAEIAKMI 240

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  137 bits (348), Expect = 8e-39
 Identities = 41/180 (22%), Positives = 65/180 (36%), Gaps = 7/180 (3%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A    ++  +  L+ AGA  N    +   PLH A +     I   L+  G+D +  D  G
Sbjct: 38  AIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG 95

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF--LCIAVARGDSDLLKRVLSNGVDP 239
           NT L  A+  G+     L VK+   L      G       AV   D  ++   LS     
Sbjct: 96  NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS- 154

Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTP-LDEGRMCGNKNLIKLL 298
                   + +H+    G   M  LLL+   S  T +     P +       +  +++ L
Sbjct: 155 TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  130 bits (330), Expect = 4e-36
 Identities = 31/180 (17%), Positives = 55/180 (30%), Gaps = 7/180 (3%)

Query: 122 SAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
           S        QLK  +    D  K D  G S  + A +     +   L+  G   N+ +  
Sbjct: 5   SRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE-- 61

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 239
              PL +A       +  +L+  G   +  D      L  AV  G+   +K  +      
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121

Query: 240 NSRD-YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
                   +T  + A       +    L    S         + +      G+ +++ LL
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-FDLAILLSCIHITIKNGHVDMMILL 180

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  122 bits (309), Expect = 5e-33
 Identities = 22/165 (13%), Positives = 57/165 (34%), Gaps = 12/165 (7%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDG-RSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
           A   G++  +K  ++    L      G ++  + A       I  + + +          
Sbjct: 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-PSTFDLAI 160

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF---LCIAVARGDSDLLKRVLSNGVD 238
             + +   IK GH  +  LL+    S N +++  F   + +A+   D ++L+ +    ++
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN 220

Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
                    +            +AK+++E      +     +  +
Sbjct: 221 IY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  104 bits (261), Expect = 4e-26
 Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 7/133 (5%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A    D+  +   +              S +H+    G+ D+ + L+      N  +   
Sbjct: 136 AVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL 194

Query: 183 NTPLL-EAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 241
             P +  AI      +   L K     N+  A       V   D+++ K ++   V+  S
Sbjct: 195 FIPDIKLAIDNKDIEMLQALFKYDI--NIYSA---NLENVLLDDAEIAKMIIEKHVEYKS 249

Query: 242 RDYDHRTPLHVAA 254
             Y     +    
Sbjct: 250 DSYTKDLDIVKNN 262

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 75.3 bits (186), Expect = 1e-15
 Identities = 17/125 (13%), Positives = 39/125 (31%), Gaps = 14/125 (11%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSP-LHLATSRGYEDITLFLIQKGVDINIKDKF 181
              +G +  +  L+      N  +     P + LA      ++   L +  ++I      
Sbjct: 168 TIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY----- 222

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARG------DSDLLKRVLSN 235
             +  LE +      +  +++++      D     L I            +  L+ +  N
Sbjct: 223 --SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVN 280

Query: 236 GVDPN 240
            V  N
Sbjct: 281 CVKKN 285

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  136 bits (344), Expect = 2e-39
 Identities = 41/177 (23%), Positives = 66/177 (37%), Gaps = 32/177 (18%)

Query: 123 AAYHGDLYQLKGLIRAGA-DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
               G+   ++  +     DLN+ D  G SPLH A   G   +   LI +G  IN+ ++ 
Sbjct: 12  QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG 71

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 241
            +TPL  A   GH  +   L                               L    D N+
Sbjct: 72  DDTPLHLAASHGHRDIVQKL-------------------------------LQYKADINA 100

Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            +     PLH A   G   +A+ L+  GA V   +++G  P+D+ +    + L +  
Sbjct: 101 VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  117 bits (296), Expect = 3e-32
 Identities = 36/150 (24%), Positives = 56/150 (37%), Gaps = 31/150 (20%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A   G    ++ LI  GA +N  +    +PLHLA S G+ DI   L+Q   DIN  ++ G
Sbjct: 46  ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHG 105

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
           N PL  A   G D V   L                               ++NG   +  
Sbjct: 106 NVPLHYACFWGQDQVAEDL-------------------------------VANGALVSIC 134

Query: 243 DYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
           +     P+  A +    L+ +   + G ++
Sbjct: 135 NKYGEMPVDKAKAPLRELLRERAEKMGQNL 164

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  141 bits (357), Expect = 3e-39
 Identities = 44/193 (22%), Positives = 81/193 (41%), Gaps = 17/193 (8%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK---GVDINIKD 179
           A        +  L++AGAD    +   RS LH A +     + ++++       DI   D
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232

Query: 180 KFGNTPLLEAIKCGHDGVTS---LLVKEGASLNVDDAGSF----------LCIAVARGDS 226
           + G T L+           +   LLV++GA ++ D A             L  A    + 
Sbjct: 233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNM 292

Query: 227 DLLKRVLS-NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 285
            ++K ++   G + + +D D +TP+ +AA EG   +   L++ GASV   D   +T    
Sbjct: 293 PIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 352

Query: 286 GRMCGNKNLIKLL 298
            +   + N++ + 
Sbjct: 353 AQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  130 bits (330), Expect = 2e-35
 Identities = 46/201 (22%), Positives = 73/201 (36%), Gaps = 25/201 (12%)

Query: 123 AAYHGDL--------YQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 174
            A +           ++ K  I AGAD+N  D D  +PL LA       +  +L++ G D
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD 191

Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLV---KEGASLNVDDAGSF--LCIAVARGDSDLL 229
             I +K   + L +A      G+   ++   K    +   D      L I       D +
Sbjct: 192 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 251

Query: 230 KRV---LSNGVDPN--------SRDYDHRTPLHVAASEGLYLMAKLLL-EAGASVFTKDR 277
                 +  G   +        S  Y  RT LH AA      + K L+ E G++   +D 
Sbjct: 252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE 311

Query: 278 WGNTPLDEGRMCGNKNLIKLL 298
            G TP+      G   ++  L
Sbjct: 312 DGKTPIMLAAQEGRIEVVMYL 332

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  126 bits (320), Expect = 7e-34
 Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 10/179 (5%)

Query: 129 LYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE 188
           L +           N+  +    P       G + +  F           +      L  
Sbjct: 41  LLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHT 100

Query: 189 AIKCGHDGVTSLLVKEGASLNVDDAGS-FLCIAVARGD--------SDLLKRVLSNGVDP 239
               G   +T  + +E  ++         L    +               K  ++ G D 
Sbjct: 101 EAA-GSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 159

Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           N+ D D  TPL +A       +   L++AGA     ++   + L +     +  ++  +
Sbjct: 160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  125 bits (317), Expect = 2e-33
 Identities = 45/200 (22%), Positives = 73/200 (36%), Gaps = 25/200 (12%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI--------QKGVD 174
               G     + + R   ++    +  R+ LH   S    + +  LI          G D
Sbjct: 100 TEAAGSYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 158

Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRV 232
           +N  D   NTPL+ A+      + + L+K GA   + +      L  A A  D  ++  +
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 218

Query: 233 LSN---GVDPNSRDYDHRTPLHVAASEG---LYLMAKLLLEAGASV--------FTKDRW 278
           L++     D    D +  T L + A          AKLL+E GA V         ++   
Sbjct: 219 LNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 278

Query: 279 GNTPLDEGRMCGNKNLIKLL 298
           G T L       N  ++K L
Sbjct: 279 GRTALHYAAQVSNMPIVKYL 298

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  103 bits (260), Expect = 2e-25
 Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 43/160 (26%)

Query: 123 AAYHGDLYQL---KGLIRAGADLNKT--------DYDGRSPLHLATSRGYEDITLFLI-Q 170
            A++    Q+   K L+  GA ++           Y GR+ LH A       I  +L+ +
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 301

Query: 171 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLK 230
           KG + + +D+ G TP++ A + G   V   L                             
Sbjct: 302 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL----------------------------- 332

Query: 231 RVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
             +  G    + D    T   +A +   + +  +      
Sbjct: 333 --IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 93.5 bits (233), Expect = 9e-22
 Identities = 32/170 (18%), Positives = 53/170 (31%), Gaps = 21/170 (12%)

Query: 139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 198
               +++    +  L  A+  GY              N    +   P  +    G+D + 
Sbjct: 27  NRKNHQSITSSQHSLLEASYDGYIKR---------QRNELQHYSLYPNPQGYGNGNDFLG 77

Query: 199 SLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASE 256
                        +  S   L    A G   + + +    V+     ++ RT LH  AS 
Sbjct: 78  DFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVNIIDPRHN-RTVLHWIASN 135

Query: 257 G--------LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
                    +   AK  + AGA V   D   NTPL    +   + L+  L
Sbjct: 136 SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 185

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 71.1 bits (175), Expect = 5e-14
 Identities = 19/129 (14%), Positives = 37/129 (28%), Gaps = 9/129 (6%)

Query: 170 QKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLL 229
           +K    +         LLEA   G+       ++  +                 G+  L 
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYP-------NPQGYGNGNDFLG 77

Query: 230 KRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 289
               +N   P   + +    LH  A+ G Y + + +     ++    R   T L      
Sbjct: 78  DFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESVNI-IDPRHNRTVLHWIASN 135

Query: 290 GNKNLIKLL 298
            +    + L
Sbjct: 136 SSAEKSEDL 144

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI 175
           AA  G +  +  LI+ GA +   D    +   LA +  + +I     +   + 
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  132 bits (334), Expect = 2e-38
 Identities = 33/136 (24%), Positives = 53/136 (38%), Gaps = 4/136 (2%)

Query: 138 AGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 197
               ++       + L  A +RG  +    L++ G D N  ++FG  P+   +  G   V
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQV 59

Query: 198 TSLLVKEGASLNV-DDAG--SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 254
             LL+  GA  N  D A     +  A   G  D L  +   G   +  D   R P+ +A 
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119

Query: 255 SEGLYLMAKLLLEAGA 270
            +G   +A+ L  A  
Sbjct: 120 EQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 75.9 bits (188), Expect = 3e-17
 Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 33/128 (25%)

Query: 172 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKR 231
              I++     +  L  A   G       L                              
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQL------------------------------ 31

Query: 232 VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT-PLDEGRMCG 290
            L  G DPN+ +   R P+ V    G   +A+LLL  GA     D    T P+ +    G
Sbjct: 32  -LEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREG 89

Query: 291 NKNLIKLL 298
             + + +L
Sbjct: 90  FLDTLVVL 97

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 59.0 bits (144), Expect = 4e-11
 Identities = 22/52 (42%), Positives = 27/52 (51%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 174
           AA  G L  L  L RAGA L+  D  GR P+ LA  +G+ DI  +L     D
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  132 bits (334), Expect = 2e-38
 Identities = 48/161 (29%), Positives = 68/161 (42%), Gaps = 32/161 (19%)

Query: 139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 198
           G D    ++ G + LH+A+ +G      +L+Q G D N+KD  G TPL EA   GH  V 
Sbjct: 1   GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 199 SLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL 258
            LL++  A                                 N+  Y + +PLH AA  G 
Sbjct: 60  ELLLQHKA-------------------------------LVNTTGYQNDSPLHDAAKNGH 88

Query: 259 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
             + KLLL  GAS    + +G  P+D       K+L+ L E
Sbjct: 89  VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  115 bits (292), Expect = 4e-32
 Identities = 33/149 (22%), Positives = 58/149 (38%), Gaps = 31/149 (20%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A+  GD+  ++ L++ G+D N  D+ G +PLH A + G+  +   L+Q    +N      
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
           ++PL +A K GH  +  LL                               LS G   N+ 
Sbjct: 77  DSPLHDAAKNGHVDIVKLL-------------------------------LSYGASRNAV 105

Query: 243 DYDHRTPLHVAASEGLYLMAKLLLEAGAS 271
           +     P+     E +  +  L  +  +S
Sbjct: 106 NIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  134 bits (341), Expect = 2e-38
 Identities = 51/185 (27%), Positives = 85/185 (45%), Gaps = 9/185 (4%)

Query: 123 AAYHGDLYQL-KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI---K 178
           A    + +++ + L    + L + D DGR PLH + S    +IT FL+ K  ++N+    
Sbjct: 9   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68

Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF----LCIAVARGDSDLLKRVLS 234
           D  G TP   A   G+  V   L       +++   +     L +AV +   ++ + ++ 
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128

Query: 235 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKN 293
           NG     +D  ++ PLH AAS G   + +LL   G S V  +D+ G TPL      G+ +
Sbjct: 129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 188

Query: 294 LIKLL 298
              LL
Sbjct: 189 AAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  126 bits (320), Expect = 3e-35
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 149 GRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 207
              PLH A     +  +   L  K   +  KD+ G  PL  ++      +TS L+ +  +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 208 LNVDDAGSF-----LCIAVARGDSDLLKRVLSN--GVDPNSRDYDHRTPLHVAASEGLYL 260
           +N+DD           IA + G+ +++K +       D N       T LH+A  +  + 
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 261 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           +++ L+E GASV  KD++   PL      G+  LI+LL
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  121 bits (307), Expect = 3e-33
 Identities = 50/179 (27%), Positives = 67/179 (37%), Gaps = 36/179 (20%)

Query: 123 AAYHGDLYQLKGLI--RAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 180
           A   G+L  +K L       DLNK    G + LHLA  + + +++ FLI+ G  + IKDK
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

Query: 181 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPN 240
           F   PL  A   G   +  LL   G S                                N
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKS------------------------------AVN 168

Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEA-GASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            +D    TPL  A +EG    A LL+E  GA     D  G    D   +  N+ + K  
Sbjct: 169 WQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED---VALNEQVKKFF 224

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  132 bits (335), Expect = 5e-38
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 3/163 (1%)

Query: 139 GAD-LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 197
           G+   +    D    L  A   G +D    L+  G D+N +D  G TPL  A   GH  +
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI 62

Query: 198 TSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAAS 255
             +L+K GA +N  D      L +A   G  ++++ +L NG D N+ D +  TPLH+AA 
Sbjct: 63  VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM 122

Query: 256 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            G   + ++LL+ GA V  +D++G T  D     GN++L ++L
Sbjct: 123 FGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 50.8 bits (123), Expect = 5e-08
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK 171
           AA  G L  ++ L++ GAD+N  D  G++   ++   G ED+   L + 
Sbjct: 120 AAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  133 bits (337), Expect = 7e-38
 Identities = 30/164 (18%), Positives = 56/164 (34%), Gaps = 8/164 (4%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
               G        +     + +      +PLH A  RG        +   V +N  DK G
Sbjct: 52  GTSKGRT-----GLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAG 106

Query: 183 NTPLLEAIKCGHDGVTSLLVKE-GASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 239
           +T L  A   GH  +  +L  +    LN  +      L  A  +G +D+++ +L+ G   
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART 166

Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
           + R+ + +    +A +     + K      A     +       
Sbjct: 167 DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  123 bits (312), Expect = 3e-34
 Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 4/158 (2%)

Query: 142 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLL 201
             K    G+  +  A           L  +  DI       +T   +    G  G+    
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 202 VKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLM 261
                + ++D+    L  A  RG+   L+  L N V  N  D    T L+ A   G   +
Sbjct: 65  YVAEQAESIDNP---LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDI 121

Query: 262 AKLLL-EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            ++L  +    +  +++ G+T L      G  ++++LL
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  119 bits (300), Expect = 2e-32
 Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 3/138 (2%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKF 181
           AA  G+L  L+  +     +N  D  G + L+ A   G++DI   L  Q  +++N ++K 
Sbjct: 80  AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKL 139

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDP 239
           G+T L  A   G+  +  LL+ +GA  ++ +        +A     + LLK+        
Sbjct: 140 GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199

Query: 240 NSRDYDHRTPLHVAASEG 257
              + +       +  E 
Sbjct: 200 TLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 76.9 bits (190), Expect = 9e-17
 Identities = 9/72 (12%), Positives = 24/72 (33%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA+ G    ++ L+  GA  +  + + +    +AT+     +            + +   
Sbjct: 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206

Query: 183 NTPLLEAIKCGH 194
                ++    H
Sbjct: 207 YLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 12/89 (13%), Positives = 22/89 (24%), Gaps = 3/89 (3%)

Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           P       +  +  A           L      +       +T   +G   G   LI   
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64

Query: 299 EDAKCTQ--LSEFHY-CSQGMIGIAENLL 324
             A+  +   +  H    +G +      L
Sbjct: 65  YVAEQAESIDNPLHEAAKRGNLSWLRECL 93

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  133 bits (336), Expect = 1e-37
 Identities = 38/193 (19%), Positives = 65/193 (33%), Gaps = 11/193 (5%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA  G+L  ++  ++   D ++ + +G + LH A       I  FLI  G ++N  D  G
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHG 87

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS-----FLCIAVARGDSDLLKRVLSNGV 237
            TPL  A  C    +   LV+ GA++              C     G +D    +     
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ 147

Query: 238 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK----- 292
                +      L   ++E    +         +V  +D    T      + G +     
Sbjct: 148 SMGLMNSGAVYALWDYSAEFGDEL-SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR 206

Query: 293 NLIKLLEDAKCTQ 305
           N   L    K  +
Sbjct: 207 NYFGLFPRVKPQR 219

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  121 bits (305), Expect = 4e-33
 Identities = 28/159 (17%), Positives = 57/159 (35%), Gaps = 8/159 (5%)

Query: 133 KGLIRAGADLNKTD---YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA 189
           + ++R      K      +    L  A   G  ++    +++  D +  ++ G T L  A
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61

Query: 190 IKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRD-YDH 246
           I   +  +   L+  GA++N  D+  +  L  A +  D+ +   ++ +G    +    D 
Sbjct: 62  ICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDG 121

Query: 247 RTPLHVAAS--EGLYLMAKLLLEAGASVFTKDRWGNTPL 283
            T         EG    A  L +   S+   +      L
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL 160

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 66.5 bits (163), Expect = 5e-13
 Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 1/81 (1%)

Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 176
           A         G       L      +   +      L    S  + D   F   + V + 
Sbjct: 124 AFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY-SAEFGDELSFREGESVTVL 182

Query: 177 IKDKFGNTPLLEAIKCGHDGV 197
            +D    T    A   G +G 
Sbjct: 183 RRDGPEETDWWWAALHGQEGY 203

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  129 bits (328), Expect = 2e-37
 Identities = 48/177 (27%), Positives = 75/177 (42%), Gaps = 32/177 (18%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA  G   +++ L+  GA     D+ G SPLHLA   G+   T  L++ GV  + + K  
Sbjct: 9   AARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
            TPL  A   GH  +  +L                               L +G D N++
Sbjct: 68  RTPLHMAASEGHANIVEVL-------------------------------LKHGADVNAK 96

Query: 243 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
           D    T LH A       + +LL++ GA V T+ ++  T  D     GN++L ++L+
Sbjct: 97  DMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  127 bits (321), Expect = 4e-36
 Identities = 43/177 (24%), Positives = 73/177 (41%), Gaps = 33/177 (18%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA  GDL QL  L++   ++N  +  GR+ L +    G  +I   L+ +G + ++KD+ G
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTG 70

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
              + +A + G       L                               L    D N  
Sbjct: 71  FAVIHDAARAGFLDTLQTL-------------------------------LEFQADVNIE 99

Query: 243 DYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           D +   PLH+AA EG   + + L++  AS V  ++  G+T  D  R+ G   ++ L+
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  107 bits (270), Expect = 1e-28
 Identities = 35/136 (25%), Positives = 51/136 (37%), Gaps = 30/136 (22%)

Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
           L+  GA+ +  D  G + +H A   G+ D    L++   D+NI+D  GN PL  A K GH
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115

Query: 195 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 254
             V   LVK  AS                              +   R++   T   +A 
Sbjct: 116 LRVVEFLVKHTAS------------------------------NVGHRNHKGDTACDLAR 145

Query: 255 SEGLYLMAKLLLEAGA 270
             G   +  L+   GA
Sbjct: 146 LYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 87.1 bits (217), Expect = 5e-21
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKF 181
           AA  G L  L+ L+   AD+N  D +G  PLHLA   G+  +  FL++    ++  ++  
Sbjct: 77  AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGA 206
           G+T    A   G + V SL+   GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 64.7 bits (159), Expect = 6e-13
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 211 DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           +  G+ L  A ARGD + L  +L N V+ N+++   RT L      G   +A+ LL  GA
Sbjct: 3   EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGA 61

Query: 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           +   KDR G   + +    G  + ++ L
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTL 89

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  126 bits (320), Expect = 5e-36
 Identities = 40/177 (22%), Positives = 72/177 (40%), Gaps = 34/177 (19%)

Query: 123 AAYHGDLYQLKGLI-RAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
           AA  GD+ +++ L+ R     +  +  G++ L +    G   I L L+++G   N++D  
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNVQDTS 67

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 241
           G +P+ +A + G      +LV+ GA                               D N 
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGA-------------------------------DVNV 96

Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            D     P+H+A  EG   +   L    + +  +D  G TPL+     G ++L+ +L
Sbjct: 97  PDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  105 bits (264), Expect = 7e-28
 Identities = 34/133 (25%), Positives = 49/133 (36%), Gaps = 32/133 (24%)

Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
           L++ GA  N  D  G SP+H A   G+ D    L++ G D+N+ D  G  P+  A++ GH
Sbjct: 54  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113

Query: 195 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 254
             V S L                                    D + RD    TPL +A 
Sbjct: 114 TAVVSFLAA--------------------------------ESDLHRRDARGLTPLELAL 141

Query: 255 SEGLYLMAKLLLE 267
             G   +  +L  
Sbjct: 142 QRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 85.9 bits (214), Expect = 1e-20
 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 4/120 (3%)

Query: 182 GNTPLLEAIKCGH-DGVTSLLVKEGASLN-VDDAGSF-LCIAVARGDSDLLKRVLSNGVD 238
               L  A   G    V  LL +E    + ++  G   L +    G + +   +L  G  
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGAS 60

Query: 239 PNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           PN +D    +P+H AA  G     K+L+E GA V   D  G  P+      G+  ++  L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 84.0 bits (209), Expect = 7e-20
 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA  G L  LK L+  GAD+N  D  G  P+HLA   G+  +  FL     D++ +D  G
Sbjct: 75  AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARG 133

Query: 183 NTPLLEAIKCGHDGVTSLLVK 203
            TPL  A++ G   +  +L  
Sbjct: 134 LTPLELALQRGAQDLVDILQG 154

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  124 bits (314), Expect = 5e-35
 Identities = 36/191 (18%), Positives = 64/191 (33%), Gaps = 37/191 (19%)

Query: 122 SAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLA----TSRGYEDITLFLIQKGVDINI 177
           +AA  G       L   G +  +      + L+             I++FLI KG DI  
Sbjct: 12  AAAMLGTYEDFLELFEKGYEDKE-SVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70

Query: 178 KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGV 237
           + K G T      + G + +T                         G ++L K  L  G 
Sbjct: 71  RTKEGTTLFFPLFQGGGNDIT-------------------------GTTELCKIFLEKGA 105

Query: 238 DPNSRDYDHRTPLHVAASEGLYLMAK-------LLLEAGASVFTKDRWGNTPLDEGRMCG 290
           D  +    ++  +            +       +  ++G  +  KD+WG T L+  + C 
Sbjct: 106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQ 165

Query: 291 NKNLIKLLEDA 301
               +K++ED 
Sbjct: 166 KPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  108 bits (271), Expect = 1e-28
 Identities = 26/144 (18%), Positives = 41/144 (28%), Gaps = 17/144 (11%)

Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITL------FLIQ 170
            LR N+      +     LI  GAD+     +G +        G  DIT         ++
Sbjct: 45  VLRNNNDEARYKISMF--LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE 102

Query: 171 KGVDINIKDKFGNTPLLEAIKCGHDG-------VTSLLVKEGASLNVDDAGSF--LCIAV 221
           KG DI    K     + + I                +  + G  L + D      L    
Sbjct: 103 KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK 162

Query: 222 ARGDSDLLKRVLSNGVDPNSRDYD 245
                  LK +       N ++  
Sbjct: 163 RCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 92.8 bits (231), Expect = 7e-23
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 7/104 (6%)

Query: 116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDIT-------LFL 168
              +       G     K  +  GAD+       +  +       + D         L  
Sbjct: 81  PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF 140

Query: 169 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD 212
            Q G+ + IKDK+G T L    +C       ++       N+ +
Sbjct: 141 SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 84.7 bits (210), Expect = 6e-20
 Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 13/138 (9%)

Query: 176 NIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS-FLCIAVARGDSDLLKRV-- 232
           N   ++    +  A   G       L ++G         S  L   +   + +   ++  
Sbjct: 2   NAMSEY--RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISM 59

Query: 233 --LSNGVDPNSRDYDHRTPLHVAASEG------LYLMAKLLLEAGASVFTKDRWGNTPLD 284
             ++ G D  SR  +  T        G         + K+ LE GA +    +     + 
Sbjct: 60  FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF 119

Query: 285 EGRMCGNKNLIKLLEDAK 302
           +       +  +++   K
Sbjct: 120 KNIFNYFVDENEMIPLYK 137

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  126 bits (318), Expect = 9e-35
 Identities = 34/189 (17%), Positives = 66/189 (34%), Gaps = 10/189 (5%)

Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDIN 176
           A+ +      G            AD+     +  +P   A  +  E     L++   D++
Sbjct: 16  AMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLLE-DRDVD 71

Query: 177 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF---LCIAVARGDSDLLKRVL 233
             D+ G T LL     G D    LL + GA L+  D       L +A      ++++ ++
Sbjct: 72  AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV 131

Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKN 293
             G D    D    T L +A            ++ G  +  +       + EG++     
Sbjct: 132 ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK---VINVLEGQVFEYAE 188

Query: 294 LIKLLEDAK 302
           + +++E   
Sbjct: 189 VDEIVEKRG 197

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  112 bits (282), Expect = 1e-29
 Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 7/159 (4%)

Query: 143 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 202
           ++T  +G     +    G+    +       D+  +     TP   A +   +   S L+
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQLL 65

Query: 203 KEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRD-YDHRTPLHVAASEGLY 259
            E   ++  D      L      G    ++ +   G D + RD     T LH+AA     
Sbjct: 66  -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124

Query: 260 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            + + L+E GA +  +D  G T L+  R           
Sbjct: 125 EVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  112 bits (282), Expect = 2e-29
 Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 12/162 (7%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
            A  G    ++ L  AGADL+  D   G + LH+A      ++   L++ G DI ++D+ 
Sbjct: 84  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER 143

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 241
           G T L  A +          ++ G  + ++   + L   V            +   +   
Sbjct: 144 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEY---------AEVDEIVE 194

Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
           +    +   ++   +       +     A    KD      L
Sbjct: 195 KRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGL 234

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 82.3 bits (204), Expect = 2e-18
 Identities = 30/126 (23%), Positives = 42/126 (33%), Gaps = 5/126 (3%)

Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCIAVARGDSDLLKRVL 233
            +     G    L   K GH           A  +V          A  + D   L   L
Sbjct: 8   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DVVSEYETPWWTAARKADEQALS-QL 64

Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD-RWGNTPLDEGRMCGNK 292
               D ++ D + RT L   A  G     +LL EAGA +  +D R G T L         
Sbjct: 65  LEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP 124

Query: 293 NLIKLL 298
            +++ L
Sbjct: 125 EVVEAL 130

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 23/117 (19%), Positives = 30/117 (25%), Gaps = 21/117 (17%)

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 241
           G    +   +   +G    L                 I    G S           D  S
Sbjct: 1   GEVNKIIGSRTAGEGAMEYL-----------------IEWKDGHSPSWVPSSYIAADVVS 43

Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
                 TP   AA +        LLE    V   D  G T L      G+   ++LL
Sbjct: 44  EY---ETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLL 96

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 10/78 (12%), Positives = 18/78 (23%), Gaps = 2/78 (2%)

Query: 119 RFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
           R         L           ++ +    G+   +L   +   D          +   K
Sbjct: 169 RIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAK 228

Query: 179 DKFGNTPLLEAIKCGHDG 196
           D      L  A+     G
Sbjct: 229 DY--EDGLEYAVAESVIG 244

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  124 bits (313), Expect = 1e-34
 Identities = 35/182 (19%), Positives = 60/182 (32%), Gaps = 24/182 (13%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
               G            AD+     +  +P   A  +  E     L+ +  D++  D+ G
Sbjct: 21  EWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL-EDRDVDAVDENG 76

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSF--LCIAVARGDSDLLKRVLSNGVDP 239
            T LL     G D    LL + GA L+  D  G    L +A      ++++ ++  G D 
Sbjct: 77  RTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 136

Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
              D    T L +A            ++ G  +                 G + +I +LE
Sbjct: 137 EVEDERGLTALELAREILKTTPKGNPMQFGRRI-----------------GLEKVINVLE 179

Query: 300 DA 301
             
Sbjct: 180 GQ 181

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  115 bits (290), Expect = 2e-31
 Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 7/163 (4%)

Query: 139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 198
               ++T  +G     +    G+    +       D+  + +   TP   A +   +   
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYE---TPWWTAARKADEQAL 60

Query: 199 SLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNSRD-YDHRTPLHVAAS 255
           S L+ E   ++  D      L      G    ++ +   G D + RD     T LH+AA 
Sbjct: 61  SQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119

Query: 256 EGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
                + + L+E GA +  +D  G T L+  R           
Sbjct: 120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 84.9 bits (211), Expect = 6e-20
 Identities = 30/130 (23%), Positives = 45/130 (34%), Gaps = 5/130 (3%)

Query: 171 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF-LCIAVARGDSDLL 229
             +  +     G    L   K GH           A  +V          A  + D   L
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA--DVVSEYETPWWTAARKADEQAL 60

Query: 230 KRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD-RWGNTPLDEGRM 288
            ++L    D ++ D + RT L   A  G     +LL EAGA +  +D R G T L     
Sbjct: 61  SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 119

Query: 289 CGNKNLIKLL 298
                +++ L
Sbjct: 120 YVRPEVVEAL 129

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  125 bits (316), Expect = 1e-34
 Identities = 27/166 (16%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
                        I  G  +        + L  ++  G  D+   +I +  D ++ +  G
Sbjct: 12  GKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEG 70

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 240
            T L  A+  GH  +   LV+ G ++N  D+  +  L  A +  +  + K ++ +G    
Sbjct: 71  ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 130

Query: 241 SRDYDH---RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
           +  Y              EG    ++ L      +   ++     L
Sbjct: 131 AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  120 bits (303), Expect = 1e-32
 Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 8/160 (5%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           ++  G+   ++ +I    D +  + +G + LH A   G+ +I  FL+Q GV++N  D  G
Sbjct: 44  SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLN-VDDAGSF----LCIAVARGDSDLLKRVLSNGV 237
            TPL  A  C +  V   LV+ GA++  +  +        C  +  G +   + +     
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163

Query: 238 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR 277
                +      L     +      +L ++ G  +    R
Sbjct: 164 KMGIMNKGVIYALWDYEPQN---DDELPMKEGDCMTIIHR 200

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  118 bits (298), Expect = 6e-32
 Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 6/158 (3%)

Query: 146 DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEG 205
           +  G+  L               I  G+ +          LL++   G   +   ++ E 
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEV 60

Query: 206 ASLNV-DDAGSF-LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAK 263
              ++ +D G   L  AV  G ++++K ++  GV+ N+ D D  TPLH AAS     + K
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK 120

Query: 264 LLLEAGASVFTK---DRWGNTPLDEGRMCGNKNLIKLL 298
            L+E+GA+VF     D        E    G     + L
Sbjct: 121 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.8 bits (125), Expect = 6e-08
 Identities = 7/78 (8%), Positives = 20/78 (25%), Gaps = 5/78 (6%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
               G     + L      +   +      L     +  +++    +++G  + I  +  
Sbjct: 146 EMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDCMTIIHRED 202

Query: 183 N--TPLLEAIKCGHDGVT 198
                   A     +G  
Sbjct: 203 EDEIEWWWARLNDKEGYV 220

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  122 bits (310), Expect = 2e-34
 Identities = 54/177 (30%), Positives = 75/177 (42%), Gaps = 33/177 (18%)

Query: 123 AAYHGDLYQLKGLI-RAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
           AA  GD+  +K L      +    +    +PLH A       +  +L+Q G D++ KDK 
Sbjct: 15  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 241
           G  PL  A   GH  V  LL                               + +G   N 
Sbjct: 75  GLVPLHNACSYGHYEVAELL-------------------------------VKHGAVVNV 103

Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            D    TPLH AA++G Y + KLLL+ GA    K+R GNTPLD  +  G+ ++  LL
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  107 bits (271), Expect = 1e-28
 Identities = 41/161 (25%), Positives = 56/161 (34%), Gaps = 35/161 (21%)

Query: 139 GADLNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPLLEAIKCGHDGV 197
           GA  N    +    L  A   G  +    L   + V+    +   +TPL  A       V
Sbjct: 1   GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 198 TSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG 257
              L                               L +G D +++D     PLH A S G
Sbjct: 58  VEYL-------------------------------LQHGADVHAKDKGGLVPLHNACSYG 86

Query: 258 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            Y +A+LL++ GA V   D W  TPL E    G   + KLL
Sbjct: 87  HYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  107 bits (270), Expect = 1e-28
 Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 32/148 (21%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA +  +  ++ L++ GAD++  D  G  PLH A S G+ ++   L++ G  +N+ D + 
Sbjct: 49  AAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK 108

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
            TPL EA   G   +  LL                               L +G DP  +
Sbjct: 109 FTPLHEAAAKGKYEICKLL-------------------------------LQHGADPTKK 137

Query: 243 DYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           + D  TPL +   +G   +  LL    A
Sbjct: 138 NRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  122 bits (309), Expect = 2e-34
 Identities = 32/152 (21%), Positives = 54/152 (35%), Gaps = 6/152 (3%)

Query: 136 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 195
           +   A  +         L  A +RG  +    L++ G + N  + +G  P+   +  G  
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57

Query: 196 GVTSLLVKEGASLNVDDAGSF---LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHV 252
            V  LL+  GA  N  D  +    +  A   G  D L  +   G   + RD   R P+ +
Sbjct: 58  RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117

Query: 253 AASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 284
           A   G   +A+ L  A       +       +
Sbjct: 118 AEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 94.1 bits (235), Expect = 1e-23
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 135 LIRAGADLNKTDYDGR-SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 193
           L+  GA+ N  D      P+H A   G+ D  + L + G  ++++D +G  P+  A + G
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG 122

Query: 194 HDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSD 227
           H  V   L          +      I  A G SD
Sbjct: 123 HRDVARYLRAAAGGTRGSNH---ARIDAAEGPSD 153

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 69.8 bits (172), Expect = 8e-15
 Identities = 20/64 (31%), Positives = 26/64 (40%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA  G L  L  L RAGA L+  D  GR P+ LA   G+ D+  +L          +   
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHAR 144

Query: 183 NTPL 186
               
Sbjct: 145 IDAA 148

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  124 bits (314), Expect = 2e-34
 Identities = 41/207 (19%), Positives = 76/207 (36%), Gaps = 31/207 (14%)

Query: 123 AAYHGDLYQL-KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI-----N 176
           AA   D+  L K L   G ++++    G + LH+A      +  + L++   ++      
Sbjct: 10  AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMT 69

Query: 177 IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF---------------LCIAV 221
            +   G T L  A+   +  +   L+  GAS++    GS                L  A 
Sbjct: 70  SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129

Query: 222 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG----LYLMAKLLLEAGASV----- 272
             G  ++++ ++ +G D  ++D    T LH+   +        M  LLL           
Sbjct: 130 CVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189

Query: 273 -FTKDRWGNTPLDEGRMCGNKNLIKLL 298
               +  G TP     + GN  + + L
Sbjct: 190 ELVPNNQGLTPFKLAGVEGNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  107 bits (270), Expect = 7e-28
 Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 21/156 (13%)

Query: 149 GRSPLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 207
             SPL LA      + ++  L  +G +++ +   G T L  A    +     +L++    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 208 LNV------DDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDH-------------R 247
           L           G + L IAV   + +L++ +L+ G   ++R                  
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122

Query: 248 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL 283
            PL  AA  G   + +LL+E GA +  +D  GNT L
Sbjct: 123 HPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 49.1 bits (118), Expect = 5e-07
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 248 TPLHVAASEG-LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           +PL +AA E  +  ++KLL   G  V  +   G T L    +  N     +L
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVL 56

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  124 bits (315), Expect = 3e-33
 Identities = 37/183 (20%), Positives = 68/183 (37%), Gaps = 22/183 (12%)

Query: 138 AGADLNKTDYDGRSPLHLATSRG--YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 195
                +     G++ LH     G  Y ++   L+Q G     KDK   TPL+ A++  + 
Sbjct: 127 NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNR 186

Query: 196 GVTSLLV-----KEGASLNV-DDAGSF-LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRT 248
               L++     K    L+  +  G+  L  A+     D+  R +  G+D N  D +H  
Sbjct: 187 EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTV 246

Query: 249 PLHVAASEGLYLMAKLLLEAGAS-------------VFTKDRWGNTPLDEGRMCGNKNLI 295
           PL+++    + L+ K LL+                 V          +        + ++
Sbjct: 247 PLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVL 306

Query: 296 KLL 298
           +LL
Sbjct: 307 QLL 309

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  121 bits (305), Expect = 7e-32
 Identities = 36/193 (18%), Positives = 66/193 (34%), Gaps = 35/193 (18%)

Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
                 +  K+D +    +H+A  +G  D    LI+ GV   I+++FG T L  A K G 
Sbjct: 6   TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGC 65

Query: 195 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 254
                 L   G   ++      + +AV    +DL+  ++    +        + P  +  
Sbjct: 66  VDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLN 119

Query: 255 SEGLYLMAKL-----------------------------LLEAGASVFTKDRWGNTPLDE 285
                 + ++                             L++ GAS   KD+   TPL  
Sbjct: 120 ECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR 179

Query: 286 GRMCGNKNLIKLL 298
                N+  + L+
Sbjct: 180 AMEFRNREALDLM 192

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.1 bits (214), Expect = 3e-19
 Identities = 10/115 (8%), Positives = 24/115 (20%), Gaps = 31/115 (26%)

Query: 139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 198
           G  +          +  A     +++   L +K  ++      G    ++  K     V 
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339

Query: 199 SLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVA 253
            +                                L+      +R         V+
Sbjct: 340 RMK-------------------------------LAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.9 bits (185), Expect = 2e-15
 Identities = 5/64 (7%), Positives = 16/64 (25%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA       L+ L     ++ ++   G         +    +    +     +  + +  
Sbjct: 297 AADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSR 356

Query: 183 NTPL 186
               
Sbjct: 357 ARSS 360

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  112 bits (284), Expect = 3e-31
 Identities = 58/148 (39%), Positives = 76/148 (51%), Gaps = 31/148 (20%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA +G L  +K L+ AGAD+N  D +GR+PLHLA   G+ ++   L++ G D+N KDK G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
            TPL  A + GH  V  LL                               L  G D N++
Sbjct: 69  RTPLHLAARNGHLEVVKLL-------------------------------LEAGADVNAK 97

Query: 243 DYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           D + RTPLH+AA  G   + KLLLEAGA
Sbjct: 98  DKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 65.8 bits (162), Expect = 1e-13
 Identities = 42/117 (35%), Positives = 52/117 (44%), Gaps = 31/117 (26%)

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 241
           G TPL  A + GH  V  LL                               L  G D N+
Sbjct: 2   GRTPLHLAARNGHLEVVKLL-------------------------------LEAGADVNA 30

Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           +D + RTPLH+AA  G   + KLLLEAGA V  KD+ G TPL      G+  ++KLL
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  112 bits (284), Expect = 4e-31
 Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 31/135 (22%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A  +GDL ++K  +  G D+N+T   GR PLH A   G  +I  FL+ KG DIN  DK  
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
            TPLL A+  GH     LL                               LS G D   +
Sbjct: 74  ITPLLSAVYEGHVSCVKLL-------------------------------LSKGADKTVK 102

Query: 243 DYDHRTPLHVAASEG 257
             D  T      ++ 
Sbjct: 103 GPDGLTAFEATDNQA 117

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  110 bits (277), Expect = 4e-30
 Identities = 37/149 (24%), Positives = 47/149 (31%), Gaps = 31/149 (20%)

Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 207
                   A   G  D     + KG D+N   + G  PL  A  CG   +   L+ +GA 
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA- 64

Query: 208 LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 267
                                         D N+ D  H TPL  A  EG     KLLL 
Sbjct: 65  ------------------------------DINAPDKHHITPLLSAVYEGHVSCVKLLLS 94

Query: 268 AGASVFTKDRWGNTPLDEGRMCGNKNLIK 296
            GA    K   G T  +       K L++
Sbjct: 95  KGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  112 bits (283), Expect = 4e-31
 Identities = 42/145 (28%), Positives = 56/145 (38%), Gaps = 33/145 (22%)

Query: 139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 198
           G        DG +PLH A   G+ +    L+ KG D+N + K GNTPL  A K GH  + 
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 199 SLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL 258
            LL                               L+ G D N+R  D  TP H+A   G 
Sbjct: 59  KLL-------------------------------LAKGADVNARSKDGNTPEHLAKKNGH 87

Query: 259 YLMAKLLLEAGASVFTKDRWGNTPL 283
           + + KLL   GA V  +    +   
Sbjct: 88  HEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 99.0 bits (248), Expect = 5e-26
 Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 31/129 (24%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA +G   ++K L+  GAD+N    DG +PLHLA   G+ +I   L+ KG D+N + K G
Sbjct: 16  AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDG 75

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
           NTP   A K GH  +  LL                                + G D N+R
Sbjct: 76  NTPEHLAKKNGHHEIVKLL-------------------------------DAKGADVNAR 104

Query: 243 DYDHRTPLH 251
            +      H
Sbjct: 105 SWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 75.1 bits (186), Expect = 4e-17
 Identities = 40/124 (32%), Positives = 49/124 (39%), Gaps = 31/124 (25%)

Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS 234
                K GNTPL  A K GH      L                               LS
Sbjct: 2   HMWGSKDGNTPLHNAAKNGHAEEVKKL-------------------------------LS 30

Query: 235 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNL 294
            G D N+R  D  TPLH+AA  G   + KLLL  GA V  + + GNTP    +  G+  +
Sbjct: 31  KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEI 90

Query: 295 IKLL 298
           +KLL
Sbjct: 91  VKLL 94

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  109 bits (275), Expect = 1e-29
 Identities = 47/161 (29%), Positives = 69/161 (42%), Gaps = 32/161 (19%)

Query: 139 GAD-LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 197
           G+   +    D    L  A   G +D    L+  G D+N KD++G TPL  A   GH  +
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI 62

Query: 198 TSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG 257
             +L                               L NG D N+ D    TPLH+AA  G
Sbjct: 63  VEVL-------------------------------LKNGADVNAVDAIGFTPLHLAAFIG 91

Query: 258 LYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
              +A++LL+ GA V  +D++G T  D     GN++L ++L
Sbjct: 92  HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  102 bits (256), Expect = 6e-27
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 31/145 (21%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA  G   +++ L+  GAD+N  D  G +PL+LAT+ G+ +I   L++ G D+N  D  G
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
            TPL  A   GH  +  +L                               L +G D N++
Sbjct: 81  FTPLHLAAFIGHLEIAEVL-------------------------------LKHGADVNAQ 109

Query: 243 DYDHRTPLHVAASEGLYLMAKLLLE 267
           D   +T   ++   G   +A++L +
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 72.8 bits (180), Expect = 5e-16
 Identities = 30/129 (23%), Positives = 49/129 (37%), Gaps = 32/129 (24%)

Query: 171 KGVDINIKD-KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLL 229
           +G   +          LLEA + G D    +L                            
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGQDDEVRIL---------------------------- 33

Query: 230 KRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 289
              ++NG D N++D    TPL++A + G   + ++LL+ GA V   D  G TPL      
Sbjct: 34  ---MANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90

Query: 290 GNKNLIKLL 298
           G+  + ++L
Sbjct: 91  GHLEIAEVL 99

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  114 bits (287), Expect = 1e-29
 Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 22/184 (11%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRG----YEDITLFLIQKGVDINIK 178
                +L  +K L++ G++    D  G S L  A               L      + ++
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 197

Query: 179 DKFGNTPL------------LEAIKCGHDGVTSLLVKEGASLNVDD------AGSFLCIA 220
           D    T L              A K   D +   +VK+                +     
Sbjct: 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257

Query: 221 VARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN 280
                 + L          N++D +  T L++AA  G   +   LL+ GA  F  ++ G 
Sbjct: 258 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL 317

Query: 281 TPLD 284
            P+D
Sbjct: 318 RPVD 321

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  103 bits (257), Expect = 2e-25
 Identities = 35/187 (18%), Positives = 66/187 (35%), Gaps = 23/187 (12%)

Query: 135 LIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG 193
                 +LN   D  G +PLH  TS    ++   L++ G +    D  G + L++A+K  
Sbjct: 116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV 175

Query: 194 H----DGVTSLLVKEGASLNVDD-------------AGSFLCIAVARGDSD-LLKRVLSN 235
           +        +LL      L ++D             +G   C A A+   D L+  ++  
Sbjct: 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 235

Query: 236 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF----TKDRWGNTPLDEGRMCGN 291
              P     + +       +          L+    +      +D  G+T L+     GN
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN 295

Query: 292 KNLIKLL 298
            +++  L
Sbjct: 296 ISIVDAL 302

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 68.1 bits (166), Expect = 4e-13
 Identities = 24/154 (15%), Positives = 42/154 (27%), Gaps = 22/154 (14%)

Query: 123 AAYHGDLYQLKG----LIRAGADLNKTDYDGRSPLHLA-----------TSRGYEDITL- 166
           A    + Y        L      L   D   R+ LH              ++ Y DI + 
Sbjct: 171 AVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG 230

Query: 167 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV-----DDAG-SFLCIA 220
           ++++K                              +     +       D  G + L IA
Sbjct: 231 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 290

Query: 221 VARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 254
              G+  ++  +L  G DP   +     P+   A
Sbjct: 291 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 67.0 bits (163), Expect = 1e-12
 Identities = 18/66 (27%), Positives = 25/66 (37%)

Query: 121 NSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 180
           N       L  L         LN  D +G + L++A   G   I   L+  G D  I +K
Sbjct: 255 NGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 314

Query: 181 FGNTPL 186
            G  P+
Sbjct: 315 SGLRPV 320

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  106 bits (266), Expect = 4e-27
 Identities = 32/188 (17%), Positives = 54/188 (28%), Gaps = 39/188 (20%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTD--------------YDGRSPLHLATSRGYEDITLFL 168
           A    ++  +  L+  GAD+                  Y G  PL LA       I  FL
Sbjct: 108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

Query: 169 IQKG---VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGD 225
           +Q      DI+ +D  GNT L   ++   + V +          +   G           
Sbjct: 168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG----------- 216

Query: 226 SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDE 285
                ++          +    TPL +AAS G   +   +L+                  
Sbjct: 217 ----AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHA 265

Query: 286 GRMCGNKN 293
                + +
Sbjct: 266 AAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 87.1 bits (216), Expect = 4e-20
 Identities = 30/186 (16%), Positives = 49/186 (26%), Gaps = 45/186 (24%)

Query: 138 AGADLNKTDYDGRSPLHLATSRGYE-------DITLFLIQKGVDINIKD-KFGNTPLLEA 189
             A         R  +  A ++                 ++  D   KD + G T LL+A
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61

Query: 190 ---IKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDH 246
              +  G +   +LL+      +                                  Y  
Sbjct: 62  MLNLHNGQNDTIALLLDVARKTDSLKQFV--------------------NASYTDSYYKG 101

Query: 247 RTPLHVAASEGLYLMAKLLLEAGASVFTKDR--------------WGNTPLDEGRMCGNK 292
           +T LH+A       +  LL+E GA V                   +G  PL         
Sbjct: 102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161

Query: 293 NLIKLL 298
            ++K L
Sbjct: 162 AIVKFL 167

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 58.6 bits (142), Expect = 4e-10
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 7/83 (8%)

Query: 112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK 171
                  +F ++ Y+  L     L         T+  G +PL LA S G   +  +++Q+
Sbjct: 196 DNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255

Query: 172 GVDINIKDKFGNTPLLEAIKCGH 194
            +               A    H
Sbjct: 256 EIH-------EPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 14/76 (18%), Positives = 19/76 (25%), Gaps = 11/76 (14%)

Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA-------GASVFTKDR-WGNTPL-- 283
           S            R  +  A ++      + LL               KD   G T L  
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60

Query: 284 -DEGRMCGNKNLIKLL 298
                  G  + I LL
Sbjct: 61  AMLNLHNGQNDTIALL 76

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  102 bits (256), Expect = 7e-26
 Identities = 34/174 (19%), Positives = 56/174 (32%), Gaps = 31/174 (17%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTD-------------YDGRSPLHLATSRGYEDITLFLI 169
           A     L  +K L+  GAD++                Y G  PL LA      D+  +L+
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156

Query: 170 QKGV---DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 226
           +       +   D  GNT L   +    +                   S L I +  G  
Sbjct: 157 ENPHQPASLEATDSLGNTVLHALVMIADN---------------SPENSALVIHMYDGLL 201

Query: 227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN 280
            +  R+          ++   TPL +AA EG   + + +L+   S        +
Sbjct: 202 QMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  101 bits (253), Expect = 2e-25
 Identities = 34/178 (19%), Positives = 54/178 (30%), Gaps = 35/178 (19%)

Query: 139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-------------KFGNTP 185
            A      Y G S LH+A  +        L++ G D++++               FG  P
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139

Query: 186 LLEAIKCGHDGVTSLLVKEG---ASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPN 240
           L  A       V + L++     ASL   D+     L   V   D               
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD--------------- 184

Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
             +    + L +   +GL  M   L          +  G TPL      G   + + +
Sbjct: 185 --NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 96.0 bits (239), Expect = 3e-23
 Identities = 37/187 (19%), Positives = 56/187 (29%), Gaps = 43/187 (22%)

Query: 122 SAAYHGDLYQLKGLI--------RAGADLNKTDYDGRSPLHLA---TSRGYEDITLFLIQ 170
           S    G   +L GL+                    G++ L  A      G     + L+Q
Sbjct: 8   SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ 67

Query: 171 KG-----------VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI 219
                             +   G++ L  AI+        LLV+ GA +++   G F   
Sbjct: 68  IDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQK 127

Query: 220 AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG---ASVFTKD 276
                                +  Y    PL +AA    + +   LLE     AS+   D
Sbjct: 128 ------------------HQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD 169

Query: 277 RWGNTPL 283
             GNT L
Sbjct: 170 SLGNTVL 176

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 71.7 bits (176), Expect = 1e-14
 Identities = 28/174 (16%), Positives = 45/174 (25%), Gaps = 44/174 (25%)

Query: 149 GRSPLHLATSRGY----EDITLFLIQKG----VDINIKDKFGNTPLLEAIKCGHDG---V 197
            R  L    SRG       +  +L             +   G T L++A+    DG    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 198 TSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG 257
              L++                                        Y   + LH+A  + 
Sbjct: 62  IMPLLQIDKDSGNPK--------------------PLVNAQCTDEFYQGHSALHIAIEKR 101

Query: 258 LYLMAKLLLEAGASVFTKDR-------------WGNTPLDEGRMCGNKNLIKLL 298
                KLL+E GA V  +               +G  PL         +++  L
Sbjct: 102 SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 67.1 bits (164), Expect = 4e-13
 Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 23/118 (19%)

Query: 115 ELALRFNSAAYHGDLYQLKGLIRAG---ADLNKTDYDGRSPLHLATS------------- 158
           EL L   +     D+     L+      A L  TD  G + LH                 
Sbjct: 137 ELPLSLAACTKQWDVVTY--LLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVI 194

Query: 159 ---RGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDA 213
               G   +   L        I +  G TPL  A K G   +   +++     +   A
Sbjct: 195 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF--SGAAA 250

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 95.1 bits (238), Expect = 9e-25
 Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 31/123 (25%)

Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS 207
           +GR+PLHLA   G+ ++   L++ G D+N KDK G TPL  A + GH  V  LL++ GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA- 59

Query: 208 LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 267
                                         D N++D + RTPLH+AA  G   + KLLLE
Sbjct: 60  ------------------------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

Query: 268 AGA 270
           AGA
Sbjct: 90  AGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 92.0 bits (230), Expect = 1e-23
 Identities = 39/84 (46%), Positives = 54/84 (64%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA +G L  +K L+ AGAD+N  D +GR+PLHLA   G+ ++   L++ G D+N KDK G
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNG 68

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGA 206
            TPL  A + GH  V  LL++ GA
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 65.5 bits (161), Expect = 7e-14
 Identities = 42/117 (35%), Positives = 52/117 (44%), Gaps = 31/117 (26%)

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 241
           G TPL  A + GH  V  LL                               L  G D N+
Sbjct: 2   GRTPLHLAARNGHLEVVKLL-------------------------------LEAGADVNA 30

Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           +D + RTPLH+AA  G   + KLLLEAGA V  KD+ G TPL      G+  ++KLL
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 49.3 bits (119), Expect = 4e-08
 Identities = 27/54 (50%), Positives = 34/54 (62%)

Query: 245 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           + RTPLH+AA  G   + KLLLEAGA V  KD+ G TPL      G+  ++KLL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 96.8 bits (241), Expect = 1e-23
 Identities = 43/234 (18%), Positives = 69/234 (29%), Gaps = 57/234 (24%)

Query: 122 SAAYHGDLYQLKG----LIRAGADLNKTDY----DGRSPLHLA---TSRGYEDITLFLIQ 170
                G    L+G    L+     L   ++     G++ L  A    S G  D    L+ 
Sbjct: 11  DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD 70

Query: 171 KG-----------VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--- 216
                                 G T L  AI+        LLV++GA ++    G F   
Sbjct: 71  IAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP 130

Query: 217 -------------LCIAVARGDSDLLKRVLSNG---VDPNSRDYDHRTPLHVAA------ 254
                        L +A       ++  +  NG    D   +D    T LH         
Sbjct: 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNT 190

Query: 255 ---SEGLYLMAKLLLEAGASVFTK-------DRWGNTPLDEGRMCGNKNLIKLL 298
              ++ +  M  LLL   A +F         +  G +PL      G   + + +
Sbjct: 191 RENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 93.3 bits (232), Expect = 2e-22
 Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 50/176 (28%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTD--------------YDGRSPLHLATSRGYEDITLFL 168
           A      + ++ L+  GAD++                 Y G  PL LA       I  +L
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

Query: 169 IQKG---VDINIKDKFGNTPLLEAIKCGHD---------GVTSLLVKEGASLNVDDAGSF 216
            + G    D+  +D  GNT L   +    +          +  LL+ + A L  D     
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN--- 216

Query: 217 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV 272
                                     + D  +PL +AA  G   + + ++    + 
Sbjct: 217 ---------------------LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 77.1 bits (190), Expect = 2e-16
 Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 46/178 (25%)

Query: 146 DYDGRSPLHLATSRG----YEDITLFLIQKGVDINIKD----KFGNTPLLEA---IKCGH 194
            ++ R  L    SRG     E +  FL+     +  ++      G T L +A   +  G 
Sbjct: 3   VFN-RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGR 61

Query: 195 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 254
           +    +L                 + +A    ++ + + S         Y  +T LH+A 
Sbjct: 62  NDTIPIL-----------------LDIAEKTGNMREFINSPF---RDVYYRGQTALHIAI 101

Query: 255 SEGLYLMAKLLLEAGASVFTKDR--------------WGNTPLDEGRMCGNKNLIKLL 298
                   +LL+E GA V  + R              +G  PL         +++  L
Sbjct: 102 ERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 21/114 (18%)

Query: 115 ELALRFNSAAYHGDLYQLKGLIRAG---ADLNKTDYDGRSPLHLATSRGYE--------- 162
           EL L    AA     + +  L   G   ADL + D  G + LH   +             
Sbjct: 141 ELPLSL--AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVT 198

Query: 163 DITLFLIQKGVDIN-------IKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN 209
            +   L+ K   +        + +  G +PL+ A K G  G+   +++   +  
Sbjct: 199 KMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.7 bits (111), Expect = 4e-06
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 7/53 (13%)

Query: 135 LIRAGADLNKT-------DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 180
           L+   A L          + DG SPL +A   G   I   +I++ +       
Sbjct: 204 LLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 91.5 bits (228), Expect = 3e-23
 Identities = 33/143 (23%), Positives = 51/143 (35%), Gaps = 34/143 (23%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
            + H   +   GL+  G+ +     D    L  A   G +D    L+  G D+  KDK G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
           +TPL  A + GH  V  LL                               L  G D  ++
Sbjct: 58  STPLHLAARNGHLEVVKLL-------------------------------LEAGADVXAQ 86

Query: 243 DYDHRTPLHVAASEGLYLMAKLL 265
           D   +T   ++   G   +A++L
Sbjct: 87  DKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 91.1 bits (227), Expect = 4e-23
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 34/144 (23%)

Query: 156 ATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGS 215
            +S  +   +  L+ +G  +          LLEA + G D    +L+  GA         
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGA--------- 48

Query: 216 FLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 275
                                 D  ++D +  TPLH+AA  G   + KLLLEAGA V  +
Sbjct: 49  ----------------------DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86

Query: 276 DRWGNTPLDEGRMCGNKNLIKLLE 299
           D++G T  D     GN++L ++L+
Sbjct: 87  DKFGKTAFDISIDNGNEDLAEILQ 110

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160

 Score = 80.8 bits (200), Expect = 9e-19
 Identities = 14/62 (22%), Positives = 23/62 (37%)

Query: 29 RKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
            I   L     ++   F+  S   +  + +        PG++I   G  +D L FV  G
Sbjct: 18 ADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSG 77

Query: 89 VL 90
           L
Sbjct: 78 SL 79

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 83.8 bits (207), Expect = 2e-18
 Identities = 42/358 (11%), Positives = 94/358 (26%), Gaps = 71/358 (19%)

Query: 33  QTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLGK 92
           Q   +P+I   +LF+   S     ++   ++E      + +     ++Q+  +       
Sbjct: 17  QLRLIPWILWENLFQHFISANELSLMTLSYKEAI---HIFLPGTKNMEQVRQLLCLYYAH 73

Query: 93  ESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSP 152
            +    +         I              +   D   L  L+ +   +     +    
Sbjct: 74  YNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDT--LCLLLTSDEIVKVIQAENYQA 131

Query: 153 LHLATSRGYEDITLFLIQKGVDINIKDKF--GNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
             LA   G+  +   L +      +             A + GH  V + L +   +   
Sbjct: 132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 191

Query: 211 DDAGS-----FLCIAVARGDSDLLKRVLSNGVDPNSRDY--------------------- 244
               +     F   AV RG  +++  +L   V     +                      
Sbjct: 192 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL 251

Query: 245 -DHRTPLHVAASEGL--------------------------------YLMAKLLLEAGAS 271
            +      ++  +G+                                +L++   ++A A 
Sbjct: 252 KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 311

Query: 272 VFTKDRWGNTPLDEGRMCGNKNLIKLL----EDAKCTQLSEFHYCSQ-GMIGIAENLL 324
             T     N  L      GN+    LL         T+ + ++     G + +    L
Sbjct: 312 TATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 77.7 bits (191), Expect = 4e-16
 Identities = 35/214 (16%), Positives = 59/214 (27%), Gaps = 39/214 (18%)

Query: 117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTD---YDGRSPLHLATSRGYEDITLFLIQKGV 173
           A R   AA +G L+ L  L               +  +    A  RG+ ++  FL+   V
Sbjct: 166 AFRL--AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV 223

Query: 174 DINIKDKFG------------------NTPLLEAIKCGH-DGVTSLLVKEGASLNVDDAG 214
            +   +                        + +A K  + DGV  L+ K           
Sbjct: 224 MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF---- 279

Query: 215 SFLCIAVARGDSDLLKRV--------LSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL 266
             L   + R D  LL  +        +       +   D    L +A   G      LLL
Sbjct: 280 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339

Query: 267 EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 300
              + +                 G  +L  +  +
Sbjct: 340 SIPSVLALTK---ANNYYINETGGRLDLRAVALE 370

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 58.4 bits (141), Expect = 8e-10
 Identities = 25/154 (16%), Positives = 43/154 (27%), Gaps = 29/154 (18%)

Query: 111 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYD--------------------GR 150
                LA        +G+ Y    + R    L +                        G 
Sbjct: 220 DCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF 279

Query: 151 SPLHLATSRGYED--------ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 202
             L     R  E         +++  I+            N  L  A++ G+ G  +LL+
Sbjct: 280 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339

Query: 203 KEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNG 236
              + L +  A ++  I    G  DL    L + 
Sbjct: 340 SIPSVLALTKANNYY-INETGGRLDLRAVALEHH 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 52.3 bits (125), Expect = 9e-08
 Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 3/72 (4%)

Query: 136 IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD 195
           I+A A       D    L LA   G +     L+     + +               G  
Sbjct: 306 IKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA---NNYYINETGGRL 362

Query: 196 GVTSLLVKEGAS 207
            + ++ ++    
Sbjct: 363 DLRAVALEHHHH 374

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198

 Score = 80.4 bits (199), Expect = 3e-18
 Identities = 14/62 (22%), Positives = 32/62 (51%)

Query: 29  RKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
           + ++       +  V  F G  S F+ ++V  L  E F P + ++++G   D+++F+  G
Sbjct: 62  QDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQG 121

Query: 89  VL 90
           ++
Sbjct: 122 IV 123

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 29  RKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
            KI        +  + LF      F+  ++ +L  E F PG+ I+ +G +  ++YF+ HG
Sbjct: 63  EKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHG 122

Query: 89  VL 90
           V+
Sbjct: 123 VV 124

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 76.2 bits (187), Expect = 4e-16
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 11/133 (8%)

Query: 188 EAIKCGHDGVTSLLVKEGASLNV--------DDAGSFLCIAVARGDSDLLKRV---LSNG 236
           EA+K            +G  L          +   + L +AV   D   L  V   + N 
Sbjct: 136 EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS 195

Query: 237 VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 296
            + + +     T LH           KLLL   AS+   +  G TPLD  +   +++  +
Sbjct: 196 GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEE 255

Query: 297 LLEDAKCTQLSEF 309
           LL  A   + +  
Sbjct: 256 LLTQALSGRFNSH 268

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 70.4 bits (172), Expect = 4e-14
 Identities = 28/173 (16%), Positives = 46/173 (26%), Gaps = 40/173 (23%)

Query: 111 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDY------DGRSPLHLATSRG---Y 161
              A        A    D++ L      G DL +            + LHLA        
Sbjct: 125 ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 184

Query: 162 EDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAV 221
             I  FL+Q   +++ +   G+T L       +     LL++                  
Sbjct: 185 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR------------------ 226

Query: 222 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 274
                                +    TPL +A         +LL +A +  F 
Sbjct: 227 -------------GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN 266

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 73.5 bits (180), Expect = 5e-15
 Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 186 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRV---LSNGVDPNSR 242
           +LEA   G D    L   +  +         L +AV   +   L  V   + NG   +++
Sbjct: 167 VLEAFANGQDFGQPLPGPDAQA----PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK 222

Query: 243 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 302
             D  T LH AA        KLLL+  A V T +  G T LD  R   +K   +LLE A+
Sbjct: 223 AADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ 282

Query: 303 CTQLSEF 309
               +  
Sbjct: 283 AGTFAFP 289

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 71.9 bits (176), Expect = 2e-14
 Identities = 31/162 (19%), Positives = 46/162 (28%), Gaps = 40/162 (24%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDY------DGRSPLHLATSRGYED---ITLFLIQKGV 173
           A  + DL  +      G D  +              LHLA     +    +  F+IQ G 
Sbjct: 158 AICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG 217

Query: 174 DINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVL 233
            ++ K   GNT L  A          LL+K  A                           
Sbjct: 218 HLDAKAADGNTALHYAALYNQPDCLKLLLKGRA--------------------------- 250

Query: 234 SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 275
                  + +    T L +A  +      +LL +A A  F  
Sbjct: 251 ----LVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 288

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 68.1 bits (166), Expect = 3e-13
 Identities = 20/82 (24%), Positives = 31/82 (37%)

Query: 122 SAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
             A    L  +  +I+ G  L+    DG + LH A      D    L++    +   ++ 
Sbjct: 199 KVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA 258

Query: 182 GNTPLLEAIKCGHDGVTSLLVK 203
           G T L  A K  H     LL +
Sbjct: 259 GETALDIARKKHHKECEELLEQ 280

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 29  RKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
             I+  L    + ++ LF+  S   +  + + +   F  PGE ++ QG+ +  +YFVC G
Sbjct: 67  ADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSG 125

Query: 89  VL 90
            +
Sbjct: 126 SM 127

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 122 SAAYHGDLYQLKGLIRAGADLNKT------DYDGRSPLHLA---TSRGYEDITLFLIQKG 172
           +A  + DL  +      G D  +              LHLA    ++    +  F+IQ G
Sbjct: 138 TAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG 197

Query: 173 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVAR 223
             ++ K   GNT L  A          LL+K  A +   +      + +AR
Sbjct: 198 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 18/69 (26%), Positives = 28/69 (40%)

Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
           +I+ G  L+    DG + LH A      D    L++    +   ++ G T L  A K  H
Sbjct: 193 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHH 252

Query: 195 DGVTSLLVK 203
                LL +
Sbjct: 253 KECEELLEQ 261

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 68.7 bits (167), Expect = 3e-13
 Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 4/130 (3%)

Query: 186 LLEAIKCGHDGVTSLLVKEGASLNV----DDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 241
              +         +  +  GA +N      D  + L  A A       + +L NG + N 
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263

Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301
            D   R PLH A   G   +A L L+ GA +  +D  G  PL       N +++ LL  A
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLA 323

Query: 302 KCTQLSEFHY 311
           K  +      
Sbjct: 324 KMREAEAAQG 333

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 67.5 bits (164), Expect = 9e-13
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 2/126 (1%)

Query: 100 QVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKT--DYDGRSPLHLAT 157
           + + +            AL F ++ +   L  +   +  GAD+N      D  +PL  AT
Sbjct: 184 RSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQAT 243

Query: 158 SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL 217
           +        FL+Q G ++N  D  G  PL  A   GH G+  L +K GA L   D+    
Sbjct: 244 AANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRD 303

Query: 218 CIAVAR 223
            + +A 
Sbjct: 304 PLTIAM 309

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 67.1 bits (163), Expect = 1e-12
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 93  ESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSP 152
            +        +D+ +  G  +    L    A     L   + L++ GA++N+ D  GR P
Sbjct: 214 PTMADALAHGADVNWVNGGQDNATPL--IQATAANSLLACEFLLQNGANVNQADSAGRGP 271

Query: 153 LHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLV 202
           LH AT  G+  +    +++G D+  +D  G  PL  A++  +  + +LL 
Sbjct: 272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDI-TLFLIQKGVDINIKD 179
           A   G        ++ GADL   D +GR PL +A      DI TL  + K  +     
Sbjct: 275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQ 332

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137

 Score = 64.4 bits (157), Expect = 5e-13
 Identities = 11/51 (21%), Positives = 25/51 (49%)

Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
          + +V LF+      ++ I  RL    F     ++ +G+ ++++ F+  G L
Sbjct: 8  VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRL 58

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138

 Score = 55.4 bits (134), Expect = 9e-10
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
          +  V LF+      + +IV  L       G VI   G   D+++FV  G
Sbjct: 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEG 61

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 13/51 (25%), Positives = 26/51 (50%)

Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
           + + LFK    E ++Q++  + E+    GE +++QG+  D  Y +  G  
Sbjct: 40 CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTF 90

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 51.4 bits (123), Expect = 1e-07
 Identities = 12/71 (16%), Positives = 30/71 (42%)

Query: 18  RYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGN 77
           R      L       + +Y   ++ + + K  ++    ++   L  + + PGE I+ +G+
Sbjct: 105 RLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGD 164

Query: 78  VIDQLYFVCHG 88
             +  Y + +G
Sbjct: 165 QGENFYLIEYG 175

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 11/86 (12%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG---VLGKESNL 96
           I    LF    S+    ++  L E+    G  I++QG+  D  Y V  G       ++ +
Sbjct: 9   IRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDNKV 68

Query: 97  RLKQVESDITFHIGKHEAELALRFNS 122
                    +   G    ELAL +NS
Sbjct: 69  N--------SSGPGSSFGELALMYNS 86

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154

 Score = 48.1 bits (115), Expect = 4e-07
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
          IEK  LF        + I   +    F+ GE +++QG+  D  Y +  G +
Sbjct: 40 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEM 90

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 50.1 bits (119), Expect = 5e-07
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 36  YMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
           Y  +IE +   K        ++V  +  + +  GE I+ QG++ D  + V  G +
Sbjct: 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEV 319

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 49.4 bits (117), Expect = 8e-07
 Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG--KESNLR 97
            + + LFK    E ++Q++  + E+    GE +++QG+  D  Y +  G      + +  
Sbjct: 147 CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGV 206

Query: 98  LKQVESDITFHIGKHEAELALRFNS 122
            + V     +       ELAL +N+
Sbjct: 207 GRCVG---NYDNRGSFGELALMYNT 228

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 49.5 bits (118), Expect = 5e-07
 Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 11/86 (12%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG---VLGKESNL 96
           I      K      I +IV  ++   +     I+++G+V   +Y +  G   V  +   L
Sbjct: 41  ILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGVKL 100

Query: 97  RLKQVESDITFHIGKHEAELALRFNS 122
                    T   GK   ELA+ +N 
Sbjct: 101 C--------TMGPGKVFGELAILYNC 118

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 36  YMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
           YM +++ V  F+    E ++++   L E  +  GE I+ QG   D  + +  G
Sbjct: 155 YMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKG 207

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
          I      K      I +IV  ++   +     I+++G+V   +Y +  G +
Sbjct: 25 ILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKV 75

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 37 MPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
          +  + K+ LF   S+E +  +   +          ++ +G+  D L  +  G
Sbjct: 38 LEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTG 89

>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB: 3unw_A* 3ss3_A 3ss4_A 3ss5_A* Length = 534

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 217 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG 257
           L     + +  L K  +   V P S +    T ++   S G
Sbjct: 486 LDYESLQQELAL-KETVWKKVSPESNEDISTTVVYRMESLG 525

>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB: 3unw_A* 3ss3_A 3ss4_A 3ss5_A* Length = 534

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 5/40 (12%), Positives = 13/40 (32%), Gaps = 1/40 (2%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYE 162
            +   +L  LK  +         +    + ++   S G +
Sbjct: 489 ESLQQEL-ALKETVWKKVSPESNEDISTTVVYRMESLGEK 527

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 46.6 bits (110), Expect = 5e-06
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 33  QTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLGK 92
           + +Y  ++ KVS+ +         +   L    F  GE I+ QG   D  Y +  G    
Sbjct: 243 RKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASV 302

Query: 93  ESNLRLKQVESDITFHIGKHEA--ELAL 118
                  +   ++   +G  +   E+AL
Sbjct: 303 LQRRSPNEEYVEVG-RLGPSDYFGEIAL 329

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 43.9 bits (103), Expect = 4e-05
 Identities = 14/51 (27%), Positives = 21/51 (41%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
           I K  LF        + I   +     + GE +++QGN  D  Y V  G +
Sbjct: 132 ISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEV 182

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 46.2 bits (109), Expect = 5e-06
 Identities = 13/64 (20%), Positives = 25/64 (39%)

Query: 25  LYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYF 84
           L       + +Y  ++ KVS+ +         +   L    F  G+ I+ QG   D+ + 
Sbjct: 144 LMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFI 203

Query: 85  VCHG 88
           +  G
Sbjct: 204 ILEG 207

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 40  IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLGKESNLRLK 99
           IEK  LF        + I   +    F+ GE +++QG+  D  Y +  G +         
Sbjct: 41  IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDV-----YV 95

Query: 100 QVESDITFHIGKHEAELALRFNS 122
             E   +   G    ELAL + +
Sbjct: 96  NNEWATSVGEGGSFGELALIYGT 118

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 3/83 (3%)

Query: 39  YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGV--LGKESNL 96
            +     F   + E +  I +   E+ F  G VI ++ +  D L  +  G   L   +  
Sbjct: 7   RLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGG 66

Query: 97  RLKQVESDI-TFHIGKHEAELAL 118
                 S + +   G      +L
Sbjct: 67  AGSAANSTVCSVVPGAIFGVSSL 89

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333

 Score = 45.4 bits (107), Expect = 1e-05
 Identities = 9/53 (16%), Positives = 22/53 (41%)

Query: 36 YMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
           +  +  + +F+GC +E +  +   +       G+V++ QG        +  G
Sbjct: 11 RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSG 63

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 17/85 (20%), Positives = 27/85 (31%)

Query: 6  AVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEF 65
          A A       E    L  R          +    ++ V  F+      + QI +  + E 
Sbjct: 10 AHAAHSQSSAEWIACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYEN 69

Query: 66 FLPGEVIMEQGNVIDQLYFVCHGVL 90
             G  +  QG++    Y V  G L
Sbjct: 70 LEKGITLFRQGDIGTNWYAVLAGSL 94

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 39 YIEKVSLFKGCSSEFINQIVIRLHEE-FFLPGEVIMEQGNVIDQLYFVCHG 88
          ++ ++  F   +     ++   +  E     G +I+E G  +D  Y + +G
Sbjct: 17 FMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNG 67

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
          + +  LF     E   ++   + E     G+ +  +G+  D+LY V  G
Sbjct: 7  LRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEG 55

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 37  MPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL------ 90
           M  I  + L K  +   +   +   H   +     ++ QG   + LY++  G +      
Sbjct: 45  MADIGSMVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKD 104

Query: 91  --GKESNLRL 98
             GKE  L  
Sbjct: 105 EEGKEMILSY 114

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL--------G 91
          ++   LF+  S   + +++          G  +  QG      Y++  G +        G
Sbjct: 14 LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEG 73

Query: 92 KESNLRL 98
          +E  L +
Sbjct: 74 QEKILEV 80

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 8/70 (11%)

Query: 37 MPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL------ 90
          +  +++  LF+    + + + +  + E  F P E+++EQ    + L+ V  GV+      
Sbjct: 5  LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVS 64

Query: 91 --GKESNLRL 98
            G+E  L  
Sbjct: 65 LGGRERVLGD 74

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 10/73 (13%)

Query: 36 YMPYIEKVSLFKGCSSEFINQIV--IRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL--- 90
              + ++ LF+G   E    I+  ++LH      GE I++ GN   QL F+  G +   
Sbjct: 16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIV 75

Query: 91 -----GKESNLRL 98
                  + +  
Sbjct: 76 TNAKENIYTVIEQ 88

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 39 YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL-------- 90
           + +  +F+G     I  +  +L    F  G  +  +G   D+LY +  G +        
Sbjct: 7  ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 66

Query: 91 GKESNLRL 98
          G+E+ L +
Sbjct: 67 GRENLLTI 74

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 13/70 (18%), Positives = 20/70 (28%), Gaps = 8/70 (11%)

Query: 37 MPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL------ 90
          M +     L+   ++     I   L  +    G +I         L  V  G L      
Sbjct: 2  MSFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILS 61

Query: 91 --GKESNLRL 98
            G+E  L  
Sbjct: 62 DEGREITLYR 71

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220

 Score = 39.9 bits (94), Expect = 4e-04
 Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 39 YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL-------G 91
           +   +L +  +SE  + ++    E+ +    ++       + ++ V  G +        
Sbjct: 5  RLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYED 64

Query: 92 KESNLRL 98
          KE  L +
Sbjct: 65 KEFTLAI 71

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL--------G 91
          ++   LF+  S   + +++          G  +  QG      Y++  G +        G
Sbjct: 11 LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEG 70

Query: 92 KESNLRL 98
          +E  L +
Sbjct: 71 QEKILEV 77

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL--------G 91
          ++   LF G + E ++  +       +  G+ I  QG++   LY V  G +        G
Sbjct: 1  MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGG 60

Query: 92 KESNLRL 98
          +E  L L
Sbjct: 61 QERTLAL 67

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 8/64 (12%)

Query: 43 VSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL--------GKES 94
          + L K  +   +   +   H   +     ++ QG   + LY++  G +        GKE 
Sbjct: 1  MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM 60

Query: 95 NLRL 98
           L  
Sbjct: 61 ILSY 64

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213

 Score = 39.1 bits (92), Expect = 9e-04
 Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 8/67 (11%)

Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVL--------G 91
          +    +        + +++       F  GE++  Q + I+ +  +  G L        G
Sbjct: 1  MGSDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENG 60

Query: 92 KESNLRL 98
          K   +  
Sbjct: 61 KTLEIDE 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	329
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.98
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.98
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.98
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-39  Score=297.53  Aligned_cols=215  Identities=24%  Similarity=0.323  Sum_probs=181.3

Q ss_pred             CccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHH
Q 020239          110 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  189 (329)
Q Consensus       110 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  189 (329)
                      +..+..+.|||+.|+..|+.+++++|++.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus       173 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  252 (437)
T 1n11_A          173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA  252 (437)
T ss_dssp             TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            34455667888888888888888888888888888888888899999988888999999888888888888889999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHH
Q 020239          190 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE  267 (329)
Q Consensus       190 ~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  267 (329)
                      +..|+.+++++|++++++++..+  +.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++
T Consensus       253 ~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  332 (437)
T 1n11_A          253 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ  332 (437)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHH
T ss_pred             HHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            99999999999998888877654  5689999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccc--------cccchhHHHHHhhh
Q 020239          268 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH--------YCSQGMIGIAENLL  324 (329)
Q Consensus       268 ~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~~--------~~~~~~~~~~~~l~  324 (329)
                      +|++++.+|..|+||||+|+..|+.++|++|+++|+.......        +...|+.+++++|.
T Consensus       333 ~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~  397 (437)
T 1n11_A          333 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK  397 (437)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            9999999999999999999999999999999999886543321        23446666666664

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.8e-39  Score=297.06  Aligned_cols=215  Identities=27%  Similarity=0.314  Sum_probs=198.0

Q ss_pred             ccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239          111 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  190 (329)
Q Consensus       111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  190 (329)
                      ..+..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus       141 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  220 (437)
T 1n11_A          141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA  220 (437)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence            34556779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHC
Q 020239          191 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA  268 (329)
Q Consensus       191 ~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~  268 (329)
                      ..|+.+++++|++.|++++..+  +.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++
T Consensus       221 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  300 (437)
T 1n11_A          221 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH  300 (437)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            9999999999999999888764  67999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--------cccccchhHHHHHhhhc
Q 020239          269 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE--------FHYCSQGMIGIAENLLL  325 (329)
Q Consensus       269 g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~--------~~~~~~~~~~~~~~l~~  325 (329)
                      |++++.++..|+||||+|+..|+.++|++|+++|+..-..        ..++..++.+++++|+.
T Consensus       301 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~  365 (437)
T 1n11_A          301 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK  365 (437)
T ss_dssp             TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHH
Confidence            9999999999999999999999999999999998864332        22456789999999985

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.6e-39  Score=276.00  Aligned_cols=192  Identities=29%  Similarity=0.338  Sum_probs=181.5

Q ss_pred             chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCC-CccccCCCCCcHHHHHHH
Q 020239          113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIK  191 (329)
Q Consensus       113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~~  191 (329)
                      +..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|. +++..+..|.||||+|+.
T Consensus        54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  133 (253)
T 1yyh_A           54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  133 (253)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence            4556799999999999999999999999999999999999999999999999999999987 899999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCC
Q 020239          192 CGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG  269 (329)
Q Consensus       192 ~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g  269 (329)
                      .|+.+++++|++.|++++..+  +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       134 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  213 (253)
T 1yyh_A          134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF  213 (253)
T ss_dssp             HTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999998766  679999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239          270 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  304 (329)
Q Consensus       270 ~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~  304 (329)
                      ++++.+|..|+||+++|+..|+.+++++|.+....
T Consensus       214 a~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~  248 (253)
T 1yyh_A          214 ANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH  248 (253)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred             CCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence            99999999999999999999999999999887553

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.4e-38  Score=272.61  Aligned_cols=196  Identities=28%  Similarity=0.334  Sum_probs=184.7

Q ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccc----------CCC
Q 020239          112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK----------DKF  181 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----------~~~  181 (329)
                      .+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..          +..
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~  147 (285)
T 1wdy_A           68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKG  147 (285)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccC
Confidence            4456679999999999999999999999999999999999999999999999999999999999877          778


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHc-CCCCCcCC--CCcHHHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCchHHHHHH
Q 020239          182 GNTPLLEAIKCGHDGVTSLLVKE-GASLNVDD--AGSFLCIAVARGD----SDLLKRVLSNGVDPNSRDYDHRTPLHVAA  254 (329)
Q Consensus       182 g~t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~~--~~~~l~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  254 (329)
                      |.||||+|+..|+.+++++|++. |.+++..+  +.||||+|+..++    .+++++|++.|++++.++..|.||||+|+
T Consensus       148 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~  227 (285)
T 1wdy_A          148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV  227 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            99999999999999999999987 88888755  6799999999999    99999999999999999999999999999


Q ss_pred             HhCcHHHHHHHHH-CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 020239          255 SEGLYLMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS  307 (329)
Q Consensus       255 ~~~~~~iv~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~  307 (329)
                      ..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++...
T Consensus       228 ~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             HcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence            9999999999999 8999999999999999999999999999999999997644

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.6e-39  Score=276.05  Aligned_cols=219  Identities=25%  Similarity=0.260  Sum_probs=168.1

Q ss_pred             cCccchhhhHHHHHHHHcC-------------CHHHHHHHHHcCCCCCC-CCCCCChHHHHHHHcCcHHHHHHHHhcCCC
Q 020239          109 IGKHEAELALRFNSAAYHG-------------DLYQLKGLIRAGADLNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVD  174 (329)
Q Consensus       109 ~~~~~~~~~~~l~~A~~~g-------------~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  174 (329)
                      ++..+..+.||||+|+..|             +.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~   82 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD   82 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3446678899999999987             89999999999999865 488999999999999999999999999999


Q ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCcC--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHH
Q 020239          175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA-SLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH  251 (329)
Q Consensus       175 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~-~~~~~--~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~  251 (329)
                      ++..+..|.||||+|+..|+.+++++|++.+. +++..  .+.||||+|+..|+.+++++|++.|++++.+|..|.||||
T Consensus        83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~  162 (253)
T 1yyh_A           83 ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH  162 (253)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            99999999999999999999999999999976 66654  4779999999999999999999999999999999999999


Q ss_pred             HHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--------cccccchhHHHHHhh
Q 020239          252 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE--------FHYCSQGMIGIAENL  323 (329)
Q Consensus       252 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~--------~~~~~~~~~~~~~~l  323 (329)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+.....        ..+...|+.+++++|
T Consensus       163 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l  242 (253)
T 1yyh_A          163 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL  242 (253)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999865333        224577999999998


Q ss_pred             hcCC
Q 020239          324 LLLP  327 (329)
Q Consensus       324 ~~~~  327 (329)
                      ...+
T Consensus       243 ~~~~  246 (253)
T 1yyh_A          243 DLEH  246 (253)
T ss_dssp             HC--
T ss_pred             HHHh
Confidence            7653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-40  Score=282.68  Aligned_cols=189  Identities=25%  Similarity=0.337  Sum_probs=152.5

Q ss_pred             hhhHHHHHHHHcCCHH-HHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 020239          115 ELALRFNSAAYHGDLY-QLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  193 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  193 (329)
                      .+.+||+.|+..++.+ ++++|++.|+++|.+|.+|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..+
T Consensus        51 ~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~  130 (269)
T 4b93_B           51 EFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQG  130 (269)
T ss_dssp             ------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             cCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccC
Confidence            3458899999888764 789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCC
Q 020239          194 HDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  271 (329)
Q Consensus       194 ~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~  271 (329)
                      +.+++++|++.|++++..+  +.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.++|++|+++|++
T Consensus       131 ~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad  210 (269)
T 4b93_B          131 HFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGAS  210 (269)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCC
Confidence            9999999999999998765  67999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCcHHHHHHHcCC-HHHHHHHHHcCC
Q 020239          272 VFTKDRWGNTPLDEGRMCGN-KNLIKLLEDAKC  303 (329)
Q Consensus       272 ~~~~~~~g~t~l~~A~~~~~-~~iv~~L~~~~~  303 (329)
                      ++.+|..|+||||+|+++++ .+++++|.+.+.
T Consensus       211 ~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~  243 (269)
T 4b93_B          211 VQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVA  243 (269)
T ss_dssp             SCCCCTTSCCSGGGSCTTCHHHHHTTC------
T ss_pred             CCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhch
Confidence            99999999999999998775 344455544443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.8e-38  Score=264.26  Aligned_cols=197  Identities=28%  Similarity=0.339  Sum_probs=187.3

Q ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCC-CccccCCCCCcHHHHHH
Q 020239          112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI  190 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~  190 (329)
                      .+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++++. +++..+..|.||||+|+
T Consensus        21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~  100 (223)
T 2f8y_A           21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA  100 (223)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999987 88999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHC
Q 020239          191 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA  268 (329)
Q Consensus       191 ~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~  268 (329)
                      ..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++
T Consensus       101 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  180 (223)
T 2f8y_A          101 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH  180 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999999988765  67999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 020239          269 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE  308 (329)
Q Consensus       269 g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~  308 (329)
                      |++++.+|..|.||+++|+..++.+++++|+++|+....+
T Consensus       181 ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~~  220 (223)
T 2f8y_A          181 FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ  220 (223)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC-
T ss_pred             CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcccc
Confidence            9999999999999999999999999999999999865443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.2e-38  Score=266.60  Aligned_cols=217  Identities=22%  Similarity=0.269  Sum_probs=193.7

Q ss_pred             ccchhhhHHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHH
Q 020239          111 KHEAELALRFNSAAYHGDLYQLKGLIR----AGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL  186 (329)
Q Consensus       111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l  186 (329)
                      ..+..+.||||+|+..|+.+++++|++    .|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l   83 (241)
T 1k1a_A            4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA   83 (241)
T ss_dssp             ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence            356678899999999999999999997    7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCC----CCCcC--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCchHHHHHHHhCcH
Q 020239          187 LEAIKCGHDGVTSLLVKEGA----SLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD-YDHRTPLHVAASEGLY  259 (329)
Q Consensus       187 ~~A~~~~~~~~v~~Ll~~~~----~~~~~--~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~  259 (329)
                      |+|+..|+.+++++|++.+.    +++..  .+.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~  163 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  163 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence            99999999999999999976    55544  46799999999999999999999999999999 8899999999999999


Q ss_pred             HHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--------cccccchhHHHHHhhhcCC
Q 020239          260 LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE--------FHYCSQGMIGIAENLLLLP  327 (329)
Q Consensus       260 ~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~  327 (329)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+.....        ..+...++.++++.|..-|
T Consensus       164 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~  239 (241)
T 1k1a_A          164 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP  239 (241)
T ss_dssp             HHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence            9999999999999999999999999999999999999999998864322        2345679999999887654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.3e-39  Score=276.66  Aligned_cols=209  Identities=23%  Similarity=0.236  Sum_probs=184.2

Q ss_pred             ccchhhhHHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHH
Q 020239          111 KHEAELALRFNSAAYHGDLYQLKGLIRAGAD---LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  187 (329)
Q Consensus       111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~  187 (329)
                      ..+..+.||||+|+..|+.+++++|++.|++   ++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus         4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~   83 (282)
T 1oy3_D            4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (282)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            3566788999999999999999999999988   7888999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCC-----------------------------------------------CCc--CCCCcHHH
Q 020239          188 EAIKCGHDGVTSLLVKEGAS-----------------------------------------------LNV--DDAGSFLC  218 (329)
Q Consensus       188 ~A~~~~~~~~v~~Ll~~~~~-----------------------------------------------~~~--~~~~~~l~  218 (329)
                      +|+..|+.+++++|++++++                                               ++.  ..+.||||
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  163 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence            99999999999999998754                                               222  34679999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCC-CCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHH
Q 020239          219 IAVARGDSDLLKRVLSNGVDPNSRDY-DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL  297 (329)
Q Consensus       219 ~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~  297 (329)
                      +|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus       164 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~  243 (282)
T 1oy3_D          164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL  243 (282)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHH
Confidence            99999999999999999999999985 49999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCccccccccchhHHHH
Q 020239          298 LEDAKCTQLSEFHYCSQGMIGIA  320 (329)
Q Consensus       298 L~~~~~~~~~~~~~~~~~~~~~~  320 (329)
                      |+++|+..... ...+...+..+
T Consensus       244 Ll~~ga~~~~~-~~~g~tpl~~a  265 (282)
T 1oy3_D          244 LRAHGAPEPED-GGDKLSPCSSS  265 (282)
T ss_dssp             HHHTTCCCCCC-C----------
T ss_pred             HHHcCCCcCcC-CCccccccccc
Confidence            99999975443 23334444433

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.9e-39  Score=271.22  Aligned_cols=192  Identities=22%  Similarity=0.265  Sum_probs=177.9

Q ss_pred             chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCC----CccccCCCCCcHHHH
Q 020239          113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV----DINIKDKFGNTPLLE  188 (329)
Q Consensus       113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~l~~  188 (329)
                      +..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++++.    +++..+..|.||||+
T Consensus        43 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~  122 (241)
T 1k1a_A           43 NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV  122 (241)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH
T ss_pred             cccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHH
Confidence            3446699999999999999999999999999999999999999999999999999999987    788899999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCcCC---CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHH
Q 020239          189 AIKCGHDGVTSLLVKEGASLNVDD---AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  265 (329)
Q Consensus       189 A~~~~~~~~v~~Ll~~~~~~~~~~---~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~L  265 (329)
                      |+..|+.+++++|++.|++++..+   +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus       123 A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  202 (241)
T 1k1a_A          123 AVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL  202 (241)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999998765   77999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239          266 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  304 (329)
Q Consensus       266 l~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~  304 (329)
                      +++|++++.+|..|.||+++|+..|+.++++.|.+++++
T Consensus       203 l~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~aS  241 (241)
T 1k1a_A          203 VRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS  241 (241)
T ss_dssp             HHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-------
T ss_pred             HhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCCC
Confidence            999999999999999999999999999999999987653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=8e-38  Score=262.72  Aligned_cols=198  Identities=27%  Similarity=0.312  Sum_probs=187.2

Q ss_pred             cCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHH
Q 020239          109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  188 (329)
Q Consensus       109 ~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  188 (329)
                      ++..+..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   83 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL   83 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH
Confidence            34456677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcC-CCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHH
Q 020239          189 AIKCGHDGVTSLLVKEG-ASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  265 (329)
Q Consensus       189 A~~~~~~~~v~~Ll~~~-~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~L  265 (329)
                      |+..|+.+++++|++.+ .+++..+  +.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|
T Consensus        84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  163 (237)
T 3b7b_A           84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL  163 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            99999999999999998 6666544  67999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 020239          266 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL  306 (329)
Q Consensus       266 l~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~  306 (329)
                      +++|++++.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus       164 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~  204 (237)
T 3b7b_A          164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT  204 (237)
T ss_dssp             HTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999998654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=4.5e-38  Score=278.99  Aligned_cols=205  Identities=27%  Similarity=0.321  Sum_probs=190.5

Q ss_pred             ccccccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCC
Q 020239          104 DITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN  183 (329)
Q Consensus       104 ~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~  183 (329)
                      ......+..+..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus        46 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~  125 (351)
T 3utm_A           46 PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF  125 (351)
T ss_dssp             TTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            33444556677788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCcC----------------------------------------------------
Q 020239          184 TPLLEAIKCGHDGVTSLLVKEGASLNVD----------------------------------------------------  211 (329)
Q Consensus       184 t~l~~A~~~~~~~~v~~Ll~~~~~~~~~----------------------------------------------------  211 (329)
                      ||||+|+..|+.+++++|+++|++++..                                                    
T Consensus       126 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  205 (351)
T 3utm_A          126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF  205 (351)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccc
Confidence            9999999999999999999999887642                                                    


Q ss_pred             ----CCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHH
Q 020239          212 ----DAGSFLCIAVAR---GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD  284 (329)
Q Consensus       212 ----~~~~~l~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~  284 (329)
                          .+.||||+|+..   ++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus       206 ~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~  285 (351)
T 3utm_A          206 KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH  285 (351)
T ss_dssp             CCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence                356999999999   5589999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCccc
Q 020239          285 EGRMCGNKNLIKLLEDAKCTQLSE  308 (329)
Q Consensus       285 ~A~~~~~~~iv~~L~~~~~~~~~~  308 (329)
                      +|+..|+.+++++|+++|++....
T Consensus       286 ~A~~~~~~~~v~~Ll~~gad~~~~  309 (351)
T 3utm_A          286 RAALAGHLQTCRLLLSYGSDPSII  309 (351)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHcCcHHHHHHHHHcCCCCCCc
Confidence            999999999999999999975444

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=7.3e-39  Score=268.00  Aligned_cols=193  Identities=27%  Similarity=0.384  Sum_probs=146.7

Q ss_pred             ccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239          111 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  190 (329)
Q Consensus       111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  190 (329)
                      ..+..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus        35 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  114 (231)
T 3aji_A           35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA  114 (231)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            34555667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHC
Q 020239          191 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA  268 (329)
Q Consensus       191 ~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~  268 (329)
                      ..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus       115 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  194 (231)
T 3aji_A          115 SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ  194 (231)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence            7777777777777777766554  55777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239          269 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  303 (329)
Q Consensus       269 g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~  303 (329)
                      |++++.+|..|.||+++|+..++.+++++|.++|+
T Consensus       195 ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a  229 (231)
T 3aji_A          195 GASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA  229 (231)
T ss_dssp             TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence            77777777777777777777777777777777665

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=5.6e-38  Score=271.20  Aligned_cols=214  Identities=25%  Similarity=0.266  Sum_probs=194.8

Q ss_pred             CccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHH
Q 020239          110 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  189 (329)
Q Consensus       110 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  189 (329)
                      ...+..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A  132 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNA  132 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHH
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            34566778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCcC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHC
Q 020239          190 IKCGHDGVTSLLVKEGASLNVD-DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA  268 (329)
Q Consensus       190 ~~~~~~~~v~~Ll~~~~~~~~~-~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~  268 (329)
                      +..|+.+++++|++.|++++.. ++.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus       133 ~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  212 (285)
T 3d9h_A          133 CVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES  212 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence            9999999999999999988754 367999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-------cccccchhHHHHHhhhc
Q 020239          269 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE-------FHYCSQGMIGIAENLLL  325 (329)
Q Consensus       269 g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~-------~~~~~~~~~~~~~~l~~  325 (329)
                      |++++. +..|.||||+|+..|+.+++++|+++|++....       ...+. +..+++++|+.
T Consensus       213 ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~-~~~~~~~~Ll~  274 (285)
T 3d9h_A          213 GADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP-PESPLAQLFLE  274 (285)
T ss_dssp             TCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC-TTSHHHHHHHH
T ss_pred             CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc-CccHHHHHHHH
Confidence            999995 889999999999999999999999998864332       22222 45677777764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=8.2e-39  Score=276.40  Aligned_cols=214  Identities=21%  Similarity=0.125  Sum_probs=196.7

Q ss_pred             cCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHH
Q 020239          109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  188 (329)
Q Consensus       109 ~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  188 (329)
                      .+..+..+.||||+|+..|+.+++++|++.|++++..+  |.||||+|+..|+.+++++|+++|++++.++..|.||||+
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  101 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY  101 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH
Confidence            34567788899999999999999999999999998874  8999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCcCCC---CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHH
Q 020239          189 AIKCGHDGVTSLLVKEGASLNVDDA---GSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  265 (329)
Q Consensus       189 A~~~~~~~~v~~Ll~~~~~~~~~~~---~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~L  265 (329)
                      |+..|+.+++++|+++|++++..+.   .||||+|+..|+.+++++|++.|++.... ..|.||||+|+..|+.+++++|
T Consensus       102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~L  180 (285)
T 3kea_A          102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILL  180 (285)
T ss_dssp             HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHH
Confidence            9999999999999999999987664   69999999999999999999999876333 2899999999999999999999


Q ss_pred             HHCCCCccCCCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCccc-cccccchhHHHHHhhhc
Q 020239          266 LEAGASVFTKDRWGNTP-LDEGRMCGNKNLIKLLEDAKCTQLSE-FHYCSQGMIGIAENLLL  325 (329)
Q Consensus       266 l~~g~~~~~~~~~g~t~-l~~A~~~~~~~iv~~L~~~~~~~~~~-~~~~~~~~~~~~~~l~~  325 (329)
                      +++|++++.+|..|+|| ||+|+..|+.+++++|+++|+..... ..++..++.+++++|+.
T Consensus       181 l~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~a~~~~~~~iv~~Ll~  242 (285)
T 3kea_A          181 LDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLENVLLDDAEIAKMIIE  242 (285)
T ss_dssp             HHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTGGGGTTTCHHHHHHHHH
T ss_pred             HHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCChhhhhcCCHHHHHHHHH
Confidence            99999999999999998 99999999999999999999976444 45567799999999974

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.1e-37  Score=261.97  Aligned_cols=185  Identities=28%  Similarity=0.397  Sum_probs=175.8

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcC-CCccccCCCCCcHHHHHHHcCC
Q 020239          116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG-VDINIKDKFGNTPLLEAIKCGH  194 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~  194 (329)
                      +.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++| .+++..+..|.||||+|+..|+
T Consensus        44 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  123 (237)
T 3b7b_A           44 QRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH  123 (237)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC
Confidence            348999999999999999999999999999999999999999999999999999998 8899999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCc
Q 020239          195 DGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  272 (329)
Q Consensus       195 ~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~  272 (329)
                      .+++++|++.|++++..+  +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus       124 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~  203 (237)
T 3b7b_A          124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV  203 (237)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence            999999999999988765  679999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 020239          273 FTKDRWGNTPLDEGRMCGNKNLIKLLED  300 (329)
Q Consensus       273 ~~~~~~g~t~l~~A~~~~~~~iv~~L~~  300 (329)
                      +.+|..|.||+|+|+..++.+.+..+.+
T Consensus       204 ~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          204 TLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             TCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             CccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999876665543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=5.1e-37  Score=271.45  Aligned_cols=281  Identities=21%  Similarity=0.229  Sum_probs=211.4

Q ss_pred             hHHHhHhCchhhhhHhhhhcccccccchhhhchhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhh
Q 020239            5 PAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYF   84 (329)
Q Consensus         5 ~~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (329)
                      +..|+..|+.++|++||+.|++++..-...-+.+..   +.......+.+..++.....-..       ...........
T Consensus        29 L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh---~A~~~g~~~iv~~Ll~~ga~~~~-------~~~~~~~~~~~   98 (337)
T 4g8k_A           29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLH---NAVQMSREDIVELLLRHGADPVL-------RKKNGATPFIL   98 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH---HHHHTTCHHHHHHHHHTTCCTTC-------CCTTCCCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHH---HHHHcCCHHHHHHHHHcCCchhh-------hccCCCchhHH
Confidence            678999999999999999999987543221111110   11123345555555543221100       00111111111


Q ss_pred             hhhcccCCchhhhhhhhccccccccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCChHHH
Q 020239           85 VCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKT----------DYDGRSPLH  154 (329)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~----------~~~g~t~L~  154 (329)
                      ...   ...........  ......+..+..+.|||++|+..|+.+++++|++.|++++..          +..|.||||
T Consensus        99 ~~~---~~~~~~~~~~~--~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~  173 (337)
T 4g8k_A           99 AAI---AGSVKLLKLFL--SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM  173 (337)
T ss_dssp             HHH---HTCHHHHHHHH--TTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH
T ss_pred             HHh---cccchhhHHhh--hccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHH
Confidence            111   11111111111  223334556777889999999999999999999999887643          456899999


Q ss_pred             HHHHcCcHHHHHHHHh-cCCCccccCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHH
Q 020239          155 LATSRGYEDITLFLIQ-KGVDINIKDKFGNTPLLEAIKCGH----DGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSD  227 (329)
Q Consensus       155 ~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~  227 (329)
                      +|+..|+.+++++|++ .|++++.++..|.|+++.++..+.    .+++++|+++|++++..+  +.||||+|+..|+.+
T Consensus       174 ~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~  253 (337)
T 4g8k_A          174 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG  253 (337)
T ss_dssp             HHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHH
T ss_pred             HHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhH
Confidence            9999999999999996 599999999999999998887654    358899999999998765  679999999999999


Q ss_pred             HHHHHHHC-CCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239          228 LLKRVLSN-GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  305 (329)
Q Consensus       228 ~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~  305 (329)
                      +++.|++. |++++.+|.+|+||||+|+..|+.++|++|+++|++++.+     +||++|+..|+.++|++|+++|+..
T Consensus       254 ~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~  327 (337)
T 4g8k_A          254 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKE  327 (337)
T ss_dssp             HHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC
T ss_pred             HHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCC
Confidence            99999975 8999999999999999999999999999999999998754     5999999999999999999999965

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.6e-37  Score=257.05  Aligned_cols=210  Identities=29%  Similarity=0.312  Sum_probs=191.5

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 020239          116 LALRFNSAAYHGDLYQLKGLIRAGAD-LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  194 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  194 (329)
                      ..++|+.|+..|+.+.+++|++.+.. ++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   85 (231)
T 3aji_A            6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGX   85 (231)
T ss_dssp             SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCH
Confidence            45889999999999999999988644 67788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCc
Q 020239          195 DGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  272 (329)
Q Consensus       195 ~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~  272 (329)
                      .+++++|+++|++++..+  +.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus        86 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  165 (231)
T 3aji_A           86 DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST  165 (231)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc
Confidence            999999999999988765  679999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc--------ccccchhHHHHHhhhc
Q 020239          273 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF--------HYCSQGMIGIAENLLL  325 (329)
Q Consensus       273 ~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~--------~~~~~~~~~~~~~l~~  325 (329)
                      +.+|..|+||||+|+..|+.+++++|+++|++.....        .+...++.+++++|+.
T Consensus       166 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~  226 (231)
T 3aji_A          166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEG  226 (231)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc
Confidence            9999999999999999999999999999998653322        1234467777777753

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=8.8e-38  Score=279.23  Aligned_cols=190  Identities=21%  Similarity=0.152  Sum_probs=122.8

Q ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhc----CCCccc----------
Q 020239          112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK----GVDINI----------  177 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~----------  177 (329)
                      .+..+.||||+|+..|+.+++++|++.|++++.  ..|.||||+|+..|+.+++++|+++    |.+++.          
T Consensus        49 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~  126 (364)
T 3ljn_A           49 QNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREV  126 (364)
T ss_dssp             CCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCE
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhh
Confidence            344445555555555555555555555553322  2445555555555555555555555    444444          


Q ss_pred             -------cCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCC-----CCC
Q 020239          178 -------KDKFGNTPLLEAIKCG--HDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVD-----PNS  241 (329)
Q Consensus       178 -------~~~~g~t~l~~A~~~~--~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~-----~~~  241 (329)
                             .+..|.||||+|+..|  +.+++++|++.|++++..+  +.||||+|+..|+.+++++|++.|++     ++.
T Consensus       127 ~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~  206 (364)
T 3ljn_A          127 NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY  206 (364)
T ss_dssp             EEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTC
T ss_pred             hhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccc
Confidence                   5556777777777777  6777777777777666554  45777777777777777777776666     777


Q ss_pred             CCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239          242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  303 (329)
Q Consensus       242 ~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~  303 (329)
                      .|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus       207 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~  268 (364)
T 3ljn_A          207 ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTD  268 (364)
T ss_dssp             CCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCC
Confidence            77777777777777777777777777777777777777777777777777777777777654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=8.6e-37  Score=262.84  Aligned_cols=213  Identities=26%  Similarity=0.281  Sum_probs=196.1

Q ss_pred             chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHc
Q 020239          113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  192 (329)
Q Consensus       113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  192 (329)
                      +..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  115 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY  115 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh
Confidence            45567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCcC------------CCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCchHHHHHHHhCc-
Q 020239          193 GHDGVTSLLVKEGASLNVD------------DAGSFLCIAVARGDSDLLKRVLSN-GVDPNSRDYDHRTPLHVAASEGL-  258 (329)
Q Consensus       193 ~~~~~v~~Ll~~~~~~~~~------------~~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~-  258 (329)
                      |+.+++++|++.|++++..            .+.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..++ 
T Consensus       116 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~  195 (285)
T 1wdy_A          116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD  195 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT
T ss_pred             CCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc
Confidence            9999999999999998854            366999999999999999999987 99999999999999999999999 


Q ss_pred             ---HHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCccc--------cccccchhHHHHHhhhc
Q 020239          259 ---YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED-AKCTQLSE--------FHYCSQGMIGIAENLLL  325 (329)
Q Consensus       259 ---~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~-~~~~~~~~--------~~~~~~~~~~~~~~l~~  325 (329)
                         .+++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|+.....        ..++..++.+++++|+.
T Consensus       196 ~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~  274 (285)
T 1wdy_A          196 SDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK  274 (285)
T ss_dssp             TTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHH
Confidence               999999999999999999999999999999999999999999 56543222        22345688999999874

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.1e-37  Score=267.66  Aligned_cols=188  Identities=24%  Similarity=0.333  Sum_probs=174.0

Q ss_pred             chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHc
Q 020239          113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  192 (329)
Q Consensus       113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  192 (329)
                      +..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+ .|.||||+|+..
T Consensus        89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~  167 (285)
T 3d9h_A           89 TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARR  167 (285)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHc
Confidence            3445699999999999999999999999999999999999999999999999999999999988654 499999999999


Q ss_pred             CCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCC
Q 020239          193 GHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA  270 (329)
Q Consensus       193 ~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~  270 (329)
                      |+.+++++|++.|++++..+  +.||||+|+..|+.+++++|++.|++++. +..|.||||+|+..|+.+++++|+++|+
T Consensus       168 g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  246 (285)
T 3d9h_A          168 GHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGA  246 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            99999999999999988764  66999999999999999999999999995 8899999999999999999999999999


Q ss_pred             CccCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCC
Q 020239          271 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA-KCT  304 (329)
Q Consensus       271 ~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~-~~~  304 (329)
                      +++.+|..|+|||++|+  ++.+++++|+++ +++
T Consensus       247 d~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~  279 (285)
T 3d9h_A          247 DTQAKNAEGKRPVELVP--PESPLAQLFLEREGAS  279 (285)
T ss_dssp             CTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC---
T ss_pred             CCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccC
Confidence            99999999999999999  467999999998 544

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=4.8e-37  Score=251.45  Aligned_cols=187  Identities=26%  Similarity=0.346  Sum_probs=177.1

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 020239          116 LALRFNSAAYHGDLYQLKGLIRAGA-DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  194 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  194 (329)
                      ..++|+.|+..|+.+.++.|++.+. +++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   84 (201)
T 3hra_A            5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGR   84 (201)
T ss_dssp             CTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            4589999999999999999998875 899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCchHHHHHHHhCc-----HHHHHHH
Q 020239          195 DGVTSLLV-KEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLHVAASEGL-----YLMAKLL  265 (329)
Q Consensus       195 ~~~v~~Ll-~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~-----~~iv~~L  265 (329)
                      .+++++|+ +.+.+++..+  +.||||+|+..|+.+++++|++.| ++++.+|..|.||||+|+..++     .+++++|
T Consensus        85 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~L  164 (201)
T 3hra_A           85 TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLL  164 (201)
T ss_dssp             HHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHH
T ss_pred             HHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHH
Confidence            99999999 5566776654  679999999999999999999998 9999999999999999999987     9999999


Q ss_pred             HHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020239          266 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK  302 (329)
Q Consensus       266 l~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~  302 (329)
                      +++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       165 l~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          165 MENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             HHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            9999999999999999999999999999999999886

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=8.1e-38  Score=280.37  Aligned_cols=196  Identities=21%  Similarity=0.285  Sum_probs=138.2

Q ss_pred             cCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcC---CCccccCCCCCcH
Q 020239          109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG---VDINIKDKFGNTP  185 (329)
Q Consensus       109 ~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~  185 (329)
                      .+..+..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++++   ++++..+..|.||
T Consensus       159 vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~  238 (373)
T 2fo1_E          159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA  238 (373)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCH
T ss_pred             CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCH
Confidence            3444556667777777777777777777777777777777777777777777777777777765   5677777777777


Q ss_pred             HHHHHHcC---CHHHHHHHHHcCCCCCcC----------CCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCchHHH
Q 020239          186 LLEAIKCG---HDGVTSLLVKEGASLNVD----------DAGSFLCIAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLH  251 (329)
Q Consensus       186 l~~A~~~~---~~~~v~~Ll~~~~~~~~~----------~~~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~  251 (329)
                      ||+|+..+   +.+++++|++.|++++..          .+.||||+|+..|+.+++++|++.+ ++++.+|..|.||||
T Consensus       239 L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~  318 (373)
T 2fo1_E          239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM  318 (373)
T ss_dssp             HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHH
T ss_pred             HHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHH
Confidence            77777766   667777777777766541          3557777777777777777777654 777777777777777


Q ss_pred             HHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239          252 VAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  304 (329)
Q Consensus       252 ~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~  304 (329)
                      +|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++++.
T Consensus       319 ~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          319 LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE  371 (373)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred             HHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            77777777777777777777777777777777777777777777777776653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2.2e-37  Score=266.53  Aligned_cols=178  Identities=26%  Similarity=0.290  Sum_probs=155.0

Q ss_pred             hhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCC-------------------
Q 020239          114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD-------------------  174 (329)
Q Consensus       114 ~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------------------  174 (329)
                      ..+.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++                   
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  122 (282)
T 1oy3_D           43 DLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD  122 (282)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcc
Confidence            3455999999999999999999999999999999999999999999999999999998765                   


Q ss_pred             ----------------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC---CCcHHHHHHHc
Q 020239          175 ----------------------------INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---AGSFLCIAVAR  223 (329)
Q Consensus       175 ----------------------------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~---~~~~l~~A~~~  223 (329)
                                                  ++..+..|.||||+|+..|+.+++++|+++|++++..+   +.||||+|+..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~  202 (282)
T 1oy3_D          123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA  202 (282)
T ss_dssp             ---------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             hhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHc
Confidence                                        56678889999999999999999999999999999865   77999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCC
Q 020239          224 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN  291 (329)
Q Consensus       224 g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  291 (329)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|.....
T Consensus       203 ~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          203 QAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred             CCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999987654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1e-36  Score=254.30  Aligned_cols=192  Identities=27%  Similarity=0.316  Sum_probs=176.6

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCChHHHHHHHcCcHHHHHHHHhcC--CCccc-cCCCCCcHHHHHHH
Q 020239          116 LALRFNSAAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKG--VDINI-KDKFGNTPLLEAIK  191 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~-~~~~g~t~l~~A~~  191 (329)
                      +.||||.|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|+++|  .+++. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            4589999999999999999999987754 47899999999999999999999999999  55665 77889999999999


Q ss_pred             cCCHHHHHHHHHcC--CCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHH
Q 020239          192 CGHDGVTSLLVKEG--ASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE  267 (329)
Q Consensus       192 ~~~~~~v~~Ll~~~--~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  267 (329)
                      .|+.+++++|+++|  ++++..+  +.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999998  7766544  6799999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCccCCCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCcc
Q 020239          268 AG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLE-DAKCTQLS  307 (329)
Q Consensus       268 ~g-~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~-~~~~~~~~  307 (329)
                      +| ++++.+|..|+||||+|+..|+.+++++|+ +.|++...
T Consensus       162 ~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~  203 (228)
T 2dzn_A          162 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL  203 (228)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCC
T ss_pred             cCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCc
Confidence            99 999999999999999999999999999999 88876543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.2e-36  Score=269.07  Aligned_cols=211  Identities=24%  Similarity=0.245  Sum_probs=161.6

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHHcCCCCC---------------------------------CCCCCCChHHHHHHHcCc
Q 020239          115 ELALRFNSAAYHGDLYQLKGLIRAGADLN---------------------------------KTDYDGRSPLHLATSRGY  161 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~---------------------------------~~~~~g~t~L~~A~~~g~  161 (329)
                      .+.||||+|+..|+.++|++|+++|++++                                 ..|..|.||+|+|+..|+
T Consensus        58 ~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~  137 (337)
T 4g8k_A           58 GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK  137 (337)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTC
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCc
Confidence            35677777777777777777777776543                                 344556677777777777


Q ss_pred             HHHHHHHHhcCCCcccc----------CCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCcCC--CCcHHHHHHHcCC---
Q 020239          162 EDITLFLIQKGVDINIK----------DKFGNTPLLEAIKCGHDGVTSLLVK-EGASLNVDD--AGSFLCIAVARGD---  225 (329)
Q Consensus       162 ~~~v~~Ll~~g~~~~~~----------~~~g~t~l~~A~~~~~~~~v~~Ll~-~~~~~~~~~--~~~~l~~A~~~g~---  225 (329)
                      .+++++|+++|++++..          +..|.||||+|+..|+.+++++|++ .|++++..+  +.++++.++..+.   
T Consensus       138 ~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~  217 (337)
T 4g8k_A          138 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD  217 (337)
T ss_dssp             HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTT
T ss_pred             HHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCccc
Confidence            77777777777665533          3346777777777777777777774 467766654  4567766655433   


Q ss_pred             -HHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHC-CCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239          226 -SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA-GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  303 (329)
Q Consensus       226 -~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~  303 (329)
                       .+++++|+++|++++.+|..|+||||+|+..|+.++++.|++. |++++.+|..|+||||+|+..|+.++|++|+++|+
T Consensus       218 ~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  297 (337)
T 4g8k_A          218 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGA  297 (337)
T ss_dssp             HHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence             3467777788888888999999999999999999999999984 89999999999999999999999999999999998


Q ss_pred             CCccc---cccccchhHHHHHhhhc
Q 020239          304 TQLSE---FHYCSQGMIGIAENLLL  325 (329)
Q Consensus       304 ~~~~~---~~~~~~~~~~~~~~l~~  325 (329)
                      +.-..   ..++..++.++|++||.
T Consensus       298 d~n~~~~L~~A~~~~~~~iv~~Ll~  322 (337)
T 4g8k_A          298 STDCGDLVMTARRNYDHSLVKVLLS  322 (337)
T ss_dssp             SSTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            65332   23566789999999985

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.2e-36  Score=253.83  Aligned_cols=190  Identities=27%  Similarity=0.305  Sum_probs=154.9

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 020239          116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  194 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  194 (329)
                      +.+|||.|+..|+.+++++|++.|.+++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus        42 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  121 (240)
T 3eu9_A           42 NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH  121 (240)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCH
Confidence            4478888888888888888888888776554 448888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCC-HHHHHHHHHCCCCCCCCCC-CCchHHHHHHHhCcHHHHHHHHHCCC
Q 020239          195 DGVTSLLVKEGASLNVDD--AGSFLCIAVARGD-SDLLKRVLSNGVDPNSRDY-DHRTPLHVAASEGLYLMAKLLLEAGA  270 (329)
Q Consensus       195 ~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~-~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~g~  270 (329)
                      .+++++|+++|++++..+  +.||||+|+..++ .+++++|++.|++++..+. .|.||||+|+..|+.+++++|+++|+
T Consensus       122 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  201 (240)
T 3eu9_A          122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA  201 (240)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            888888888888777654  5588888886665 7888888888888888876 78888888888888888888888888


Q ss_pred             CccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239          271 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  305 (329)
Q Consensus       271 ~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~  305 (329)
                      +++.+|..|.||+++|+..|+.+++++|+++++..
T Consensus       202 ~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~  236 (240)
T 3eu9_A          202 NVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK  236 (240)
T ss_dssp             CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence            88888888888888888888888888888887643

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.7e-38  Score=266.87  Aligned_cols=196  Identities=23%  Similarity=0.227  Sum_probs=179.8

Q ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHH
Q 020239          112 HEAELALRFNSAAYHGDLYQLKGLIRAGA----DLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  187 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~  187 (329)
                      .+..+.||||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   83 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH   83 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            45567799999999999999999998764    68999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCC------C--cCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCchHHHHHHHhCc
Q 020239          188 EAIKCGHDGVTSLLVKEGASL------N--VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDY-DHRTPLHVAASEGL  258 (329)
Q Consensus       188 ~A~~~~~~~~v~~Ll~~~~~~------~--~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~  258 (329)
                      +|+..|+.+++++|++.+.+.      +  ...+.||||+|+..|+.+++++|++.|++++.++. .|.||||+|+..|+
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~  163 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN  163 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            999999999999999998753      2  23477999999999999999999999999999997 99999999999999


Q ss_pred             HHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 020239          259 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS  307 (329)
Q Consensus       259 ~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~  307 (329)
                      .+++++|+++|++++.+|..|+|||++|+..|+.+++++|+++|+....
T Consensus       164 ~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~  212 (236)
T 1ikn_D          164 PDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ  212 (236)
T ss_dssp             HHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGS
T ss_pred             HHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhh
Confidence            9999999999999999999999999999999999999999999997653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.4e-37  Score=262.08  Aligned_cols=195  Identities=24%  Similarity=0.303  Sum_probs=155.6

Q ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHHcCCC--------CCCCCCCCChHHHHHHHcCcH-HHHHHHHhcCCCccccCCCC
Q 020239          112 HEAELALRFNSAAYHGDLYQLKGLIRAGAD--------LNKTDYDGRSPLHLATSRGYE-DITLFLIQKGVDINIKDKFG  182 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~--------~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~~~~g  182 (329)
                      .+....++|+.|+..|+.++|++|++.|.+        ++..+..|.|||+.|+..++. .++++|++.|+++|.+|..|
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G   86 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG   86 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence            344567899999999999999999998865        455677899999999988765 48899999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHH
Q 020239          183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL  260 (329)
Q Consensus       183 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  260 (329)
                      .||||+|+..|+.+++++|++.+++++..+  +.||++.|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~  166 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHE  166 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGG
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            999999999999999999999999888765  679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 020239          261 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL  306 (329)
Q Consensus       261 iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~  306 (329)
                      ++++|+++|++++.++..|+||||+|+..|+.++|++|+++|++..
T Consensus       167 ~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~  212 (269)
T 4b93_B          167 LVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ  212 (269)
T ss_dssp             GHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            9999999999999999999999999999999999999999998653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=8.4e-37  Score=254.88  Aligned_cols=184  Identities=24%  Similarity=0.211  Sum_probs=171.2

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHHcC--CCCCC-CCCCCChHHHHHHHcCcHHHHHHHHhcC--CCccccCCCCCcHHHHH
Q 020239          115 ELALRFNSAAYHGDLYQLKGLIRAG--ADLNK-TDYDGRSPLHLATSRGYEDITLFLIQKG--VDINIKDKFGNTPLLEA  189 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~~v~~Ll~~~--~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A  189 (329)
                      .+.||||+|+..|+.+++++|++.|  .+++. .+..|.||||+|+..|+.+++++|+++|  ++++..+..|.||||+|
T Consensus        35 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A  114 (228)
T 2dzn_A           35 DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA  114 (228)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHH
Confidence            4459999999999999999999999  55555 7889999999999999999999999998  88999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCchHHHHHHHhCcHHHHHHHH
Q 020239          190 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLHVAASEGLYLMAKLLL  266 (329)
Q Consensus       190 ~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll  266 (329)
                      +..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|++.| ++++.+|..|+||||+|+..|+.+++++|+
T Consensus       115 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  194 (228)
T 2dzn_A          115 VGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  194 (228)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999988765  679999999999999999999999 999999999999999999999999999999


Q ss_pred             -HCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020239          267 -EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA  301 (329)
Q Consensus       267 -~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~  301 (329)
                       ++|++++.+|..|+||+++|+..   +++++|+++
T Consensus       195 ~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          195 EKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             HHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             HhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence             89999999999999999999654   677777764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.3e-37  Score=264.68  Aligned_cols=191  Identities=21%  Similarity=0.152  Sum_probs=177.1

Q ss_pred             hhHHHHHHHHcCCHH----HHHHHHHcCCCCCC----CCCCCChHHHHHHHc---CcHHHHHHHHhcCCCcccc------
Q 020239          116 LALRFNSAAYHGDLY----QLKGLIRAGADLNK----TDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIK------  178 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~----~v~~Ll~~~~~~~~----~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~------  178 (329)
                      +.|+||.|+..|+.+    ++++|++.|++++.    .|..|.||||+|+..   |+.+++++|+++|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            469999999999997    66777789999998    899999999999999   9999999999998776633      


Q ss_pred             -----CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC---------------CCcHHHHHHHcCCHHHHHHHHH---C
Q 020239          179 -----DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD---------------AGSFLCIAVARGDSDLLKRVLS---N  235 (329)
Q Consensus       179 -----~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~---------------~~~~l~~A~~~g~~~~v~~Ll~---~  235 (329)
                           |..|.||||+|+..|+.+++++|+++|++++..+               +.||||+|+..|+.+++++|++   .
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence                 3679999999999999999999999999998876               7799999999999999999999   9


Q ss_pred             CCCCCCCCCCCchHHHHHHH--hCcHH-------HHHHHHHCCCCc-------cCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 020239          236 GVDPNSRDYDHRTPLHVAAS--EGLYL-------MAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKLLE  299 (329)
Q Consensus       236 g~~~~~~~~~g~t~L~~A~~--~~~~~-------iv~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~iv~~L~  299 (329)
                      |++++.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||||+|+..|+.+++++|+
T Consensus       162 ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  241 (256)
T 2etb_A          162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL  241 (256)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999999  77888       999999999999       899999999999999999999999999


Q ss_pred             HcCCCCc
Q 020239          300 DAKCTQL  306 (329)
Q Consensus       300 ~~~~~~~  306 (329)
                      ++|+...
T Consensus       242 ~~g~~~~  248 (256)
T 2etb_A          242 QREFSGA  248 (256)
T ss_dssp             HHHHHHH
T ss_pred             hCCCCCC
Confidence            9987543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=4.7e-36  Score=238.39  Aligned_cols=157  Identities=46%  Similarity=0.656  Sum_probs=119.6

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHH
Q 020239          117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  196 (329)
Q Consensus       117 ~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  196 (329)
                      .++|+.|++.|+.++|++|++.|+++|.+|..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence            46789999999999999999999999999999999999999999999999999999999998888888888888777666


Q ss_pred             HHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCC
Q 020239          197 VTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD  276 (329)
Q Consensus       197 ~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~  276 (329)
                      ++++|+++|+                               +++.+|.+|+||||+|+..|+.+++++|+++|++++.+|
T Consensus        85 ~v~~Ll~~ga-------------------------------dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d  133 (169)
T 4gpm_A           85 VVKLLISKGA-------------------------------DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD  133 (169)
T ss_dssp             HHHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHCcC-------------------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Confidence            6666665554                               555556666666666666666666666666666666666


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239          277 RWGNTPLDEGRMCGNKNLIKLLEDAKCT  304 (329)
Q Consensus       277 ~~g~t~l~~A~~~~~~~iv~~L~~~~~~  304 (329)
                      ..|+|||++|+..|+.+++++|+++|+.
T Consensus       134 ~~G~TpL~~A~~~g~~~iv~~Ll~~GA~  161 (169)
T 4gpm_A          134 SDGRTPLDLAREHGNEEVVKLLEKQGGW  161 (169)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            6666666666666666666666666664

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=247.96  Aligned_cols=216  Identities=24%  Similarity=0.252  Sum_probs=195.6

Q ss_pred             ccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccC-CCCCcHHHHH
Q 020239          111 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEA  189 (329)
Q Consensus       111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A  189 (329)
                      ..+..+.++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|.+++..+ ..|.||||+|
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A   83 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA   83 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence            345567789999999999999999999999999999999999999999999999999999999887555 4499999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCc-HHHHHHHH
Q 020239          190 IKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL-YLMAKLLL  266 (329)
Q Consensus       190 ~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~-~~iv~~Ll  266 (329)
                      +..|+.+++++|++.|++++..+  +.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++ .+++++|+
T Consensus        84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~  163 (240)
T 3eu9_A           84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL  163 (240)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHH
Confidence            99999999999999999988754  5699999999999999999999999999999999999999997776 89999999


Q ss_pred             HCCCCccCCCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--------cccccchhHHHHHhhhcC
Q 020239          267 EAGASVFTKDR-WGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE--------FHYCSQGMIGIAENLLLL  326 (329)
Q Consensus       267 ~~g~~~~~~~~-~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~  326 (329)
                      +.|++++..+. .|.||||+|+..|+.+++++|+++|+.....        ..+...++.+++++|+..
T Consensus       164 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~  232 (240)
T 3eu9_A          164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA  232 (240)
T ss_dssp             HTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence            99999999987 8999999999999999999999998865433        223566899999999753

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=9e-37  Score=273.57  Aligned_cols=212  Identities=20%  Similarity=0.201  Sum_probs=193.1

Q ss_pred             hhhhHHHHHHHHcCCHHHHHHHH--------HcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcH
Q 020239          114 AELALRFNSAAYHGDLYQLKGLI--------RAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP  185 (329)
Q Consensus       114 ~~~~~~l~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  185 (329)
                      ..+.||||+|+..|+.+++++|+        +.|+++|.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  202 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  202 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCH
Confidence            46789999999999998888876        7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcC---CCCCcC--CCCcHHHHHHHcC---CHHHHHHHHHCCCCCCC--------CCCCCchH
Q 020239          186 LLEAIKCGHDGVTSLLVKEG---ASLNVD--DAGSFLCIAVARG---DSDLLKRVLSNGVDPNS--------RDYDHRTP  249 (329)
Q Consensus       186 l~~A~~~~~~~~v~~Ll~~~---~~~~~~--~~~~~l~~A~~~g---~~~~v~~Ll~~g~~~~~--------~~~~g~t~  249 (329)
                      ||+|+..|+.+++++|++++   .+++..  .+.||||+|+..+   +.+++++|++.|++++.        .|..|.||
T Consensus       203 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~  282 (373)
T 2fo1_E          203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  282 (373)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCH
Confidence            99999999999999999986   566654  4779999999998   89999999999999886        67799999


Q ss_pred             HHHHHHhCcHHHHHHHHHCC-CCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--------cccccchhHHHH
Q 020239          250 LHVAASEGLYLMAKLLLEAG-ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE--------FHYCSQGMIGIA  320 (329)
Q Consensus       250 L~~A~~~~~~~iv~~Ll~~g-~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~--------~~~~~~~~~~~~  320 (329)
                      ||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.++|++|+++|+.....        ..++..++.+++
T Consensus       283 Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv  362 (373)
T 2fo1_E          283 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV  362 (373)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999875 999999999999999999999999999999999865432        224566899999


Q ss_pred             Hhhhc
Q 020239          321 ENLLL  325 (329)
Q Consensus       321 ~~l~~  325 (329)
                      ++|+.
T Consensus       363 ~~Ll~  367 (373)
T 2fo1_E          363 DIFDR  367 (373)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            99975

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=5.2e-36  Score=260.39  Aligned_cols=212  Identities=30%  Similarity=0.416  Sum_probs=186.0

Q ss_pred             chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHc
Q 020239          113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  192 (329)
Q Consensus       113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  192 (329)
                      +..+.++|+.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~  116 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHH-CCCCC--------------------------CCCC
Q 020239          193 GHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLS-NGVDP--------------------------NSRD  243 (329)
Q Consensus       193 ~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~-~g~~~--------------------------~~~~  243 (329)
                      |+.+++++|+++|++++..+  +.||||+|+..++.+++++++. .+.++                          ...+
T Consensus       117 g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  196 (299)
T 1s70_B          117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA  196 (299)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred             CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhc
Confidence            99999999999999888765  6799999999999999988774 24332                          3356


Q ss_pred             CCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-------cccccchh
Q 020239          244 YDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE-------FHYCSQGM  316 (329)
Q Consensus       244 ~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~-------~~~~~~~~  316 (329)
                      ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++....       ...+..+.
T Consensus       197 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~  276 (299)
T 1s70_B          197 KSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDI  276 (299)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGG
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999998864322       33344556


Q ss_pred             HHHHHhhh
Q 020239          317 IGIAENLL  324 (329)
Q Consensus       317 ~~~~~~l~  324 (329)
                      +++++.++
T Consensus       277 ~~~l~~l~  284 (299)
T 1s70_B          277 LGYLEELQ  284 (299)
T ss_dssp             GHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666554

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.2e-35  Score=236.04  Aligned_cols=144  Identities=35%  Similarity=0.437  Sum_probs=115.8

Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHH
Q 020239          151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLK  230 (329)
Q Consensus       151 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~  230 (329)
                      ++|+.|++.|+.++|++|+++|++++.+|..|.||||+|+..+                               +.++++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~-------------------------------~~~~~~   54 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENG-------------------------------HKEVVK   54 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT-------------------------------CHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC-------------------------------CHHHHH
Confidence            3566777777777777777777777777666666666665554                               455555


Q ss_pred             HHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 020239          231 RVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFH  310 (329)
Q Consensus       231 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~~  310 (329)
                      +|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++......
T Consensus        55 ~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~  134 (169)
T 4gpm_A           55 LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDS  134 (169)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             HHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            55666677788899999999999999999999999999999999999999999999999999999999999986543322


Q ss_pred             --------cccchhHHHHHhhhc
Q 020239          311 --------YCSQGMIGIAENLLL  325 (329)
Q Consensus       311 --------~~~~~~~~~~~~l~~  325 (329)
                              ++..++.+++++|+.
T Consensus       135 ~G~TpL~~A~~~g~~~iv~~Ll~  157 (169)
T 4gpm_A          135 DGRTPLDLAREHGNEEVVKLLEK  157 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHH
Confidence                    356688999999875

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=5.5e-36  Score=249.14  Aligned_cols=201  Identities=25%  Similarity=0.267  Sum_probs=181.2

Q ss_pred             cCCHHHHHHHHHcCCCCCCC-CCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020239          126 HGDLYQLKGLIRAGADLNKT-DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKE  204 (329)
Q Consensus       126 ~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  204 (329)
                      .|+.+++++|++.|++++.. +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            36788999999999998765 78999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCCcC--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCc
Q 020239          205 GA-SLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT  281 (329)
Q Consensus       205 ~~-~~~~~--~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t  281 (329)
                      +. +++..  .+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  160 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREET  160 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcC
Confidence            76 55554  4679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccc--------cccccchhHHHHHhhhcC
Q 020239          282 PLDEGRMCGNKNLIKLLEDAKCTQLSE--------FHYCSQGMIGIAENLLLL  326 (329)
Q Consensus       282 ~l~~A~~~~~~~iv~~L~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~  326 (329)
                      |||+|+..|+.+++++|+++|+.....        ..+...++.+++++|+.-
T Consensus       161 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~  213 (223)
T 2f8y_A          161 PLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY  213 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHc
Confidence            999999999999999999998865332        124566899999999853

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.8e-35  Score=260.18  Aligned_cols=215  Identities=28%  Similarity=0.326  Sum_probs=194.9

Q ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239          112 HEAELALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  190 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  190 (329)
                      .+..+.++|+.|+..|+.+.++.|+.. +.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus        20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   99 (351)
T 3utm_A           20 TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC   99 (351)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             eccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence            455677999999999999999999975 8899999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-------------------------
Q 020239          191 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD-------------------------  243 (329)
Q Consensus       191 ~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-------------------------  243 (329)
                      ..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++..+                         
T Consensus       100 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~  179 (351)
T 3utm_A          100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG  179 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcc
Confidence            9999999999999999998765  6699999999999999999999999987654                         


Q ss_pred             -----------------------------CCCchHHHHHHHh---CcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCC
Q 020239          244 -----------------------------YDHRTPLHVAASE---GLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN  291 (329)
Q Consensus       244 -----------------------------~~g~t~L~~A~~~---~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  291 (329)
                                                   ..|.||||+|+..   +..+++++|+++|++++.+|..|+||||+|+..|+
T Consensus       180 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  259 (351)
T 3utm_A          180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH  259 (351)
T ss_dssp             HHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             cHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCC
Confidence                                         5567899999998   66899999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCcccc--------ccccchhHHHHHhhhcC
Q 020239          292 KNLIKLLEDAKCTQLSEF--------HYCSQGMIGIAENLLLL  326 (329)
Q Consensus       292 ~~iv~~L~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~  326 (329)
                      .+++++|+++|+..-...        .++..++.+++++|+..
T Consensus       260 ~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  302 (351)
T 3utm_A          260 NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY  302 (351)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            999999999988653332        24566899999999863

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.9e-36  Score=261.94  Aligned_cols=187  Identities=28%  Similarity=0.389  Sum_probs=168.7

Q ss_pred             hhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 020239          114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  193 (329)
Q Consensus       114 ~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  193 (329)
                      ..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..+
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  150 (299)
T 1s70_B           71 VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA  150 (299)
T ss_dssp             TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcc
Confidence            34569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHc-CCCCCc----------------------------CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q 020239          194 HDGVTSLLVKE-GASLNV----------------------------DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDY  244 (329)
Q Consensus       194 ~~~~v~~Ll~~-~~~~~~----------------------------~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~  244 (329)
                      +.+++++++.. +.+++.                            ..+.||||+|+..|+.+++++|++.|++++.+|.
T Consensus       151 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~  230 (299)
T 1s70_B          151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY  230 (299)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT
T ss_pred             hHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCC
Confidence            99999887753 444321                            3577999999999999999999999999999999


Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 020239          245 DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  300 (329)
Q Consensus       245 ~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~  300 (329)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+......+.+++.+
T Consensus       231 ~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~l~~~  286 (299)
T 1s70_B          231 DGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKK  286 (299)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHHHHHH
T ss_pred             CCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999977544444444433

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.3e-36  Score=260.89  Aligned_cols=196  Identities=21%  Similarity=0.206  Sum_probs=174.2

Q ss_pred             ccchhhhHHHHHHHHcCCHHHHHHHHH----cCCCCC----CCCCCCChHHHHHHHc---CcHHHHHHHHhcCCCc----
Q 020239          111 KHEAELALRFNSAAYHGDLYQLKGLIR----AGADLN----KTDYDGRSPLHLATSR---GYEDITLFLIQKGVDI----  175 (329)
Q Consensus       111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~----~~~~~~----~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~----  175 (329)
                      ..+..+.++||.|+..|+.++|+.|++    .+.+++    ..+..|.||||+|+..   |+.+++++|+++|+++    
T Consensus         8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~   87 (273)
T 2pnn_A            8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK   87 (273)
T ss_dssp             ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred             CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence            355567899999999999999998887    456665    4578999999999987   9999999999998652    


Q ss_pred             ---cc----cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC----------------CCcHHHHHHHcCCHHHHHHH
Q 020239          176 ---NI----KDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD----------------AGSFLCIAVARGDSDLLKRV  232 (329)
Q Consensus       176 ---~~----~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~----------------~~~~l~~A~~~g~~~~v~~L  232 (329)
                         +.    .|..|.||||+|+..|+.+++++|+++|++++..+                +.||||+|+..|+.+++++|
T Consensus        88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  167 (273)
T 2pnn_A           88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL  167 (273)
T ss_dssp             HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH
T ss_pred             HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence               22    56689999999999999999999999999998765                67999999999999999999


Q ss_pred             HH---CCCCCCCCCCCCchHHHHHHHhCc---------HHHHHHHHHCCCCcc-------CCCCCCCcHHHHHHHcCCHH
Q 020239          233 LS---NGVDPNSRDYDHRTPLHVAASEGL---------YLMAKLLLEAGASVF-------TKDRWGNTPLDEGRMCGNKN  293 (329)
Q Consensus       233 l~---~g~~~~~~~~~g~t~L~~A~~~~~---------~~iv~~Ll~~g~~~~-------~~~~~g~t~l~~A~~~~~~~  293 (329)
                      ++   .|++++.+|..|+||||+|+..|+         .+++++|+++|++++       .+|..|+||||+|+..|+.+
T Consensus       168 l~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~  247 (273)
T 2pnn_A          168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG  247 (273)
T ss_dssp             HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             HhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHH
Confidence            99   999999999999999999999998         899999999999986       58999999999999999999


Q ss_pred             HHHHHHHcCCCCc
Q 020239          294 LIKLLEDAKCTQL  306 (329)
Q Consensus       294 iv~~L~~~~~~~~  306 (329)
                      ++++|+++|+...
T Consensus       248 iv~~Ll~~ga~dp  260 (273)
T 2pnn_A          248 VLAYILQREIHEP  260 (273)
T ss_dssp             HHHHHHHHHTC--
T ss_pred             HHHHHHHCCCCCc
Confidence            9999999999543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.1e-36  Score=263.02  Aligned_cols=184  Identities=17%  Similarity=0.187  Sum_probs=173.8

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCC-CcHHHHHHHcCC
Q 020239          116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG-NTPLLEAIKCGH  194 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~l~~A~~~~~  194 (329)
                      +.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+
T Consensus        62 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~  141 (285)
T 3kea_A           62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLND  141 (285)
T ss_dssp             TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCC
Confidence            5699999999999999999999999999999999999999999999999999999999999999999 799999999999


Q ss_pred             HHHHHHHHHcCCCCCcC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchH-HHHHHHhCcHHHHHHHHHCCCCc
Q 020239          195 DGVTSLLVKEGASLNVD-DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTP-LHVAASEGLYLMAKLLLEAGASV  272 (329)
Q Consensus       195 ~~~v~~Ll~~~~~~~~~-~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~iv~~Ll~~g~~~  272 (329)
                      .+++++|+++|++.... .+.||||+|+..|+.+++++|+++|++++.+|..|+|| ||+|+..|+.+++++|+++|+++
T Consensus       142 ~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~  221 (285)
T 3kea_A          142 VSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI  221 (285)
T ss_dssp             HHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCS
T ss_pred             HHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999887555 67799999999999999999999999999999999998 99999999999999999999999


Q ss_pred             cCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 020239          273 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL  306 (329)
Q Consensus       273 ~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~  306 (329)
                      +.+|.       .|+..|+.+++++|+++|+...
T Consensus       222 ~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~  248 (285)
T 3kea_A          222 YSANL-------ENVLLDDAEIAKMIIEKHVEYK  248 (285)
T ss_dssp             TTTTG-------GGGTTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCh-------hhhhcCCHHHHHHHHHcCCCCC
Confidence            98873       5677999999999999987543

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=4e-36  Score=255.96  Aligned_cols=192  Identities=20%  Similarity=0.169  Sum_probs=172.7

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHH----HcCCCCCCCC----CCCChHHHHHH---HcCcHHHHHHHHhcCCC---------
Q 020239          115 ELALRFNSAAYHGDLYQLKGLI----RAGADLNKTD----YDGRSPLHLAT---SRGYEDITLFLIQKGVD---------  174 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~~v~~Ll----~~~~~~~~~~----~~g~t~L~~A~---~~g~~~~v~~Ll~~g~~---------  174 (329)
                      .+.++|+.|+..|+.+.++.|+    +.|.+++..+    ..|.||||+|+   ..|+.+++++|++.|++         
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            3458999999999999655555    4899988665    77999999999   67999999999998743         


Q ss_pred             --ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC----------------CCcHHHHHHHcCCHHHHHHHHH--
Q 020239          175 --INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD----------------AGSFLCIAVARGDSDLLKRVLS--  234 (329)
Q Consensus       175 --~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~----------------~~~~l~~A~~~g~~~~v~~Ll~--  234 (329)
                        .+..|..|.||||+|+..|+.+++++|+++|++++..+                +.||||+|+..|+.+++++|++  
T Consensus        84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence              34445589999999999999999999999999999876                7799999999999999999999  


Q ss_pred             -CCCCCCCCCCCCchHHHHHHHhCc---------HHHHHHHHHCCCCc-------cCCCCCCCcHHHHHHHcCCHHHHHH
Q 020239          235 -NGVDPNSRDYDHRTPLHVAASEGL---------YLMAKLLLEAGASV-------FTKDRWGNTPLDEGRMCGNKNLIKL  297 (329)
Q Consensus       235 -~g~~~~~~~~~g~t~L~~A~~~~~---------~~iv~~Ll~~g~~~-------~~~~~~g~t~l~~A~~~~~~~iv~~  297 (329)
                       .|++++.+|..|+||||+|+..++         .+++++|+++|+++       +.+|..|+||||+|+..|+.+++++
T Consensus       164 ~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~  243 (260)
T 3jxi_A          164 HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH  243 (260)
T ss_dssp             SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHH
Confidence             999999999999999999999887         79999999999998       6799999999999999999999999


Q ss_pred             HHHcCCCCc
Q 020239          298 LEDAKCTQL  306 (329)
Q Consensus       298 L~~~~~~~~  306 (329)
                      |+++|+...
T Consensus       244 Ll~~g~~~~  252 (260)
T 3jxi_A          244 IIRREIADA  252 (260)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHhCCCcc
Confidence            999987543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.2e-35  Score=265.42  Aligned_cols=189  Identities=22%  Similarity=0.274  Sum_probs=172.2

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHHc----CCCCCC-----------------CCCCCChHHHHHHHcC--cHHHHHHHHhc
Q 020239          115 ELALRFNSAAYHGDLYQLKGLIRA----GADLNK-----------------TDYDGRSPLHLATSRG--YEDITLFLIQK  171 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~~v~~Ll~~----~~~~~~-----------------~~~~g~t~L~~A~~~g--~~~~v~~Ll~~  171 (329)
                      .+.||||+|+..|+.+++++|++.    |.+++.                 .+..|.||||+|+..|  +.+++++|+++
T Consensus        83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~  162 (364)
T 3ljn_A           83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL  162 (364)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence            456999999999999999999998    777766                 7888999999999999  99999999999


Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q 020239          172 GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS-----LNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDY  244 (329)
Q Consensus       172 g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~-----~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~  244 (329)
                      |++++..|..|.||||+|+..|+.+++++|++.|++     ++..+  +.||||+|+..|+.+++++|+++|++++.+|.
T Consensus       163 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~  242 (364)
T 3ljn_A          163 GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN  242 (364)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCT
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            999999999999999999999999999999999888     76654  67999999999999999999999999999999


Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHCCCCccC------------CCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239          245 DHRTPLHVAASEGLYLMAKLLLEAGASVFT------------KDRWGNTPLDEGRMCGNKNLIKLLEDAKC  303 (329)
Q Consensus       245 ~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~------------~~~~g~t~l~~A~~~~~~~iv~~L~~~~~  303 (329)
                      .|.||||+|+..|+.+++++|+++|++++.            .+..|+||++.|+..|+.+.+..|++.+.
T Consensus       243 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~  313 (364)
T 3ljn_A          243 EHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL  313 (364)
T ss_dssp             TSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHH
Confidence            999999999999999999999999876532            45578999999999998887777776643

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=3.3e-34  Score=246.35  Aligned_cols=186  Identities=22%  Similarity=0.277  Sum_probs=175.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCChHHHHHHHcCcHHHHHHHHhcCC-CccccCCCCCcHHHHHH----
Q 020239          118 LRFNSAAYHGDLYQLKGLIRAGAD--LNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI----  190 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~----  190 (329)
                      +++|.|+..|+.+.++.+++.+.+  +|.+|..|.||||+|+..|+.+++++|+++|+ +++..+..|.||||+|+    
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~  157 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATL  157 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHh
Confidence            567889999999999999988766  88899999999999999999999999999998 99999999999999999    


Q ss_pred             -HcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHH
Q 020239          191 -KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE  267 (329)
Q Consensus       191 -~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  267 (329)
                       ..++.+++++|++.|...+..+  +.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  237 (276)
T 4hbd_A          158 KTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA  237 (276)
T ss_dssp             CSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             hhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence             6688999999999998777654  6799999999999999999999999999999999999999999999999999999


Q ss_pred             -CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239          268 -AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  303 (329)
Q Consensus       268 -~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~  303 (329)
                       .|++++.+|..|+|||++|+..|+.+++++|+++..
T Consensus       238 ~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          238 VPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             STTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             cCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence             899999999999999999999999999999998864

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=3.5e-33  Score=226.98  Aligned_cols=160  Identities=29%  Similarity=0.394  Sum_probs=138.6

Q ss_pred             CCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHH
Q 020239          143 NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIA  220 (329)
Q Consensus       143 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A  220 (329)
                      |.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+  +.||||+|
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  108 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS  108 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            4567777888888888888888888888877777777778888888888888888888888877776654  56788888


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 020239          221 VARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  300 (329)
Q Consensus       221 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~  300 (329)
                      +..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|++
T Consensus       109 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  188 (192)
T 2rfm_A          109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTE  188 (192)
T ss_dssp             HHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence            88888888888888899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 020239          301 AK  302 (329)
Q Consensus       301 ~~  302 (329)
                      ++
T Consensus       189 ~~  190 (192)
T 2rfm_A          189 VR  190 (192)
T ss_dssp             HH
T ss_pred             cc
Confidence            75

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=4.2e-34  Score=239.98  Aligned_cols=178  Identities=22%  Similarity=0.250  Sum_probs=163.3

Q ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCC------ccccCCCCCcH
Q 020239          112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD------INIKDKFGNTP  185 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t~  185 (329)
                      .+..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|.+      ++..+..|.||
T Consensus        41 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~  120 (236)
T 1ikn_D           41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC  120 (236)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCH
Confidence            444567999999999999999999999999999999999999999999999999999999876      46778889999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcC---CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHH
Q 020239          186 LLEAIKCGHDGVTSLLVKEGASLNVD---DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMA  262 (329)
Q Consensus       186 l~~A~~~~~~~~v~~Ll~~~~~~~~~---~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv  262 (329)
                      ||+|+..|+.+++++|+++|++++..   .+.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus       121 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~  200 (236)
T 1ikn_D          121 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQ  200 (236)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHH
Confidence            99999999999999999999999876   457999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCcc--CCCCCCCcHHHHHHHc
Q 020239          263 KLLLEAGASVF--TKDRWGNTPLDEGRMC  289 (329)
Q Consensus       263 ~~Ll~~g~~~~--~~~~~g~t~l~~A~~~  289 (329)
                      ++|+++|++..  .++..|.||.+.+...
T Consensus       201 ~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          201 QQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             HHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             HHHHHcchhhhhcCCccchHHHHhhhccc
Confidence            99999999876  7788899988765543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=2.3e-32  Score=217.60  Aligned_cols=159  Identities=35%  Similarity=0.527  Sum_probs=126.2

Q ss_pred             chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHc
Q 020239          113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  192 (329)
Q Consensus       113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  192 (329)
                      .....++|+.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            33456778888888888888888888888888888888888888888888888888888888877777777777666665


Q ss_pred             CCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCc
Q 020239          193 GHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  272 (329)
Q Consensus       193 ~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~  272 (329)
                      |+.+++++                               |+++|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus        91 ~~~~~~~~-------------------------------Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  139 (169)
T 2y1l_E           91 GHLEIVEV-------------------------------LLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV  139 (169)
T ss_dssp             TCHHHHHH-------------------------------HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCHHHHHH-------------------------------HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            55555554                               45555666777888889999999999999999999999999


Q ss_pred             cCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020239          273 FTKDRWGNTPLDEGRMCGNKNLIKLLEDAK  302 (329)
Q Consensus       273 ~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~  302 (329)
                      +.+|..|.||+++|+..|+.+++++|++.|
T Consensus       140 ~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          140 NAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            888889999999999999999999998765

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-33  Score=248.70  Aligned_cols=176  Identities=20%  Similarity=0.175  Sum_probs=141.1

Q ss_pred             cccCc-cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCc---HHHHHHHHhcC-CCccccCCC
Q 020239          107 FHIGK-HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY---EDITLFLIQKG-VDINIKDKF  181 (329)
Q Consensus       107 ~~~~~-~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~g-~~~~~~~~~  181 (329)
                      ..++. .+..+.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+   .++++.|++++ .+++.+|..
T Consensus       121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~  200 (327)
T 1sw6_A          121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM  200 (327)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTT
T ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCC
Confidence            34444 56678899999999999999999999999999899999999999999888   67778887775 678888888


Q ss_pred             CCcHHHHHHH----cCCHHHHHHHHHc--------------------CCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHC
Q 020239          182 GNTPLLEAIK----CGHDGVTSLLVKE--------------------GASLNVDD--AGSFLCIAVARGDSDLLKRVLSN  235 (329)
Q Consensus       182 g~t~l~~A~~----~~~~~~v~~Ll~~--------------------~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~  235 (329)
                      |.||||+|+.    .|+.+++++|++.                    |++++..+  +.||||.|+.      +++|++.
T Consensus       201 g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~  274 (327)
T 1sw6_A          201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN  274 (327)
T ss_dssp             CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH
T ss_pred             CCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh
Confidence            9999999998    8888999999876                    66666554  5688998885      8888887


Q ss_pred             CCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcC
Q 020239          236 GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCG  290 (329)
Q Consensus       236 g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  290 (329)
                        +++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+++|
T Consensus       275 --~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          275 --MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             --TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             --CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence              58888889999999999999999999999999999999999999999988764

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=2.2e-32  Score=228.75  Aligned_cols=178  Identities=24%  Similarity=0.256  Sum_probs=161.0

Q ss_pred             CCChHHHHHHHcCcHHHHHHHHhc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-----c--CCCCcHHHH
Q 020239          148 DGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN-----V--DDAGSFLCI  219 (329)
Q Consensus       148 ~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~-----~--~~~~~~l~~  219 (329)
                      .|.||||+|+..|+.+++++|++. |++++.+|..|.||||+|+..|+.+++++|++.|+++.     .  ..+.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            488999999999999999999998 99999999999999999999999999999999988762     2  257799999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCC-------------CCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHH
Q 020239          220 AVARGDSDLLKRVLSNGVDPNSRDY-------------DHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG  286 (329)
Q Consensus       220 A~~~g~~~~v~~Ll~~g~~~~~~~~-------------~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A  286 (329)
                      |+..|+.+++++|++.|++++..+.             .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A  161 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL  161 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999998765             799999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHH----HHHHHcCCCCc------cc--------cccccchhHHHHHhhhc
Q 020239          287 RMCGNKNLI----KLLEDAKCTQL------SE--------FHYCSQGMIGIAENLLL  325 (329)
Q Consensus       287 ~~~~~~~iv----~~L~~~~~~~~------~~--------~~~~~~~~~~~~~~l~~  325 (329)
                      +..|+.+++    ++|+++|+...      ..        ..++..++.+++++|+.
T Consensus       162 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~  218 (232)
T 2rfa_A          162 ILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ  218 (232)
T ss_dssp             HTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999988    99999988542      11        22355688999999874

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=1.7e-32  Score=217.85  Aligned_cols=158  Identities=28%  Similarity=0.390  Sum_probs=111.7

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHH
Q 020239          117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  196 (329)
Q Consensus       117 ~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  196 (329)
                      .||||.|+..|+.+++++|++.|.+++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||         
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~---------   74 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALS---------   74 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH---------
T ss_pred             cchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHH---------
Confidence            35555555555555555555555555555555555555555555555555555555555555555555554         


Q ss_pred             HHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCC
Q 020239          197 VTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD  276 (329)
Q Consensus       197 ~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~  276 (329)
                                            +|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus        75 ----------------------~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  132 (167)
T 3v31_A           75 ----------------------LACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET  132 (167)
T ss_dssp             ----------------------HHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             ----------------------HHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence                                  5555555556666666667777888889999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239          277 RWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  305 (329)
Q Consensus       277 ~~g~t~l~~A~~~~~~~iv~~L~~~~~~~  305 (329)
                      ..|.||+++|+..|+.+++++|++++...
T Consensus       133 ~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A          133 DSGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            99999999999999999999998886643

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=1.2e-32  Score=219.86  Aligned_cols=164  Identities=26%  Similarity=0.343  Sum_probs=96.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHH
Q 020239          118 LRFNSAAYHGDLYQLKGLIRAGAD-LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  196 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  196 (329)
                      ++||.|+..|+.+++++|++.+.+ ++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   83 (172)
T 3v30_A            4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD   83 (172)
T ss_dssp             CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHH
Confidence            567777777777777777777655 6666777777777777777777777777777777777777777777776666666


Q ss_pred             HHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccC
Q 020239          197 VTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT  274 (329)
Q Consensus       197 ~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~  274 (329)
                      ++++|+++|++++..+  +.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++...
T Consensus        84 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~  163 (172)
T 3v30_A           84 IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ  163 (172)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhc
Confidence            6666666555544332  33444444444444444444444444444444444444444444444444444444444444


Q ss_pred             CCCCCCc
Q 020239          275 KDRWGNT  281 (329)
Q Consensus       275 ~~~~g~t  281 (329)
                      ++..|.|
T Consensus       164 ~~~~~~~  170 (172)
T 3v30_A          164 SNLVPAD  170 (172)
T ss_dssp             C------
T ss_pred             ccCCCCC
Confidence            4444443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=2.5e-32  Score=215.61  Aligned_cols=157  Identities=29%  Similarity=0.431  Sum_probs=117.5

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239          116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  195 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  195 (329)
                      ..++|+.|+..|+.+++++|++.|++++.++..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            3467777777777777777777777777777777777777777 777777777777777777666666666666655554


Q ss_pred             HHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCC-ccC
Q 020239          196 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS-VFT  274 (329)
Q Consensus       196 ~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~-~~~  274 (329)
                                                     +++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++ ++.
T Consensus        84 -------------------------------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  132 (162)
T 1ihb_A           84 -------------------------------DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH  132 (162)
T ss_dssp             -------------------------------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC
T ss_pred             -------------------------------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCC
Confidence                                           455555555666777778888888888888888888888888887 488


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239          275 KDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  304 (329)
Q Consensus       275 ~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~  304 (329)
                      +|..|.||||+|+..|+.+++++|+++|++
T Consensus       133 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          133 RNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            888888888888888888888888888863

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=5.5e-32  Score=213.67  Aligned_cols=146  Identities=25%  Similarity=0.271  Sum_probs=118.8

Q ss_pred             chhhhhhhhccccccccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcC
Q 020239           93 ESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG  172 (329)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  172 (329)
                      ........+...  ...+..+..+.||||.|+. |+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|
T Consensus        17 ~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   93 (162)
T 1ihb_A           17 DLEQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ   93 (162)
T ss_dssp             CHHHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            333333344333  3445567788999999999 9999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHH
Q 020239          173 VDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHV  252 (329)
Q Consensus       173 ~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  252 (329)
                      ++++.+|..|.||||+|+..|+.+++++|+++|++.                              ++.++..|.||||+
T Consensus        94 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------------------~~~~~~~g~t~l~~  143 (162)
T 1ihb_A           94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN------------------------------VGHRNHKGDTACDL  143 (162)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC------------------------------TTCCCTTSCCHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC------------------------------CCCcCCCCCcHHHH
Confidence            999999999999999988888887777777766542                              35567778888888


Q ss_pred             HHHhCcHHHHHHHHHCCCC
Q 020239          253 AASEGLYLMAKLLLEAGAS  271 (329)
Q Consensus       253 A~~~~~~~iv~~Ll~~g~~  271 (329)
                      |+..|+.+++++|+++|+|
T Consensus       144 A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          144 ARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHTTCHHHHHHHHHTC--
T ss_pred             HHHcCCHHHHHHHHHhCCC
Confidence            8888888888888888775

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=2.6e-31  Score=207.89  Aligned_cols=151  Identities=33%  Similarity=0.462  Sum_probs=124.0

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239          116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  195 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  195 (329)
                      ..++|+.|+..|+.+++++|++.|.+++ .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            3578888888888888888888887765 467788888888888888888888888888887777777777777665555


Q ss_pred             HHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCC
Q 020239          196 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK  275 (329)
Q Consensus       196 ~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~  275 (329)
                      +++++|                               +++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+
T Consensus        81 ~~v~~L-------------------------------l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  129 (153)
T 1awc_B           81 NIVEVL-------------------------------LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ  129 (153)
T ss_dssp             HHHHHH-------------------------------HTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHH-------------------------------HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence            555555                               4555566777888999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHH
Q 020239          276 DRWGNTPLDEGRMCGNKNLIKLL  298 (329)
Q Consensus       276 ~~~g~t~l~~A~~~~~~~iv~~L  298 (329)
                      |..|.||+++|+..|+.+++++|
T Consensus       130 ~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          130 SKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999987

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.98  E-value=1.6e-32  Score=235.46  Aligned_cols=172  Identities=20%  Similarity=0.276  Sum_probs=144.2

Q ss_pred             chhhhHHHHHHHHc---CCHHHHHHHHHcCCCC-------C----CCCCCCChHHHHHHHcCcHHHHHHHHhcCCCcccc
Q 020239          113 EAELALRFNSAAYH---GDLYQLKGLIRAGADL-------N----KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK  178 (329)
Q Consensus       113 ~~~~~~~l~~A~~~---g~~~~v~~Ll~~~~~~-------~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~  178 (329)
                      +..+.||||+|+..   |+.+++++|++.|+++       +    ..|..|.||||+|+..|+.+++++|+++|++++..
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~  130 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAA  130 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcc
Confidence            34456999999987   9999999999987542       2    25678999999999999999999999999999998


Q ss_pred             CC--------------CCCcHHHHHHHcCCHHHHHHHHH---cCCCCCcCC--CCcHHHHHHHcCC---------HHHHH
Q 020239          179 DK--------------FGNTPLLEAIKCGHDGVTSLLVK---EGASLNVDD--AGSFLCIAVARGD---------SDLLK  230 (329)
Q Consensus       179 ~~--------------~g~t~l~~A~~~~~~~~v~~Ll~---~~~~~~~~~--~~~~l~~A~~~g~---------~~~v~  230 (329)
                      +.              .|.||||+|+..|+.+++++|++   .|++++..+  +.||||+|+..|+         .++++
T Consensus       131 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~  210 (273)
T 2pnn_A          131 ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYN  210 (273)
T ss_dssp             BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHH
Confidence            87              79999999999999999999999   899998765  6799999999998         89999


Q ss_pred             HHHHCCCCCC-------CCCCCCchHHHHHHHhCcHHHHHHHHHCCC-CccCCCCCCCcHHH
Q 020239          231 RVLSNGVDPN-------SRDYDHRTPLHVAASEGLYLMAKLLLEAGA-SVFTKDRWGNTPLD  284 (329)
Q Consensus       231 ~Ll~~g~~~~-------~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~-~~~~~~~~g~t~l~  284 (329)
                      +|++.|++++       .+|..|+||||+|+..|+.+++++|+++|+ |+......+.+|-+
T Consensus       211 ~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          211 EILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence            9999999987       489999999999999999999999999999 88777777766643

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.98  E-value=1.2e-31  Score=214.03  Aligned_cols=160  Identities=26%  Similarity=0.308  Sum_probs=150.2

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCC
Q 020239          149 GRSPLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGD  225 (329)
Q Consensus       149 g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~  225 (329)
                      +.||||.|+..|+.+++++|++.+.+ ++..+..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            45899999999999999999999877 88889999999999999999999999999999988754  6799999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239          226 SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  305 (329)
Q Consensus       226 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~  305 (329)
                      .+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++++..
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKL  161 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998865


Q ss_pred             ccc
Q 020239          306 LSE  308 (329)
Q Consensus       306 ~~~  308 (329)
                      ...
T Consensus       162 ~~~  164 (172)
T 3v30_A          162 FQS  164 (172)
T ss_dssp             SCC
T ss_pred             hcc
Confidence            444

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.98  E-value=1.5e-31  Score=212.37  Aligned_cols=134  Identities=28%  Similarity=0.363  Sum_probs=114.4

Q ss_pred             ccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHH
Q 020239          108 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLL  187 (329)
Q Consensus       108 ~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~  187 (329)
                      ..+..+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  107 (167)
T 3v31_A           28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL  107 (167)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHH
Confidence            35556778899999999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHH
Q 020239          188 EAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE  267 (329)
Q Consensus       188 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  267 (329)
                      +|+..|+.+++++|++                               +|++++.++..|.||||+|+..|+.+++++|++
T Consensus       108 ~A~~~~~~~~v~~Ll~-------------------------------~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A          108 YAVHGNHVKCVKMLLE-------------------------------SGADPTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             HHHHTTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHH-------------------------------cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            8877666666555555                               455666677788888888888888888888888


Q ss_pred             CCCCc
Q 020239          268 AGASV  272 (329)
Q Consensus       268 ~g~~~  272 (329)
                      ++.+.
T Consensus       157 ~~~~~  161 (167)
T 3v31_A          157 HLLKL  161 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76544

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.98  E-value=8.6e-32  Score=218.72  Aligned_cols=161  Identities=25%  Similarity=0.290  Sum_probs=153.5

Q ss_pred             cCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHH
Q 020239          109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLE  188 (329)
Q Consensus       109 ~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~  188 (329)
                      .+..+..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            34566778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHH
Q 020239          189 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL  266 (329)
Q Consensus       189 A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll  266 (329)
                      |+..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll  187 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT  187 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHH
Confidence            999999999999999999998765  679999999999999999999999999999999999999999999999999999


Q ss_pred             HCC
Q 020239          267 EAG  269 (329)
Q Consensus       267 ~~g  269 (329)
                      ++|
T Consensus       188 ~~~  190 (192)
T 2rfm_A          188 EVR  190 (192)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            864

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=2.6e-31  Score=210.55  Aligned_cols=159  Identities=33%  Similarity=0.459  Sum_probs=122.0

Q ss_pred             chhhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q 020239          113 EAELALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  191 (329)
Q Consensus       113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  191 (329)
                      +..+.++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            34556777777777777777777763 45566666677777777777777777777777777777777666666666665


Q ss_pred             cCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCC
Q 020239          192 CGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  271 (329)
Q Consensus       192 ~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~  271 (329)
                      .|+                               .+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        85 ~~~-------------------------------~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  133 (165)
T 3twr_A           85 YGH-------------------------------YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD  133 (165)
T ss_dssp             TTC-------------------------------HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cCc-------------------------------HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            554                               5555555556667777888899999999999999999999999999


Q ss_pred             ccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239          272 VFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  303 (329)
Q Consensus       272 ~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~  303 (329)
                      ++.+|..|.||+++|+. ++.+++++|+++|+
T Consensus       134 ~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          134 PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            99999999999999776 89999999998875

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=9.3e-31  Score=213.95  Aligned_cols=162  Identities=25%  Similarity=0.411  Sum_probs=151.6

Q ss_pred             ccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHH-hcCCCccccCCCCCcHH
Q 020239          108 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPL  186 (329)
Q Consensus       108 ~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~l  186 (329)
                      ..+..+..+.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+ ..+.+++..+..|.|||
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (201)
T 3hra_A           31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL  110 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHH
Confidence            34455667889999999999999999999999999999999999999999999999999999 56779999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcC-CCCCcCC--CCcHHHHHHHcCC-----HHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCc
Q 020239          187 LEAIKCGHDGVTSLLVKEG-ASLNVDD--AGSFLCIAVARGD-----SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL  258 (329)
Q Consensus       187 ~~A~~~~~~~~v~~Ll~~~-~~~~~~~--~~~~l~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  258 (329)
                      |+|+..|+.+++++|++.| .+++..+  +.||||+|+..++     .+++++|+++|++++.+|..|.||||+|+..|+
T Consensus       111 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  190 (201)
T 3hra_A          111 IPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY  190 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCC
Confidence            9999999999999999998 7777655  6799999999998     999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCC
Q 020239          259 YLMAKLLLEAG  269 (329)
Q Consensus       259 ~~iv~~Ll~~g  269 (329)
                      .+++++|+++|
T Consensus       191 ~~~~~~Ll~~G  201 (201)
T 3hra_A          191 TEISKILAQYN  201 (201)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HhHHHHHHhcC
Confidence            99999999886

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=8.1e-32  Score=228.84  Aligned_cols=178  Identities=23%  Similarity=0.217  Sum_probs=158.8

Q ss_pred             CCChHHHHHHHcCcHH----HHHHHHhcCCCccc----cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCc------
Q 020239          148 DGRSPLHLATSRGYED----ITLFLIQKGVDINI----KDKFGNTPLLEAIKC---GHDGVTSLLVKEGASLNV------  210 (329)
Q Consensus       148 ~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~g~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~------  210 (329)
                      .|.||||.|+..|+.+    ++++|+++|++++.    .|..|.||||+|+..   |+.+++++|++.|++++.      
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            4789999999999997    66777789999998    899999999999999   999999999999877653      


Q ss_pred             -------CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-------------CchHHHHHHHhCcHHHHHHHHH---
Q 020239          211 -------DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYD-------------HRTPLHVAASEGLYLMAKLLLE---  267 (329)
Q Consensus       211 -------~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-------------g~t~L~~A~~~~~~~iv~~Ll~---  267 (329)
                             ..+.||||+|+..|+.+++++|++.|++++.++..             |.||||+|+..|+.+++++|++   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                   34789999999999999999999999999999886             9999999999999999999999   


Q ss_pred             CCCCccCCCCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCC-------ccc--------cccccchhHHHHHhh
Q 020239          268 AGASVFTKDRWGNTPLDEGRM--CGNKN-------LIKLLEDAKCTQ-------LSE--------FHYCSQGMIGIAENL  323 (329)
Q Consensus       268 ~g~~~~~~~~~g~t~l~~A~~--~~~~~-------iv~~L~~~~~~~-------~~~--------~~~~~~~~~~~~~~l  323 (329)
                      +|++++.+|..|+||||+|+.  .++.+       ++++|+++|+..       ...        ..++..++.+++++|
T Consensus       161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L  240 (256)
T 2etb_A          161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI  240 (256)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence            999999999999999999999  88888       999999987754       111        224566899999998


Q ss_pred             hc
Q 020239          324 LL  325 (329)
Q Consensus       324 ~~  325 (329)
                      +.
T Consensus       241 l~  242 (256)
T 2etb_A          241 LQ  242 (256)
T ss_dssp             HH
T ss_pred             Hh
Confidence            74

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=7.6e-31  Score=210.74  Aligned_cols=159  Identities=26%  Similarity=0.328  Sum_probs=104.1

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 020239          116 LALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  194 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  194 (329)
                      ..++|+.|+..|+.+++++|++. +.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH   84 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            44667777777777777777776 45677777777777777777777777777777777777777777777777666666


Q ss_pred             HHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccC
Q 020239          195 DGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT  274 (329)
Q Consensus       195 ~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~  274 (329)
                      .+++++|+++|+                               +++.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus        85 ~~~v~~Ll~~g~-------------------------------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  133 (179)
T 3f6q_A           85 RDIVQKLLQYKA-------------------------------DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI  133 (179)
T ss_dssp             HHHHHHHHHTTC-------------------------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB
T ss_pred             HHHHHHHHHcCC-------------------------------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch
Confidence            666665555554                               4555555555666666666666666666666666655


Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239          275 KDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  305 (329)
Q Consensus       275 ~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~  305 (329)
                      +|..|.||+++|+..++.+++++|+++|+..
T Consensus       134 ~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A          134 CNKYGEMPVDKAKAPLRELLRERAEKMGQNL  164 (179)
T ss_dssp             CCTTSCCGGGGSCHHHHHHHHHHHHHTTCCC
T ss_pred             hccCCCCcHHHHHHHHHHHHHHHHHHhhcCc
Confidence            5555666666665555556666666555543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.1e-30  Score=209.70  Aligned_cols=146  Identities=21%  Similarity=0.179  Sum_probs=110.1

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHH
Q 020239          149 GRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSD  227 (329)
Q Consensus       149 g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~  227 (329)
                      +.++||.|+..|+.+++++|++. +.+++..+..|.||||+|                               +..|+.+
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-------------------------------~~~~~~~   53 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWA-------------------------------CREGRSA   53 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHH-------------------------------HHTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHH-------------------------------HHcCcHH
Confidence            44556666666666666666655 444555555555555554                               5555566


Q ss_pred             HHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 020239          228 LLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS  307 (329)
Q Consensus       228 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~  307 (329)
                      ++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+....
T Consensus        54 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  133 (179)
T 3f6q_A           54 VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI  133 (179)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch
Confidence            66666666777788889999999999999999999999999999999999999999999999999999999999886532


Q ss_pred             c--------cccccchhHHHHHhhhc
Q 020239          308 E--------FHYCSQGMIGIAENLLL  325 (329)
Q Consensus       308 ~--------~~~~~~~~~~~~~~l~~  325 (329)
                      .        ..+...+..+++++|+.
T Consensus       134 ~~~~g~tpl~~A~~~~~~~~~~~L~~  159 (179)
T 3f6q_A          134 CNKYGEMPVDKAKAPLRELLRERAEK  159 (179)
T ss_dssp             CCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred             hccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            2        22345578888888875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=3.9e-30  Score=201.74  Aligned_cols=152  Identities=25%  Similarity=0.416  Sum_probs=122.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239          117 ALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  195 (329)
Q Consensus       117 ~~~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  195 (329)
                      .++|+.|+..|+.+++++|++. +.+++..+..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   81 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcH
Confidence            4778888888888888888877 34777778888888888 778888888888888888887777777777766665555


Q ss_pred             HHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCC
Q 020239          196 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK  275 (329)
Q Consensus       196 ~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~  275 (329)
                      +++++|                               ++.|++++.+|..|.||||+|+..|+.+++++|+++ ++++.+
T Consensus        82 ~~v~~L-------------------------------l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~  129 (156)
T 1bd8_A           82 DTLKVL-------------------------------VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRR  129 (156)
T ss_dssp             HHHHHH-------------------------------HHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCC
T ss_pred             HHHHHH-------------------------------HHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCc
Confidence            555544                               555566777788899999999999999999999988 889999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020239          276 DRWGNTPLDEGRMCGNKNLIKLLEDA  301 (329)
Q Consensus       276 ~~~g~t~l~~A~~~~~~~iv~~L~~~  301 (329)
                      |..|.|||++|+..|+.+++++|+++
T Consensus       130 ~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          130 DARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            99999999999999999999999875

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=5.5e-34  Score=238.10  Aligned_cols=185  Identities=21%  Similarity=0.210  Sum_probs=169.8

Q ss_pred             ccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239          111 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  190 (329)
Q Consensus       111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  190 (329)
                      ..+..+.++|+.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~   95 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAA   95 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCcC---CCCcHHHHH--HHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHH
Q 020239          191 KCGHDGVTSLLVKEGASLNVD---DAGSFLCIA--VARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  265 (329)
Q Consensus       191 ~~~~~~~v~~Ll~~~~~~~~~---~~~~~l~~A--~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~L  265 (329)
                      ..|+.+++++|++.|++++..   ++.||||+|  +..|+.+++++|++.|++++..+..|.||++.++..+   ..++|
T Consensus        96 ~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~---~~~~l  172 (229)
T 2vge_A           96 SCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF---GDELS  172 (229)
T ss_dssp             HTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSS---TTBCC
T ss_pred             HcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcc---ccccC
Confidence            999999999999999999875   577999999  9999999999999999999999999999998655544   33678


Q ss_pred             HHCCCC--ccCCCCCCCcHHHHHHHcCCHHHHHHH
Q 020239          266 LEAGAS--VFTKDRWGNTPLDEGRMCGNKNLIKLL  298 (329)
Q Consensus       266 l~~g~~--~~~~~~~g~t~l~~A~~~~~~~iv~~L  298 (329)
                      ++.|++  ++.+|..|+||||+|+..|+.++|+.+
T Consensus       173 l~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          173 FREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             BCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             ccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence            889988  678899999999999999999998753

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=9.5e-31  Score=230.24  Aligned_cols=183  Identities=19%  Similarity=0.204  Sum_probs=151.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC--
Q 020239          118 LRFNSAAYHGDLYQLKGLIRAGADLNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH--  194 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~--  194 (329)
                      ..++.|+..+..+++++|++.|+++|. +|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+  
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHH
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccc
Confidence            446788888888999999999999999 89999999999999999999999999999999999999999999999998  


Q ss_pred             -HHHHHHHHHcC-CCCCcC--CCCcHHHHHHH----cCCHHHHHHHHHC--------------------CCCCCCCCCCC
Q 020239          195 -DGVTSLLVKEG-ASLNVD--DAGSFLCIAVA----RGDSDLLKRVLSN--------------------GVDPNSRDYDH  246 (329)
Q Consensus       195 -~~~v~~Ll~~~-~~~~~~--~~~~~l~~A~~----~g~~~~v~~Ll~~--------------------g~~~~~~~~~g  246 (329)
                       .++++.|++.+ .+++..  .+.||||+|+.    .|+.+++++|++.                    |++++.++..|
T Consensus       179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g  258 (327)
T 1sw6_A          179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER  258 (327)
T ss_dssp             HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred             cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence             67788888775 455544  47799999999    9999999999986                    89999999999


Q ss_pred             chHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 020239          247 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE  308 (329)
Q Consensus       247 ~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~  308 (329)
                      .||||+|+.      +++|+++  +++.+|..|+||||+|+..|+.++|++|+++|+.....
T Consensus       259 ~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~  312 (327)
T 1sw6_A          259 KDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA  312 (327)
T ss_dssp             -CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred             CChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence            999999985      8999998  58889999999999999999999999999999975443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=9e-31  Score=220.20  Aligned_cols=187  Identities=16%  Similarity=0.098  Sum_probs=134.1

Q ss_pred             hhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcC
Q 020239          114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCG  193 (329)
Q Consensus       114 ~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  193 (329)
                      ..+.|||+.|++.|+.++++.|+++|++++.. ..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            34679999999999999999999999998754 77899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCc-hHHHHH--HHhCcHHHHHHHHHC
Q 020239          194 HDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHR-TPLHVA--ASEGLYLMAKLLLEA  268 (329)
Q Consensus       194 ~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A--~~~~~~~iv~~Ll~~  268 (329)
                      +.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|. ||||+|  +..|+.+++++|+++
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence            9999999999999988765  66999999999999999999999999999998777 999999  788899999999999


Q ss_pred             CCCccCC---------CCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239          269 GASVFTK---------DRWGNTPLDEGRMCGNKNLIKLLEDAKC  303 (329)
Q Consensus       269 g~~~~~~---------~~~g~t~l~~A~~~~~~~iv~~L~~~~~  303 (329)
                      |++++..         +..+.++.++|...|.  +++.|.+.+.
T Consensus       162 ~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~  203 (239)
T 1ycs_B          162 QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDE  203 (239)
T ss_dssp             HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTT
T ss_pred             hhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCC
Confidence            8887665         5567888888888776  4555544443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=3.1e-29  Score=215.35  Aligned_cols=161  Identities=22%  Similarity=0.293  Sum_probs=152.1

Q ss_pred             cCccchhhhHHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCChHHHHHH-----HcCcHHHHHHHHhcCCCccccCCCC
Q 020239          109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGA-DLNKTDYDGRSPLHLAT-----SRGYEDITLFLIQKGVDINIKDKFG  182 (329)
Q Consensus       109 ~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~~~~g  182 (329)
                      .+..+..+.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+     ..++.+++++|++.|...+..+..|
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g  183 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAG  183 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTC
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCC
Confidence            45567788999999999999999999999998 99999999999999999     6689999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCchHHHHHHHhCcH
Q 020239          183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLS-NGVDPNSRDYDHRTPLHVAASEGLY  259 (329)
Q Consensus       183 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~  259 (329)
                      .||||+|+..|+.+++++|++.|++++..+  +.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.
T Consensus       184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~  263 (276)
T 4hbd_A          184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQS  263 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCH
Confidence            999999999999999999999999998765  6799999999999999999999 8999999999999999999999999


Q ss_pred             HHHHHHHHCC
Q 020239          260 LMAKLLLEAG  269 (329)
Q Consensus       260 ~iv~~Ll~~g  269 (329)
                      +++++|++++
T Consensus       264 ~iv~~Ll~~~  273 (276)
T 4hbd_A          264 EIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcc
Confidence            9999999864

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=9e-30  Score=216.64  Aligned_cols=180  Identities=22%  Similarity=0.259  Sum_probs=155.3

Q ss_pred             CCCCChHHHHHHHcCcHHHHH----HHHhcCCCccccC----CCCCcHHHHHH---HcCCHHHHHHHHHcCCC-------
Q 020239          146 DYDGRSPLHLATSRGYEDITL----FLIQKGVDINIKD----KFGNTPLLEAI---KCGHDGVTSLLVKEGAS-------  207 (329)
Q Consensus       146 ~~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~----~~g~t~l~~A~---~~~~~~~v~~Ll~~~~~-------  207 (329)
                      +..+.|+||.|+..|+.+.++    +|.+.|.+++..+    ..|.||||+|+   +.|+.+++++|++.|++       
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            457889999999999999544    5555899988665    67999999999   67999999999998743       


Q ss_pred             ----CCcC--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC--------------CCCchHHHHHHHhCcHHHHHHHHH
Q 020239          208 ----LNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD--------------YDHRTPLHVAASEGLYLMAKLLLE  267 (329)
Q Consensus       208 ----~~~~--~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------~~g~t~L~~A~~~~~~~iv~~Ll~  267 (329)
                          .+..  .+.||||+|+..|+.+++++|+++|++++..+              ..|.||||+|+..|+.+++++|++
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  161 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE  161 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                2222  57799999999999999999999999999998              689999999999999999999999


Q ss_pred             ---CCCCccCCCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCc---------cc------cccccchhHHHH
Q 020239          268 ---AGASVFTKDRWGNTPLDEGRMCGN---------KNLIKLLEDAKCTQL---------SE------FHYCSQGMIGIA  320 (329)
Q Consensus       268 ---~g~~~~~~~~~g~t~l~~A~~~~~---------~~iv~~L~~~~~~~~---------~~------~~~~~~~~~~~~  320 (329)
                         +|++++.+|..|+||||+|+..++         .+++++|+++|+...         ..      ..++..|+.+++
T Consensus       162 ~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v  241 (260)
T 3jxi_A          162 NGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIF  241 (260)
T ss_dssp             CSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHH
Confidence               999999999999999999999888         799999999977541         11      224567899999


Q ss_pred             Hhhhc
Q 020239          321 ENLLL  325 (329)
Q Consensus       321 ~~l~~  325 (329)
                      ++|+.
T Consensus       242 ~~Ll~  246 (260)
T 3jxi_A          242 QHIIR  246 (260)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99974

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.5e-29  Score=212.75  Aligned_cols=158  Identities=23%  Similarity=0.245  Sum_probs=117.7

Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcC
Q 020239          147 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARG  224 (329)
Q Consensus       147 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g  224 (329)
                      ..|.||||.|+..++.++++.|+++|++++.. ..|.||||.|+..|+.+++++|++.|++++..+  +.||||+|+..|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            46899999999999999999999999999865 678999999999999999999999999888765  679999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCC-cHHHHH--HHcCCHHHHHHHHHc
Q 020239          225 DSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN-TPLDEG--RMCGNKNLIKLLEDA  301 (329)
Q Consensus       225 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~-t~l~~A--~~~~~~~iv~~L~~~  301 (329)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|. ||+|+|  +..|+.+++++|+++
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998887 999999  888999999999998


Q ss_pred             CCCC
Q 020239          302 KCTQ  305 (329)
Q Consensus       302 ~~~~  305 (329)
                      |+..
T Consensus       162 ~a~~  165 (239)
T 1ycs_B          162 QEKM  165 (239)
T ss_dssp             HHHT
T ss_pred             hhcc
Confidence            7754

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=5.4e-29  Score=200.81  Aligned_cols=160  Identities=23%  Similarity=0.331  Sum_probs=136.8

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCcH----HHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239          116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYE----DITLFLIQKGVDINIKDKFGNTPLLEAI  190 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  190 (329)
                      ..++|+.|++.|+.+.++.+++.+.  +..+ ..|.||||+|+..|+.    +++++|+++|++++.+|..|.||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            4467999999999999999998764  3455 6799999999999975    5899999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCc-hHHHHHHHh-----CcHHHHHH
Q 020239          191 KCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHR-TPLHVAASE-----GLYLMAKL  264 (329)
Q Consensus       191 ~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~-----~~~~iv~~  264 (329)
                      ..++.++.+                         ..+++++|+++|++++.+|..|. ||||+|+..     +..+++++
T Consensus        84 ~~~~~~~~~-------------------------~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~  138 (186)
T 3t8k_A           84 QGGGNDITG-------------------------TTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKL  138 (186)
T ss_dssp             HHCTTCHHH-------------------------HHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHH
T ss_pred             HcCCcchhh-------------------------HHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHH
Confidence            887654322                         24678888888899999999999 999999983     45679999


Q ss_pred             HHH-CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020239          265 LLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK  302 (329)
Q Consensus       265 Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~  302 (329)
                      |++ +|++++.+|..|+||||+|+..|+.++|++|.+..
T Consensus       139 Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~  177 (186)
T 3t8k_A          139 IFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI  177 (186)
T ss_dssp             HHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence            999 99999999999999999999999999999998653

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=3.2e-28  Score=186.46  Aligned_cols=134  Identities=28%  Similarity=0.437  Sum_probs=101.4

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHH
Q 020239          139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC  218 (329)
Q Consensus       139 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~  218 (329)
                      +++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++              
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~--------------   66 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLH--------------   66 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH--------------
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC--------------
Confidence            35667777777777777777777777777777777777777777777666666 655555555554              


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCC-CchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHH
Q 020239          219 IAVARGDSDLLKRVLSNGVDPNSRDYD-HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL  297 (329)
Q Consensus       219 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~  297 (329)
                                       |++++.+|.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++
T Consensus        67 -----------------g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~  129 (136)
T 1d9s_A           67 -----------------GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY  129 (136)
T ss_dssp             -----------------TCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHH
T ss_pred             -----------------CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHH
Confidence                             5556666777 7888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCC
Q 020239          298 LEDAKCT  304 (329)
Q Consensus       298 L~~~~~~  304 (329)
                      |+++|++
T Consensus       130 Ll~~Gad  136 (136)
T 1d9s_A          130 LHAATGD  136 (136)
T ss_dssp             HHHHHCC
T ss_pred             HHHcCCC
Confidence            8887763

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=4.3e-28  Score=185.73  Aligned_cols=113  Identities=27%  Similarity=0.258  Sum_probs=96.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCC-CCcHHHHHHHcC
Q 020239          212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRW-GNTPLDEGRMCG  290 (329)
Q Consensus       212 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~  290 (329)
                      .+.||||+|+..|+.+++++|++.|++++.++..|+||||+|+. |+.+++++|+++|++++.+|.. |+||||+|+..|
T Consensus        11 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~   89 (136)
T 1d9s_A           11 SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREG   89 (136)
T ss_dssp             CCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcC
Confidence            34577777777777888888888888889999999999999999 9999999999999999999999 999999999999


Q ss_pred             CHHHHHHHHHcCCCCcccc--------ccccchhHHHHHhhhc
Q 020239          291 NKNLIKLLEDAKCTQLSEF--------HYCSQGMIGIAENLLL  325 (329)
Q Consensus       291 ~~~iv~~L~~~~~~~~~~~--------~~~~~~~~~~~~~l~~  325 (329)
                      +.+++++|+++|+......        .++..++.+++++|+.
T Consensus        90 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~  132 (136)
T 1d9s_A           90 FLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA  132 (136)
T ss_dssp             CHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999988643332        2345578899998874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=2.1e-28  Score=191.96  Aligned_cols=142  Identities=22%  Similarity=0.211  Sum_probs=91.4

Q ss_pred             CCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCc-HHHHH
Q 020239          144 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGS-FLCIA  220 (329)
Q Consensus       144 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~-~l~~A  220 (329)
                      ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ .|+.+++++|+++|++++..+  +.| |||+|
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA   85 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            34455666777777777777777776666666666666666666664 666666666666666666544  344 77777


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHH
Q 020239          221 VARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEG  286 (329)
Q Consensus       221 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A  286 (329)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||.+-+
T Consensus        86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            777777777777878888888889999999999999999999999999999999999998887743

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.2e-29  Score=211.68  Aligned_cols=191  Identities=16%  Similarity=0.077  Sum_probs=156.8

Q ss_pred             HHHHHHcCCCCCCC---CCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239          132 LKGLIRAGADLNKT---DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASL  208 (329)
Q Consensus       132 v~~Ll~~~~~~~~~---~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~  208 (329)
                      ++.|+++|++++..   +.++.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            46788888887654   455678899999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCchHHHHH--HHhCcHHHHHHHHHCCCCccCCCCCCCcHH
Q 020239          209 NVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRD-YDHRTPLHVA--ASEGLYLMAKLLLEAGASVFTKDRWGNTPL  283 (329)
Q Consensus       209 ~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A--~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l  283 (329)
                      +..+  +.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|  +..|+.+++++|+++|++++.+|..|.||+
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l  160 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL  160 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence            8765  6799999999999999999999999999987 6999999999  999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCC----------ccccccccchhHHHHHhhhc
Q 020239          284 DEGRMCGNKNLIKLLEDAKCTQ----------LSEFHYCSQGMIGIAENLLL  325 (329)
Q Consensus       284 ~~A~~~~~~~iv~~L~~~~~~~----------~~~~~~~~~~~~~~~~~l~~  325 (329)
                      +.++...   ..++|++.|+..          +....++..|+.++|+.++.
T Consensus       161 ~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l  209 (229)
T 2vge_A          161 WDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF  209 (229)
T ss_dssp             SCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGE
T ss_pred             HHHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcceeehhhh
Confidence            8654443   336777777642          11133566788888876554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=1.5e-29  Score=225.45  Aligned_cols=204  Identities=15%  Similarity=0.011  Sum_probs=142.9

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCc---cccCCCCCcHHHH
Q 020239          115 ELALRFNSAAYHGDLYQLKGLIRAGADL---NKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI---NIKDKFGNTPLLE  188 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~  188 (329)
                      ...||||.|+..|+.+++++|++.|+..   +..+..|.||||+|+..|+.++|++|+++|+++   +..+.. .||||+
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~  169 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL  169 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence            3459999999999999999999988732   233456788999999999999999999999752   222222 899999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCc--C--CCCcHHHHHH-HcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHH
Q 020239          189 AIKCGHDGVTSLLVKEGASLNV--D--DAGSFLCIAV-ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAK  263 (329)
Q Consensus       189 A~~~~~~~~v~~Ll~~~~~~~~--~--~~~~~l~~A~-~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~  263 (329)
                      |+..|+.+++++|+++|++++.  .  .+.||||+|+ ..|+.+++++|++.|+       .|.||||+|+..|+.++++
T Consensus       170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~  242 (376)
T 2aja_A          170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNP  242 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHH
T ss_pred             HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHH
Confidence            9999999999999999988654  3  3569999999 9999999999998764       3889999999999999999


Q ss_pred             HHHHCCCCcc-------------------------------------------------------------CCCCCCCcH
Q 020239          264 LLLEAGASVF-------------------------------------------------------------TKDRWGNTP  282 (329)
Q Consensus       264 ~Ll~~g~~~~-------------------------------------------------------------~~~~~g~t~  282 (329)
                      +|+++|++++                                                             ...+.+.||
T Consensus       243 lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~  322 (376)
T 2aja_A          243 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL  322 (376)
T ss_dssp             HHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHH
T ss_pred             HHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHH
Confidence            9988765331                                                             112345678


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCC-----CccccccccchhHHHHHhhhcC
Q 020239          283 LDEGRMCGNKNLIKLLEDAKCT-----QLSEFHYCSQGMIGIAENLLLL  326 (329)
Q Consensus       283 l~~A~~~~~~~iv~~L~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~  326 (329)
                      |++|+..|+.+++++|++.+..     ...-+.+..+|++++++.-+.+
T Consensus       323 L~~A~~~g~~e~v~lLl~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (376)
T 2aja_A          323 LRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDLRAVALEH  371 (376)
T ss_dssp             HHHHHHHTCTTHHHHHTTSHHHHHSCC----------------------
T ss_pred             HHHHHHcCcHHHHHHHHcChHHHHHHHHhccccccccccccHHHHHHHH
Confidence            8999999999999998887542     1222344556788877765544

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=4.4e-27  Score=184.41  Aligned_cols=141  Identities=21%  Similarity=0.271  Sum_probs=116.6

Q ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCc-HHHHHH
Q 020239          112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT-PLLEAI  190 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~  190 (329)
                      .+..+.++||.|+..|+.+++++|++.|++++..+..|.||||+|+ .|+.+++++|+++|++++.++..|.| |||+|+
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~   86 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA   86 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            4455679999999999999999999999999999999999999985 99999999999999999999999999 999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHH
Q 020239          191 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVA  253 (329)
Q Consensus       191 ~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  253 (329)
                      ..|+.+++++|+++|++++..+  +.||||+|+..|+.+++++|+++|++++.++..|.||.+.+
T Consensus        87 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            9999999999999999998765  67999999999999999999999999999999999987743

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.1e-25  Score=169.49  Aligned_cols=125  Identities=45%  Similarity=0.661  Sum_probs=92.1

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHH
Q 020239          149 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDL  228 (329)
Q Consensus       149 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~  228 (329)
                      |.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..++.+                               +
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~-------------------------------~   50 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE-------------------------------V   50 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHH-------------------------------H
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHH-------------------------------H
Confidence            666777777777777777777776666666666666666665555554                               4


Q ss_pred             HHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239          229 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  304 (329)
Q Consensus       229 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~  304 (329)
                      +++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..|+.+++++|+++|+.
T Consensus        51 ~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           51 VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            5555555566667777788888888888888888888888888888888888888888888888888888888763

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=5.5e-26  Score=173.94  Aligned_cols=125  Identities=36%  Similarity=0.502  Sum_probs=96.0

Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCH
Q 020239          147 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS  226 (329)
Q Consensus       147 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~  226 (329)
                      ..+.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.                               
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~-------------------------------   60 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHL-------------------------------   60 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH-------------------------------
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH-------------------------------
Confidence            4456677777777777777777777777766666666666666655554                               


Q ss_pred             HHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020239          227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK  302 (329)
Q Consensus       227 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~  302 (329)
                      +++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        61 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           61 EIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            5555555556667777888999999999999999999999999999989999999999999999999999998875

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=1e-25  Score=179.03  Aligned_cols=149  Identities=31%  Similarity=0.360  Sum_probs=115.1

Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCH
Q 020239          147 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS  226 (329)
Q Consensus       147 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~  226 (329)
                      ..+.++|+.|+..|+.+++++|+++|++++.++..|.||||+|+.                               .|+.
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-------------------------------~~~~   60 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF-------------------------------NGHL   60 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH-------------------------------TTCH
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH-------------------------------cCCH
Confidence            344566666666666666666666666666666666666555555                               4555


Q ss_pred             HHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q 020239          227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL  306 (329)
Q Consensus       227 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~  306 (329)
                      +++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+...
T Consensus        61 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  140 (169)
T 2y1l_E           61 EIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN  140 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            55555566666777888899999999999999999999999999999999999999999999999999999999988643


Q ss_pred             cc--------cccccchhHHHHHhhhcC
Q 020239          307 SE--------FHYCSQGMIGIAENLLLL  326 (329)
Q Consensus       307 ~~--------~~~~~~~~~~~~~~l~~~  326 (329)
                      ..        ..+...++.+++++|+..
T Consensus       141 ~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          141 AQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             CcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            32        223566899999999863

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.1e-25  Score=169.49  Aligned_cols=125  Identities=46%  Similarity=0.648  Sum_probs=107.8

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239          116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  195 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  195 (329)
                      +.|+||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~   81 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChH
Confidence            56899999999999999999999999999999999999999999999999999999999999988888888888776666


Q ss_pred             HHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCC
Q 020239          196 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  271 (329)
Q Consensus       196 ~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~  271 (329)
                      +++++|+++                               |++++.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus        82 ~~~~~Ll~~-------------------------------g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           82 EVVKLLLEA-------------------------------GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHT-------------------------------TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHc-------------------------------CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            666666554                               455566677788888888888888888888888775

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=1.4e-25  Score=171.59  Aligned_cols=128  Identities=32%  Similarity=0.447  Sum_probs=107.0

Q ss_pred             ccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239          111 KHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  190 (329)
Q Consensus       111 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  190 (329)
                      .....+.++||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus         9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A            9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             cccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            34556789999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCC
Q 020239          191 KCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG  269 (329)
Q Consensus       191 ~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g  269 (329)
                      ..|+.+++++|+++|                               ++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus        89 ~~~~~~~v~~Ll~~g-------------------------------~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           89 FIGHLEIAEVLLKHG-------------------------------ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHTCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHcC-------------------------------CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            877766666666554                               455566677777777777777777777777765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=9.4e-29  Score=220.24  Aligned_cols=173  Identities=13%  Similarity=0.053  Sum_probs=149.2

Q ss_pred             hHHHHHHHH-cCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCc---cccCCCCCcHHHHHHHc
Q 020239          117 ALRFNSAAY-HGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI---NIKDKFGNTPLLEAIKC  192 (329)
Q Consensus       117 ~~~l~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A~~~  192 (329)
                      .+++++|.. .++.+.++++++.|.+.       .||||+|+..|+.+++++|+++|+..   +..+..|.||||+|+..
T Consensus        66 ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~  138 (376)
T 2aja_A           66 LLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN  138 (376)
T ss_dssp             HHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc
Confidence            467788877 57899999999987653       49999999999999999999998732   23344578999999999


Q ss_pred             CCHHHHHHHHHcCCC-----CCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCchHHHHHH-HhCcHHHHHH
Q 020239          193 GHDGVTSLLVKEGAS-----LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS--RDYDHRTPLHVAA-SEGLYLMAKL  264 (329)
Q Consensus       193 ~~~~~v~~Ll~~~~~-----~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~-~~~~~~iv~~  264 (329)
                      |+.+++++|+++|++     ++..+ .||||+|+..|+.+++++|+++|++++.  .|..|.||||+|+ ..|+.+++++
T Consensus       139 G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~  217 (376)
T 2aja_A          139 GHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINF  217 (376)
T ss_dssp             TCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHH
T ss_pred             CCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHH
Confidence            999999999999974     44444 7999999999999999999999999887  8888999999999 9999999999


Q ss_pred             HHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239          265 LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  304 (329)
Q Consensus       265 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~  304 (329)
                      |+++|++       |.|||++|+..|+.+++++|+++|+.
T Consensus       218 Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~  250 (376)
T 2aja_A          218 LLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNR  250 (376)
T ss_dssp             HTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHH
T ss_pred             HHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCcc
Confidence            9998753       78999999999999999999998763

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=1.8e-27  Score=191.78  Aligned_cols=138  Identities=24%  Similarity=0.314  Sum_probs=91.1

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccC-CCCCcHHHHHHHcC
Q 020239          115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIKCG  193 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~  193 (329)
                      .+.||||.|+..|+.+++++|++ |.+++.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|.|         
T Consensus        43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~t---------  112 (183)
T 3deo_A           43 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLT---------  112 (183)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCC---------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCC---------
Confidence            45556666666666666666665 55555555556666666666666666666666655555554 44444         


Q ss_pred             CHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCcc
Q 020239          194 HDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  273 (329)
Q Consensus       194 ~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~  273 (329)
                                            |||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.              
T Consensus       113 ----------------------pL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--------------  156 (183)
T 3deo_A          113 ----------------------ALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT--------------  156 (183)
T ss_dssp             ----------------------HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT--------------
T ss_pred             ----------------------HHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC--------------
Confidence                                  45555555566666666666777778888899999999875432              


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020239          274 TKDRWGNTPLDEGRMCGNKNLIKLLEDA  301 (329)
Q Consensus       274 ~~~~~g~t~l~~A~~~~~~~iv~~L~~~  301 (329)
                         ..+.+|+++|+..|+.+++++|.++
T Consensus       157 ---~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 ---TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             ---CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ---cccccHHHHHHHcCHHHHHHHHHHh
Confidence               3457899999999999999998765

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.9e-26  Score=176.67  Aligned_cols=134  Identities=34%  Similarity=0.448  Sum_probs=97.0

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHH
Q 020239          139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC  218 (329)
Q Consensus       139 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~  218 (329)
                      |+|+ .+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+                        
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~------------------------   55 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGH------------------------   55 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC------------------------
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC------------------------
Confidence            4455 556667777777777777777777777777777666666666666655554                        


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHH
Q 020239          219 IAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  298 (329)
Q Consensus       219 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L  298 (329)
                             .+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..+..+++++|
T Consensus        56 -------~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l  128 (137)
T 3c5r_A           56 -------LKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP  128 (137)
T ss_dssp             -------HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred             -------HHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence                   4555555555666777788889999999999999999999999999999999999999999988888888888


Q ss_pred             HHcCCC
Q 020239          299 EDAKCT  304 (329)
Q Consensus       299 ~~~~~~  304 (329)
                      .+.+.+
T Consensus       129 ~~~~~s  134 (137)
T 3c5r_A          129 EKNESS  134 (137)
T ss_dssp             ------
T ss_pred             cccccC
Confidence            777654

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=5e-25  Score=172.01  Aligned_cols=140  Identities=30%  Similarity=0.340  Sum_probs=105.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHH
Q 020239          184 TPLLEAIKCGHDGVTSLLVKEGASLNV-DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMA  262 (329)
Q Consensus       184 t~l~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv  262 (329)
                      ++|+.|++.|+.+++++|++.|.+++. ..+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   83 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIV   83 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHH
Confidence            444455555555555555544444332 1234556666666666666777777778888899999999999999999999


Q ss_pred             HHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc--------ccccchhHHHHHhh
Q 020239          263 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF--------HYCSQGMIGIAENL  323 (329)
Q Consensus       263 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~--------~~~~~~~~~~~~~l  323 (329)
                      ++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+......        .++..++.+++++|
T Consensus        84 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           84 EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999999999999999999988654332        23455778888776

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=3.3e-25  Score=175.23  Aligned_cols=149  Identities=25%  Similarity=0.286  Sum_probs=112.4

Q ss_pred             CCCCChHHHHHHHcCcHHHHHHHHhc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcC
Q 020239          146 DYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARG  224 (329)
Q Consensus       146 ~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g  224 (329)
                      +..|.||||.|+..|+.+++++|++. +.+++..+..|.                               ||||+|+..|
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~-------------------------------t~L~~A~~~~   53 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-------------------------------TPLHFAAGYN   53 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCC-------------------------------CHHHHHHHTT
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCC-------------------------------CHHHHHHHcC
Confidence            34455555555555555555555553 333444444444                               5555555566


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239          225 DSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  304 (329)
Q Consensus       225 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~  304 (329)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+.
T Consensus        54 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  133 (165)
T 3twr_A           54 RVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD  133 (165)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            66666666777777888899999999999999999999999999999999999999999999999999999999999875


Q ss_pred             Ccc-------ccccccchhHHHHHhhhc
Q 020239          305 QLS-------EFHYCSQGMIGIAENLLL  325 (329)
Q Consensus       305 ~~~-------~~~~~~~~~~~~~~~l~~  325 (329)
                      ...       +...+..++.+++++|+.
T Consensus       134 ~~~~~~~g~t~l~~a~~~~~~i~~~L~~  161 (165)
T 3twr_A          134 PTKKNRDGNTPLDLVKDGDTDIQDLLRG  161 (165)
T ss_dssp             TTCCCTTSCCTGGGSCTTCHHHHHHHHT
T ss_pred             CcccCCCCCChhHhHhcCChHHHHHHhh
Confidence            432       234456688999999975

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=1.4e-25  Score=171.88  Aligned_cols=128  Identities=23%  Similarity=0.316  Sum_probs=105.8

Q ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q 020239          112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  191 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  191 (329)
                      .+..+.|+||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~   85 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK   85 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence            55678899999999999999999999999999999999999999999999999999999999999988888888887777


Q ss_pred             cCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCC
Q 020239          192 CGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA  270 (329)
Q Consensus       192 ~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~  270 (329)
                      .|+.+++++|++                               .|++++.+|..|.||||+|+..+..+++++|.+.+.
T Consensus        86 ~~~~~~v~~Ll~-------------------------------~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           86 NGHVDIVKLLLS-------------------------------YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             TTCHHHHHHHHH-------------------------------TTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             cCCHHHHHHHHH-------------------------------cCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            666555555554                               555666777788888888888888888877766543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=6.4e-25  Score=184.97  Aligned_cols=139  Identities=24%  Similarity=0.298  Sum_probs=104.0

Q ss_pred             hhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccC-CCCCcHHHHHHHc
Q 020239          114 AELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIKC  192 (329)
Q Consensus       114 ~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~  192 (329)
                      ..+.||||.|+..|+.+++++|++ |++++.+|..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            467788888888888888888888 88888888888888888888888888888888888887776 5566766666665


Q ss_pred             CCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCc
Q 020239          193 GHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASV  272 (329)
Q Consensus       193 ~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~  272 (329)
                      |+.++++                               +|+++|++++.+|..|.||||+|+..++              
T Consensus       122 g~~~~v~-------------------------------~Ll~~ga~~~~~d~~g~t~l~~A~~~~~--------------  156 (244)
T 3ui2_A          122 VRPEVVE-------------------------------ALVELGADIEVEDERGLTALELAREILK--------------  156 (244)
T ss_dssp             TCHHHHH-------------------------------HHHHTTCCTTCCCTTCCCHHHHHHHHHT--------------
T ss_pred             CCHHHHH-------------------------------HHHHCCCCCCCCCCCCCcHHHHHHHHHh--------------
Confidence            5555555                               4555556666677778888888875321              


Q ss_pred             cCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020239          273 FTKDRWGNTPLDEGRMCGNKNLIKLLEDA  301 (329)
Q Consensus       273 ~~~~~~g~t~l~~A~~~~~~~iv~~L~~~  301 (329)
                         ...+.|||++|+..|+.+++++|.++
T Consensus       157 ---~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          157 ---TTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             ---TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence               24567788888888888888888775

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=1e-24  Score=189.11  Aligned_cols=138  Identities=18%  Similarity=0.089  Sum_probs=100.7

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCccc------cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCcCC--CCcHH
Q 020239          149 GRSPLHLATSRGYEDITLFLIQKGVDINI------KDKFGNTPLLEAIKC---GHDGVTSLLVKEGASLNVDD--AGSFL  217 (329)
Q Consensus       149 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------~~~~g~t~l~~A~~~---~~~~~v~~Ll~~~~~~~~~~--~~~~l  217 (329)
                      +.++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   |+.+++++|+++|++++..+  +.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            34567777777777777777777777665      466677777777765   66677777777776666543  45777


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCH
Q 020239          218 CIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNK  292 (329)
Q Consensus       218 ~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  292 (329)
                      |+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++      .|.||||+|+..|+.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            777777888888888888888999999999999999999999999999998876      478999999998874

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=4.9e-24  Score=166.82  Aligned_cols=140  Identities=21%  Similarity=0.222  Sum_probs=102.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHc-CCCCCcC--CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHH
Q 020239          184 TPLLEAIKCGHDGVTSLLVKE-GASLNVD--DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYL  260 (329)
Q Consensus       184 t~l~~A~~~~~~~~v~~Ll~~-~~~~~~~--~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  260 (329)
                      |||+.|+..|+.+++++|++. +.+++..  .+.||||+ +..|+.+++++|++.|++++.+|..|.||||+|+..|+.+
T Consensus         4 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   82 (156)
T 1bd8_A            4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             hHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            344444444444444444443 1122221  23455555 5566666777777777788888999999999999999999


Q ss_pred             HHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--------cccccchhHHHHHhhhc
Q 020239          261 MAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE--------FHYCSQGMIGIAENLLL  325 (329)
Q Consensus       261 iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~--------~~~~~~~~~~~~~~l~~  325 (329)
                      ++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ +.....        ..++..++.+++++|+.
T Consensus        83 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A           83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            99999999999999999999999999999999999999988 433222        22356688999998874

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=5.2e-24  Score=171.40  Aligned_cols=88  Identities=25%  Similarity=0.235  Sum_probs=81.1

Q ss_pred             ccccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCc
Q 020239          106 TFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT  184 (329)
Q Consensus       106 ~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t  184 (329)
                      ....+..+..+.||||+|+..|+.+++++|++.|++++.++ ..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus        66 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t  145 (183)
T 3deo_A           66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLT  145 (183)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred             cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCC
Confidence            33455667789999999999999999999999999999988 88999999999999999999999999999999999999


Q ss_pred             HHHHHHHcC
Q 020239          185 PLLEAIKCG  193 (329)
Q Consensus       185 ~l~~A~~~~  193 (329)
                      |||+|+..+
T Consensus       146 pl~~A~~~~  154 (183)
T 3deo_A          146 ALELAREIL  154 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999998743

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.91  E-value=2.6e-24  Score=181.21  Aligned_cols=116  Identities=22%  Similarity=0.210  Sum_probs=99.0

Q ss_pred             cccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcH
Q 020239          107 FHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP  185 (329)
Q Consensus       107 ~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  185 (329)
                      ...+..+..+.||||+|+..|+.+++++|++.|++++.++ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        68 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~  147 (244)
T 3ui2_A           68 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA  147 (244)
T ss_dssp             CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            4455677789999999999999999999999999999998 789999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHH
Q 020239          186 LLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  265 (329)
Q Consensus       186 l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~L  265 (329)
                      ||+|+..++                                                ...+.|||++|+..|+.+++++|
T Consensus       148 l~~A~~~~~------------------------------------------------~~~~~~~l~~a~~~g~~~iv~~L  179 (244)
T 3ui2_A          148 LELAREILK------------------------------------------------TTPKGNPMQFGRRIGLEKVINVL  179 (244)
T ss_dssp             HHHHHHHHT------------------------------------------------TCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh------------------------------------------------ccCCCCHHHHHHHcChHHHHHHH
Confidence            999986322                                                13356777777777777777777


Q ss_pred             HHCCC
Q 020239          266 LEAGA  270 (329)
Q Consensus       266 l~~g~  270 (329)
                      ++++.
T Consensus       180 ~~~~~  184 (244)
T 3ui2_A          180 EGQVF  184 (244)
T ss_dssp             HHHHE
T ss_pred             HHhcc
Confidence            76543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=4.6e-24  Score=160.20  Aligned_cols=111  Identities=31%  Similarity=0.285  Sum_probs=82.8

Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCH
Q 020239          147 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS  226 (329)
Q Consensus       147 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~  226 (329)
                      ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.                               .|+.
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~-------------------------------~~~~   53 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAAD-------------------------------CGQL   53 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHH-------------------------------TTCH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHH-------------------------------cCCH
Confidence            345566666666666666666666666666666666666555555                               5555


Q ss_pred             HHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHH
Q 020239          227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRM  288 (329)
Q Consensus       227 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~  288 (329)
                      +++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||+++|..
T Consensus        54 ~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           54 EILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            55555666667777888889999999999999999999999999999999999999999843

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=2.8e-24  Score=178.35  Aligned_cols=133  Identities=20%  Similarity=0.275  Sum_probs=65.9

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhc-CCCccccCCCCCcHHHHHHHcC
Q 020239          115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCG  193 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~  193 (329)
                      .+.|+||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++ |++++.+|..|.||||+|+..|
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~  151 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG  151 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcC
Confidence            344555555555555555555555555555555555555555555555555555555 5555555555555555444444


Q ss_pred             CHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCcc
Q 020239          194 HDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  273 (329)
Q Consensus       194 ~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~  273 (329)
                      +.++++                               +|+++|++++.+|..|.||||+|+..++.++++.|++.|+..+
T Consensus       152 ~~~~v~-------------------------------~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~  200 (222)
T 3ehr_A          152 YADIVQ-------------------------------LLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT  200 (222)
T ss_dssp             CHHHHH-------------------------------HHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred             CHHHHH-------------------------------HHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence            433333                               3333444555556666666666666666666666666666655


Q ss_pred             CCCCC
Q 020239          274 TKDRW  278 (329)
Q Consensus       274 ~~~~~  278 (329)
                      .++..
T Consensus       201 ~~~~~  205 (222)
T 3ehr_A          201 LSNAE  205 (222)
T ss_dssp             -----
T ss_pred             ccchh
Confidence            54443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=3.3e-22  Score=171.47  Aligned_cols=127  Identities=21%  Similarity=0.183  Sum_probs=118.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCc--------CCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCchHH
Q 020239          182 GNTPLLEAIKCGHDGVTSLLVKEGASLNV--------DDAGSFLCIAVAR---GDSDLLKRVLSNGVDPNSRDYDHRTPL  250 (329)
Q Consensus       182 g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~--------~~~~~~l~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L  250 (329)
                      ..++|+.|+..|+.+.+..+++.|.+++.        ..+.||||+|+..   |+.+++++|+++|++++.+|..|+|||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence            35789999999999999999999988653        3478999999999   899999999999999999999999999


Q ss_pred             HHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 020239          251 HVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE  308 (329)
Q Consensus       251 ~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~  308 (329)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+.....
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~  267 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNS  267 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999976554

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=3e-24  Score=172.96  Aligned_cols=137  Identities=16%  Similarity=0.071  Sum_probs=117.7

Q ss_pred             hhhhHHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCChHHHHHHHcCc------HHHHHHHHhcCCCccccCCCCC
Q 020239          114 AELALRFNSAAYHGDL----YQLKGLIRAGADLNKTDYDGRSPLHLATSRGY------EDITLFLIQKGVDINIKDKFGN  183 (329)
Q Consensus       114 ~~~~~~l~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~------~~~v~~Ll~~g~~~~~~~~~g~  183 (329)
                      ..+.||||+|+..|+.    +++++|++.|+++|.+|..|.||||+|+..++      .+++++|+++|++++.+|..|.
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~  115 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK  115 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence            5678999999999985    59999999999999999999999999999987      6889999999999999999999


Q ss_pred             -cHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCchHHHHHHHhCcHHH
Q 020239          184 -TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLS-NGVDPNSRDYDHRTPLHVAASEGLYLM  261 (329)
Q Consensus       184 -t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~i  261 (329)
                       ||||+|+..+..+                          .++.+++++|++ .|++++.+|..|.||||+|+..|+.++
T Consensus       116 ttpLh~A~~~~~~~--------------------------~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~  169 (186)
T 3t8k_A          116 IVVFKNIFNYFVDE--------------------------NEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIA  169 (186)
T ss_dssp             BCTTGGGGGCCSCH--------------------------HHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHH
T ss_pred             chHHHHHHHcCCCh--------------------------hhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence             9999888744311                          123467788888 899999999999999999999999999


Q ss_pred             HHHHHHCCCCccCCC
Q 020239          262 AKLLLEAGASVFTKD  276 (329)
Q Consensus       262 v~~Ll~~g~~~~~~~  276 (329)
                      +++|.+...+.+.++
T Consensus       170 v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          170 LKMMEDYIKKYNLKE  184 (186)
T ss_dssp             HHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999998765555544

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=6.7e-24  Score=176.08  Aligned_cols=132  Identities=24%  Similarity=0.264  Sum_probs=103.5

Q ss_pred             CCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcC
Q 020239          145 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARG  224 (329)
Q Consensus       145 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g  224 (329)
                      .+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|                       
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L-----------------------  125 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML-----------------------  125 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH-----------------------
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHH-----------------------
Confidence            356678888888888888888888888888888877777777777766655555555                       


Q ss_pred             CHHHHHHHHHC-CCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239          225 DSDLLKRVLSN-GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  303 (329)
Q Consensus       225 ~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~  303 (329)
                              ++. |++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.++++.|++.++
T Consensus       126 --------l~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~  197 (222)
T 3ehr_A          126 --------FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDA  197 (222)
T ss_dssp             --------TTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred             --------HcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence                    444 67788889999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCcc
Q 020239          304 TQLS  307 (329)
Q Consensus       304 ~~~~  307 (329)
                      ....
T Consensus       198 ~~~~  201 (222)
T 3ehr_A          198 VRTL  201 (222)
T ss_dssp             ----
T ss_pred             hhhc
Confidence            6543

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=2.5e-23  Score=156.16  Aligned_cols=113  Identities=35%  Similarity=0.486  Sum_probs=95.2

Q ss_pred             chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHc
Q 020239          113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  192 (329)
Q Consensus       113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  192 (329)
                      +..+.++||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            44567999999999999999999999999999999999999999999999999999999999999999999998888887


Q ss_pred             CCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHh
Q 020239          193 GHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASE  256 (329)
Q Consensus       193 ~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  256 (329)
                      |+.+++++|+++|                               ++++.+|..|.||||+|...
T Consensus        84 ~~~~~v~~Ll~~g-------------------------------a~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           84 GHVSCVKLLLSKG-------------------------------ADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             TCHHHHHHHHHTT-------------------------------CCTTCCCTTSCCHHHHCCCH
T ss_pred             CCHHHHHHHHHcC-------------------------------CCCCCcCCCCCCHHHHhCCH
Confidence            7766666666554                               45556667777777777433

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.4e-22  Score=144.30  Aligned_cols=93  Identities=40%  Similarity=0.565  Sum_probs=86.8

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCC
Q 020239          212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN  291 (329)
Q Consensus       212 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  291 (329)
                      ++.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q 020239          292 KNLIKLLEDAKCT  304 (329)
Q Consensus       292 ~~iv~~L~~~~~~  304 (329)
                      .+++++|+++|+.
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999873

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=1.5e-21  Score=167.31  Aligned_cols=128  Identities=22%  Similarity=0.211  Sum_probs=90.0

Q ss_pred             hhhhHHHHHHHHcCCHHHHHHHHHcCCCCC------CCCCCCChHHHHHHHc---CcHHHHHHHHhcCCCccccCCCCCc
Q 020239          114 AELALRFNSAAYHGDLYQLKGLIRAGADLN------KTDYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNT  184 (329)
Q Consensus       114 ~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~------~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t  184 (329)
                      ....++|+.|+..|+.+.++.+++.|.+++      ..+..|.||||+|+..   |+.+++++|+++|++++.+|..|.|
T Consensus       128 ~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~T  207 (278)
T 1dcq_A          128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGST  207 (278)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCC
T ss_pred             chhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCC
Confidence            344566777777777777777777776633      3356666777777766   6666777777766666666666666


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHH
Q 020239          185 PLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKL  264 (329)
Q Consensus       185 ~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~  264 (329)
                      |||+|+..                               |+.+++++|++.|++++.+|..|.||||+|+..|+.+++++
T Consensus       208 pLh~A~~~-------------------------------g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~  256 (278)
T 1dcq_A          208 ALHYCCLT-------------------------------DNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEEL  256 (278)
T ss_dssp             HHHHHHHT-------------------------------TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHc-------------------------------CCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHH
Confidence            66655554                               55555555566666777888889999999999999999999


Q ss_pred             HHHCCCCc
Q 020239          265 LLEAGASV  272 (329)
Q Consensus       265 Ll~~g~~~  272 (329)
                      |+++|++.
T Consensus       257 Ll~~ga~~  264 (278)
T 1dcq_A          257 LTQALSGR  264 (278)
T ss_dssp             HHHHHTTC
T ss_pred             HHHcCCCC
Confidence            99988754

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=5.9e-22  Score=175.80  Aligned_cols=144  Identities=24%  Similarity=0.209  Sum_probs=87.6

Q ss_pred             CCCChHHHHHHHc-CcHHHHHHHHhcCCCccccC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHH
Q 020239          147 YDGRSPLHLATSR-GYEDITLFLIQKGVDINIKD--KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAV  221 (329)
Q Consensus       147 ~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~  221 (329)
                      ..+.|+||.|+.. |+.+++++|+++|++++..+  ..|.||||+|+..|+.+++++|+++|++++..+  +.||||+|+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~  276 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT  276 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3455677777776 77777777777777777666  566777777777666666666666666665443  346666666


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCC---CCccCCCCCCCcHHHHHHHcC
Q 020239          222 ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG---ASVFTKDRWGNTPLDEGRMCG  290 (329)
Q Consensus       222 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g---~~~~~~~~~g~t~l~~A~~~~  290 (329)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.+   .+....+..+.|+++++....
T Consensus       277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            667777777777777777888888888888888888888888888755   333344556677777666543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=8.7e-22  Score=174.70  Aligned_cols=145  Identities=23%  Similarity=0.204  Sum_probs=118.0

Q ss_pred             CCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCcCC----CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHH
Q 020239          180 KFGNTPLLEAIKC-GHDGVTSLLVKEGASLNVDD----AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA  254 (329)
Q Consensus       180 ~~g~t~l~~A~~~-~~~~~v~~Ll~~~~~~~~~~----~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  254 (329)
                      ..+.|+||.|+.. |+.+++++|++.|++++..+    +.||||+|+..|+.+++++|+++|++++..|..|+||||+|+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~  276 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT  276 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3456899999999 99999999999999998765    569999999999999999999999999999999999999999


Q ss_pred             HhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--cccccchhHHHHHhhh
Q 020239          255 SEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE--FHYCSQGMIGIAENLL  324 (329)
Q Consensus       255 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~--~~~~~~~~~~~~~~l~  324 (329)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.+......  ........+++++.+.
T Consensus       277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~  348 (368)
T 3jue_A          277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS  348 (368)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987543322  2233345556555443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=4.2e-21  Score=166.42  Aligned_cols=123  Identities=27%  Similarity=0.189  Sum_probs=116.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCc--------CCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCchHH
Q 020239          182 GNTPLLEAIKCGHDGVTSLLVKEGASLNV--------DDAGSFLCIAVAR---GDSDLLKRVLSNGVDPNSRDYDHRTPL  250 (329)
Q Consensus       182 g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~--------~~~~~~l~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~L  250 (329)
                      ..++|+.|+..|+.+.++.|++.|++++.        ..+.||||+|+..   |+.+++++|+++|++++.+|..|.|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            45789999999999999999999999876        2456999999997   899999999999999999999999999


Q ss_pred             HHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239          251 HVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  304 (329)
Q Consensus       251 ~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~  304 (329)
                      |+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|+.
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999875

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=1.5e-21  Score=138.82  Aligned_cols=92  Identities=42%  Similarity=0.600  Sum_probs=83.9

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239          116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  195 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  195 (329)
                      +.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCC
Q 020239          196 GVTSLLVKEGAS  207 (329)
Q Consensus       196 ~~v~~Ll~~~~~  207 (329)
                      +++++|+++|++
T Consensus        82 ~~~~~Ll~~ga~   93 (93)
T 1n0q_A           82 EVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            999999988764

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=5.6e-21  Score=141.46  Aligned_cols=108  Identities=36%  Similarity=0.496  Sum_probs=70.6

Q ss_pred             CCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcC
Q 020239          145 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARG  224 (329)
Q Consensus       145 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g  224 (329)
                      +|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.                               .|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~-------------------------------~~   53 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAK-------------------------------NG   53 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHT-------------------------------TT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH-------------------------------cC
Confidence            45556666666666666666666666666665555555555555544                               44


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHH
Q 020239          225 DSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPL  283 (329)
Q Consensus       225 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l  283 (329)
                      +.+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++++.++..|.+|-
T Consensus        54 ~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           54 HAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             CHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             cHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            45555555555666677777788888888888888888888888888888887777763

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=1.7e-20  Score=138.83  Aligned_cols=101  Identities=37%  Similarity=0.542  Sum_probs=93.7

Q ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q 020239          112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  191 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  191 (329)
                      .+..+.|+||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            45567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCcCC
Q 020239          192 CGHDGVTSLLVKEGASLNVDD  212 (329)
Q Consensus       192 ~~~~~~v~~Ll~~~~~~~~~~  212 (329)
                      .|+.+++++|+++|++++..+
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~  105 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARS  105 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHS
T ss_pred             CCCHHHHHHHHHcCCCCCcCC
Confidence            999999999888888877654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=5.3e-19  Score=129.70  Aligned_cols=87  Identities=39%  Similarity=0.601  Sum_probs=81.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCC
Q 020239          212 DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGN  291 (329)
Q Consensus       212 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  291 (329)
                      ++.|+||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~  102 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN  102 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCC
Confidence            34578888888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 020239          292 KNLIKLL  298 (329)
Q Consensus       292 ~~iv~~L  298 (329)
                      .+++++|
T Consensus       103 ~~~~~~L  109 (110)
T 2zgd_A          103 EDLAEIL  109 (110)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=2.5e-18  Score=126.05  Aligned_cols=92  Identities=29%  Similarity=0.523  Sum_probs=84.6

Q ss_pred             CccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHH
Q 020239          110 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  189 (329)
Q Consensus       110 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  189 (329)
                      ...+.++.++||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            34566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHH
Q 020239          190 IKCGHDGVTSLL  201 (329)
Q Consensus       190 ~~~~~~~~v~~L  201 (329)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	329
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-34
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-27
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-25
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-23
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-23
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-19
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-21
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-17
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-13
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-18
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-17
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-16
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.002
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-15
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-15
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	8e-12
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-09
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	9e-09
d1ne6a1	136	b.82.3.2 (A:109-244) Regulatory subunit of Protein	3e-07
d1vp6a_	133	b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo	4e-07
d1cx4a1	136	b.82.3.2 (A:130-265) Regulatory subunit of Protein	5e-07
d1cx4a2	147	b.82.3.2 (A:266-412) Regulatory subunit of Protein	8e-07
d1ne6a2	132	b.82.3.2 (A:245-376) Regulatory subunit of Protein	2e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.001
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.001
d1o7fa2	155	b.82.3.2 (A:13-167) Regulatory domain of Epac2, do	1e-05
d1wgpa_	137	b.82.3.2 (A:) Probable cyclic nucleotide-gated ion	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	4e-05
d1o7fa3	124	b.82.3.2 (A:322-445) Regulatory domain of Epac2, d	1e-04
d2oz6a2	134	b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei	0.001
d2gaua2	142	b.82.3.2 (A:10-151) Transcriptional regulator PG03	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 1e-34
 Identities = 52/218 (23%), Positives = 84/218 (38%), Gaps = 35/218 (16%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           A++ G L  +K L++ GA  N ++    +PLH+A   G+ ++  +L+Q    +N K K  
Sbjct: 7   ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 66

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLN--------------------------------- 209
            TPL  A + GH  +  LL++  A+ N                                 
Sbjct: 67  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 126

Query: 210 -VDDAGSF-LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE 267
            +   G   L +A   G   + + +L     PN+   +  TPLHVA       + KLLL 
Sbjct: 127 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 186

Query: 268 AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ 305
            G S  +    G TPL          + + L     + 
Sbjct: 187 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 224

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 2e-27
 Identities = 50/177 (28%), Positives = 84/177 (47%), Gaps = 2/177 (1%)

Query: 125 YHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 184
               +   + L++ G   N     G +PLHLA   G+ ++   L+ K  + N+ +K G T
Sbjct: 207 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 266

Query: 185 PLLEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
           PL    + GH  V  +L+K G  ++       + L +A   G+  L+K +L +  D N++
Sbjct: 267 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK 326

Query: 243 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
                +PLH AA +G   +  LLL+ GAS       G TPL   +  G  ++  +L+
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 3e-25
 Identities = 60/215 (27%), Positives = 89/215 (41%), Gaps = 10/215 (4%)

Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
            + AA +G +   + L+   A  N    +G +PLH+A      DI   L+ +G   +   
Sbjct: 136 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 195

Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGV 237
             G TPL  A K     V   L++ G S N +       L +A   G ++++  +LS   
Sbjct: 196 WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQA 255

Query: 238 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 297
           + N  +    TPLH+ A EG   +A +L++ G  V    R G TPL      GN  L+K 
Sbjct: 256 NGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 315

Query: 298 LEDAKCTQ-------LSEFHY-CSQGMIGIAENLL 324
           L   +           S  H    QG   I   LL
Sbjct: 316 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 350

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 3e-24
 Identities = 49/187 (26%), Positives = 72/187 (38%), Gaps = 35/187 (18%)

Query: 152 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 211
           PLH+A+  G+  I   L+Q+G   N+ +    TPL  A + GH  V   L++  A +N  
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 62

Query: 212 DAGSF--LCIAVARGDSDLLKRVLSNGVDP------------------------------ 239
                  L  A   G ++++K +L N  +P                              
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 240 ---NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 296
                      TPLHVAA  G   +A+LLLE  A      + G TPL       N +++K
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 182

Query: 297 LLEDAKC 303
           LL     
Sbjct: 183 LLLPRGG 189

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.9 bits (219), Expect = 2e-20
 Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 2/181 (1%)

Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
            + AA  G +  +  L+   A        G +PLH+A   G   +   L+++    N   
Sbjct: 103 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 162

Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGV 237
           K G TPL  A+   +  +  LL+  G S +      +  L IA  +   ++ + +L  G 
Sbjct: 163 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 222

Query: 238 DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKL 297
             N+      TPLH+AA EG   M  LLL   A+    ++ G TPL      G+  +  +
Sbjct: 223 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 282

Query: 298 L 298
           L
Sbjct: 283 L 283

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (204), Expect = 2e-18
 Identities = 30/96 (31%), Positives = 43/96 (44%)

Query: 217 LCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD 276
           L +A   G   ++K +L  G  PN  +    TPLH+AA  G   +AK LL+  A V  K 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 63

Query: 277 RWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYC 312
           +   TPL      G+ N++KLL +            
Sbjct: 64  KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 99

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 9e-16
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 125 YHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNT 184
           ++G++  +K L++  AD+N     G SPLH A  +G+ DI   L++ G   N     G T
Sbjct: 306 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTT 365

Query: 185 PLLEAIKCGHDGVTSLL---VKEGASLNVDD 212
           PL  A + G+  VT +L     E + + V D
Sbjct: 366 PLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 1e-15
 Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 2/108 (1%)

Query: 184 TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLSNGVDPNS 241
           TPL  A   GH  +   L++ GAS NV +      L +A   G +++ K +L N    N+
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 242 RDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMC 289
           +  D +TPLH AA  G   M KLLLE  A+       G+TPL      
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 109

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (182), Expect = 2e-15
 Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 34/162 (20%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
            A  G +     LI+ G  ++ T   G +PLH+A+  G   +  FL+Q   D+N K K G
Sbjct: 271 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG 330

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR 242
            +PL +A + GH  + +LL                               L NG  PN  
Sbjct: 331 YSPLHQAAQQGHTDIVTLL-------------------------------LKNGASPNEV 359

Query: 243 DYDHRTPLHVAASEGLYLMAKLL---LEAGASVFTKDRWGNT 281
             D  TPL +A   G   +  +L    +  + V   D+   +
Sbjct: 360 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 401

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 6e-09
 Identities = 20/56 (35%), Positives = 26/56 (46%)

Query: 248 TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC 303
           TPLHVA+  G   + K LL+ GAS    +    TPL      G+  + K L   K 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 57

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (245), Expect = 4e-25
 Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 37/217 (17%)

Query: 118 LRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYED------------- 163
           L   + AY G L +LK  I A  +   +TD D R+ LH A S G+ +             
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 64

Query: 164 --------------------ITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK 203
                               I   L+ KG  +N  ++ G TPL  A       +  +L++
Sbjct: 65  DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE 124

Query: 204 EGASLNVDDA--GSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLM 261
            GA+ +  D    + +  A A+G+  ++  +L      N +D +  TPLH+A  E     
Sbjct: 125 GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEE 184

Query: 262 AKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           AKLL+  GAS++ +++   TPL   +  G   ++K +
Sbjct: 185 AKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 2e-23
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 3/135 (2%)

Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH 194
           L+  GA +N  + +G +PLH A S+   +I + L++ G + + KD +  T +  A   G+
Sbjct: 89  LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 148

Query: 195 DGVTSLLVKEGASLNVDDA--GSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHV 252
             +  +L+   AS N+ D    + L +A      +  K ++S G      + + +TPL V
Sbjct: 149 LKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQV 208

Query: 253 AASEGLYLMAKLLLE 267
           A   GL L+ K ++E
Sbjct: 209 AK-GGLGLILKRMVE 222

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.0 bits (235), Expect = 3e-23
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 143 NKTDYDGRSPLHLATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAI----KCGHDGV 197
            +    G + L  A  +G+ ++   L+ + G D+N  D  G   L+ A+        + +
Sbjct: 142 ERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI 201

Query: 198 TSLLVKEGASLNVDDAGSF--LCIAVARGDSDLLKRVLS-NGVDPNSRDYDHRTPLHVAA 254
           T LL+  GA +NV        L +AV +    L++R+L    ++ N  D D +T L +A 
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261

Query: 255 SEGLYLMAKLLLEAGASVFTKD 276
              L  +A+LL + GAS    D
Sbjct: 262 ELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (209), Expect = 2e-19
 Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 133 KGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI-QKGVDINIKDKFGNTPLLEAIK 191
             L+  GAD+N     G++PL LA  + +  +   L+ Q+ ++IN  D  G T LL A++
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262

Query: 192 CGHDGVTSLLVKEGASLNVDD 212
                +  LL K GAS +  D
Sbjct: 263 LKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 4e-16
 Identities = 53/227 (23%), Positives = 82/227 (36%), Gaps = 51/227 (22%)

Query: 123 AAYHGDLYQLKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
           A  + D+  ++ L+  GA++N + +  G +PLH A     EDI   L++ G D  ++ K 
Sbjct: 12  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN 71

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDP 239
           G TP L A   G   +  L + +GA +N  D    +    A   G    LK +   G + 
Sbjct: 72  GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131

Query: 240 NSRDYDH----------RTPLHVAASEGLYLMAKL------------------------- 264
           N R               T L  AA +G   + K+                         
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191

Query: 265 -------------LLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
                        LL+ GA V  +   G TPL       +  L++ L
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 9e-13
 Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 13/164 (7%)

Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKD-KFGNTPLLEAIKCGHDGVTSLLVK--E 204
           +    L  A      D+   L++ G ++N ++ + G TPL  A++   + +  LL++   
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 205 GASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKL 264
              L   +  +   +A   G   LLK  LS G D N  D+   T    AA  G     K 
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 265 LLEAGASVFTKDRW----------GNTPLDEGRMCGNKNLIKLL 298
           L + GA+V  + +           G T L +    G+  ++K+L
Sbjct: 124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 4e-07
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 1/107 (0%)

Query: 217 LCIAVARGDSDLLKRVLSNGVDPNSRDYDH-RTPLHVAASEGLYLMAKLLLEAGASVFTK 275
           L  AV   D DL++++L  G + N ++ +   TPLH A       + +LLL  GA    +
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 276 DRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGMIGIAEN 322
            + G TP     + G+  L+KL             Y     +  A  
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY 115

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 88.6 bits (218), Expect = 8e-21
 Identities = 35/184 (19%), Positives = 62/184 (33%), Gaps = 22/184 (11%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGY----EDITLFLIQKGVDINIK 178
                +L  +K L++ G++    D  G S L  A               L      + ++
Sbjct: 114 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 173

Query: 179 DKFGNTPL------------LEAIKCGHDGVTSLLVKEGASLNV---DDAGSFLCIAVAR 223
           D    T L              A K   D +   +VK+         ++  S        
Sbjct: 174 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 233

Query: 224 GDSDLLKRVLSN---GVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGN 280
               +L+ +          N++D +  T L++AA  G   +   LL+ GA  F  ++ G 
Sbjct: 234 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL 293

Query: 281 TPLD 284
            P+D
Sbjct: 294 RPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.0 bits (188), Expect = 9e-17
 Identities = 33/201 (16%), Positives = 68/201 (33%), Gaps = 24/201 (11%)

Query: 122 SAAYHGDLYQLK-GLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
             ++   L ++         +LN   D  G +PLH  TS    ++   L++ G +    D
Sbjct: 78  HVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGD 137

Query: 180 KFGNTPLLEAI-------KCGHDGVTSLLVKEGASLN----------VDDAGSFLCIAVA 222
             G + L++A+           + +   L       +          +  +G   C A A
Sbjct: 138 NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA 197

Query: 223 RGDSDLLKRVL--SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLL---EAGASVFTKDR 277
           +   D+L   +         S   +  +  +    E    + + L         +  +D 
Sbjct: 198 KYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS 257

Query: 278 WGNTPLDEGRMCGNKNLIKLL 298
            G+T L+     GN +++  L
Sbjct: 258 NGDTCLNIAARLGNISIVDAL 278

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.8 bits (159), Expect = 6e-13
 Identities = 29/227 (12%), Positives = 69/227 (30%), Gaps = 21/227 (9%)

Query: 93  ESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYD-GRS 151
            S L++ +       +  + + +L        +         L    ++ N       + 
Sbjct: 16  SSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQ 75

Query: 152 PLHLATSRGYEDITLFLIQKGVDINIK-DKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
             H++     +++        +++NI  D+ GNTPL       +  +   LVK G++   
Sbjct: 76  QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY 135

Query: 211 DDAGSFLCIAVARGDSDLLKR------VLSNGVDPNSRDYDHRTPLHVAASEGLY----- 259
            D     C+  A    +          +          D  +RT LH             
Sbjct: 136 GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSA 195

Query: 260 --------LMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
                   LM  ++ +    + +      +  ++       ++++ L
Sbjct: 196 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL 242

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.5 bits (158), Expect = 1e-12
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 110 GKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLI 169
            K                +   LK +I     LN  D +G + L++A   G   I   L+
Sbjct: 222 EKESKPNDKNGERKDSILENLDLKWII--ANMLNAQDSNGDTCLNIAARLGNISIVDALL 279

Query: 170 QKGVDINIKDKFGNTPLLEAI 190
             G D  I +K G  P+    
Sbjct: 280 DYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.9 bits (154), Expect = 3e-12
 Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 34/151 (22%)

Query: 107 FHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITL 166
            H     + +     +A Y+ D+     + +    +     +  S  +       + I  
Sbjct: 181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILE 240

Query: 167 FLIQK---GVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVAR 223
            L  K      +N +D  G+T L  A + G+  +   L                      
Sbjct: 241 NLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL---------------------- 278

Query: 224 GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAA 254
                    L  G DP   +     P+   A
Sbjct: 279 ---------LDYGADPFIANKSGLRPVDFGA 300

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.9 bits (198), Expect = 2e-18
 Identities = 45/232 (19%), Positives = 76/232 (32%), Gaps = 53/232 (22%)

Query: 123 AAYHGDLYQLKGLIRAGAD---LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
           A  H     L  L+   A    L+  +  G++ LHLA   G       L   G  + + +
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFL----------------CIAVAR 223
           + G+T L  A +        +L++   S   D + ++L                  +   
Sbjct: 76  RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN 135

Query: 224 GDSDLLKRVLSNGVDPNSRDYD----------------------------------HRTP 249
            +++   R     +   + +YD                                   RTP
Sbjct: 136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

Query: 250 LHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301
           LH+A       + +LLL+AGA    +   G TPL    +  N  L +LL   
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.0 bits (167), Expect = 4e-14
 Identities = 32/192 (16%), Positives = 57/192 (29%), Gaps = 19/192 (9%)

Query: 142 LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD---INIKDKFGNTPLLEAIKCGHDGVT 198
                 DG + LHLA    +E    FL+        +++++  G T L  A   G     
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 199 SLLVKEGASLNVDDAGSFLC--IAVARGDSDLLKRVLSNGVDPN--------------SR 242
             L   GA + V + G      +A           +L                     + 
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 243 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 302
           D  H      +             +    +  ++  G+TPL    +  +  +++LL DA 
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAG 181

Query: 303 CTQLSEFHYCSQ 314
                    C +
Sbjct: 182 ADLNKPEPTCGR 193

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.3 bits (155), Expect = 2e-12
 Identities = 34/165 (20%), Positives = 57/165 (34%), Gaps = 17/165 (10%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSP--------------LHLATSRGYEDITLFL 168
           A           L++      +   D                     +      +     
Sbjct: 85  ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144

Query: 169 IQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG---SFLCIAVARGD 225
               + +  ++  G+TPL  A+      +  LL   GA LN  +     + L +AV    
Sbjct: 145 EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA 204

Query: 226 SDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
           + +L+ +L  G DP +R Y  RTPL  A      ++A+LL   GA
Sbjct: 205 ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 2e-10
 Identities = 29/166 (17%), Positives = 50/166 (30%), Gaps = 1/166 (0%)

Query: 7   VARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFF 66
           +A           LL  R    R  S T      +         +   +Q      EE  
Sbjct: 84  LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR 143

Query: 67  LPGEVIMEQGNVIDQLYFVCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYH 126
                +  +    D    +   V+ K++ +     ++    +  +         + A   
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT-PLHLAVEA 202

Query: 127 GDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKG 172
                L+ L++AGAD     Y GR+PL  A  R    +   L   G
Sbjct: 203 QAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (139), Expect = 2e-10
 Identities = 20/65 (30%), Positives = 28/65 (43%)

Query: 147 YDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGA 206
             GR+PLHLA       +   L++ G D   +   G TPL  A+   +  +  LL   GA
Sbjct: 190 TCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

Query: 207 SLNVD 211
               D
Sbjct: 250 PEPED 254

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 77.9 bits (190), Expect = 1e-17
 Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 37/205 (18%)

Query: 132 LKGLIRAGADLN-KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI 190
           +  L+  GA+LN   D  G + LHLA      D    L+  G D N +D  G TPL  A+
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAV 64

Query: 191 KCGHDGVTSL----------------------------------LVKEGASLNVDDAG-- 214
                GV  +                                  L+   A +N  D    
Sbjct: 65  AADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGK 124

Query: 215 SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFT 274
           + L  A A  +++ +  +L +  + +++D    TPL +AA EG Y  +K LL+  A+   
Sbjct: 125 TALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREI 184

Query: 275 KDRWGNTPLDEGRMCGNKNLIKLLE 299
            D     P D      + ++++LL+
Sbjct: 185 TDHMDRLPRDVASERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 226 SDLLKRVLSNGVDPNSR-DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 284
           + ++  +L+ G + N+  D    T LH+AA       AK LL+AGA   ++D  G TPL 
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLH 61

Query: 285 EGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGM 316
                    + ++L   + T L+   +     
Sbjct: 62  AAVAADAMGVFQILLRNRATNLNARMHDGTTP 93

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 79.9 bits (196), Expect = 2e-17
 Identities = 43/297 (14%), Positives = 80/297 (26%), Gaps = 34/297 (11%)

Query: 28  VRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCH 87
                Q   +P+I   +LF+   S     ++   ++E       +    N+      +C 
Sbjct: 10  YENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIH--IFLPGTKNMEQVRQLLCL 67

Query: 88  GVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLK---GLIRAGADLNK 144
                  N   KQ+ SD      K E    +    AA  G    L     L+ +   +  
Sbjct: 68  --YYAHYNRNAKQLWSDAHKKGIKSEVICFV----AAITGCSSALDTLCLLLTSDEIVKV 121

Query: 145 TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK--FGNTPLLEAIKCGHDGVTSLLV 202
              +      LA   G+  +   L +      +             A + GH  V + L 
Sbjct: 122 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC 181

Query: 203 KEGASLNVDDAGS-----FLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG 257
           +   +       +     F   AV RG  +++  +L   V     +           +  
Sbjct: 182 ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPF 241

Query: 258 LYLMAKLLLE----------------AGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
           +      L E                   S   +  +    L         + I+ L
Sbjct: 242 IARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFL 298

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 76.1 bits (186), Expect = 4e-16
 Identities = 27/212 (12%), Positives = 55/212 (25%), Gaps = 30/212 (14%)

Query: 143 NKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAIKCGHDGVTSLL 201
           N  +Y+    L L     +E++    I      +          +        + V  LL
Sbjct: 6   NIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLL 65

Query: 202 VKEGASLNVDDA-------------GSFLCIAVARGDSDLLKRV---LSNGVDPNSRDYD 245
               A  N +                    +A   G S  L  +   L++         +
Sbjct: 66  CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE 125

Query: 246 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDR--WGNTPLDEGRMCGNKNLIKLLEDAKC 303
           +     +AA  G   +   L E   +                    G+ +++  L +   
Sbjct: 126 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAP 185

Query: 304 TQLSE-----------FHYCSQGMIGIAENLL 324
           T+ +            +    +G   +   LL
Sbjct: 186 TEATAMIQAENYYAFRWAAVGRGHHNVINFLL 217

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 71.5 bits (174), Expect = 1e-14
 Identities = 31/204 (15%), Positives = 51/204 (25%), Gaps = 28/204 (13%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTD--YDGRSPLHLATSRGYEDITLFLIQKGVDIN---I 177
           AA +G L+ L  L              +      LA   G+  +   L +         I
Sbjct: 133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 192

Query: 178 KDKFGNTPLLEAIKCGHDGVTSLLVKEG---------ASLNVDDAGSFLCIAVARGDSDL 228
           + +        A+  GH  V + L+                 +   +           ++
Sbjct: 193 QAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEM 252

Query: 229 ---LKRVLSNGV------DPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA-----SVFT 274
               K    +GV          + +     L     E L    + LL            T
Sbjct: 253 HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTAT 312

Query: 275 KDRWGNTPLDEGRMCGNKNLIKLL 298
                N  L      GN+    LL
Sbjct: 313 IPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 56.8 bits (136), Expect = 8e-10
 Identities = 25/174 (14%), Positives = 44/174 (25%), Gaps = 34/174 (19%)

Query: 124 AYHGDLYQLKGLIRAGADLN---KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 180
           A +G L+ L  L               +  +    A  RG+ ++  FL+   V +   + 
Sbjct: 169 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI 228

Query: 181 F----------------------GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLC 218
                                   +     +   G   +    V +   L        L 
Sbjct: 229 HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDL----VTKSECLQGFYMLRNLI 284

Query: 219 IAVARGDSDLLKRVLSNGVDP-----NSRDYDHRTPLHVAASEGLYLMAKLLLE 267
                   D ++ +LS           +   D    L +A   G      LLL 
Sbjct: 285 RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 8/53 (15%), Positives = 13/53 (24%), Gaps = 5/53 (9%)

Query: 123 AAYHGDLYQLKGLIRAGAD-----LNKTDYDGRSPLHLATSRGYEDITLFLIQ 170
                 L  ++ L+                D    L LA   G +     L+ 
Sbjct: 286 RNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 5e-15
 Identities = 40/218 (18%), Positives = 78/218 (35%), Gaps = 44/218 (20%)

Query: 123 AAYHGDLYQLKGLI----RAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
           A   G+L  +  L+    + G +L+  +   ++PLHLA       +   L+  G      
Sbjct: 10  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 69

Query: 179 DKFGNTPLLEAIKCGHDGVTSLLVKEGA-------------------------------- 206
           D+ G T    A +         L+   A                                
Sbjct: 70  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 129

Query: 207 --------SLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGL 258
                   ++++    S L  AV      +++ +L +G + N++ Y   + LH A+  GL
Sbjct: 130 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL 189

Query: 259 YLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK 296
             + + L+ +GA    K+   +TPL   R     ++++
Sbjct: 190 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 3e-11
 Identities = 22/76 (28%), Positives = 38/76 (50%)

Query: 119 RFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
               A  +  L  ++ L++ GA++N   Y G S LH A+ RG   +   L++ G D ++K
Sbjct: 147 PLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK 206

Query: 179 DKFGNTPLLEAIKCGH 194
           +   +TPL+ A     
Sbjct: 207 NCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 7e-09
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 148 DGRSPLHLATSRGYEDITLFLI----QKGVDINIKDKFGNTPLLEAIKCGH 194
           DG +PLH+A  +G       L+    Q G +++I +    TPL  A+    
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 4e-08
 Identities = 16/45 (35%), Positives = 26/45 (57%)

Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDI 164
            +SA+  G L  ++ L+R+GAD +  +    +PL +A SR   DI
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 4/43 (9%)

Query: 245 DHRTPLHVAASEGLYLMAKLLL----EAGASVFTKDRWGNTPL 283
           D  TPLH+A  +G       L+    + G  +   +    TPL
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPL 44

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 27/72 (37%)

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS 241
           G+TPL  A+  G+                                 L+      G + + 
Sbjct: 3   GDTPLHIAVVQGNLPAVHR---------------------------LVNLFQQGGRELDI 35

Query: 242 RDYDHRTPLHVA 253
            +   +TPLH+A
Sbjct: 36  YNNLRQTPLHLA 47

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 71.7 bits (174), Expect = 5e-15
 Identities = 17/65 (26%), Positives = 33/65 (50%)

Query: 139 GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVT 198
           G++ +K D DG++P+ LA   G  ++ ++LIQ+G  +   D   +T    A    H  + 
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV 270

Query: 199 SLLVK 203
            +  +
Sbjct: 271 DIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 67.8 bits (164), Expect = 1e-13
 Identities = 41/238 (17%), Positives = 73/238 (30%), Gaps = 58/238 (24%)

Query: 123 AAYHGDL--------YQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 174
            A +           ++ K  I AGAD+N  D D  +PL LA       +  +L++ G D
Sbjct: 40  IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD 99

Query: 175 INIKDKFGNTPLLEAIKCGHDGVTSLLVKEG----------------ASLNVDDAGSFLC 218
             I +K   + L +A      G+   ++                     +   + G    
Sbjct: 100 PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV 159

Query: 219 IAVARGDSDLLKRVLSNGVDPNSRDYDHR------------------------------- 247
            +         K         +S  Y  R                               
Sbjct: 160 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE 219

Query: 248 ---TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK 302
              TP+ +AA EG   +   L++ GASV   D   +T     +   + N++ + +  +
Sbjct: 220 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.9 bits (146), Expect = 3e-11
 Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 25/167 (14%)

Query: 151 SPLHLAT-SRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLN 209
           SP+ L T + G   IT  + ++ V+I    +   T L           +  L+   A   
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEA--- 57

Query: 210 VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG 269
                               K  ++ G D N+ D D  TPL +A       +   L++AG
Sbjct: 58  --------------------KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG 97

Query: 270 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEFHYCSQGM 316
           A     ++   + L +     +  ++  + ++   +         GM
Sbjct: 98  ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM 144

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 56.7 bits (135), Expect = 7e-10
 Identities = 38/234 (16%), Positives = 63/234 (26%), Gaps = 59/234 (25%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFL--------IQKGVD 174
               G     + + R   ++       R+ LH   S    + +  L        I  G D
Sbjct: 8   TEAAGSYAITEPITRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 66

Query: 175 INIKDKFGNTPLLEAI---------------------------------KCGHDGVTSLL 201
           +N  D   NTPL+ A+                                      G+   +
Sbjct: 67  VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 126

Query: 202 VKEG----------------ASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYD 245
           +                     +   + G     +         K         +S  Y 
Sbjct: 127 LNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK 186

Query: 246 HRTPLHVAASEGLYLMAK-LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL 298
            RT LH AA      + K L+ E G++   +D  G TP+      G   ++  L
Sbjct: 187 GRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 69.7 bits (169), Expect = 3e-14
 Identities = 29/159 (18%), Positives = 52/159 (32%), Gaps = 31/159 (19%)

Query: 107 FHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITL 166
             + +   ++                + L     +  +    G + LH+A ++GY ++  
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216

Query: 167 FLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDS 226
            LIQ   D+NIKD  G TPL  A   G +    +L                         
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL------------------------- 251

Query: 227 DLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265
                 + N  D  + +   +T   VA  + L  + +L 
Sbjct: 252 ------VENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.1 bits (162), Expect = 2e-13
 Identities = 57/241 (23%), Positives = 93/241 (38%), Gaps = 36/241 (14%)

Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD 179
           F +A   GD  ++  L+  GAD+N  + DG + LH A      D+  FL++ G +IN  D
Sbjct: 44  FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103

Query: 180 KFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCI-------------------- 219
             G  PL  A  CG+  +   L+ +GA +   ++     +                    
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163

Query: 220 ---------AVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA 270
                           D  + + S  ++         T LHVAA++G   + KLL++A  
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY 223

Query: 271 SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC-------TQLSEFHYCSQGMIGIAENL 323
            V  KD  G TPL      G +   ++L +  C          + F    + ++G  E L
Sbjct: 224 DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEEL 283

Query: 324 L 324
            
Sbjct: 284 Q 284

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.1 bits (131), Expect = 2e-09
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 144 KTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV 197
           K  +D  +    A S G  +  L L+++G DIN  +  G T L +A    +  +
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.7 bits (117), Expect = 1e-07
 Identities = 32/136 (23%), Positives = 52/136 (38%)

Query: 187 LEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDH 246
           L+        +   +VK   +    D G+    A + GD++ + R+L  G D N  + D 
Sbjct: 14  LKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDG 73

Query: 247 RTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL 306
            T LH A  +    M K L+E GA++   D  G  PL     CG  ++ + L        
Sbjct: 74  LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133

Query: 307 SEFHYCSQGMIGIAEN 322
           +        +    E 
Sbjct: 134 AVNSEGDTPLDIAEEE 149

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI 177
           AA+ G     + L+    D+   +  G++   +A     EDI  +L +     N+
Sbjct: 239 AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD----EDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 3/110 (2%)

Query: 178 KDKF-GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRVLS 234
           K KF      L A   G       L++ GA +N  +    + L  A    + D++K ++ 
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE 94

Query: 235 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD 284
           NG + N  D +   PLH AAS G   +A+ L+  GA V   +  G+TPLD
Sbjct: 95  NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (165), Expect = 4e-14
 Identities = 36/207 (17%), Positives = 63/207 (30%), Gaps = 46/207 (22%)

Query: 148 DGRSPLHLATSRGYEDITLFLIQ----KGVDINIKDKFGNTPLLEAIKCGH--------- 194
           DG S LHLA     + +T+ +I+        +N ++    TPL  A+             
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 195 --------------------------------DGVTSLLVKEGASLNVDDAGSFLCIAVA 222
                                              T+  +         +  + L +A  
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 120

Query: 223 RGDSDLLKRVLSNGVDP-NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNT 281
            G   +++ ++S G D       + RT LH+A       +  LLL+ GA V      G +
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 180

Query: 282 PLDEGRMCGNKNLIKLLEDAKCTQLSE 308
           P        +  + + L       L  
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLENLQM 207

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (138), Expect = 1e-10
 Identities = 38/195 (19%), Positives = 64/195 (32%), Gaps = 46/195 (23%)

Query: 123 AAYHGD----LYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIK 178
           A  H +    +  ++ +    A LN  +   ++PLHLA      +I   L+  G D  ++
Sbjct: 9   AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 68

Query: 179 DKFG---------------------------------------NTPLLEAIKCGHDGVTS 199
           D  G                                       +T L  A   G+ G+  
Sbjct: 69  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 128

Query: 200 LLVKEGAS---LNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASE 256
           LLV  GA        +  + L +AV   + DL+  +L  G D N   Y   +P  +    
Sbjct: 129 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR 188

Query: 257 GLYLMAKLLLEAGAS 271
               + + L +    
Sbjct: 189 PSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 5e-07
 Identities = 14/56 (25%), Positives = 22/56 (39%)

Query: 125 YHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 180
              +   +  L++ GAD+N+  Y G SP  L   R    I   L Q  ++      
Sbjct: 154 DLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 209

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.4 bits (145), Expect = 8e-12
 Identities = 27/142 (19%), Positives = 46/142 (32%), Gaps = 14/142 (9%)

Query: 148 DGRSPLHL---ATSRGYEDITLFLIQKGVDINIK------DKFGNTPLLEAIKCGHDG-- 196
           D  + LH    A         L     GVD+  K       +   T L  A++       
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 197 -VTSLLVKEGASLNV--DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVA 253
            +   LV+   +L+       + L       +++ LK +L         +    TPL +A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 254 ASEGLYLMAKLLLEAGASVFTK 275
                    +LL +A +  F  
Sbjct: 122 KRLKHEHCEELLTQALSGRFNS 143

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.0 bits (133), Expect = 3e-10
 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 3/154 (1%)

Query: 148 DGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP--LLEAIKCGHDGVTSLLVKEG 205
           D    L  A   G +D    L+  G      D  G +P  L             L     
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 206 ASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL 265
                    + L +A + G +++++ +L +G D N++D    T LH A       + +LL
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

Query: 266 LEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE 299
           ++ GA V T+ ++  T  D     GN++L ++L+
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.6 bits (119), Expect = 2e-08
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 3/145 (2%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA  G   +++ L+  GA        G SPLHLA   G+   T  L++ GV  + + K  
Sbjct: 9   AARAGQDDEVRILMANGAPFTTDWL-GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG--SFLCIAVARGDSDLLKRVLSNGVDPN 240
            TPL  A   GH  +  +L+K GA +N  D    + L  A      ++++ ++  G D +
Sbjct: 68  RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127

Query: 241 SRDYDHRTPLHVAASEGLYLMAKLL 265
           ++    +T   ++   G   +A++L
Sbjct: 128 TQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 120 FNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFL 168
            + A  H     ++ LI+ GAD++      ++   ++   G ED+   L
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 4e-10
 Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 9/185 (4%)

Query: 123 AAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKF 181
           A    + ++++ L+ +  + L + D DGR PLH + S    +IT FL+ K  ++N+ D  
Sbjct: 7   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 66

Query: 182 GNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAG-------SFLCIAVARGDSDLLKRVLS 234
            ++           G   ++          D         + L +AV +   ++ + ++ 
Sbjct: 67  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 126

Query: 235 NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG-ASVFTKDRWGNTPLDEGRMCGNKN 293
           NG     +D  ++ PLH AAS G   + +LL   G ++V  +D+ G TPL      G+ +
Sbjct: 127 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 186

Query: 294 LIKLL 298
              LL
Sbjct: 187 AAVLL 191

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 1e-09
 Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 8/146 (5%)

Query: 152 PLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
           PLH A     +  +   L  K   +  KD+ G  PL  ++      +TS L+ +  ++N+
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 211 DDAGSFLCIAV-------ARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAK 263
           DD                   +            D N       T LH+A  +  + +++
Sbjct: 63  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 122

Query: 264 LLLEAGASVFTKDRWGNTPLDEGRMC 289
            L+E GASV  KD++   PL      
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASV 148

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 33/137 (24%), Positives = 43/137 (31%), Gaps = 34/137 (24%)

Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD-INIKDKFGNTPLLEAIKCG 193
           LI  GA +   D   + PLH A S G   +   L   G   +N +DK G TPL  A+  G
Sbjct: 124 LIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEG 183

Query: 194 HDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVA 253
           H     LLV                                 G + +  D        VA
Sbjct: 184 HGDAAVLLV------------------------------EKYGAEYDLVDNKGAKAEDVA 213

Query: 254 ASEGLYLMAKLLLEAGA 270
            +E    + K  L    
Sbjct: 214 LNEQ---VKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 9e-07
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 1/78 (1%)

Query: 217 LCIAVARGDSDLLKRVL-SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK 275
           L  A    +   ++ +L S       +D D R PLH + S   + +   LL    +V   
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63

Query: 276 DRWGNTPLDEGRMCGNKN 293
           D   ++      +  +  
Sbjct: 64  DYPDDSGWTPFHIACSVG 81

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)

Query: 135 LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD 174
           + + GA+ +  D  G     +A +   E +  F +   VD
Sbjct: 192 VEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 6e-06
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 248 TPLHVAASEGLYLMAKLLLEA-GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQL 306
            PLH A  E  +   + LL +  + +  KD+ G  PL          +   L        
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 307 SEFHYCSQGM 316
            + +    G 
Sbjct: 62  LDDYPDDSGW 71

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 35/139 (25%), Positives = 48/139 (34%), Gaps = 34/139 (24%)

Query: 161 YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIA 220
           + +++ FLI+ G  + IKDKF   PL  A   G   +  LL   G               
Sbjct: 117 WFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG--------------- 161

Query: 221 VARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA-GASVFTKDRWG 279
                              N +D    TPL  A +EG    A LL+E  GA     D  G
Sbjct: 162 ---------------KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 206

Query: 280 NTPLDEGRMCGNKNLIKLL 298
               D   +  N+ + K  
Sbjct: 207 AKAED---VALNEQVKKFF 222

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (125), Expect = 3e-09
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
           + L  A +RG  +    L+Q  V++N ++ FG T L        +    LL++       
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 211 DDAG-SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEG-LYLMAKLLLEA 268
           D  G + +  A   G  D L+ +L    D N  D +   PLH+AA EG L ++  L+   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 269 GASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA 301
            ++V  ++  G+T  D  R+ G   ++ L++  
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (119), Expect = 2e-08
 Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 4/150 (2%)

Query: 123 AAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFG 182
           AA  GDL QL  L++   ++N  +  GR+ L +      E     L+ +G + ++KD+ G
Sbjct: 8   AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIAR-RLLLRGANPDLKDRTG 66

Query: 183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDP--- 239
              + +A + G       L++  A +N++D    L + +A  +  L              
Sbjct: 67  FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 126

Query: 240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAG 269
             R++   T   +A   G   +  L+   G
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 214 GSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLH 251
           G+ L  A ARGD + L  +L N V+ N+++   RT L 
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ 39

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 6e-09
 Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 3/151 (1%)

Query: 152 PLHLATSRG-YEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVK-EGASLN 209
            L  A +RG  +++   L ++ V  +  ++FG T L   +         LL +    ++ 
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 210 VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG 269
                S +  A   G  D LK ++ +G D N  D     P+H+A  EG   +   L  A 
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL-AAE 123

Query: 270 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLED 300
           + +  +D  G TPL+     G ++L+ +L+ 
Sbjct: 124 SDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 9e-09
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 1/147 (0%)

Query: 122 SAAYHGDLYQLKGLI-RAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDK 180
            AA  GD+ +++ L+ R     +  +  G++ L +            L Q          
Sbjct: 8   GAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTS 67

Query: 181 FGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPN 240
             +     A     D +  L+         D  G+       +     +   L+   D +
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH 127

Query: 241 SRDYDHRTPLHVAASEGLYLMAKLLLE 267
            RD    TPL +A   G   +  +L  
Sbjct: 128 RRDARGLTPLELALQRGAQDLVDILQG 154

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 14/49 (28%), Positives = 22/49 (44%)

Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
          IEK  LF        + I   +    F+ GE +++QG+  D  Y +  G
Sbjct: 22 IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQG 70

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

 Score = 46.3 bits (109), Expect = 4e-07
 Identities = 14/49 (28%), Positives = 21/49 (42%)

Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
          +  V LF+      + +IV  L       G VI   G   D+++FV  G
Sbjct: 13 VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEG 61

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.3 bits (109), Expect = 5e-07
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
           + + LFK    E ++Q++  + E+    GE +++QG+  D  Y +  G
Sbjct: 18 CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRG 66

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 8e-07
 Identities = 12/50 (24%), Positives = 22/50 (44%)

Query: 39 YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
          +IE +   K        ++V  +  + +  GE I+ QG+  D  + V  G
Sbjct: 3  FIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESG 52

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.4 bits (104), Expect = 2e-06
 Identities = 11/50 (22%), Positives = 21/50 (42%)

Query: 39 YIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
          ++ KVS+ +         +   L    F  G+ I+ QG   D+ + +  G
Sbjct: 3  FLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEG 52

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 4e-06
 Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 5/125 (4%)

Query: 151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV 210
           + L  ++  G  D+   +I +  D ++ +  G T L  A+  GH  +   LV+ G ++N 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 211 DDAG--SFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHR---TPLHVAASEGLYLMAKLL 265
            D+   + L  A +  +  + K ++ +G    +  Y              EG    ++ L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 266 LEAGA 270
                
Sbjct: 123 YGVQE 127

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 26/124 (20%), Positives = 41/124 (33%), Gaps = 5/124 (4%)

Query: 184 TPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD 243
             LL++   G   +   ++ E    ++ +      +  A                 N   
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 244 YDHR--TPLHVAASEGLYLMAKLLLEAGASVFTKDRW-GNTPLD--EGRMCGNKNLIKLL 298
            D    TPLH AAS     + K L+E+GA+VF        T  D  E    G     + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 299 EDAK 302
              +
Sbjct: 123 YGVQ 126

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 9/53 (16%)

Query: 133 KGLIRAGADLN-KTDYDGRSPLHL--ATSRGYEDITLFLIQKGVDINIKDKFG 182
           K L+ +GA +   T  D ++          GY   + FL        +++K G
Sbjct: 84  KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL------YGVQEKMG 130

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 35 LYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
          +    ++ V  F+      + QI +  + E    G  +  QG++    Y V  G
Sbjct: 21 IIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAG 74

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.1 bits (95), Expect = 3e-05
 Identities = 10/49 (20%), Positives = 24/49 (48%)

Query: 40 IEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
          + +V LF+      ++ I  RL    F     ++ +G+ ++++ F+  G
Sbjct: 8  VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRG 56

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-05
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 2/119 (1%)

Query: 152 PLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD 211
            L  A +RG  +    L++ G + N  + +G  P+   +         LL+        D
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 212 DAGSFLCIAVARGDSDLLKR--VLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA 268
            A     +  A  +  L     +   G   + RD   R P+ +A   G   +A+ L  A
Sbjct: 66  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA 124

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 1/52 (1%)

Query: 40 IEKVSLFKGCSSEFINQIVIRL-HEEFFLPGEVIMEQGNVIDQLYFVCHGVL 90
          +  +      S+    ++   L  E     G V+  QG      Y +  G +
Sbjct: 12 LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSV 63

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 10/67 (14%), Positives = 25/67 (37%)

Query: 52  EFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLGKESNLRLKQVESDITFHIGK 111
           + +++++   H   +     I+  G+  + L+F+  G +         +       + G 
Sbjct: 3   KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGD 62

Query: 112 HEAELAL 118
              EL L
Sbjct: 63  FFGELGL 69

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

 Score = 34.8 bits (79), Expect = 0.004
 Identities = 4/44 (9%), Positives = 17/44 (38%)

Query: 45 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHG 88
          ++   + E    +   +          +  +G++ + L+++  G
Sbjct: 8  VWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEG 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	329
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	85.73

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.2e-38  Score=264.72  Aligned_cols=192  Identities=25%  Similarity=0.263  Sum_probs=175.5

Q ss_pred             chhhhHHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHH
Q 020239          113 EAELALRFNSAAYHGDLYQLKGLIRAGAD---LNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEA  189 (329)
Q Consensus       113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A  189 (329)
                      +.+|.||||+|++.|+.+++++|++.|++   ++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A   85 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA   85 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhh
Confidence            45678999999999999999999999887   567788999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCC-------------------------------------------------cCCCCcHHHHH
Q 020239          190 IKCGHDGVTSLLVKEGASLN-------------------------------------------------VDDAGSFLCIA  220 (329)
Q Consensus       190 ~~~~~~~~v~~Ll~~~~~~~-------------------------------------------------~~~~~~~l~~A  220 (329)
                      +..++.+++++|++.+....                                                 ..++.||||+|
T Consensus        86 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A  165 (255)
T d1oy3d_          86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA  165 (255)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred             hccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccc
Confidence            99999999999976532111                                                 02356999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCC-CCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 020239          221 VARGDSDLLKRVLSNGVDPNSR-DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLE  299 (329)
Q Consensus       221 ~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~  299 (329)
                      +..++.+++++|++.+++.+.. +..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+
T Consensus       166 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll  245 (255)
T d1oy3d_         166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR  245 (255)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHH
T ss_pred             ccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            9999999999999999888764 578999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCC
Q 020239          300 DAKCT  304 (329)
Q Consensus       300 ~~~~~  304 (329)
                      ++|+.
T Consensus       246 ~~Ga~  250 (255)
T d1oy3d_         246 AHGAP  250 (255)
T ss_dssp             HTTCC
T ss_pred             HcCCC
Confidence            99995

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-36  Score=250.60  Aligned_cols=194  Identities=27%  Similarity=0.386  Sum_probs=170.9

Q ss_pred             ccccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcH
Q 020239          106 TFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTP  185 (329)
Q Consensus       106 ~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  185 (329)
                      .......|..+.||||+|+..|+.+++++|++.+.+....+..+.++++.++..++.+++++|+++|++++..|..|.||
T Consensus        27 ~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tp  106 (223)
T d1uoha_          27 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTP  106 (223)
T ss_dssp             GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCch
Confidence            33345577788899999999999999999999888888888888899999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHH
Q 020239          186 LLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAK  263 (329)
Q Consensus       186 l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~  263 (329)
                      ||+|+..|+.+++++|+++|++++..+  +.||||+|+..++.+++++|.+.+.+++.+|.+|+||||+|+..|+.++++
T Consensus       107 L~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~  186 (223)
T d1uoha_         107 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAK  186 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             hhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHH
Confidence            999999999999999999988877654  568999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 020239          264 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  300 (329)
Q Consensus       264 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~  300 (329)
                      +|+++|++++.+|..|+||||+| ..|+.+++++|++
T Consensus       187 ~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~  222 (223)
T d1uoha_         187 LLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHC
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccC
Confidence            99999999999999999999988 4688899998876

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-35  Score=240.14  Aligned_cols=209  Identities=31%  Similarity=0.378  Sum_probs=192.6

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239          117 ALRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  195 (329)
Q Consensus       117 ~~~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  195 (329)
                      ++.++.++..|+.+.|+.+++. +..++.+|..|+||||+|+..|+.+++++|+..+.+....+..+.++++.++..++.
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence            3788999999999999888755 567889999999999999999999999999999999888888999999999999999


Q ss_pred             HHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCcc
Q 020239          196 GVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF  273 (329)
Q Consensus       196 ~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~  273 (329)
                      +++++|++++++++..+  +.||||+|+..|+.+++++|+++|++++.++.+|.||||+|+..++.+++++|.+.|.+++
T Consensus        84 ~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~  163 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN  163 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             chhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceee
Confidence            99999999999888765  5699999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc-------cccccchhHHHHHhhhc
Q 020239          274 TKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE-------FHYCSQGMIGIAENLLL  325 (329)
Q Consensus       274 ~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~-------~~~~~~~~~~~~~~l~~  325 (329)
                      .+|..|+||||+|+..|+.++|++|+++|+.....       .+++..++-+|++.||.
T Consensus       164 ~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~~~~~~i~~~Ll~  222 (223)
T d1uoha_         164 IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMVE  222 (223)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCCTTHHHHHHHHHC
T ss_pred             eccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCHHHHhcccC
Confidence            99999999999999999999999999998865432       34567799999999874

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-34  Score=259.91  Aligned_cols=137  Identities=29%  Similarity=0.376  Sum_probs=75.9

Q ss_pred             HHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCC
Q 020239          162 EDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDP  239 (329)
Q Consensus       162 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~  239 (329)
                      .++++++.+.+...+..+..|.||++.|++.++.+++++|+++|++++...  ..|||+.++..++.++++++++.|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~i  323 (408)
T d1n11a_         244 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV  323 (408)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT
T ss_pred             HhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccc
Confidence            333333333333333334445555555555555555555555555554432  335555555555555566666666666


Q ss_pred             CCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHH
Q 020239          240 NSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  298 (329)
Q Consensus       240 ~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L  298 (329)
                      +.+|.+|.||||+|++.|+.++|++|+++|++++.+|..|+||||+|++.|+.++|++|
T Consensus       324 n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666655544

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.3e-35  Score=240.29  Aligned_cols=194  Identities=23%  Similarity=0.237  Sum_probs=172.8

Q ss_pred             hhHHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHH
Q 020239          116 LALRFNSAAYHGDLY----QLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIK  191 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~  191 (329)
                      |.||||+|+..|+.+    +++++...|+++|.+|.+|.||||+|+..|+.+++++|+++|++++.+|..|.|||++++.
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~   81 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE   81 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccc
Confidence            569999999999964    4556667799999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCc--------CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCchHHHHHHHhCcHHHH
Q 020239          192 CGHDGVTSLLVKEGASLNV--------DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRD-YDHRTPLHVAASEGLYLMA  262 (329)
Q Consensus       192 ~~~~~~v~~Ll~~~~~~~~--------~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~iv  262 (329)
                      .++.++++.|++.+.....        .++.||++.|+..++.+++++|+..|..++..+ .+|.||||+|+..|+.+++
T Consensus        82 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v  161 (221)
T d1iknd_          82 QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV  161 (221)
T ss_dssp             HTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHH
Confidence            9999999999998655433        235799999999999999999999999988776 6799999999999999999


Q ss_pred             HHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 020239          263 KLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSEF  309 (329)
Q Consensus       263 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~~  309 (329)
                      ++|+++|+|++.+|..|+||||+|+..++.+++++|.+.+.+.....
T Consensus       162 ~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~~~~~  208 (221)
T d1iknd_         162 SLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQML  208 (221)
T ss_dssp             HHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSC
T ss_pred             HHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCcccccc
Confidence            99999999999999999999999999999999999999977654443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=7e-34  Score=243.90  Aligned_cols=191  Identities=30%  Similarity=0.423  Sum_probs=171.1

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCC
Q 020239          115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGH  194 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  194 (329)
                      .+.|+|+.|+..|+.++|++|+++|+++|..|.+|.||||+|+..|+.+++++|+++|++....+..+.+||+.|+..++
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCcC--CCCcHHHHHHHcCCHHHHHHHHHC-C--------------------------CCCCCCCCC
Q 020239          195 DGVTSLLVKEGASLNVD--DAGSFLCIAVARGDSDLLKRVLSN-G--------------------------VDPNSRDYD  245 (329)
Q Consensus       195 ~~~v~~Ll~~~~~~~~~--~~~~~l~~A~~~g~~~~v~~Ll~~-g--------------------------~~~~~~~~~  245 (329)
                      .+++++|+++|...+..  ++.+++++|+..+..+.++.++.. +                          .+....+..
T Consensus       119 ~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (291)
T d1s70b_         119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS  198 (291)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred             cchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCC
Confidence            99999999998877665  456889988888888887777742 2                          234556778


Q ss_pred             CchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239          246 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  305 (329)
Q Consensus       246 g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~  305 (329)
                      |.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.++|++|+++|++.
T Consensus       199 g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv  258 (291)
T d1s70b_         199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDM  258 (291)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            899999999999999999999999999999999999999999999999999999998854

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=1e-33  Score=240.81  Aligned_cols=186  Identities=23%  Similarity=0.300  Sum_probs=167.5

Q ss_pred             hhhHHHHHHHHcCCHHHHHHH--------HHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHH
Q 020239          115 ELALRFNSAAYHGDLYQLKGL--------IRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPL  186 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~~v~~L--------l~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l  186 (329)
                      .+.||||+|+..|+.++++.|        ++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||+
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l  111 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  111 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccc
Confidence            467999999999999998776        567899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCC---C----------------------------------------------CCcCCCCcHH
Q 020239          187 LEAIKCGHDGVTSLLVKEGA---S----------------------------------------------LNVDDAGSFL  217 (329)
Q Consensus       187 ~~A~~~~~~~~v~~Ll~~~~---~----------------------------------------------~~~~~~~~~l  217 (329)
                      ++|+..++.++++++...+.   .                                              .....+.|+|
T Consensus       112 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  191 (277)
T d2fo1e1         112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  191 (277)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             cchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcc
Confidence            99999999988888865310   0                                              0012356899


Q ss_pred             HHHHHcCCHHHHHHHH-HCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHH
Q 020239          218 CIAVARGDSDLLKRVL-SNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIK  296 (329)
Q Consensus       218 ~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~  296 (329)
                      |+++..++.+++++++ ..+.+.+.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.++|+
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~  271 (277)
T d2fo1e1         192 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD  271 (277)
T ss_dssp             HHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999766 678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 020239          297 LLED  300 (329)
Q Consensus       297 ~L~~  300 (329)
                      +|++
T Consensus       272 lL~~  275 (277)
T d2fo1e1         272 IFDR  275 (277)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            9985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-32  Score=229.92  Aligned_cols=193  Identities=27%  Similarity=0.317  Sum_probs=161.3

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCChHHHHHHHcCcHHHHHHHHhcCCCccccC--------------
Q 020239          115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTD-YDGRSPLHLATSRGYEDITLFLIQKGVDINIKD--------------  179 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------  179 (329)
                      +..++|+.|++.|++++|++|+++|+++|.++ ..|.||||+|+..|+.+++++|++.+......+              
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            45689999999999999999999999998775 469999999999999999999998876542221              


Q ss_pred             --------------------------------------------------------------CCCCcHHHHHHHcCCHHH
Q 020239          180 --------------------------------------------------------------KFGNTPLLEAIKCGHDGV  197 (329)
Q Consensus       180 --------------------------------------------------------------~~g~t~l~~A~~~~~~~~  197 (329)
                                                                                    ..|.||||+|++.|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                                                                          457888888888888888


Q ss_pred             HHHHHHc-CCCCCcCC--CCcHHHHHHHc----CCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHH-CC
Q 020239          198 TSLLVKE-GASLNVDD--AGSFLCIAVAR----GDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE-AG  269 (329)
Q Consensus       198 v~~Ll~~-~~~~~~~~--~~~~l~~A~~~----g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~-~g  269 (329)
                      +++|+++ |++++..+  +.++...+...    +..+++++|+++|++++.++..|.||||.|+..|+.+++++|++ .|
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g  243 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH  243 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSS
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCC
Confidence            8888864 66776654  33444443332    23568888999999999999999999999999999999999998 59


Q ss_pred             CCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q 020239          270 ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLS  307 (329)
Q Consensus       270 ~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~  307 (329)
                      ++++.+|..|.||||+|+++|+.++|++|+++|++.-.
T Consensus       244 ~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         244 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc
Confidence            99999999999999999999999999999999997543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.4e-32  Score=229.77  Aligned_cols=157  Identities=29%  Similarity=0.337  Sum_probs=143.6

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCC--------------------
Q 020239          115 ELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVD--------------------  174 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--------------------  174 (329)
                      .+.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++.+++++|++.+..                    
T Consensus        44 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  123 (255)
T d1oy3d_          44 LGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT  123 (255)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------
T ss_pred             CCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccc
Confidence            345999999999999999999999999999999999999999999999999999765322                    


Q ss_pred             ---------------------------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC---CCCcHHHHHHHcC
Q 020239          175 ---------------------------INIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD---DAGSFLCIAVARG  224 (329)
Q Consensus       175 ---------------------------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~---~~~~~l~~A~~~g  224 (329)
                                                 ++.++..|.||||+|+..++.+++++|++.+++.+..   .+.||||+|+..|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~  203 (255)
T d1oy3d_         124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ  203 (255)
T ss_dssp             --------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             hHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccccccccccccccccccccccc
Confidence                                       1234567999999999999999999999998887754   4679999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCC
Q 020239          225 DSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGAS  271 (329)
Q Consensus       225 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~  271 (329)
                      +.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++||+
T Consensus       204 ~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         204 AASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999996

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-31  Score=221.63  Aligned_cols=188  Identities=27%  Similarity=0.344  Sum_probs=155.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccc---cCCCCCcHHHHHHHcC
Q 020239          118 LRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINI---KDKFGNTPLLEAIKCG  193 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~~g~t~l~~A~~~~  193 (329)
                      +|||+|+..|+.++++.|++. +.+++.+|.+|.||||+|+..|+.+++++|+++|++++.   .+..|.+|+++++..+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            788999999999999888875 467888888899999999999999999999998888764   4556888899888888


Q ss_pred             CHHHHHHHHHcCCCCCcC----CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCC
Q 020239          194 HDGVTSLLVKEGASLNVD----DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAG  269 (329)
Q Consensus       194 ~~~~v~~Ll~~~~~~~~~----~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g  269 (329)
                      ..++++.++..+...+..    ...++++.++..++.+++++|++.|.+.+.++..|+||||+|+..|+.+++++|++.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  161 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc
Confidence            888888888876654432    3457888888888888888888888888888888888888888888888888888876


Q ss_pred             -CCccCCCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCC
Q 020239          270 -ASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDA-KCTQ  305 (329)
Q Consensus       270 -~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~-~~~~  305 (329)
                       .+++.+|..|+||||+|+..|+.++|++|+++ |++.
T Consensus       162 ~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~  199 (229)
T d1ixva_         162 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY  199 (229)
T ss_dssp             CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS
T ss_pred             cccccccccccCCchhhhcccccHHHHHHHHHhcCCCC
Confidence             67788888888899988888888888888864 6543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.1e-31  Score=221.92  Aligned_cols=194  Identities=23%  Similarity=0.194  Sum_probs=175.1

Q ss_pred             ccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCC---CCCCCCChHHHHHHHcCcHHHHHHHHhcCCCc--cccCCCC
Q 020239          108 HIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLN---KTDYDGRSPLHLATSRGYEDITLFLIQKGVDI--NIKDKFG  182 (329)
Q Consensus       108 ~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g  182 (329)
                      .....+.++.||||+|+..|+.+++++|+++|++++   ..+..|.+|+|+++..+..++++.++..+...  ...+..+
T Consensus        26 ~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (229)
T d1ixva_          26 LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQG  105 (229)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTS
T ss_pred             cccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            445567788999999999999999999999999986   45678999999999999999999999987654  4466778


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCchHHHHHHHhCcH
Q 020239          183 NTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNG-VDPNSRDYDHRTPLHVAASEGLY  259 (329)
Q Consensus       183 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~  259 (329)
                      .++++.++..++.+++++|++.+...+..+  ++||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+|+..|+.
T Consensus       106 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~  185 (229)
T d1ixva_         106 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG  185 (229)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccH
Confidence            999999999999999999999988877654  579999999999999999999986 68899999999999999999999


Q ss_pred             HHHHHHHH-CCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239          260 LMAKLLLE-AGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCT  304 (329)
Q Consensus       260 ~iv~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~  304 (329)
                      +++++|++ .|++++.+|..|+||||+|+.   .+++++|+++|++
T Consensus       186 ~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         186 DAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             HHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            99999997 599999999999999999984   6899999999985

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.1e-31  Score=220.08  Aligned_cols=189  Identities=22%  Similarity=0.251  Sum_probs=131.9

Q ss_pred             hhhHHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHH
Q 020239          115 ELALRFNSAAYHGDLYQLKGLIR----AGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAI  190 (329)
Q Consensus       115 ~~~~~l~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  190 (329)
                      +|.||||+|+..|+.++++.|++    .|++++.+|..|.||||+|+..|+.+++++|+++|++.+..+..+.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            46799999999999999999875    78999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCC------cCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCchHHHHHHHhCcHHHHH
Q 020239          191 KCGHDGVTSLLVKEGASLN------VDDAGSFLCIAVARGDSDLLKRVLSNGVDPN-SRDYDHRTPLHVAASEGLYLMAK  263 (329)
Q Consensus       191 ~~~~~~~v~~Ll~~~~~~~------~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~iv~  263 (329)
                      ..++.++++.+........      .....++++.+.........+.|.....+.. .....|.++|+.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            9999988888776432211      1122345555555555555555554433322 22334555555555555555555


Q ss_pred             HHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020239          264 LLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKC  303 (329)
Q Consensus       264 ~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~  303 (329)
                      +++++|.+.+.+|..|.|||++|+..|+.+++++|+++|+
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Ga  201 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA  201 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCC
Confidence            5555555555555555555555555555555555555554

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=5.1e-30  Score=229.68  Aligned_cols=188  Identities=27%  Similarity=0.376  Sum_probs=169.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHH
Q 020239          118 LRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  197 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  197 (329)
                      ||||.||..|+.++|++|+++|+++|..|..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..|+.++
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~~   81 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNM   81 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCc-----------------------------------CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q 020239          198 TSLLVKEGASLNV-----------------------------------DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR  242 (329)
Q Consensus       198 v~~Ll~~~~~~~~-----------------------------------~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~  242 (329)
                      +++|++.+.+...                                   ..+.++++.|+..++.+++++|++.|++++..
T Consensus        82 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~  161 (408)
T d1n11a_          82 VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAA  161 (408)
T ss_dssp             HHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcC
Confidence            9999876544221                                   22457899999999999999999999999999


Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020239          243 DYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQ  305 (329)
Q Consensus       243 ~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~  305 (329)
                      +.+|.+|||+|+..|+.+++++|+++|++++..+..|.||++.+....+.++..+|+..+...
T Consensus       162 ~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~  224 (408)
T d1n11a_         162 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA  224 (408)
T ss_dssp             CSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccc
Confidence            999999999999999999999999999999988888888888888888888888877765543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=5.3e-29  Score=202.77  Aligned_cols=187  Identities=27%  Similarity=0.357  Sum_probs=170.2

Q ss_pred             cchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCC-CccccCCCCCcHHHHHH
Q 020239          112 HEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGV-DINIKDKFGNTPLLEAI  190 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~l~~A~  190 (329)
                      .+..+.||||+|+..|+.+++++|++.|++++.++..+.++++.++..++............ ........+.++.+.+.
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA   98 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            35677899999999999999999999999999999999999999999999888777766533 33344556889999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHC
Q 020239          191 KCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA  268 (329)
Q Consensus       191 ~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~  268 (329)
                      ........+.|.+.+.+++..+  +.|+++.++.++..++++.+++.+.+++..|..|.||||+|+..|+.+++++|+++
T Consensus        99 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  178 (209)
T d1ot8a_          99 RLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDN  178 (209)
T ss_dssp             HTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHC
Confidence            9999999999999998887654  56999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCcHHHHHHHcCCHHHHHHH
Q 020239          269 GASVFTKDRWGNTPLDEGRMCGNKNLIKLL  298 (329)
Q Consensus       269 g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L  298 (329)
                      |++++.+|..|+||||+|+++|+.++|++|
T Consensus       179 gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         179 FANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999999999999987

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-29  Score=196.97  Aligned_cols=153  Identities=27%  Similarity=0.422  Sum_probs=108.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHH
Q 020239          118 LRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  197 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  197 (329)
                      ++||.|+..|+.++|++|+++|++++.+|..|.||||+|+ .|+.+++++|+++|++++..+..+.++++.++..+..+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            5666666666666666666666666666666666666554 566666666666666666666666666665555555544


Q ss_pred             HHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCC-CccCCC
Q 020239          198 TSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGA-SVFTKD  276 (329)
Q Consensus       198 v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~-~~~~~~  276 (329)
                      +                               +.|++.+.+++..+..|.+|+|+|+..++.+++++|+++|+ +.+.+|
T Consensus        82 ~-------------------------------~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d  130 (156)
T d1ihba_          82 L-------------------------------QTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN  130 (156)
T ss_dssp             H-------------------------------HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCC
T ss_pred             c-------------------------------cccccccccccccccccccccccccccccccccccccccccccccccC
Confidence            4                               44555555666777778888888888888888888888775 778888


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020239          277 RWGNTPLDEGRMCGNKNLIKLLEDAK  302 (329)
Q Consensus       277 ~~g~t~l~~A~~~~~~~iv~~L~~~~  302 (329)
                      ..|+||||+|+..++.+++++|+++|
T Consensus       131 ~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         131 HKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            88888888888888888888888876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.3e-29  Score=194.06  Aligned_cols=151  Identities=26%  Similarity=0.422  Sum_probs=121.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHH
Q 020239          118 LRFNSAAYHGDLYQLKGLIRA-GADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  196 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  196 (329)
                      .+|+.|+..|+.++|++|++. +.+++.+|..|.||||+|+ .|+.+++++|++++.+++..+..|.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            458888888888888888875 6778888888888888776 47778888888888888877777777777666655555


Q ss_pred             HHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCC
Q 020239          197 VTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKD  276 (329)
Q Consensus       197 ~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~  276 (329)
                      +++++                               ++.|++++.+|..|.||||+|+..|+.+++++|+ .|++++.+|
T Consensus        83 ~~~~~-------------------------------l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d  130 (156)
T d1bd8a_          83 TLKVL-------------------------------VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRD  130 (156)
T ss_dssp             HHHHH-------------------------------HHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCC
T ss_pred             ccccc-------------------------------cccccccccccCCCCeeecccccccccccccccc-ccccccccC
Confidence            55554                               5555566777888999999999999999999877 688999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHc
Q 020239          277 RWGNTPLDEGRMCGNKNLIKLLEDA  301 (329)
Q Consensus       277 ~~g~t~l~~A~~~~~~~iv~~L~~~  301 (329)
                      ..|+||||+|+..|+.+++++|++|
T Consensus       131 ~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         131 ARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999999876

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3e-29  Score=194.82  Aligned_cols=146  Identities=23%  Similarity=0.266  Sum_probs=120.4

Q ss_pred             CCchhhhhhhhccccccccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHh
Q 020239           91 GKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQ  170 (329)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~  170 (329)
                      .++.......++.+..  .+..+..+.||||+|+ .|+.+++++|++.|++++..+..|.++++.++..++.+.+++|++
T Consensus        11 ~g~~~~v~~Ll~~g~d--~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~   87 (156)
T d1ihba_          11 RGDLEQLTSLLQNNVN--VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLE   87 (156)
T ss_dssp             HTCHHHHHHHTTSCCC--TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC--cCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccccccccc
Confidence            3445555555555443  4556778899999886 789999999999999999999999999999999999999999999


Q ss_pred             cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHH
Q 020239          171 KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPL  250 (329)
Q Consensus       171 ~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L  250 (329)
                      ++.+++..+..|.+|+++|+..++.+++++|++++.                              .+.+.+|.+|.|||
T Consensus        88 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~------------------------------~~~~~~d~~g~TpL  137 (156)
T d1ihba_          88 FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA------------------------------SNVGHRNHKGDTAC  137 (156)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC------------------------------CCTTCCCTTSCCHH
T ss_pred             cccccccccccccccccccccccccccccccccccc------------------------------ccccccCCCCCCHH
Confidence            999999999999999998888888888777777643                              24566777788888


Q ss_pred             HHHHHhCcHHHHHHHHHCC
Q 020239          251 HVAASEGLYLMAKLLLEAG  269 (329)
Q Consensus       251 ~~A~~~~~~~iv~~Ll~~g  269 (329)
                      |+|+..++.+++++|+++|
T Consensus       138 ~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         138 DLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHcCCHHHHHHHHhcC
Confidence            8888888888888888876

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.2e-28  Score=189.27  Aligned_cols=147  Identities=28%  Similarity=0.420  Sum_probs=100.2

Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc--CCCCcHHHHHHHcCCHHH
Q 020239          151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNV--DDAGSFLCIAVARGDSDL  228 (329)
Q Consensus       151 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~~l~~A~~~g~~~~  228 (329)
                      ||||.|++.|+.++|++|+++|++++ .|..|.||||+|+..++.++++.++........  ....++++.++...+.+.
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANI   82 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCcccccccccccccccccccccccccccccccccccccccccccccee
Confidence            44444444444444444444444433 234444444444444444444444433222221  123345566666666777


Q ss_pred             HHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHH
Q 020239          229 LKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  298 (329)
Q Consensus       229 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L  298 (329)
                      ++++.+.|++.+.++.+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.|++++|
T Consensus        83 ~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          83 VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            7777777788888999999999999999999999999999999999999999999999999999999987

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.96  E-value=1e-29  Score=215.83  Aligned_cols=207  Identities=22%  Similarity=0.224  Sum_probs=169.1

Q ss_pred             HHHHHHHH-cCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHH--------HhcCCCccccCCCCCcHHHH
Q 020239          118 LRFNSAAY-HGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFL--------IQKGVDINIKDKFGNTPLLE  188 (329)
Q Consensus       118 ~~l~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L--------l~~g~~~~~~~~~g~t~l~~  188 (329)
                      ||||.++. .|+.++++.|.+.+++... +.+|.||||+|+..|+.+++++|        +++|+++|.+|..|.||||+
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~   80 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML   80 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecc
Confidence            45553333 4677777777777766533 24699999999999999888776        56799999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCC------------------------------
Q 020239          189 AIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNG------------------------------  236 (329)
Q Consensus       189 A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g------------------------------  236 (329)
                      |++.|+.+++++|+++|++++..+  +.|++++|+..++.++++++...+                              
T Consensus        81 A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (277)
T d2fo1e1          81 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA  160 (277)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHH
T ss_pred             ccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccc
Confidence            999999999999999999998765  679999999999988888776431                              


Q ss_pred             -----------------CCCCCCCCCCchHHHHHHHhCcHHHHHHHH-HCCCCccCCCCCCCcHHHHHHHcCCHHHHHHH
Q 020239          237 -----------------VDPNSRDYDHRTPLHVAASEGLYLMAKLLL-EAGASVFTKDRWGNTPLDEGRMCGNKNLIKLL  298 (329)
Q Consensus       237 -----------------~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L  298 (329)
                                       ...+..+..|.||||+++..++.+++++++ ..|.+.+.+|..|+||||+|+..|+.++|++|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~L  240 (277)
T d2fo1e1         161 SAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL  240 (277)
T ss_dssp             HHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence                             011334677999999999999999998765 57899999999999999999999999999999


Q ss_pred             HHcCCCCcccc--------ccccchhHHHHHhhhc
Q 020239          299 EDAKCTQLSEF--------HYCSQGMIGIAENLLL  325 (329)
Q Consensus       299 ~~~~~~~~~~~--------~~~~~~~~~~~~~l~~  325 (329)
                      +++|++.....        .++..|+.++|+.|+.
T Consensus       241 l~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         241 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99998653332        2356688999998863

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=1e-27  Score=205.11  Aligned_cols=199  Identities=24%  Similarity=0.266  Sum_probs=166.0

Q ss_pred             CCHHHHHHHHHcCCCCCCC---------CCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHH
Q 020239          127 GDLYQLKGLIRAGADLNKT---------DYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  197 (329)
Q Consensus       127 g~~~~v~~Ll~~~~~~~~~---------~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  197 (329)
                      ...+.++.......+.+..         +..+.|+|+.||..|+.++|++|+++|++++..|..|.||||+|+..|+.++
T Consensus         9 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~ei   88 (291)
T d1s70b_           9 KRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDM   88 (291)
T ss_dssp             HHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCcee
Confidence            3456666666655443321         1235699999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHC-CC----
Q 020239          198 TSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA-GA----  270 (329)
Q Consensus       198 v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~-g~----  270 (329)
                      +++|++++.+....+  +.+||+.++..++.++++.|++.|...+..+..+.+++++|+..+..++++.++.. |.    
T Consensus        89 v~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~  168 (291)
T d1s70b_          89 VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA  168 (291)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHH
T ss_pred             eeeecccccccccccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhcccccccccccccc
Confidence            999999998866654  56999999999999999999999999999999999999999999988888888753 22    


Q ss_pred             ----------------------CccCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc--------cccccchhHHHH
Q 020239          271 ----------------------SVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAKCTQLSE--------FHYCSQGMIGIA  320 (329)
Q Consensus       271 ----------------------~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~~~~~~~--------~~~~~~~~~~~~  320 (329)
                                            +....+..|.|||+.|+..|+.+++++|+++|++.-..        ..++..|+.++|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv  248 (291)
T d1s70b_         169 ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC  248 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHH
Confidence                                  23456778999999999999999999999998854222        134567899999


Q ss_pred             Hhhhc
Q 020239          321 ENLLL  325 (329)
Q Consensus       321 ~~l~~  325 (329)
                      ++|+.
T Consensus       249 ~lLl~  253 (291)
T d1s70b_         249 RILVE  253 (291)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.9e-27  Score=200.63  Aligned_cols=258  Identities=22%  Similarity=0.238  Sum_probs=183.6

Q ss_pred             hHHHhHhCchhhhhHhhhhcccccccchhhhchhhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhh
Q 020239            5 PAVARACGRKEEVRYLLWIRLYPVRKISQTLYMPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYF   84 (329)
Q Consensus         5 ~~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (329)
                      +..|+..|+.++|++|++.|++++......-+.+.   .+.......+.+..+..........       ..........
T Consensus         9 L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL---~~A~~~~~~eiv~~L~~~~~~~~~~-------~~~~~~~~~~   78 (285)
T d1wdya_           9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPL---HNAVQMSREDIVELLLRHGADPVLR-------KKNGATPFLL   78 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHH---HHHHHTTCHHHHHHHHHTTCCTTCC-------CTTCCCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHH---HHHHHcCCHHHhhhhcccccccccc-------ccccchhhHH
Confidence            57899999999999999999998754322221111   0112233455554444322211000       0000011111


Q ss_pred             hhhcccCCchhhhhhhhccccccccCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCChHHH
Q 020239           85 VCHGVLGKESNLRLKQVESDITFHIGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKT----------DYDGRSPLH  154 (329)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~----------~~~g~t~L~  154 (329)
                      .....   ........+..  .......+..+.++++.|+..++...++.++....+++..          +..|.||||
T Consensus        79 ~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  153 (285)
T d1wdya_          79 AAIAG---SVKLLKLFLSK--GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM  153 (285)
T ss_dssp             HHHHT---CHHHHHHHHHT--TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred             HhhcC---Cccccchhhhh--cccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHH
Confidence            11111   11111111111  1112223455668999999999999999999887665433          355899999


Q ss_pred             HHHHcCcHHHHHHHHhc-CCCccccCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHH
Q 020239          155 LATSRGYEDITLFLIQK-GVDINIKDKFGNTPLLEAIKCGH----DGVTSLLVKEGASLNVDD--AGSFLCIAVARGDSD  227 (329)
Q Consensus       155 ~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~  227 (329)
                      +|+..|+.+++++|+++ |++++..+..|.+++..+...+.    .+++++|+++|++++..+  +.||||.|+..|+.+
T Consensus       154 ~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~  233 (285)
T d1wdya_         154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG  233 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHH
Confidence            99999999999999975 89999999999998887765543    469999999999998764  679999999999999


Q ss_pred             HHHHHHH-CCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCC
Q 020239          228 LLKRVLS-NGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR  277 (329)
Q Consensus       228 ~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~  277 (329)
                      ++++|++ .|++++.+|.+|.||||+|++.|+.+++++|+++||++|.+|.
T Consensus       234 ~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             HHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            9999997 4999999999999999999999999999999999999999874

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=3.2e-28  Score=198.11  Aligned_cols=195  Identities=26%  Similarity=0.259  Sum_probs=173.4

Q ss_pred             HHHHHHHHHcCCCCCC-CCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020239          129 LYQLKGLIRAGADLNK-TDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGAS  207 (329)
Q Consensus       129 ~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~  207 (329)
                      .|+|++|+++|+++|. .|.+|.||||+||..|+.+++++|+++|++++.++..+.++++.++..++.............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            5899999999999987 488999999999999999999999999999999999999999999999998877776665333


Q ss_pred             CC---cCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHH
Q 020239          208 LN---VDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLD  284 (329)
Q Consensus       208 ~~---~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~  284 (329)
                      ..   ...+.+..+.+.........+.|.+.+++++.++..|.|||++++..+..++++.+++++.+++.+|..|.||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~  161 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF  161 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccc
Confidence            22   233557888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCccc--------cccccchhHHHHHhh
Q 020239          285 EGRMCGNKNLIKLLEDAKCTQLSE--------FHYCSQGMIGIAENL  323 (329)
Q Consensus       285 ~A~~~~~~~iv~~L~~~~~~~~~~--------~~~~~~~~~~~~~~l  323 (329)
                      +|+..|+.++|++|+++|++....        ..++..|+.+||++|
T Consensus       162 ~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         162 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999865332        224667899999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=1.2e-30  Score=228.88  Aligned_cols=190  Identities=18%  Similarity=0.072  Sum_probs=151.4

Q ss_pred             cchhhhHHHHHHHHcCCHHHHHH---HHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccC--CCCCcHH
Q 020239          112 HEAELALRFNSAAYHGDLYQLKG---LIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKD--KFGNTPL  186 (329)
Q Consensus       112 ~~~~~~~~l~~A~~~g~~~~v~~---Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--~~g~t~l  186 (329)
                      .+..+.|+|+.|+.+|+.+++++   |++.|+++|.++..|.||||+|+.+||.++|++|+++|++++..+  ..|.|||
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L  165 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF  165 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChh
Confidence            44567899999999999988776   678999999999999999999999999999999999999998765  3589999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCc-----CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-------------------
Q 020239          187 LEAIKCGHDGVTSLLVKEGASLNV-----DDAGSFLCIAVARGDSDLLKRVLSNGVDPNSR-------------------  242 (329)
Q Consensus       187 ~~A~~~~~~~~v~~Ll~~~~~~~~-----~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~-------------------  242 (329)
                      |+|+..|+.+++++|++.|++...     .++.++++.|+.+|+.+++++|++.|++++..                   
T Consensus       166 ~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~  245 (346)
T d2ajaa1         166 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARH  245 (346)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHh
Confidence            999999999999999999876532     23457788899999999999999876432110                   


Q ss_pred             --------------CCC----------------CchHHHHHHHhCcHHHHHHHHHCCCC-----ccCCCCCCCcHHHHHH
Q 020239          243 --------------DYD----------------HRTPLHVAASEGLYLMAKLLLEAGAS-----VFTKDRWGNTPLDEGR  287 (329)
Q Consensus       243 --------------~~~----------------g~t~L~~A~~~~~~~iv~~Ll~~g~~-----~~~~~~~g~t~l~~A~  287 (329)
                                    ...                +.++++.|+..+..+++++|++.+..     .+..+..|+||||+|+
T Consensus       246 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~  325 (346)
T d2ajaa1         246 VNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL  325 (346)
T ss_dssp             HHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHH
T ss_pred             hccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHH
Confidence                          011                23567777778888999999987653     2344457889999999


Q ss_pred             HcCCHHHHHHHHHc
Q 020239          288 MCGNKNLIKLLEDA  301 (329)
Q Consensus       288 ~~~~~~iv~~L~~~  301 (329)
                      +.|+.++|++|++.
T Consensus       326 ~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         326 RLGNQGACALLLSI  339 (346)
T ss_dssp             HHTCTTHHHHHTTS
T ss_pred             HcCcHHHHHHHhCC
Confidence            99999999999864

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=4.6e-27  Score=181.68  Aligned_cols=149  Identities=28%  Similarity=0.410  Sum_probs=139.7

Q ss_pred             hhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCH
Q 020239          116 LALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHD  195 (329)
Q Consensus       116 ~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  195 (329)
                      ..|||+.|++.|+.++|++|+++|++++ .+..|.||||+|+..++.++++.++.........+..+.++++.++...+.
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3599999999999999999999999887 689999999999999999999999999888777888889999999999999


Q ss_pred             HHHHHHHHcCCCCCcCC--CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHH
Q 020239          196 GVTSLLVKEGASLNVDD--AGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLL  265 (329)
Q Consensus       196 ~~v~~Ll~~~~~~~~~~--~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~L  265 (329)
                      +.++++.+.+.+.+..+  +.||||+|+..|+.+++++|++.|++++.+|.+|.||||+|+..|+.+++++|
T Consensus        81 ~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999998887654  67999999999999999999999999999999999999999999999999976

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=190.31  Aligned_cols=163  Identities=24%  Similarity=0.265  Sum_probs=148.6

Q ss_pred             cCccchhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCc------cccCCCC
Q 020239          109 IGKHEAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDI------NIKDKFG  182 (329)
Q Consensus       109 ~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~g  182 (329)
                      ++..+..+.||||+|+..|+.+++++|++.|++++.+|..|.|||+.|+..++.++++.|++.+...      ......|
T Consensus        32 in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  111 (221)
T d1iknd_          32 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG  111 (221)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTC
T ss_pred             cccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc
Confidence            3456778889999999999999999999999999999999999999999999999999999986543      2334568


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCcC---CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcH
Q 020239          183 NTPLLEAIKCGHDGVTSLLVKEGASLNVD---DAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLY  259 (329)
Q Consensus       183 ~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~---~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  259 (329)
                      .||++.|+..++.+.+++|++.+..++..   .+.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..++.
T Consensus       112 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~  191 (221)
T d1iknd_         112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPST  191 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCH
T ss_pred             chhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCH
Confidence            99999999999999999999999888754   367999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCC
Q 020239          260 LMAKLLLEAGAS  271 (329)
Q Consensus       260 ~iv~~Ll~~g~~  271 (329)
                      +++++|++.+.+
T Consensus       192 ~~~~~l~~~~~~  203 (221)
T d1iknd_         192 RIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHTTSCG
T ss_pred             HHHHHHHHcCCc
Confidence            999999998754

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.4e-26  Score=172.56  Aligned_cols=120  Identities=27%  Similarity=0.453  Sum_probs=87.9

Q ss_pred             CChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHH
Q 020239          149 GRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDL  228 (329)
Q Consensus       149 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~  228 (329)
                      +.++||+|+..|+.+++++|+++|++++.++..|.||+|.|+ .|+.                               ++
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~-------------------------------~~   50 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSA-------------------------------RV   50 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCH-------------------------------HH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccc-------------------------------cc
Confidence            346777777777777777777777777777777777766443 3444                               44


Q ss_pred             HHHHHHCCCCCCCCCCCCc-hHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 020239          229 LKRVLSNGVDPNSRDYDHR-TPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLED  300 (329)
Q Consensus       229 v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~  300 (329)
                      +++|+++|++++.++..|. ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+.+++++|++
T Consensus        51 v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          51 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            4444555555666666555 58888888888888888888888888888888888888888888888888864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-24  Score=176.78  Aligned_cols=180  Identities=26%  Similarity=0.358  Sum_probs=152.4

Q ss_pred             CCCChHHHHHHHcCcHHHHHHHHh----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC--CCcHHHHH
Q 020239          147 YDGRSPLHLATSRGYEDITLFLIQ----KGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDD--AGSFLCIA  220 (329)
Q Consensus       147 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~--~~~~l~~A  220 (329)
                      .+|.||||+||..|+.+++++|++    .|++++.+|..|.||||+|+..|+.+++++|+++|++.+...  +.++++.|
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            369999999999999999998875    799999999999999999999999999999999998887654  56899999


Q ss_pred             HHcCCHHHHHHHHHCC----CCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCcc-CCCCCCCcHHHHHHHcCCHHHH
Q 020239          221 VARGDSDLLKRVLSNG----VDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVF-TKDRWGNTPLDEGRMCGNKNLI  295 (329)
Q Consensus       221 ~~~g~~~~v~~Ll~~g----~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~iv  295 (329)
                      ...++.++++.+....    ...+.......++|+.+.........+.|.....+.. .....|.+|++.|+..+..+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            9999999999887642    2345556777899999999999999999998776654 4566789999999999999999


Q ss_pred             HHHHHcCCCCccc--------cccccchhHHHHHhhhcC
Q 020239          296 KLLEDAKCTQLSE--------FHYCSQGMIGIAENLLLL  326 (329)
Q Consensus       296 ~~L~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~  326 (329)
                      +++++.+......        ..++..|+.+++++|+..
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  199 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS  199 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHC
Confidence            9999988754433        223566899999999853

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=8.9e-26  Score=194.10  Aligned_cols=170  Identities=21%  Similarity=0.193  Sum_probs=122.4

Q ss_pred             chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcH-------HHHHHHHhcCCCccccCCCCCcH
Q 020239          113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYE-------DITLFLIQKGVDINIKDKFGNTP  185 (329)
Q Consensus       113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~-------~~v~~Ll~~g~~~~~~~~~g~t~  185 (329)
                      |..+.||||+|+..|+.++|++|++.|++++.+|..|.||||.|+..++.       ++++++.+   .+..+|..|+||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d~~g~t~  180 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILEDSMNRTI  180 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEECTTCCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhcccccCCH
Confidence            67788999999999999999999999999999999999999999987752       44555443   466778889999


Q ss_pred             HHHHHHcCC----HH--------HHHHHHHcCCCCCcC---CCCcHHHHHHHcCCHHHH-----HHHHHCCCCCCCCCCC
Q 020239          186 LLEAIKCGH----DG--------VTSLLVKEGASLNVD---DAGSFLCIAVARGDSDLL-----KRVLSNGVDPNSRDYD  245 (329)
Q Consensus       186 l~~A~~~~~----~~--------~v~~Ll~~~~~~~~~---~~~~~l~~A~~~g~~~~v-----~~Ll~~g~~~~~~~~~  245 (329)
                      ||+++..+.    ..        ++.++.+.+......   ...++++.+........+     ..++.  ..+|.+|.+
T Consensus       181 lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~in~~D~~  258 (301)
T d1sw6a_         181 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA--NMLNAQDSN  258 (301)
T ss_dssp             HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH--HTTTCCCTT
T ss_pred             HHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHh--cCccCCCCC
Confidence            998886554    22        334444443332221   122333333333322222     22232  237889999


Q ss_pred             CchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHH
Q 020239          246 HRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR  287 (329)
Q Consensus       246 g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~  287 (329)
                      |+||||+|++.|+.++|++|+++|++++.+|..|+|||++|+
T Consensus       259 G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         259 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            999999999999999999999999999999999999999985

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=6e-29  Score=218.07  Aligned_cols=183  Identities=13%  Similarity=0.011  Sum_probs=145.5

Q ss_pred             CCCCCChHHHHHHHcCcHHHHHH---HHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcC----CCCcHH
Q 020239          145 TDYDGRSPLHLATSRGYEDITLF---LIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVD----DAGSFL  217 (329)
Q Consensus       145 ~~~~g~t~L~~A~~~g~~~~v~~---Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~----~~~~~l  217 (329)
                      ++..|.||||+|+++|+.+++++   |++.|++++.++..|.||||+|++.|+.++|++|++.|++++..    ++.|||
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L  165 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF  165 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChh
Confidence            45678999999999999887766   78899999999999999999999999999999999999998764    367999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCC---CCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCC-------------------
Q 020239          218 CIAVARGDSDLLKRVLSNGVDPN---SRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTK-------------------  275 (329)
Q Consensus       218 ~~A~~~g~~~~v~~Ll~~g~~~~---~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~-------------------  275 (329)
                      |+|+..|+.++|++|++.|++..   ..+..|.||++.|+..|+.+++++|+++|++++..                   
T Consensus       166 ~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~  245 (346)
T d2ajaa1         166 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARH  245 (346)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHh
Confidence            99999999999999999987653   33455678888999999999999999887543211                   


Q ss_pred             --------------CCC----------------CCcHHHHHHHcCCHHHHHHHHHcCCCCcc-------------ccccc
Q 020239          276 --------------DRW----------------GNTPLDEGRMCGNKNLIKLLEDAKCTQLS-------------EFHYC  312 (329)
Q Consensus       276 --------------~~~----------------g~t~l~~A~~~~~~~iv~~L~~~~~~~~~-------------~~~~~  312 (329)
                                    ...                +.++++.|+..++.+++++|++.+.....             -..++
T Consensus       246 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~  325 (346)
T d2ajaa1         246 VNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL  325 (346)
T ss_dssp             HHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHH
T ss_pred             hccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHH
Confidence                          011                12567778888899999999987653211             12356


Q ss_pred             cchhHHHHHhhhcCC
Q 020239          313 SQGMIGIAENLLLLP  327 (329)
Q Consensus       313 ~~~~~~~~~~l~~~~  327 (329)
                      ..|+.++|++||++|
T Consensus       326 ~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         326 RLGNQGACALLLSIP  340 (346)
T ss_dssp             HHTCTTHHHHHTTSH
T ss_pred             HcCcHHHHHHHhCCC
Confidence            779999999999987

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.5e-26  Score=168.05  Aligned_cols=119  Identities=25%  Similarity=0.343  Sum_probs=99.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCC-cHHHHHHHcCCH
Q 020239          117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGN-TPLLEAIKCGHD  195 (329)
Q Consensus       117 ~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~  195 (329)
                      .++||.|+..|+.++|++|+++|++++.++..|.||+|.|+ .|+.+++++|+++|++++..+..+. +|||+|++.|+.
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~   82 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFL   82 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            47899999999999999999999999999999999999775 7999999999999999998887754 577777766665


Q ss_pred             HHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHH
Q 020239          196 GVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE  267 (329)
Q Consensus       196 ~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  267 (329)
                      +++++|++                               +|++++.+|..|+||||+|+..|+.+++++|++
T Consensus        83 ~~v~~Ll~-------------------------------~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          83 DTLVVLHR-------------------------------AGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHH-------------------------------HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccc-------------------------------cccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            55555554                               455666777888888888888888888888864

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=5.7e-26  Score=167.44  Aligned_cols=106  Identities=33%  Similarity=0.343  Sum_probs=84.4

Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHH
Q 020239          151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLK  230 (329)
Q Consensus       151 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~  230 (329)
                      |||++|++.|+.+++++|+++|++++.++..|.||||+|+..|+.++++                               
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~-------------------------------   52 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILE-------------------------------   52 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHH-------------------------------
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhcccccccccccccccccccccccccc-------------------------------
Confidence            6777777777777777777777777777777777777766665555555                               


Q ss_pred             HHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHH
Q 020239          231 RVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGR  287 (329)
Q Consensus       231 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~  287 (329)
                      +|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|.
T Consensus        53 ~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          53 FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             ccccccceeeecccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            445556667778888999999999999999999999999999999999999999873

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-24  Score=163.15  Aligned_cols=121  Identities=30%  Similarity=0.312  Sum_probs=89.4

Q ss_pred             hHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHH
Q 020239          151 SPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLK  230 (329)
Q Consensus       151 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~  230 (329)
                      ++|+.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+                            
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll----------------------------   54 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV----------------------------   54 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHH----------------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccc----------------------------
Confidence            5677777777777777777777777777777777776666655555555444                            


Q ss_pred             HHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCC-CCCcHHHHH--HHcCCHHHHHHHHHcC
Q 020239          231 RVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDR-WGNTPLDEG--RMCGNKNLIKLLEDAK  302 (329)
Q Consensus       231 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~-~g~t~l~~A--~~~~~~~iv~~L~~~~  302 (329)
                         +.|++++.+|.+|+||||+|+..|+.+++++|+++|++++..+. .|+||++++  ...|+.+++++|++.+
T Consensus        55 ---~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          55 ---QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             ---HHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             ---ccccccccccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence               44556667788888899999999999999999999988887664 477877665  5678888999887653

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.1e-23  Score=161.91  Aligned_cols=86  Identities=22%  Similarity=0.238  Sum_probs=77.6

Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHCCCCccCCCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020239          223 RGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEAGASVFTKDRWGNTPLDEGRMCGNKNLIKLLEDAK  302 (329)
Q Consensus       223 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~iv~~L~~~~  302 (329)
                      .+..+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.+
T Consensus        58 ~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1          58 RTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             TTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            35667778888888888999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCccc
Q 020239          303 CTQLSE  308 (329)
Q Consensus       303 ~~~~~~  308 (329)
                      ......
T Consensus       138 ~~~~~~  143 (154)
T d1dcqa1         138 SGRFNS  143 (154)
T ss_dssp             TTCCCS
T ss_pred             CCCCCc
Confidence            776655

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.4e-24  Score=159.48  Aligned_cols=117  Identities=24%  Similarity=0.308  Sum_probs=99.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHHH
Q 020239          118 LRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDGV  197 (329)
Q Consensus       118 ~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  197 (329)
                      +.|+.|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCcCC---CCcHHHHH--HHcCCHHHHHHHHH
Q 020239          198 TSLLVKEGASLNVDD---AGSFLCIA--VARGDSDLLKRVLS  234 (329)
Q Consensus       198 v~~Ll~~~~~~~~~~---~~~~l~~A--~~~g~~~~v~~Ll~  234 (329)
                      +++|+++|++++..+   +.|+++++  +..|+.+++++|++
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            988888888776432   34444332  34455555555553

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.8e-23  Score=160.76  Aligned_cols=123  Identities=28%  Similarity=0.387  Sum_probs=104.5

Q ss_pred             chhhhHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHc
Q 020239          113 EAELALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKC  192 (329)
Q Consensus       113 ~~~~~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~  192 (329)
                      +..+.||||+|+ .|+.+++++|++++.+++..+..|.+|++.++..++.+++++++++|++++.+|..|.||||+|++.
T Consensus        33 d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~  111 (156)
T d1bd8a_          33 NRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQE  111 (156)
T ss_dssp             CTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred             CCCCCccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeeecccccc
Confidence            345568999887 4899999999999999999999999999999999999999999999999999999899999888887


Q ss_pred             CCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHC
Q 020239          193 GHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLEA  268 (329)
Q Consensus       193 ~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~  268 (329)
                      |+.+++++|+ .                               |++++.+|.+|+||||+|+..|+.+++++|+++
T Consensus       112 ~~~~i~~~L~-~-------------------------------~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         112 GHTAVVSFLA-A-------------------------------ESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TCHHHHHHHH-T-------------------------------TSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccc-c-------------------------------cccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            7777777665 2                               345666777788888888888888888888765

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=3.8e-25  Score=162.94  Aligned_cols=93  Identities=41%  Similarity=0.561  Sum_probs=83.3

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCChHHHHHHHcCcHHHHHHHHhcCCCccccCCCCCcHHHHHHHcCCHH
Q 020239          117 ALRFNSAAYHGDLYQLKGLIRAGADLNKTDYDGRSPLHLATSRGYEDITLFLIQKGVDINIKDKFGNTPLLEAIKCGHDG  196 (329)
Q Consensus       117 ~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  196 (329)
                      .|||++|++.|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999888877777


Q ss_pred             HHHHHHHcCCCCC
Q 020239          197 VTSLLVKEGASLN  209 (329)
Q Consensus       197 ~v~~Ll~~~~~~~  209 (329)
                      ++++|+++|++++
T Consensus        83 ~v~~Ll~~Gad~~   95 (118)
T d1myoa_          83 CVKLLLSKGADKT   95 (118)
T ss_dssp             HHHHHHTTCCCSS
T ss_pred             hhhhhhcccccce
Confidence            6666666554443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.5e-22  Score=154.33  Aligned_cols=124  Identities=21%  Similarity=0.209  Sum_probs=98.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCCC------CCCCChHHHHHHHc---CcHHHHHHHHhcCCCccccCCCCCcHHH
Q 020239          117 ALRFNSAAYHGDLYQLKGLIRAGADLNKT------DYDGRSPLHLATSR---GYEDITLFLIQKGVDINIKDKFGNTPLL  187 (329)
Q Consensus       117 ~~~l~~A~~~g~~~~v~~Ll~~~~~~~~~------~~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t~l~  187 (329)
                      ...|+.|++.+++..+..++..|.+++..      +..|.||||+|+..   ++.+++++|+++|++++.+|..|.||||
T Consensus         7 l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh   86 (154)
T d1dcqa1           7 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccc
Confidence            35688999999999999999988886644      56788999999874   5788899999999888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCchHHHHHHHhCcHHHHHHHHH
Q 020239          188 EAIKCGHDGVTSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNSRDYDHRTPLHVAASEGLYLMAKLLLE  267 (329)
Q Consensus       188 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~  267 (329)
                      +|+..|+.+++++|+                               ++|++++.+|..|.||||+|++.|+.+++++|++
T Consensus        87 ~A~~~~~~~~v~~Ll-------------------------------~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~  135 (154)
T d1dcqa1          87 YCCLTDNAECLKLLL-------------------------------RGKASIEIANESGETPLDIAKRLKHEHCEELLTQ  135 (154)
T ss_dssp             HHHHTTCHHHHHHHH-------------------------------HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccccccccccccc-------------------------------ccCccccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            777766655555555                               4555667778888888888888888888888888


Q ss_pred             CCCC
Q 020239          268 AGAS  271 (329)
Q Consensus       268 ~g~~  271 (329)
                      .++.
T Consensus       136 ~~~~  139 (154)
T d1dcqa1         136 ALSG  139 (154)
T ss_dssp             HHTT
T ss_pred             hCCC
Confidence            6653

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3.2e-22  Score=171.67  Aligned_cols=145  Identities=14%  Similarity=0.071  Sum_probs=92.7

Q ss_pred             cccCccchhhhHHHHHHHHcCCH-------HHHHHHHHcCCCCCCCCCCCChHHHHHHHcCc----HH--------HHHH
Q 020239          107 FHIGKHEAELALRFNSAAYHGDL-------YQLKGLIRAGADLNKTDYDGRSPLHLATSRGY----ED--------ITLF  167 (329)
Q Consensus       107 ~~~~~~~~~~~~~l~~A~~~g~~-------~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~----~~--------~v~~  167 (329)
                      ......+..+.||||.|+..++.       ++++++.   ..++.+|..|+||||.++..+.    ..        ++.+
T Consensus       131 ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~  207 (301)
T d1sw6a_         131 SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW  207 (301)
T ss_dssp             CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred             CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHH
Confidence            34455677889999999987652       3444443   3455678889999999887543    22        3345


Q ss_pred             HHhcCCC-ccccCCCCCcHHHHHHHcCCHHH-----HHHHHHcCCCCCcCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q 020239          168 LIQKGVD-INIKDKFGNTPLLEAIKCGHDGV-----TSLLVKEGASLNVDDAGSFLCIAVARGDSDLLKRVLSNGVDPNS  241 (329)
Q Consensus       168 Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~-----v~~Ll~~~~~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~  241 (329)
                      +.+.+.. .......+.++++.+........     ..+++....+....+|+||||+|++.|+.++|++|+++|++++.
T Consensus       208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~  287 (301)
T d1sw6a_         208 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI  287 (301)
T ss_dssp             HHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTC
T ss_pred             HHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            5555433 33334445555555544444332     23344445555556688999999999999999999999999999


Q ss_pred             CCCCCchHHHHHH
Q 020239          242 RDYDHRTPLHVAA  254 (329)
Q Consensus       242 ~~~~g~t~L~~A~  254 (329)
                      +|..|.|||++|+
T Consensus       288 ~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         288 ANKSGLRPVDFGA  300 (301)
T ss_dssp             CCTTSCCGGGGTC
T ss_pred             CCCCCCCHHHHcC
Confidence            9999999999985

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.73  E-value=0.072  Score=37.57  Aligned_cols=54  Identities=20%  Similarity=0.488  Sum_probs=48.6

Q ss_pred             hhhhhhcccccccHHHHHHHHHHhhhcccCchhHHHhcCCccchhhhhhhcccC
Q 020239           38 PYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGNVIDQLYFVCHGVLG   91 (329)
Q Consensus        38 ~~~~~~~l~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (329)
                      +.++.+++|.+++++.+..+...+....+.+++.++.+|...+.+|++..+.+.
T Consensus         6 s~l~~vp~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~ly~i~~G~v~   59 (137)
T d1wgpa_           6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLE   59 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCE
T ss_pred             HHHHCCHhHhCCCHHHHHHHHHhcEEEEECCCCEEEecccccceeehhccCceE
Confidence            445678899999999999999999999999999999999999999999987663