Citrus Sinensis ID: 020257

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MTFGLMILIWISNAIFRFLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSELSSSQQTGACSNHF
cccccEEEEEEccccccccccEEEEEEEEEEEEcccEEEEcccccccccccccccccccccEEEEEEEccEEEEcEEEEccccEEEEEEEEEcEEEEEEEEEccccccccccccccccccEEEEccEEEccccEEEEcccccccccccccccccEEEEEEEEccccEEEEEcccccccEEEEEEEEEEEEccccEEEEEEcccccEEEEEEEEEEEEEccccEEEEEEcEEccccccccccccccEEEcEEEEEEEEEcccEEEEEEEcccccEEcEEEEEEEEEEEcccccccEEEEEEEEEEcccccccccccccccccccccccc
ccccccccccccccccccEEEEEEccccEEEEEccccEEcccccHHHHHHccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEcccEEEEEEEEEEccccccccccEEEEccEEEEEEccEEEcccccEEEEEccHHccEEEccccccEEEEEEEEEccccEEEEEccccccEEEEEEEEEEEEEcccEEEEEEccccccEEEEEEEEEEEEEcEEEEEEEEccccccccccccccccEEEEEEEEEEEEEccccccEEEEcccccccccEEEEEEEEEEccccccccccEcccEEEEcccccccHHHcccccccccccccc
MTFGLMILIWISNAIFRFLSDFLISKFEKisfigengtidgqgaIWWNMWrqrtlpftrpnliefmNSRSIIISnvifqnspfwnihpvycsNVVIRYVTIlapadspntdgidpdsssnvciedsyistgddlVAVKSgwdeygiayghpssgitirrvtgsspfsgiavgsetsggVENVLAEHINLynvgvgihvktnigrggfirniTVSDVYMENARKGIKiagdvgdhpddkfnpnalpvvngitikdvwgtkvqqsgliqglknspftgiclsninlqgvagptspplkcsdvsgsayqvkpwpcselsssqqtgacsnhf
MTFGLMILIWISNAIFRFLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPAdspntdgidpDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKtnigrggfirNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSelsssqqtgacsnhf
MTFGLMILIWISNAIFRFLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSELSSSQQTGACSNHF
**FGLMILIWISNAIFRFLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAP****************VCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAG***************************************
MTFGLMILIWISNAIFRFLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPC*************NHF
MTFGLMILIWISNAIFRFLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPW******************
**F*LMILIWISNAIFRFLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSELS************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MTFGLMILIWISNAIFRFLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSELSSSQQTGACSNHF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query328 2.2.26 [Sep-21-2011]
A7PZL3491 Probable polygalacturonas no no 0.948 0.633 0.461 1e-77
Q8RY29433 Polygalacturonase ADPG2 O no no 0.731 0.554 0.314 1e-22
Q9LW07456 Probable polygalacturonas no no 0.804 0.578 0.301 1e-21
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.823 0.525 0.301 6e-21
P27644312 Polygalacturonase OS=Rhiz yes no 0.597 0.628 0.333 8e-21
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.768 0.574 0.286 2e-19
Q02096462 Polygalacturonase OS=Pers N/A no 0.798 0.567 0.270 9e-19
Q9FY19507 Polygalacturonase OS=Juni N/A no 0.835 0.540 0.301 1e-18
P43212514 Polygalacturonase OS=Cryp N/A no 0.893 0.570 0.295 6e-18
O23147431 Polygalacturonase ADPG1 O no no 0.731 0.556 0.272 9e-17
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1 Back     alignment and function desciption
 Score =  290 bits (742), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 145/314 (46%), Positives = 197/314 (62%), Gaps = 3/314 (0%)

Query: 14  AIFRFLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIII 73
           A  R+ S    +    +   G+NGTIDGQG +WW  +    L +TRP LIE M S  I I
Sbjct: 153 AAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQI 212

Query: 74  SNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDD 133
           SN+   NSP WN+HPVY  N++I+ +TILAP  SPNTDGI+PDS +N  IED YI +GDD
Sbjct: 213 SNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDD 272

Query: 134 LVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSG-IAVGSETSGGVENVLAEHINLYNV 192
            VAVKSGWDEYGIAYG P+  + IRR+T  SP+S  IA+GSE SGG+++V AE I   N 
Sbjct: 273 CVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINS 332

Query: 193 GVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITI 252
             GI +KT IGRGG++++I V  + M+  +    + G+ G H D+ ++P A PV+ GI  
Sbjct: 333 ESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINY 392

Query: 253 KDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPC 312
           +D+    V  +  ++G+ + PFTGIC+SN+ +   A     P  C+DV G +  V P PC
Sbjct: 393 RDMVAENVSMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPC 452

Query: 313 SELSSS--QQTGAC 324
           S L     ++T  C
Sbjct: 453 STLPDQGPEKTSLC 466

Vitis vinifera (taxid: 29760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 Back     alignment and function description
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|P27644|PGLR_RHIRD Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query328
224075086412 predicted protein [Populus trichocarpa] 0.920 0.733 0.834 1e-146
255537765 446 Polygalacturonase precursor, putative [R 0.917 0.674 0.820 1e-143
356554060 446 PREDICTED: probable polygalacturonase-li 0.911 0.670 0.806 1e-142
356524183 474 PREDICTED: probable polygalacturonase-li 0.939 0.649 0.776 1e-140
356567484 442 PREDICTED: probable polygalacturonase-li 0.939 0.696 0.779 1e-140
297742322 447 unnamed protein product [Vitis vinifera] 0.945 0.693 0.780 1e-139
357494037 450 Glycoside hydrolase family 28 protein [M 0.917 0.668 0.763 1e-135
449452247 445 PREDICTED: probable polygalacturonase-li 0.917 0.676 0.740 1e-131
15236625 444 glycoside hydrolase family 28 protein / 0.948 0.700 0.695 1e-126
297799608 444 glycoside hydrolase family 28 protein [A 0.948 0.700 0.692 1e-126
>gi|224075086|ref|XP_002304552.1| predicted protein [Populus trichocarpa] gi|222841984|gb|EEE79531.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 252/302 (83%), Positives = 271/302 (89%)

Query: 27  FEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNI 86
            + +   GENGTIDGQG +WWNMWRQRTL FTRPNL+EF+NSR IIISNVIF+NSPFWNI
Sbjct: 111 LQDVIITGENGTIDGQGDVWWNMWRQRTLLFTRPNLVEFVNSRGIIISNVIFRNSPFWNI 170

Query: 87  HPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGI 146
           HPVY  NVVIRYVTILAP DSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGI
Sbjct: 171 HPVYSRNVVIRYVTILAPLDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGI 230

Query: 147 AYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGG 206
           AYG PSS ITIRR+TGSSPFSGIAVGSETSGGV+NVL E++NLYN+GVGIH+KTNIGRGG
Sbjct: 231 AYGRPSSDITIRRITGSSPFSGIAVGSETSGGVKNVLVENVNLYNMGVGIHIKTNIGRGG 290

Query: 207 FIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLI 266
           FI+NITV+DVYMEN RKGIKIAGDVGDHPDD FNPNALPVV GIT+K +WG KVQQ G I
Sbjct: 291 FIKNITVTDVYMENVRKGIKIAGDVGDHPDDSFNPNALPVVYGITLKSIWGEKVQQPGSI 350

Query: 267 QGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSELSSSQQTGACSN 326
           QGLKNSPFTGICLSNINL GV GP S P KCSDVSGSA  V PWPCSEL+S  QTG+CS+
Sbjct: 351 QGLKNSPFTGICLSNINLHGVPGPRSSPWKCSDVSGSALLVSPWPCSELTSPHQTGSCSD 410

Query: 327 HF 328
           HF
Sbjct: 411 HF 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537765|ref|XP_002509949.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223549848|gb|EEF51336.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356554060|ref|XP_003545367.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|356524183|ref|XP_003530711.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|356567484|ref|XP_003551949.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|297742322|emb|CBI34471.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357494037|ref|XP_003617307.1| Glycoside hydrolase family 28 protein [Medicago truncatula] gi|355518642|gb|AET00266.1| Glycoside hydrolase family 28 protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|449452247|ref|XP_004143871.1| PREDICTED: probable polygalacturonase-like [Cucumis sativus] gi|449501789|ref|XP_004161459.1| PREDICTED: probable polygalacturonase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15236625|ref|NP_194113.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gi|4454051|emb|CAA23048.1| putative polygalacturonase [Arabidopsis thaliana] gi|7269231|emb|CAB81300.1| putative polygalacturonase [Arabidopsis thaliana] gi|17065242|gb|AAL32775.1| putative polygalacturonase [Arabidopsis thaliana] gi|22136230|gb|AAM91193.1| putative polygalacturonase [Arabidopsis thaliana] gi|332659410|gb|AEE84810.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297799608|ref|XP_002867688.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata] gi|297313524|gb|EFH43947.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query328
TAIR|locus:2128524444 AT4G23820 [Arabidopsis thalian 0.948 0.700 0.695 5.1e-122
TAIR|locus:2152980449 AT5G41870 [Arabidopsis thalian 0.939 0.685 0.672 1.9e-115
TAIR|locus:2098038471 AT3G62110 [Arabidopsis thalian 0.868 0.605 0.515 1.7e-82
TAIR|locus:2119156475 AT4G33440 [Arabidopsis thalian 0.884 0.610 0.517 1.6e-79
TAIR|locus:2082787476 AT3G61490 [Arabidopsis thalian 0.923 0.636 0.457 1.8e-71
TAIR|locus:2117964495 AT4G23500 [Arabidopsis thalian 0.923 0.612 0.473 9.9e-71
TAIR|locus:2086740455 AT3G16850 [Arabidopsis thalian 0.859 0.619 0.486 1.4e-69
TAIR|locus:2101313469 AT3G48950 [Arabidopsis thalian 0.911 0.637 0.436 3.8e-69
TAIR|locus:2061396477 AT2G23900 [Arabidopsis thalian 0.859 0.591 0.461 2.2e-66
TAIR|locus:2202170506 AT1G19170 [Arabidopsis thalian 0.890 0.577 0.425 6.9e-63
TAIR|locus:2128524 AT4G23820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
 Identities = 217/312 (69%), Positives = 258/312 (82%)

Query:    17 RFLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNV 76
             R++S         +   G+NGTIDGQG +WWNMWR RTL +TRPNLIEF +S+ IIISNV
Sbjct:   134 RYMSFIHGDGLRDVVITGQNGTIDGQGEVWWNMWRSRTLKYTRPNLIEFKDSKEIIISNV 193

Query:    77 IFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVA 136
             IFQNSPFWNIHPVYCSNVVI +VTILAP DSPNTDGIDPDSS NVCIEDSYISTGDDLVA
Sbjct:   194 IFQNSPFWNIHPVYCSNVVIHHVTILAPQDSPNTDGIDPDSSYNVCIEDSYISTGDDLVA 253

Query:   137 VKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGI 196
             +KSGWD+YGIAYG PSS ITIRR+TGSSPF+GIA+GSETSGG++N++AEHI L N+GVG+
Sbjct:   254 IKSGWDQYGIAYGRPSSNITIRRITGSSPFAGIAIGSETSGGIKNIIAEHITLSNMGVGV 313

Query:   197 HVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVW 256
             ++KTNIGRGG+I+NI +SDVY++ A+ GIKIAGD GDHPD+ +NPNALPVV GI IK+VW
Sbjct:   314 NIKTNIGRGGYIKNIKISDVYVDTAKYGIKIAGDTGDHPDENYNPNALPVVKGIHIKNVW 373

Query:   257 GTKVQQSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAYQVKPWPCSELS 316
             G  V+ +G IQGLK SPFTGICLS INL G    +    KCSDVSG++ +V PWPCSEL 
Sbjct:   374 GVNVRNAGSIQGLKGSPFTGICLSEINLHGSLN-SYKTWKCSDVSGTSLKVSPWPCSELR 432

Query:   317 SSQQTGACSNHF 328
             ++  +  CS+ F
Sbjct:   433 TTGGSNLCSSTF 444
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2152980 AT5G41870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082787 AT3G61490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117964 AT4G23500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086740 AT3G16850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061396 AT2G23900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202170 AT1G19170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_III1156
hypothetical protein (412 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-37
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 3e-34
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 3e-27
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 6e-24
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 2e-23
PLN02155394 PLN02155, PLN02155, polygalacturonase 3e-20
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 4e-20
PLN03010409 PLN03010, PLN03010, polygalacturonase 1e-19
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score =  139 bits (353), Expect = 2e-37
 Identities = 76/197 (38%), Positives = 100/197 (50%), Gaps = 9/197 (4%)

Query: 33  IGENGTIDGQ----GAIWWN--MWRQRTLP--FTRPNLIEFMNSRSIIISNVIFQNSPFW 84
           I   GTIDG     G  W++     +  +     RP  +     R++++  +  +NSP W
Sbjct: 203 IWGKGTIDGNGYKRGDKWFSGLGAVETRIGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLW 262

Query: 85  NIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEY 144
            +HPV C N+  R +TI A     NTDG DP S SNV IE     TGDD +A+KSG    
Sbjct: 263 TVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLD 321

Query: 145 GIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGR 204
           G     PS  I IR    SS   G+ +GSE  GGV+N+  E   + N   G+ +KTN GR
Sbjct: 322 GKKGYGPSRNIVIRNCYFSSGHGGLVLGSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGR 381

Query: 205 GGFIRNITVSDVYMENA 221
           GG +RNI   D  M N 
Sbjct: 382 GGGVRNIVFEDNKMRNV 398

Length = 542
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 328
PLN02793443 Probable polygalacturonase 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03010409 polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
PLN03003456 Probable polygalacturonase At3g15720 99.92
PLN03010409 polygalacturonase 99.91
PLN02218431 polygalacturonase ADPG 99.91
PLN02793443 Probable polygalacturonase 99.91
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.9
PLN02155394 polygalacturonase 99.9
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.89
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.75
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.72
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.18
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.97
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.93
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.75
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.7
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.7
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.6
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.59
smart00656190 Amb_all Amb_all domain. 98.41
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.36
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.29
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.27
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.25
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.25
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.17
smart00656190 Amb_all Amb_all domain. 98.01
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.92
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.66
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.23
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 96.73
PLN02480343 Probable pectinesterase 95.11
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 93.09
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 92.87
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 91.64
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 91.39
PLN02773317 pectinesterase 90.7
PLN02773317 pectinesterase 90.15
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 89.51
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 89.33
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 89.16
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 88.46
PLN02480343 Probable pectinesterase 86.63
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 83.74
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 83.72
PLN02671359 pectinesterase 83.12
PLN02682369 pectinesterase family protein 82.72
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 82.31
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 81.48
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 81.03
PLN02634359 probable pectinesterase 80.55
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 80.19
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=4.9e-59  Score=452.37  Aligned_cols=299  Identities=27%  Similarity=0.372  Sum_probs=260.1

Q ss_pred             ceeeeeeEEeecccCCceeeEEEeccEeeEEEeCCeEEEcCCchhhhhhhcC---CCCCCCCeEEEEEeecceEEEeEEE
Q 020257            2 TFGLMILIWISNAIFRFLSDFLISKFEKISFIGENGTIDGQGAIWWNMWRQR---TLPFTRPNLIEFMNSRSIIISNVIF   78 (328)
Q Consensus         2 ~~~~~~~~w~~~~~~~~~~li~~~~~~nv~I~G~~G~IdG~g~~~w~~~~~~---~~~~~rp~~i~~~~~~nv~i~gi~i   78 (328)
                      .|+.+..+|++..   +++||++.+++||+|+|. |+|||+|+.||+.....   .....||++|.|.+|+|++|+||++
T Consensus       120 ~~~~d~~~w~~~~---~~~~i~~~~~~ni~ItG~-G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl  195 (443)
T PLN02793        120 IAPKDPDVWKGLN---PRKWLYFHGVNHLTVEGG-GTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNV  195 (443)
T ss_pred             EccCChHHccCCC---CceEEEEecCceEEEEec-eEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEE
Confidence            3566777887643   357999999999999999 99999999999753211   1124589999999999999999999


Q ss_pred             eCCCCcEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEE
Q 020257           79 QNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIR  158 (328)
Q Consensus        79 ~n~~~~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~  158 (328)
                      +|||.|++++..|+||+|++++|.++.+.+|+||||+.+|+||+|+||+|+++||||++|++           ++||+|+
T Consensus       196 ~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~-----------s~nI~I~  264 (443)
T PLN02793        196 IDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGN-----------SSRIKIR  264 (443)
T ss_pred             EcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCC-----------cCCEEEE
Confidence            99999999999999999999999998888999999999999999999999999999999984           8999999


Q ss_pred             eEEEeCCCceeEEeecc----cCCEEeEEEEceEEeccceeEEEEEecCCCceEEEEEEEeEEEcccCeeEEEEeeeCCC
Q 020257          159 RVTGSSPFSGIAVGSET----SGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENARKGIKIAGDVGDH  234 (328)
Q Consensus       159 nc~~~~~~~gi~igS~~----~g~i~nI~v~n~~~~~~~~gi~I~s~~g~~g~i~nI~f~nI~i~~~~~~i~i~~~y~~~  234 (328)
                      ||+|.. +|||+|||++    .+.|+||+|+||+|.++.+|++||++.+++|.|+||+|+||+|+++.+||.|++.|+..
T Consensus       265 n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~  343 (443)
T PLN02793        265 NIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDS  343 (443)
T ss_pred             EeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCC
Confidence            999965 7999999974    46899999999999999999999999988899999999999999999999999999642


Q ss_pred             CCCCCCCCCCCcEEEEEEEEEEEeecC-eeEEEEecCCCCeeeEEEEeEEEEecCCCCCCCeEeeecccCcC-ccccCCC
Q 020257          235 PDDKFNPNALPVVNGITIKDVWGTKVQ-QSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSAY-QVKPWPC  312 (328)
Q Consensus       235 ~~~~~~~~~~~~i~nIt~~nI~~~~~~-~~~~i~g~~~~~i~~I~~~nv~i~~~~~~~~~~~~c~~v~~~~~-~~~p~~~  312 (328)
                      ......+...+.|+||+|+||+++... .++.|.|.++.||+||+|+||+++..+++ ...+.|.|++|... .+.|.||
T Consensus       344 ~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~~~~~~~p~~C  422 (443)
T PLN02793        344 RKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGSSSGQVYPPPC  422 (443)
T ss_pred             CCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEeECCeEcCCcc
Confidence            211111223468999999999999753 57899999999999999999999988766 45789999999985 5788889


Q ss_pred             CCCCC
Q 020257          313 SELSS  317 (328)
Q Consensus       313 ~~~~~  317 (328)
                      ++...
T Consensus       423 ~~~~~  427 (443)
T PLN02793        423 FSDST  427 (443)
T ss_pred             ccCCC
Confidence            86543

>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 4e-31
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 6e-17
2uve_A608 Structure Of Yersinia Enterocolitica Family 28 Exop 2e-08
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 3e-06
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 1e-05
1nhc_A336 Structural Insights Into The Processivity Of Endopo 4e-05
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 5e-05
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 6e-05
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure 
Iteration: 1

 Score =  131 bits (330), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/237 (35%), Positives = 124/237 (52%), Gaps = 18/237 (7%)
Query: 57  FTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPD 116
           + RP+ ++F   R++++  V   NSP W IHPV   NV+IR + I   +  PN DGIDP+
Sbjct: 187 YLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEI--SSTGPNNDGIDPE 244
Query: 117 SSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRR--VTGSSPFSGIAVGSE 174
           S   + IE     TGDD V +KSG D  G   G PS  I +R   V   +   G+ +GSE
Sbjct: 245 SCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSE 304
Query: 175 TSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSD-----VYMENARKGIKIAG 229
            SGGV NV+A +    NV   + +KTN  RGG++ NI   D     V  E  R  ++   
Sbjct: 305 MSGGVRNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDN 364
Query: 230 DVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQG 286
           + G++         LPVV  + +K++  T  + +  I+GL+N     I +S+  ++G
Sbjct: 365 EEGEY---------LPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEG 412
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 5e-92
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 4e-91
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 2e-82
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 3e-70
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 6e-69
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 1e-65
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 6e-64
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-63
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 2e-61
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 3e-54
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 4e-31
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 1e-23
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 1e-20
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 2e-20
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 5e-20
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 2e-15
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 1e-09
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
 Score =  280 bits (718), Expect = 5e-92
 Identities = 89/332 (26%), Positives = 139/332 (41%), Gaps = 47/332 (14%)

Query: 10  WISNAIFRFLSDFLISKFEKISFIGENGTIDGQGA--IWWNMWRQRTL------------ 55
           +    ++ +         E ++  G  G +DG      WW    ++              
Sbjct: 105 FEGIELYNYSPLVYALDCENVAITGS-GVLDGSADNEHWWPWKGKKDFGWKEGLPNQQED 163

Query: 56  ----------------------PFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSN 93
                                  + RP+ ++F   R++++  V   NSP W IHPV   N
Sbjct: 164 VKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSEN 223

Query: 94  VVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSS 153
           V+IR + I +    PN DGIDP+S   + IE     TGDD V +KSG D  G   G PS 
Sbjct: 224 VIIRNIEISST--GPNNDGIDPESCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSE 281

Query: 154 GITIRR--VTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNI 211
            I +R   V   +   G+ +GSE SGGV NV+A +    NV   + +KTN  RGG++ NI
Sbjct: 282 YILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERALRLKTNSRRGGYMENI 341

Query: 212 TVSDVYMENARKG-IKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLK 270
              D    N  +  I+I     +   +      LPVV  + +K++  T  + +  I+GL+
Sbjct: 342 FFIDNVAVNVSEEVIRINLRYDNEEGE-----YLPVVRSVFVKNLKATGGKYAVRIEGLE 396

Query: 271 NSPFTGICLSNINLQGVAGPTSPPLKCSDVSG 302
           N     I +S+  ++G             +  
Sbjct: 397 NDYVKDILISDTIIEGAKISVLLEFGQLGMEN 428
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query328
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.97
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.94
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.94
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.94
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.94
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.92
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.92
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.92
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.92
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.91
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.91
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.9
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.9
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.81
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.81
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 99.77
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.66
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.59
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.58
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.56
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.54
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.32
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 98.6
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.5
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.49
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.49
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.48
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.37
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.32
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.3
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.23
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.21
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.17
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.13
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.12
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.1
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.06
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.06
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.04
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.99
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.87
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.72
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.57
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 97.46
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.44
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.33
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.32
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.24
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.86
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.46
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.36
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.15
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.64
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 95.11
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 94.73
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 93.91
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 93.58
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 93.31
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 92.46
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 92.45
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 90.78
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 90.07
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 87.45
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 84.55
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 83.15
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=8.5e-57  Score=438.85  Aligned_cols=280  Identities=31%  Similarity=0.510  Sum_probs=252.0

Q ss_pred             eEEeecccCCceeeEEEeccEeeEEEeCCeEEEcCC--chhhhhhhc---------------------------------
Q 020257            8 LIWISNAIFRFLSDFLISKFEKISFIGENGTIDGQG--AIWWNMWRQ---------------------------------   52 (328)
Q Consensus         8 ~~w~~~~~~~~~~li~~~~~~nv~I~G~~G~IdG~g--~~~w~~~~~---------------------------------   52 (328)
                      +.|+|.+++++.+||++.+++||+|+|. |+|||+|  +.||+....                                 
T Consensus       103 ~~~~G~~~~~~~~lI~~~~~~ni~ItG~-GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~  181 (448)
T 3jur_A          103 TRFEGIELYNYSPLVYALDCENVAITGS-GVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERV  181 (448)
T ss_dssp             EEETTEEEEESCCSEEEESCEEEEEESS-CEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHHTCCGGGCB
T ss_pred             cccccccccCccceEEEeCcEeeEEEEe-EEEECCCCchhhhhhcccccccccccccccccchhhhhhhhcccCcchhhh
Confidence            5688888888899999999999999999 9999999  899975421                                 


Q ss_pred             -CCCCCCCCeEEEEEeecceEEEeEEEeCCCCcEEEeeeeEeEEEEeEEEEcCCCCCCCCeecccCCccEEEEeeEEecC
Q 020257           53 -RTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRYVTILAPADSPNTDGIDPDSSSNVCIEDSYISTG  131 (328)
Q Consensus        53 -~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~~~~i~i~~s~nv~I~~v~I~~~~~~~n~DGidi~~s~nV~I~n~~i~~~  131 (328)
                       ......||++|.|.+|+|++|+||+++|+|.|++++..|+||+|++++|.++  ++|+||||+.+|+||+|+||+|.++
T Consensus       182 ~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I~n~~i~~g  259 (448)
T 3jur_A          182 FGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIEKCRFDTG  259 (448)
T ss_dssp             CSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEEESCEEEES
T ss_pred             ccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEEEeeEEEeC
Confidence             0123589999999999999999999999999999999999999999999996  6899999999999999999999999


Q ss_pred             CceEEEccCccccCcccCCCcccEEEEeEEEeCC--CceeEEeecccCCEEeEEEEceEEeccceeEEEEEecCCCceEE
Q 020257          132 DDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSP--FSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIR  209 (328)
Q Consensus       132 DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~--~~gi~igS~~~g~i~nI~v~n~~~~~~~~gi~I~s~~g~~g~i~  209 (328)
                      ||||++|++++++|+++..|++||+|+||+|++.  ++||+|||++.++++||+|+||+|.++.+|++||++.+++|.|+
T Consensus       260 DDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~v~nV~v~n~~~~~t~~GirIKt~~g~gG~v~  339 (448)
T 3jur_A          260 DDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERALRLKTNSRRGGYME  339 (448)
T ss_dssp             SEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTCEEEEEEESCEEESCSEEEEEECCTTTCSEEE
T ss_pred             CCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcccCcEEEEEEEEEEEecccceEEEEEEcCCCceEe
Confidence            9999999999999988888999999999999543  45999999999999999999999999999999999988899999


Q ss_pred             EEEEEeEEEcccCeeE-EEEeeeCCCCCCCCCCCCCCcEEEEEEEEEEEeecCeeEEEEecCCCCeeeEEEEeEEEEecC
Q 020257          210 NITVSDVYMENARKGI-KIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTKVQQSGLIQGLKNSPFTGICLSNINLQGVA  288 (328)
Q Consensus       210 nI~f~nI~i~~~~~~i-~i~~~y~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~~~~i~~I~~~nv~i~~~~  288 (328)
                      ||+|+||+|+++.+|+ .|++.|....     +...+.|+||+|+||+++....++.|.|.++.||++|+|+||++++..
T Consensus       340 nI~f~ni~m~~v~~~~i~I~~~Y~~~~-----~~~~~~i~nI~~~NI~~t~~~~~i~i~g~~~~p~~~I~~~nv~i~~~~  414 (448)
T 3jur_A          340 NIFFIDNVAVNVSEEVIRINLRYDNEE-----GEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGAK  414 (448)
T ss_dssp             EEEEESCEEEEESSEEEEEESCGGGCC-----CSCCCEEEEEEEESCEEEECSEEEEEECBTTBCEEEEEEEEEEEESCS
T ss_pred             eEEEEEEEEECCccccEEEEeeccCCC-----CCCCceEEEEEEEeEEEEecceEEEEEeCCCCCEeeEEEEEEEEEccc
Confidence            9999999999999988 9999886531     223468999999999999877899999999999999999999999753


Q ss_pred             CCCCCCeEeee
Q 020257          289 GPTSPPLKCSD  299 (328)
Q Consensus       289 ~~~~~~~~c~~  299 (328)
                          .+..|.+
T Consensus       415 ----~~~~~~~  421 (448)
T 3jur_A          415 ----ISVLLEF  421 (448)
T ss_dssp             ----EEEEEEE
T ss_pred             ----cceeEec
Confidence                2356666
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 328
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-49
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-46
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-46
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 1e-43
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 2e-43
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 9e-39
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 6e-35
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 2e-33
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 2e-13
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

 Score =  166 bits (421), Expect = 1e-49
 Identities = 61/286 (21%), Positives = 114/286 (39%), Gaps = 25/286 (8%)

Query: 26  KFEKISFIGENG-TIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFW 84
               ++  G +G +I+G G+ WW+         T+P      +  + +IS +   NSP  
Sbjct: 70  SGSDLTITGASGHSINGDGSRWWD-GEGGNGGKTKPKFFAAHSLTNSVISGLKIVNSPVQ 128

Query: 85  NIHPVYCSNVVIRYVTILAPA----DSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSG 140
                    + ++ +TI           NTD  D  +S+ V I  + +   DD VAV SG
Sbjct: 129 VFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNSG 188

Query: 141 WDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGSETSGGVENVLAEHINLYNVGVGIHVKT 200
            + Y           +    +G    S  +VG  +   V+NV      + N   G+ +KT
Sbjct: 189 ENIY----------FSGGYCSGGHGLSIGSVGGRSDNTVKNVTFVDSTIINSDNGVRIKT 238

Query: 201 NIGRGGFIRNITVSDVYMEN-ARKGIKIAGDVGDHPDDKFNPNALPVVNGITIKDVWGTK 259
           NI   G + ++T  D+ + + A+ GI +  + GD       P     +    + +V G+ 
Sbjct: 239 NIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSS---TPTTGVPITDFVLDNVHGSV 295

Query: 260 VQQS-GLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSGSA 304
           V     ++    +   +    +++++ G         KC++V   A
Sbjct: 296 VSSGTNILISCGSGSCSDWTWTDVSVSG----GKTSSKCTNVPSGA 337
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query328
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.9
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.9
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.89
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.89
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.88
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.86
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.82
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.66
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.71
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.02
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.96
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.87
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.84
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.81
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.68
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.65
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.51
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.28
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.07
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.86
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 96.49
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.06
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.32
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 90.48
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 89.77
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=100.00  E-value=1.3e-53  Score=400.40  Aligned_cols=261  Identities=22%  Similarity=0.352  Sum_probs=226.5

Q ss_pred             eeEEEeccEeeEEEeCC-eEEEcCCchhhhhhhcCCCCCCCCeEEEEEeecceEEEeEEEeCCCCcEEEeeeeEeEEEEe
Q 020257           20 SDFLISKFEKISFIGEN-GTIDGQGAIWWNMWRQRTLPFTRPNLIEFMNSRSIIISNVIFQNSPFWNIHPVYCSNVVIRY   98 (328)
Q Consensus        20 ~li~~~~~~nv~I~G~~-G~IdG~g~~~w~~~~~~~~~~~rp~~i~~~~~~nv~i~gi~i~n~~~~~i~i~~s~nv~I~~   98 (328)
                      +|+.+. .+||+|+|.+ |+|||+|+.||+.... .....||++|.|.+|+|++|+||+|+|||.|++++..|+||+|+|
T Consensus        65 ~l~~~~-g~ni~i~G~g~g~IDG~G~~wW~~~~~-~~~~~rP~~l~~~~~~nv~i~gitl~nsp~w~~~~~~s~nv~i~~  142 (339)
T d1ia5a_          65 PLISVS-GSDLTITGASGHSINGDGSRWWDGEGG-NGGKTKPKFFAAHSLTNSVISGLKIVNSPVQVFSVAGSDYLTLKD  142 (339)
T ss_dssp             CSEEEE-EESCEEEECTTCEEECCGGGTCSSCTT-TSSSCCCCCEEEEEEEEEEEESCEEECCSSCCEEEESCEEEEEES
T ss_pred             CeEEEE-eeeEEEEecCCCeEeCCchhhhhcccC-CCCCCCCeEEEEEecCCCEEeceEEEcCCceEEEEecccEEEEEE
Confidence            566665 5999999972 3999999999986543 346789999999999999999999999999999999999999999


Q ss_pred             EEEEcCC----CCCCCCeecccCCccEEEEeeEEecCCceEEEccCccccCcccCCCcccEEEEeEEEeCCCceeEEee-
Q 020257           99 VTILAPA----DSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGHPSSGITIRRVTGSSPFSGIAVGS-  173 (328)
Q Consensus        99 v~I~~~~----~~~n~DGidi~~s~nV~I~n~~i~~~DD~iaiks~~~~~g~~~~~~~~nV~I~nc~~~~~~~gi~igS-  173 (328)
                      ++|.+++    +++|+||||+.+|+||+|+||+|+++||||++|+            .+||+|+||+|.. +||++||+ 
T Consensus       143 v~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~~gDDcIaiks------------~~ni~i~n~~c~~-ghG~sigsl  209 (339)
T d1ia5a_         143 ITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAVNS------------GENIYFSGGYCSG-GHGLSIGSV  209 (339)
T ss_dssp             CEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEECSSCSEEESS------------EEEEEEESCEEES-SSCEEEEEE
T ss_pred             EEEecccCCccCCCCCCccccCCCCeEEEeeeEEEcCCCeEEecC------------ccEEEEEEeEEec-cccceeccc
Confidence            9999863    4689999999999999999999999999999997            4899999999986 68888765 


Q ss_pred             --cccCCEEeEEEEceEEeccceeEEEEEecCCCceEEEEEEEeEEEccc-CeeEEEEeeeCCCCCCCCCCCCCCcEEEE
Q 020257          174 --ETSGGVENVLAEHINLYNVGVGIHVKTNIGRGGFIRNITVSDVYMENA-RKGIKIAGDVGDHPDDKFNPNALPVVNGI  250 (328)
Q Consensus       174 --~~~g~i~nI~v~n~~~~~~~~gi~I~s~~g~~g~i~nI~f~nI~i~~~-~~~i~i~~~y~~~~~~~~~~~~~~~i~nI  250 (328)
                        +..+.++||+|+||++.++.+|++||++.+++|.|+||+|+||+|+++ +.||.|++.|.....   .+...+.|+||
T Consensus       210 G~~~~~~v~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nV~f~ni~~~~v~~~pI~I~~~Y~~~~~---~~~~~v~i~nI  286 (339)
T d1ia5a_         210 GGRSDNTVKNVTFVDSTIINSDNGVRIKTNIDTTGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSS---TPTTGVPITDF  286 (339)
T ss_dssp             CSSSCCEEEEEEEEEEEEESCSEEEEEEEETTCCCEEEEEEEEEEEEEEESSEEEEEEEEETCTTS---CCCSSSCEEEE
T ss_pred             ccCccccEEEEEEECCcccCCcceeEEeeeCCCCEEEEEEEEEEEEEeccccccEEEEeecCCCCC---CCCCCcEEEeE
Confidence              455789999999999999999999999999999999999999999998 579999999964321   12234589999


Q ss_pred             EEEEEEEeecC-eeEEEEecCCCCeeeEEEEeEEEEecCCCCCCCeEeeeccc
Q 020257          251 TIKDVWGTKVQ-QSGLIQGLKNSPFTGICLSNINLQGVAGPTSPPLKCSDVSG  302 (328)
Q Consensus       251 t~~nI~~~~~~-~~~~i~g~~~~~i~~I~~~nv~i~~~~~~~~~~~~c~~v~~  302 (328)
                      +|+||+++... .+..+.|.++.||+||+|+||++++.    ++++.|+|+.+
T Consensus       287 ~~~Ni~gt~~~~~~~~~~~~~~~p~~ni~~~nV~itg~----~~~~~C~nv~~  335 (339)
T d1ia5a_         287 VLDNVHGSVVSSGTNILISCGSGSCSDWTWTDVSVSGG----KTSSKCTNVPS  335 (339)
T ss_dssp             EEEEEEEEECTTSEEEEEECCTTCEEEEEEEEEEEESS----BCCSCCBSCCT
T ss_pred             EEEeEEEEecccCceEEEeCCCCCEeceEEEeEEEcCC----CcceEeECCCc
Confidence            99999998764 45677888999999999999999853    34567888765
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure