Citrus Sinensis ID: 020259

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MADTAPSRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFASAMQFFM
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHcccccccccccccHHHHHHHHHcccEEEEcccHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEcccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHcccccccccccccEEEccccccccEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHHHcccccccccHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHccHHHHHccccccccccccccHHHHHHHHHccEEEEEEccccHHHHHHHHHHHccccEEEEEcccEEEcccccEEEEcHccccccHHHHHHHHHHHHccccEEEEcccccccccHHHHHHccEEEEccccHHHHHHHHHHHHHHHccccccccccccccEEEccccccccccEEEEEccccccEEEccccccccccccEEEEccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccHHHHccHHcc
Coil and Loop (DISEMBL)
madtapsrsRDLDKLLLRagnlvgptfepgtelrDDLQEYARILVVGAGGLGCELLKDLAlsgfknlevidmdrievSNLNRQFLFRMEDVGKPKAEVAAKRVMERvsgvnivphfcriedkdisfyndfNIIVLGLDSIEARSYINAVACSFleyetddkpreetikpmvdggtegfkgharviipgvtpcfectiwlfppqvkfplctlaetprtaAHCIEYAHLikwdevhsgksfdpddpehMQWVYSEAVKRAelfgipgvtysltQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFASAMQFFM
Flexible Loop (DISEMBL)
madtapsrsrdLDKLLLRagnlvgptfepgtelRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVmervsgvnivphfcriedkdisFYNDFNIIVLGLDSIEARSYINAVACSFLeyetddkpreETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFASAMQFFM
Low Complexity Region (SEG)
MADTAPsrsrdldklllrAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKniipaiastnaiisaaCALETLKIASGCSKTLSNYLTYAQLSFFASAMQFFM
Disordered region (IsUnstruct)
**************LLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYET************VDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSG*********HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFASAMQF**
Disordered Region (DISOPRED)
******S*SRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFASAMQFFM
Disordered Region (DISEMBL)
**********DLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFASAMQFFM
Disordered Region (DISPRO)
******SRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFASAMQFFM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADTAPSRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFASAMQFFM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
O65041	454	NEDD8-activating enzyme E	yes	no	0.939	0.678	0.853	1e-159
Q99MI7	462	NEDD8-activating enzyme E	yes	no	0.932	0.662	0.554	3e-97
Q8C878	462	NEDD8-activating enzyme E	yes	no	0.932	0.662	0.551	5e-97
Q8TBC4	463	NEDD8-activating enzyme E	yes	no	0.932	0.660	0.548	9e-97
Q5R4A0	463	NEDD8-activating enzyme E	yes	no	0.932	0.660	0.545	1e-96
Q54QG9	442	NEDD8-activating enzyme E	yes	no	0.954	0.708	0.527	2e-96
Q19360	430	NEDD8-activating enzyme E	yes	no	0.951	0.725	0.561	1e-95
Q7ZVX6	462	NEDD8-activating enzyme E	yes	no	0.914	0.649	0.555	2e-95
Q9V6U8	450	NEDD8-activating enzyme E	yes	no	0.945	0.688	0.543	1e-91
Q09765	444	NEDD8-activating enzyme E	yes	no	0.810	0.599	0.450	1e-74

>sp|O65041|UBA3_ARATH NEDD8-activating enzyme E1 catalytic subunit OS=Arabidopsis thaliana GN=ECR1 PE=1 SV=2

 Score =  560 bits (1444), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 263/308 (85%), Positives = 283/308 (91%)

Query: 7   SRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKN 66
           S++RDLDKLLLR GNLV P F PG  LRDD+++Y RILV+GAGGLGCELLKDLALSGF+N
Sbjct: 13  SKTRDLDKLLLRHGNLVDPGFVPGPGLRDDIRDYVRILVIGAGGLGCELLKDLALSGFRN 72

Query: 67  LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISF 126
           LEVIDMDRIEV+NLNRQFLFR+EDVGKPKAEVAAKRVMERVSGV IVPHF RIEDK+I F
Sbjct: 73  LEVIDMDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVMERVSGVEIVPHFSRIEDKEIEF 132

Query: 127 YNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII 186
           YNDFNII LGLDSIEAR YIN VAC FLEY  DD P+ ETIKPMVDGGTEGFKGHARVI+
Sbjct: 133 YNDFNIIALGLDSIEARKYINGVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVIL 192

Query: 187 PGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEH 246
           PGVTPCFECTI+LFPPQVKFPLCTLAETPR AAHCIEYAHLI+W+ VH GK+FDPD+PEH
Sbjct: 193 PGVTPCFECTIYLFPPQVKFPLCTLAETPRNAAHCIEYAHLIQWETVHRGKTFDPDEPEH 252

Query: 247 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK 306
           M+WVY EA++RAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKI S CSK
Sbjct: 253 MKWVYDEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSK 312

Query: 307 TLSNYLTY 314
           TL NYLTY
Sbjct: 313 TLVNYLTY 320

Catalytic subunit of the dimeric ECR1-AXR1 E1 enzyme. E1 activates NEDD8/RUB1 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-ECR1 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of RCE1.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q99MI7|UBA3_RAT NEDD8-activating enzyme E1 catalytic subunit OS=Rattus norvegicus GN=Uba3 PE=1 SV=1

 Score =  355 bits (910), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 172/310 (55%), Positives = 222/310 (71%), Gaps = 4/310 (1%)

Query: 8   RSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNL 67
           R   + K L R+G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ +
Sbjct: 37  RWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQI 96

Query: 68  EVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFY 127
            VIDMD I+VSNLNRQFLFR +DVG+PKAEVAA+ + +RV   N+VPHF +I+D + +FY
Sbjct: 97  HVIDMDTIDVSNLNRQFLFRPKDVGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFY 156

Query: 128 NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIP 187
             F+IIV GLDSI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+P
Sbjct: 157 RQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILP 215

Query: 188 GVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDP 244
           G+T C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDP
Sbjct: 216 GMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGDGVPLDGDDP 275

Query: 245 EHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGC 304
           EH+QW++ ++V+RA  + I GVTY LTQGVVK IIPA+ASTNA+I+A CA E  KIA+  
Sbjct: 276 EHIQWIFQKSVERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSA 335

Query: 305 SKTLSNYLTY 314
              L+NYL +
Sbjct: 336 YIPLNNYLVF 345

Catalytic subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Down-regulates steroid receptor activity. Necessary for cell cycle progression.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8C878|UBA3_MOUSE NEDD8-activating enzyme E1 catalytic subunit OS=Mus musculus GN=Uba3 PE=1 SV=2

 Score =  354 bits (909), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 171/310 (55%), Positives = 222/310 (71%), Gaps = 4/310 (1%)

Query: 8   RSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNL 67
           R   + K L R+G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ +
Sbjct: 37  RWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQI 96

Query: 68  EVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFY 127
            VIDMD I+VSNLNRQFLFR +DVG+PKAEVAA+ + +RV   N+VPHF +I+D + +FY
Sbjct: 97  HVIDMDTIDVSNLNRQFLFRPKDVGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFY 156

Query: 128 NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIP 187
             F+IIV GLDSI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+P
Sbjct: 157 RQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILP 215

Query: 188 GVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDP 244
           G+T C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDP
Sbjct: 216 GMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGDGVPLDGDDP 275

Query: 245 EHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGC 304
           EH+QW++ ++++RA  + I GVTY LTQGVVK IIPA+ASTNA+I+A CA E  KIA+  
Sbjct: 276 EHIQWIFQKSIERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSA 335

Query: 305 SKTLSNYLTY 314
              L+NYL +
Sbjct: 336 YIPLNNYLVF 345

Catalytic subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Down-regulates steroid receptor activity. Necessary for cell cycle progression.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8TBC4|UBA3_HUMAN NEDD8-activating enzyme E1 catalytic subunit OS=Homo sapiens GN=UBA3 PE=1 SV=2

 Score =  353 bits (906), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 170/310 (54%), Positives = 222/310 (71%), Gaps = 4/310 (1%)

Query: 8   RSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNL 67
           R   + K L R+G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ +
Sbjct: 37  RWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQI 96

Query: 68  EVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFY 127
            VIDMD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY
Sbjct: 97  HVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFY 156

Query: 128 NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIP 187
             F+IIV GLDSI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+P
Sbjct: 157 RQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILP 215

Query: 188 GVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDP 244
           G+T C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDP
Sbjct: 216 GMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDP 275

Query: 245 EHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGC 304
           EH+QW++ ++++RA  + I GVTY LTQGVVK IIPA+ASTNA+I+A CA E  KIA+  
Sbjct: 276 EHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSA 335

Query: 305 SKTLSNYLTY 314
              L+NYL +
Sbjct: 336 YIPLNNYLVF 345

Catalytic subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Down-regulates steroid receptor activity. Necessary for cell cycle progression.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5R4A0|UBA3_PONAB NEDD8-activating enzyme E1 catalytic subunit OS=Pongo abelii GN=UBA3 PE=2 SV=2

 Score =  353 bits (905), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 169/310 (54%), Positives = 222/310 (71%), Gaps = 4/310 (1%)

Query: 8   RSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNL 67
           R   + K L R+G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ +
Sbjct: 37  RWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQI 96

Query: 68  EVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFY 127
            VIDMD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY
Sbjct: 97  HVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFY 156

Query: 128 NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIP 187
             F+IIV GLDSI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+P
Sbjct: 157 RQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILP 215

Query: 188 GVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDP 244
           G+T C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDP
Sbjct: 216 GMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDP 275

Query: 245 EHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGC 304
           EH+QW++ ++++RA  + I GVTY LTQGVVK IIPA+ASTNA+++A CA E  KIA+  
Sbjct: 276 EHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVVAAVCATEVFKIATSA 335

Query: 305 SKTLSNYLTY 314
              L+NYL +
Sbjct: 336 YIPLNNYLVF 345

Catalytic subunit of the dimeric UBA3-NAE1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-UBA3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of UBE2M. Down-regulates steroid receptor activity. Necessary for cell cycle progression.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q54QG9|UBA3_DICDI NEDD8-activating enzyme E1 catalytic subunit OS=Dictyostelium discoideum GN=uba3 PE=1 SV=1

 Score =  352 bits (904), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 170/322 (52%), Positives = 223/322 (69%), Gaps = 9/322 (2%)

Query: 6   PSRSRDLDKLLLRAGNLVGPTFEPGTE----LRDDLQEYARILVVGAGGLGCELLKDLAL 61
           P R  D++K++ R G    P+FEP T+    + + LQ   ++LV+GAGGLGCE+LK+LAL
Sbjct: 11  PGRWIDIEKIIKRTGPFASPSFEPDTKASPNIMNGLQNDFKVLVIGAGGLGCEILKNLAL 70

Query: 62  SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED 121
           SGF+N++VIDMD I++SNLNRQFLFR +DVGK KAEVAA  +  R++G N+ PH CRI+D
Sbjct: 71  SGFRNIDVIDMDTIDISNLNRQFLFRRKDVGKSKAEVAAAFINSRITGCNVTPHKCRIQD 130

Query: 122 KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGH 181
           KD  +Y  F I++ GLDSIEAR +IN +  + +          +TI P+VDGGTEGFKG 
Sbjct: 131 KDEDYYRQFKIVIAGLDSIEARRWINGLLVNLVVVNDSGDIEPDTIIPLVDGGTEGFKGQ 190

Query: 182 ARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDP 241
           ARVI+P ++ CFEC++  FPPQV + +CT+A TPR   HCI++A L    +    K FDP
Sbjct: 191 ARVILPKISSCFECSLDAFPPQVSYAICTIANTPRVPEHCIQWALLFGLQDATLEKPFDP 250

Query: 242 -----DDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALE 296
                D+P+HM W++  A KRAE F I GVTY LTQGV KNIIPAIASTNAII+AAC  E
Sbjct: 251 KQFDNDNPDHMNWLFECAKKRAEKFNINGVTYKLTQGVAKNIIPAIASTNAIIAAACCNE 310

Query: 297 TLKIASGCSKTLSNYLTYAQLS 318
             K  +  S  L+NY+ Y  L+
Sbjct: 311 VFKFCTDSSGYLNNYMMYNGLN 332

Regulatory subunit of the dimeric uba3-nae1 E1 enzyme. E1 activates nedd8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a nedd8-uba3 thioester and free AMP. E1 finally transfers nedd8 to the catalytic cysteine of ube2m.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q19360|UBA3_CAEEL NEDD8-activating enzyme E1 catalytic subunit OS=Caenorhabditis elegans GN=uba-3 PE=2 SV=2

 Score =  350 bits (897), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 177/315 (56%), Positives = 215/315 (68%), Gaps = 3/315 (0%)

Query: 5   APSRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGF 64
           A  R R + +L  R      P F PG E  + LQ   +ILV+GAGGLGCELLK+LALSGF
Sbjct: 8   ATERWRSIRRLTDRDSAYKVPWFVPGPENFEALQN-TKILVIGAGGLGCELLKNLALSGF 66

Query: 65  KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDI 124
           + +EVIDMD I+VSNLNRQFLFR  DVGK KAEVAA  V +RV G  +  H CRIEDK  
Sbjct: 67  RTIEVIDMDTIDVSNLNRQFLFRESDVGKSKAEVAAAFVQQRVVGCQVTAHNCRIEDKGQ 126

Query: 125 SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARV 184
            FY  F+II+ GLDSI AR +IN + C  +    D KP E TI PM+DGGTEGFKG+ARV
Sbjct: 127 EFYRKFSIIICGLDSIPARRWINGMLCDLVLEMADGKPDENTIIPMIDGGTEGFKGNARV 186

Query: 185 IIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH--SGKSFDPD 242
           I P  T C +CT+ L+PPQV FPLCT+A TPR   HCIEY  ++ W E     G S D D
Sbjct: 187 IYPKFTACIDCTLDLYPPQVNFPLCTIAHTPRLPEHCIEYIKVVVWPEEKPFEGVSLDAD 246

Query: 243 DPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIAS 302
           DP H++WV   A  RAE + I GV   LT GV+K IIPA+ASTNA+I+A+CALE LK+A+
Sbjct: 247 DPIHVEWVLERASLRAEKYNIRGVDRRLTSGVLKRIIPAVASTNAVIAASCALEALKLAT 306

Query: 303 GCSKTLSNYLTYAQL 317
             +K + NYL + Q+
Sbjct: 307 NIAKPIDNYLNFTQI 321

Catalytic subunit of the dimeric uba-3-ula-1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-uba-3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of ubc-12 (By similarity). Required for cytokinesis and mitotic spindle orientation.

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7ZVX6|UBA3_DANRE NEDD8-activating enzyme E1 catalytic subunit OS=Danio rerio GN=uba3 PE=2 SV=1

 Score =  349 bits (895), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 169/304 (55%), Positives = 219/304 (72%), Gaps = 4/304 (1%)

Query: 14  KLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD 73
           K L R G    P FE  TE    L +  +ILV+GAGGLGCELLKDLALSGF+++ V+DMD
Sbjct: 42  KFLERTGPFTHPDFEASTESLQFLLDTCKILVIGAGGLGCELLKDLALSGFRHIHVVDMD 101

Query: 74  RIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNII 133
            I+VSNLNRQFLFR +DVG+PKAEVAA  V +RV G ++VPHF +I+D D +FY  F+I+
Sbjct: 102 TIDVSNLNRQFLFRPKDVGRPKAEVAADFVNDRVPGCSVVPHFKKIQDLDETFYRQFHIV 161

Query: 134 VLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCF 193
           V GLDS+ AR ++N +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C 
Sbjct: 162 VCGLDSVIARRWMNGMLLSLLIYE-DGVLDPSSIIPLIDGGTEGFKGNARVILPGMTACI 220

Query: 194 ECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDE---VHSGKSFDPDDPEHMQWV 250
           +CT+ L+PPQ+ FP+CT+A  PR   HC+EY  ++ W +      G   D DDP+H+QWV
Sbjct: 221 DCTLELYPPQINFPMCTIASMPRLPEHCVEYVRMLLWPKEKPFGDGVVLDGDDPKHIQWV 280

Query: 251 YSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN 310
           Y ++++RA  F I GVTY LTQGVVK IIPA+ASTNA+I+AACA E  KIA+     L+N
Sbjct: 281 YQKSLERAAEFNITGVTYRLTQGVVKRIIPAVASTNAVIAAACATEVFKIATSAYVPLNN 340

Query: 311 YLTY 314
           YL +
Sbjct: 341 YLVF 344

Catalytic subunit of the dimeric uba3-nae1 E1 enzyme. E1 activates nedd8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a nedd8-uba3 thioester and free AMP. E1 finally transfers nedd8 to the catalytic cysteine of ube2m.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9V6U8|UBA3_DROME NEDD8-activating enzyme E1 catalytic subunit OS=Drosophila melanogaster GN=CG13343 PE=2 SV=1

 Score =  336 bits (861), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 169/311 (54%), Positives = 215/311 (69%), Gaps = 1/311 (0%)

Query: 8   RSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNL 67
           R   L  +L R G      F   +E  + LQ   ++L++GAGGLGCELLKDLAL GF NL
Sbjct: 16  RFNGLRNILEREGPFCKDGFAASSENLEFLQTKCQVLIIGAGGLGCELLKDLALMGFGNL 75

Query: 68  EVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFY 127
            VIDMD IE+SNLNRQFLFR  D+G  KAE AA+ +  RV    + PHF +I+D D SFY
Sbjct: 76  HVIDMDTIELSNLNRQFLFRRTDIGASKAECAARFINARVPTCRVTPHFKKIQDFDESFY 135

Query: 128 NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIP 187
             F+++V GLDSI AR +IN +  S L YE D      +I PM+DGGTEGFKG+ARVI+P
Sbjct: 136 QQFHLVVCGLDSIVARRWINGMLLSMLRYEEDGTIDTSSIVPMIDGGTEGFKGNARVILP 195

Query: 188 GVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHS-GKSFDPDDPEH 246
           G T C ECT+ LFPPQV +PLCT+A TPR   HCIEY  +I+W++ +  G   D DDP+H
Sbjct: 196 GFTACIECTLDLFPPQVNYPLCTIANTPRLPEHCIEYVKIIQWEKQNPFGVPLDGDDPQH 255

Query: 247 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK 306
           + W+Y  A++R+  F I GVTY L QGVVK+IIPA+ASTNA I+AACALE  K+A+ C  
Sbjct: 256 IGWIYERALERSNEFNITGVTYRLVQGVVKHIIPAVASTNAAIAAACALEVFKLATSCYD 315

Query: 307 TLSNYLTYAQL 317
           +++NYL +  L
Sbjct: 316 SMANYLNFNDL 326

Catalytic subunit of the dimeric Uba3-Ula1 E1 enzyme. E1 activates NEDD8 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-Uba3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of Ubc12.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q09765|UBA3_SCHPO NEDD8-activating enzyme E1 catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uba3 PE=1 SV=1

 Score =  280 bits (715), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/295 (45%), Positives = 194/295 (65%), Gaps = 29/295 (9%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           ++IL++GAGGLGCE+LKDLALSGF++L VIDMD I+++NLNRQFLF   ++ +PKA VAA
Sbjct: 45  SKILIIGAGGLGCEILKDLALSGFRDLSVIDMDTIDITNLNRQFLFNESNIDEPKANVAA 104

Query: 101 KRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDD 160
             +M+R+    + P + +I+DK I FY +F +I+ GLDS+EAR +IN+   +    +T D
Sbjct: 105 SMIMKRIPSTVVTPFYGKIQDKTIEFYKEFKLIICGLDSVEARRWINSTLVAIA--KTGD 162

Query: 161 KPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAH 220
                 + P+VDGG+EG KG ARVIIP +T C+EC++ +  P++ +P+CTLA TPR   H
Sbjct: 163 ------LIPLVDGGSEGLKGQARVIIPTITSCYECSLDMLTPKISYPICTLANTPRLPEH 216

Query: 221 CIEYAHLIKWDEVHSGKS-------------------FDPDDPEHMQWVYSEAVKRAELF 261
           C+E+A+L++W  V    S                   F+PD+  H+ W+   +++RA  F
Sbjct: 217 CVEWAYLLEWPRVFLNASVDSFSKQEVFEPLDGKNSNFEPDNIRHIDWLVKRSIERANKF 276

Query: 262 GIPGVTYS--LTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTY 314
            IP  + +    QG+VK IIPA+ASTNAII+A+C  E LKI +  +  L NY+ Y
Sbjct: 277 QIPSSSINRFFVQGIVKRIIPAVASTNAIIAASCCNEALKILTESNPFLDNYMMY 331

Catalytic subunit of the dimeric uba3-ula1 E1 enzyme. E1 activates NEDD8/ubl1 by first adenylating its C-terminal glycine residue with ATP, thereafter linking this residue to the side chain of the catalytic cysteine, yielding a NEDD8-uba3 thioester and free AMP. E1 finally transfers NEDD8 to the catalytic cysteine of ubc12.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
225432556	449	PREDICTED: NEDD8-activating enzyme E1 ca	0.957	0.699	0.924	1e-172
255552279	449	ubiquitin-activating enzyme E1c, putativ	0.957	0.699	0.901	1e-170
224100343	449	predicted protein [Populus trichocarpa]	0.939	0.685	0.918	1e-169
449432724	449	PREDICTED: NEDD8-activating enzyme E1 ca	0.939	0.685	0.905	1e-169
224110476	449	predicted protein [Populus trichocarpa]	0.957	0.699	0.895	1e-169
357480207	454	NEDD8-activating enzyme E1 catalytic sub	0.957	0.691	0.878	1e-168
356521961	446	PREDICTED: NEDD8-activating enzyme E1 ca	0.954	0.701	0.891	1e-167
356563478	446	PREDICTED: NEDD8-activating enzyme E1 ca	0.954	0.701	0.882	1e-166
18419850	454	ubiquitin-activating enzyme E1 C [Arabid	0.939	0.678	0.853	1e-157
297807971	453	hypothetical protein ARALYDRAFT_909950 [	0.939	0.679	0.850	1e-157

>gi|225432556|ref|XP_002280928.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit [Vitis vinifera] gi|297736997|emb|CBI26198.3| unnamed protein product [Vitis vinifera]

 Score =  610 bits (1574), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 292/316 (92%), Positives = 304/316 (96%), Gaps = 2/316 (0%)

Query: 1   MADTAP--SRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKD 58
           MAD+    SRSRDLDKLLLR G+LVGPTFEPG ELRDDL+++A +LVVGAGGLGCELLKD
Sbjct: 1   MADSTAHVSRSRDLDKLLLRPGHLVGPTFEPGPELRDDLRKFATVLVVGAGGLGCELLKD 60

Query: 59  LALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118
           LALSGFKNLEVIDMDRIEVSNLNRQFLFR++DVGKPKAEVAAKRVMERVSGVNIVPHFCR
Sbjct: 61  LALSGFKNLEVIDMDRIEVSNLNRQFLFRLQDVGKPKAEVAAKRVMERVSGVNIVPHFCR 120

Query: 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 178
           IEDKDI FYN FNII LGLDSIEARSYINAVACSFLEY++DDKP EETIKPMVDGGTEGF
Sbjct: 121 IEDKDIEFYNHFNIIALGLDSIEARSYINAVACSFLEYDSDDKPLEETIKPMVDGGTEGF 180

Query: 179 KGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKS 238
           KGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGK+
Sbjct: 181 KGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKA 240

Query: 239 FDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETL 298
           FDPDDPEHM+WVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETL
Sbjct: 241 FDPDDPEHMKWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETL 300

Query: 299 KIASGCSKTLSNYLTY 314
           KI SGCSKTLSNYLTY
Sbjct: 301 KIVSGCSKTLSNYLTY 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552279|ref|XP_002517184.1| ubiquitin-activating enzyme E1c, putative [Ricinus communis] gi|223543819|gb|EEF45347.1| ubiquitin-activating enzyme E1c, putative [Ricinus communis]

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 285/316 (90%), Positives = 304/316 (96%), Gaps = 2/316 (0%)

Query: 1   MADTA--PSRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKD 58
           MAD+   PSRSRDLDKLLLR GNLV PTF+PG +LRDDLQEY RILVVGAGGLGCELLKD
Sbjct: 1   MADSTVQPSRSRDLDKLLLRPGNLVAPTFDPGVQLRDDLQEYVRILVVGAGGLGCELLKD 60

Query: 59  LALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118
           LALSGFKNLEVIDMDRIEVSNLNRQFLFR+EDVGKPKAEVAAKRVMERVSGVNIVPHFCR
Sbjct: 61  LALSGFKNLEVIDMDRIEVSNLNRQFLFRLEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 120

Query: 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 178
           IEDK++ FYNDF+IIVLGLDSIEARSYIN VACSFLEY+++D PR++T+KPMVDGGTEGF
Sbjct: 121 IEDKELDFYNDFSIIVLGLDSIEARSYINNVACSFLEYDSEDNPRDDTMKPMVDGGTEGF 180

Query: 179 KGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKS 238
           KGHARVI+PG+TPCFECTIWLFPPQVKFPLCTLAETPRT AHCIEYAHLIKW+EVHSGK+
Sbjct: 181 KGHARVIMPGITPCFECTIWLFPPQVKFPLCTLAETPRTPAHCIEYAHLIKWNEVHSGKA 240

Query: 239 FDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETL 298
           FDPDDPEHM+WVY+EAVKRAELFGI GVTYSLTQGVVKNIIPAIASTNAIISAACALETL
Sbjct: 241 FDPDDPEHMKWVYTEAVKRAELFGIQGVTYSLTQGVVKNIIPAIASTNAIISAACALETL 300

Query: 299 KIASGCSKTLSNYLTY 314
           KIASGCSKTLSNYLTY
Sbjct: 301 KIASGCSKTLSNYLTY 316

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100343|ref|XP_002311839.1| predicted protein [Populus trichocarpa] gi|222851659|gb|EEE89206.1| predicted protein [Populus trichocarpa]

 Score =  601 bits (1549), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 283/308 (91%), Positives = 296/308 (96%)

Query: 7   SRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKN 66
           SRSRDLDKLLLR GNLV PTFEPG +LRDDLQEYARILV+GAGGLGCELLKDLALSGFKN
Sbjct: 9   SRSRDLDKLLLRPGNLVAPTFEPGAQLRDDLQEYARILVIGAGGLGCELLKDLALSGFKN 68

Query: 67  LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISF 126
           LEVIDMDRIEV+NLNRQFLFR+EDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK+I F
Sbjct: 69  LEVIDMDRIEVTNLNRQFLFRLEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKEIDF 128

Query: 127 YNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII 186
           Y DF IIVLGLDS+EARSYINAVAC FLEY++DD P EET+KPMVDGGTEGFKGHARVII
Sbjct: 129 YKDFIIIVLGLDSVEARSYINAVACGFLEYDSDDNPIEETVKPMVDGGTEGFKGHARVII 188

Query: 187 PGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEH 246
           PG TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGK+FDPDDPEH
Sbjct: 189 PGSTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKTFDPDDPEH 248

Query: 247 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK 306
           M+WVY+EAVKRAELFGI GVTYSLTQGVVKNIIPAIASTNAIISAAC LETLK+ASGCSK
Sbjct: 249 MKWVYTEAVKRAELFGIQGVTYSLTQGVVKNIIPAIASTNAIISAACTLETLKLASGCSK 308

Query: 307 TLSNYLTY 314
           TLSNYLTY
Sbjct: 309 TLSNYLTY 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432724|ref|XP_004134149.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Cucumis sativus] gi|449515377|ref|XP_004164726.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Cucumis sativus]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 279/308 (90%), Positives = 298/308 (96%)

Query: 7   SRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKN 66
           SRSRDLDKLLLR GNL+G  FEPG++LRDDLQ+Y ++LV+GAGGLGCELLKDLALSGF+N
Sbjct: 9   SRSRDLDKLLLRPGNLIGANFEPGSQLRDDLQQYVKVLVIGAGGLGCELLKDLALSGFRN 68

Query: 67  LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISF 126
           LEVIDMDRIEV+NLNRQFLFR+EDVGKPKAEVAAKRVMERVSGVNI+PHFCRIEDK+I F
Sbjct: 69  LEVIDMDRIEVTNLNRQFLFRLEDVGKPKAEVAAKRVMERVSGVNILPHFCRIEDKEIEF 128

Query: 127 YNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII 186
           YNDF+II LGLDSIEARSYIN+VACSFLEY++DD P EETIKPMVDGGTEGFKGHARVI+
Sbjct: 129 YNDFHIIALGLDSIEARSYINSVACSFLEYDSDDNPLEETIKPMVDGGTEGFKGHARVIL 188

Query: 187 PGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEH 246
           PGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDD EH
Sbjct: 189 PGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDSEH 248

Query: 247 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK 306
           M+WVYSEA+KRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKI SGCSK
Sbjct: 249 MKWVYSEALKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSGCSK 308

Query: 307 TLSNYLTY 314
           TLSNYLTY
Sbjct: 309 TLSNYLTY 316

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110476|ref|XP_002315531.1| predicted protein [Populus trichocarpa] gi|222864571|gb|EEF01702.1| predicted protein [Populus trichocarpa]

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 283/316 (89%), Positives = 300/316 (94%), Gaps = 2/316 (0%)

Query: 1   MADTA--PSRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKD 58
           MAD+    SRSRDLDKLLLR GNLV PTFE G +LRDDLQEYAR+LV+GAGGLGCELLKD
Sbjct: 1   MADSTVQQSRSRDLDKLLLRPGNLVAPTFESGVQLRDDLQEYARLLVIGAGGLGCELLKD 60

Query: 59  LALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 118
           LALSGFKNLEVIDMDRIEV+NLNRQFLFR+EDVGKPKAEVAAKRVMERVSGVNIVPHFCR
Sbjct: 61  LALSGFKNLEVIDMDRIEVTNLNRQFLFRLEDVGKPKAEVAAKRVMERVSGVNIVPHFCR 120

Query: 119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF 178
           IEDK+I FY DF+IIVLGLDS+EARSYINAVAC FLEY++DD P EET+KPMVDGGTEGF
Sbjct: 121 IEDKEIDFYKDFSIIVLGLDSVEARSYINAVACGFLEYDSDDNPLEETVKPMVDGGTEGF 180

Query: 179 KGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKS 238
           KGHARVI+PG TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGK+
Sbjct: 181 KGHARVIMPGSTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKT 240

Query: 239 FDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETL 298
           FDPDDPEHM+WVY+EAVKRAELFGI GVTYSLTQGVVKNIIPAIASTNAIISAAC LETL
Sbjct: 241 FDPDDPEHMKWVYTEAVKRAELFGIQGVTYSLTQGVVKNIIPAIASTNAIISAACTLETL 300

Query: 299 KIASGCSKTLSNYLTY 314
           K+ASGCSKTLSNYLTY
Sbjct: 301 KLASGCSKTLSNYLTY 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480207|ref|XP_003610389.1| NEDD8-activating enzyme E1 catalytic subunit [Medicago truncatula] gi|355511444|gb|AES92586.1| NEDD8-activating enzyme E1 catalytic subunit [Medicago truncatula]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 282/321 (87%), Positives = 301/321 (93%), Gaps = 7/321 (2%)

Query: 1   MADTA-------PSRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGC 53
           MADT+       PSRSRDLDKLLLR GNLVGP FEPG ELRDDLQE+A++LVVGAGGLGC
Sbjct: 1   MADTSAQIQQQQPSRSRDLDKLLLRPGNLVGPRFEPGAELRDDLQEFAKVLVVGAGGLGC 60

Query: 54  ELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIV 113
           ELLKDLALSGF+NL+VIDMDRIEV+NLNRQFLFR+EDVGKPKAEVAAKRVMER+SGVNIV
Sbjct: 61  ELLKDLALSGFRNLDVIDMDRIEVTNLNRQFLFRLEDVGKPKAEVAAKRVMERISGVNIV 120

Query: 114 PHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDG 173
           PHFCRIEDK+I FYNDF+II LGLDSIEARSYIN VACSFLEY++DD PREETIKPMVDG
Sbjct: 121 PHFCRIEDKEIEFYNDFSIIALGLDSIEARSYINTVACSFLEYDSDDNPREETIKPMVDG 180

Query: 174 GTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEV 233
           GTEGFKGHARVI+PG+TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEV
Sbjct: 181 GTEGFKGHARVIMPGITPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEV 240

Query: 234 HSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAAC 293
           H G  FDPD+PE+M+WVY EAVKRAELFGIPGVTYS TQGVVKNIIPAIASTNAIISAAC
Sbjct: 241 HRGVPFDPDNPENMKWVYDEAVKRAELFGIPGVTYSFTQGVVKNIIPAIASTNAIISAAC 300

Query: 294 ALETLKIASGCSKTLSNYLTY 314
           ALETLKIA+ CSKTLSNYLTY
Sbjct: 301 ALETLKIATECSKTLSNYLTY 321

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521961|ref|XP_003529618.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Glycine max]

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 280/314 (89%), Positives = 300/314 (95%), Gaps = 1/314 (0%)

Query: 1   MADTAPSRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLA 60
           MADT+ SRSRDLDKLLLR GNLVGP FEPG ELRDDLQ +A++LVVGAGGLGCELLKDLA
Sbjct: 1   MADTS-SRSRDLDKLLLRPGNLVGPRFEPGPELRDDLQAFAKVLVVGAGGLGCELLKDLA 59

Query: 61  LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE 120
           LSGF+NLEVIDMDRIEV+NLNRQFLFR+EDVGKPKAEVAAKRVMER+SGV IVPHFCRIE
Sbjct: 60  LSGFRNLEVIDMDRIEVTNLNRQFLFRLEDVGKPKAEVAAKRVMERISGVEIVPHFCRIE 119

Query: 121 DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKG 180
           DK+I FYN+FNII LGLDSIEARSYIN VACSFLEY++DD P+EETIKPMVDGGTEGFKG
Sbjct: 120 DKEIEFYNNFNIIALGLDSIEARSYINTVACSFLEYDSDDNPQEETIKPMVDGGTEGFKG 179

Query: 181 HARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFD 240
           HARVI+PG+TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKW+EVH G +FD
Sbjct: 180 HARVIMPGITPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWNEVHGGVAFD 239

Query: 241 PDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKI 300
           PD+PEHM+WVY EAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKI
Sbjct: 240 PDNPEHMKWVYDEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKI 299

Query: 301 ASGCSKTLSNYLTY 314
           A+ CSKTLSNYLTY
Sbjct: 300 ATECSKTLSNYLTY 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563478|ref|XP_003549989.1| PREDICTED: NEDD8-activating enzyme E1 catalytic subunit-like [Glycine max]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 277/314 (88%), Positives = 298/314 (94%), Gaps = 1/314 (0%)

Query: 1   MADTAPSRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLA 60
           MADT+  RSRDLDKLLLR GNLVGP FEPG ELRDDLQ +A++LVVGAGGLGCELLKDLA
Sbjct: 1   MADTS-GRSRDLDKLLLRPGNLVGPRFEPGAELRDDLQAFAKVLVVGAGGLGCELLKDLA 59

Query: 61  LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE 120
           LSGF+NLEVIDMDRIEV+NLNRQFLFR+EDVGKPKAEVAAKRVMER++GV IVPHFCRIE
Sbjct: 60  LSGFRNLEVIDMDRIEVTNLNRQFLFRLEDVGKPKAEVAAKRVMERITGVEIVPHFCRIE 119

Query: 121 DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKG 180
           DK+I FYNDF+II LGLDSIEARSYIN VACSFLEY++DD PREETIKPMVDGGTEGFKG
Sbjct: 120 DKEIEFYNDFSIIALGLDSIEARSYINTVACSFLEYDSDDNPREETIKPMVDGGTEGFKG 179

Query: 181 HARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFD 240
           HARVI+PG+TPCFECT+WLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKW+EVH G +FD
Sbjct: 180 HARVILPGITPCFECTVWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWNEVHGGVAFD 239

Query: 241 PDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKI 300
           PD+PEHM+WVY EAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKI
Sbjct: 240 PDNPEHMKWVYDEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKI 299

Query: 301 ASGCSKTLSNYLTY 314
           A+ CSK LSNYLTY
Sbjct: 300 ATECSKILSNYLTY 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18419850|ref|NP_568370.1| ubiquitin-activating enzyme E1 C [Arabidopsis thaliana] gi|148887446|sp|O65041.2|UBA3_ARATH RecName: Full=NEDD8-activating enzyme E1 catalytic subunit; AltName: Full=RUB-activating enzyme; AltName: Full=Ubiquitin-activating enzyme E1-like protein gi|15215794|gb|AAK91442.1| AT5g19180/T24G5_80 [Arabidopsis thaliana] gi|21464561|gb|AAM52235.1| AT5g19180/T24G5_80 [Arabidopsis thaliana] gi|110740876|dbj|BAE98534.1| putative ubiquitin activating enzyme E1 [Arabidopsis thaliana] gi|332005284|gb|AED92667.1| ubiquitin-activating enzyme E1 C [Arabidopsis thaliana]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 263/308 (85%), Positives = 283/308 (91%)

Query: 7   SRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKN 66
           S++RDLDKLLLR GNLV P F PG  LRDD+++Y RILV+GAGGLGCELLKDLALSGF+N
Sbjct: 13  SKTRDLDKLLLRHGNLVDPGFVPGPGLRDDIRDYVRILVIGAGGLGCELLKDLALSGFRN 72

Query: 67  LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISF 126
           LEVIDMDRIEV+NLNRQFLFR+EDVGKPKAEVAAKRVMERVSGV IVPHF RIEDK+I F
Sbjct: 73  LEVIDMDRIEVTNLNRQFLFRIEDVGKPKAEVAAKRVMERVSGVEIVPHFSRIEDKEIEF 132

Query: 127 YNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII 186
           YNDFNII LGLDSIEAR YIN VAC FLEY  DD P+ ETIKPMVDGGTEGFKGHARVI+
Sbjct: 133 YNDFNIIALGLDSIEARKYINGVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVIL 192

Query: 187 PGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEH 246
           PGVTPCFECTI+LFPPQVKFPLCTLAETPR AAHCIEYAHLI+W+ VH GK+FDPD+PEH
Sbjct: 193 PGVTPCFECTIYLFPPQVKFPLCTLAETPRNAAHCIEYAHLIQWETVHRGKTFDPDEPEH 252

Query: 247 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK 306
           M+WVY EA++RAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKI S CSK
Sbjct: 253 MKWVYDEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSK 312

Query: 307 TLSNYLTY 314
           TL NYLTY
Sbjct: 313 TLVNYLTY 320

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807971|ref|XP_002871869.1| hypothetical protein ARALYDRAFT_909950 [Arabidopsis lyrata subsp. lyrata] gi|297317706|gb|EFH48128.1| hypothetical protein ARALYDRAFT_909950 [Arabidopsis lyrata subsp. lyrata]

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/308 (85%), Positives = 284/308 (92%)

Query: 7   SRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKN 66
           S++RDLDKLLLR GNLV P F PG +LRDD+++Y RILVVGAGGLGCELLKDLALSGF+N
Sbjct: 13  SKTRDLDKLLLRHGNLVDPGFFPGPDLRDDIRDYVRILVVGAGGLGCELLKDLALSGFRN 72

Query: 67  LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISF 126
           L+VIDMDRIEV+NLNRQFLFR+EDVGKPKAEVAAKRVMERVSGV IVPHF RIEDK+I F
Sbjct: 73  LDVIDMDRIEVTNLNRQFLFRLEDVGKPKAEVAAKRVMERVSGVEIVPHFSRIEDKEIEF 132

Query: 127 YNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII 186
           Y+DFNII LGLDSIEAR YIN VAC FLEY  DD P+ ETIKPMVDGGTEGFKGHARVI+
Sbjct: 133 YSDFNIIALGLDSIEARKYINGVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVIL 192

Query: 187 PGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEH 246
           PGVTPCFECTI+LFPPQVKFPLCTLAETPR AAHCIEYAHLI+W+ VH GK+FDPD+PEH
Sbjct: 193 PGVTPCFECTIYLFPPQVKFPLCTLAETPRNAAHCIEYAHLIQWEAVHHGKTFDPDEPEH 252

Query: 247 MQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK 306
           M+WVY EA++RAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKI S CSK
Sbjct: 253 MKWVYDEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSK 312

Query: 307 TLSNYLTY 314
           TL NYLTY
Sbjct: 313 TLVNYLTY 320

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
TAIR|locus:2182172	454	ECR1 "E1 C-terminal related 1"	0.899	0.649	0.803	4.5e-130
UNIPROTKB|E1BT61	463	UBA3 "Uncharacterized protein"	0.899	0.637	0.531	9.4e-82
RGD|621084	462	Uba3 "ubiquitin-like modifier	0.899	0.638	0.525	4.1e-81
UNIPROTKB|Q99MI7	462	Uba3 "NEDD8-activating enzyme	0.899	0.638	0.525	4.1e-81
MGI|MGI:1341217	462	Uba3 "ubiquitin-like modifier	0.899	0.638	0.521	5.2e-81
UNIPROTKB|Q0P5I7	463	UBA3 "Ubiquitin-like modifier	0.899	0.637	0.518	1.1e-80
UNIPROTKB|Q8TBC4	463	UBA3 "NEDD8-activating enzyme	0.899	0.637	0.518	1.1e-80
UNIPROTKB|E2QZL9	449	UBA3 "Uncharacterized protein"	0.899	0.657	0.518	1.8e-80
UNIPROTKB|E2R4G8	463	UBA3 "Uncharacterized protein"	0.899	0.637	0.518	1.8e-80
UNIPROTKB|F6Y460	472	UBA3 "Uncharacterized protein"	0.899	0.625	0.518	1.8e-80

TAIR|locus:2182172 ECR1 "E1 C-terminal related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1276 (454.2 bits), Expect = 4.5e-130, P = 4.5e-130
 Identities = 237/295 (80%), Positives = 255/295 (86%)

Query:    20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSN 79
             GNLV P F PG  LRDD+++Y RILV+GAGGLGCELLKDLALSGF+NLEVIDMDRIEV+N
Sbjct:    26 GNLVDPGFVPGPGLRDDIRDYVRILVIGAGGLGCELLKDLALSGFRNLEVIDMDRIEVTN 85

Query:    80 LNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDS 139
             LNRQFLFR+EDVGKPKAEVAAKRVMERVSGV IVPHF RIEDK+I FYNDFNII LGLDS
Sbjct:    86 LNRQFLFRIEDVGKPKAEVAAKRVMERVSGVEIVPHFSRIEDKEIEFYNDFNIIALGLDS 145

Query:   140 IEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWL 199
             IEAR YIN VAC FLEY  DD P+ ETIKPMVDGGTEGFKGHARVI+PGVTPCFECTI+L
Sbjct:   146 IEARKYINGVACGFLEYNEDDTPKRETIKPMVDGGTEGFKGHARVILPGVTPCFECTIYL 205

Query:   200 FPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAE 259
             FPPQVKFPLCTLAETPR AAHCIEYAHLI+W+ VH GK+FDPD+PEHM+WVY EA++RAE
Sbjct:   206 FPPQVKFPLCTLAETPRNAAHCIEYAHLIQWETVHRGKTFDPDEPEHMKWVYDEAIRRAE 265

Query:   260 LFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
             LFGIPGVTYSLTQGVVK                CALETLKI S CSKTL NYLTY
Sbjct:   266 LFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIVSACSKTLVNYLTY 320

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA;IDA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0045116 "protein neddylation" evidence=IEA;TAS

GO:0019781 "NEDD8 activating enzyme activity" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=NAS

UNIPROTKB|E1BT61 UBA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
 Identities = 159/299 (53%), Positives = 203/299 (67%)

Query:    19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
             +G    P FEPGT+  D L    ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct:    48 SGPFTHPDFEPGTQALDFLLSTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 107

Query:    79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
             NLNRQFLFR +DVG+PKAEVAA+ +  R+    +V +F +I+D D SFY  F+IIV GLD
Sbjct:   108 NLNRQFLFRPKDVGRPKAEVAAEFLNSRIPSCAVVAYFKKIQDMDESFYRQFHIIVCGLD 167

Query:   139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
             SI AR +IN +  SFL YE D      +I P++DGGTEGFKG+ARVIIPG+T C ECT+ 
Sbjct:   168 SIIARRWINGMLMSFLRYE-DGVLDPSSIIPLIDGGTEGFKGNARVIIPGMTACVECTLE 226

Query:   199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
             L+PPQV FP+CT+A  PR   HCIEY  +++W +      G + D DDPEH+QW+Y +++
Sbjct:   227 LYPPQVNFPMCTIASMPRLPEHCIEYVRILQWPKEQPFGEGVALDGDDPEHIQWIYQKSL 286

Query:   256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
             +RA  F I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct:   287 ERASQFNIKGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 345

GO:0005524 "ATP binding" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0045116 "protein neddylation" evidence=IEA

RGD|621084 Uba3 "ubiquitin-like modifier activating enzyme 3" [Rattus norvegicus (taxid:10116)]

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 157/299 (52%), Positives = 203/299 (67%)

Query:    19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
             +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct:    48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 107

Query:    79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
             NLNRQFLFR +DVG+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLD
Sbjct:   108 NLNRQFLFRPKDVGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 167

Query:   139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
             SI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ 
Sbjct:   168 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 226

Query:   199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
             L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ ++V
Sbjct:   227 LYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGDGVPLDGDDPEHIQWIFQKSV 286

Query:   256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
             +RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct:   287 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 345

GO:0000278 "mitotic cell cycle" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0007113 "endomitotic cell cycle" evidence=IEA;ISO

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IPI

GO:0019781 "NEDD8 activating enzyme activity" evidence=IMP;IDA

GO:0045116 "protein neddylation" evidence=IEA;TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=ISO;IMP

GO:0051726 "regulation of cell cycle" evidence=IEA;ISO

UNIPROTKB|Q99MI7 Uba3 "NEDD8-activating enzyme E1 catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 157/299 (52%), Positives = 203/299 (67%)

Query:    19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
             +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct:    48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 107

Query:    79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
             NLNRQFLFR +DVG+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLD
Sbjct:   108 NLNRQFLFRPKDVGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 167

Query:   139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
             SI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ 
Sbjct:   168 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 226

Query:   199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
             L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ ++V
Sbjct:   227 LYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGDGVPLDGDDPEHIQWIFQKSV 286

Query:   256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
             +RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct:   287 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 345

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

MGI|MGI:1341217 Uba3 "ubiquitin-like modifier activating enzyme 3" [Mus musculus (taxid:10090)]

 Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
 Identities = 156/299 (52%), Positives = 203/299 (67%)

Query:    19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
             +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct:    48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 107

Query:    79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
             NLNRQFLFR +DVG+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLD
Sbjct:   108 NLNRQFLFRPKDVGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 167

Query:   139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
             SI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ 
Sbjct:   168 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 226

Query:   199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
             L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ +++
Sbjct:   227 LYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGDGVPLDGDDPEHIQWIFQKSI 286

Query:   256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
             +RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct:   287 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 345

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000278 "mitotic cell cycle" evidence=IMP

GO:0003824 "catalytic activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007113 "endomitotic cell cycle" evidence=IMP

GO:0008152 "metabolic process" evidence=TAS

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=ISO

GO:0019781 "NEDD8 activating enzyme activity" evidence=ISO;TAS

GO:0045116 "protein neddylation" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

GO:0051726 "regulation of cell cycle" evidence=IMP

UNIPROTKB|Q0P5I7 UBA3 "Ubiquitin-like modifier activating enzyme 3" [Bos taurus (taxid:9913)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 155/299 (51%), Positives = 203/299 (67%)

Query:    19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
             +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct:    48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 107

Query:    79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
             NLNRQFLFR +DVG+PKAEVAA+ + +R+   N+VPHF +I+D + +FY  F+IIV GLD
Sbjct:   108 NLNRQFLFRPKDVGRPKAEVAAEFLNDRIPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 167

Query:   139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
             SI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ 
Sbjct:   168 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 226

Query:   199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
             L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDP+H+QW++ +A+
Sbjct:   227 LYPPQVNFPMCTIASMPRLPEHCIEYVRILQWPKEQPFGEGVPLDGDDPDHIQWIFQKAL 286

Query:   256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
             +RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct:   287 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 345

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0007113 "endomitotic cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0045116 "protein neddylation" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q8TBC4 UBA3 "NEDD8-activating enzyme E1 catalytic subunit" [Homo sapiens (taxid:9606)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 155/299 (51%), Positives = 203/299 (67%)

Query:    19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
             +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct:    48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 107

Query:    79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
             NLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLD
Sbjct:   108 NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 167

Query:   139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
             SI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ 
Sbjct:   168 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 226

Query:   199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
             L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ +++
Sbjct:   227 LYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 286

Query:   256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
             +RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct:   287 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 345

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007113 "endomitotic cell cycle" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA

GO:0019781 "NEDD8 activating enzyme activity" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0045116 "protein neddylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0006508 "proteolysis" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|E2QZL9 UBA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
 Identities = 155/299 (51%), Positives = 203/299 (67%)

Query:    19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
             +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct:    34 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 93

Query:    79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
             NLNRQFLFR +DVG+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLD
Sbjct:    94 NLNRQFLFRPKDVGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 153

Query:   139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
             SI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ 
Sbjct:   154 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 212

Query:   199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
             L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDP+H+QW++ +++
Sbjct:   213 LYPPQVNFPMCTIASMPRLPEHCIEYVRILQWPKEQPFGEGVPLDGDDPDHIQWIFQKSL 272

Query:   256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
             +RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct:   273 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 331

GO:0045116 "protein neddylation" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2R4G8 UBA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
 Identities = 155/299 (51%), Positives = 203/299 (67%)

Query:    19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
             +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct:    48 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 107

Query:    79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
             NLNRQFLFR +DVG+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLD
Sbjct:   108 NLNRQFLFRPKDVGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 167

Query:   139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
             SI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ 
Sbjct:   168 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 226

Query:   199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
             L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDP+H+QW++ +++
Sbjct:   227 LYPPQVNFPMCTIASMPRLPEHCIEYVRILQWPKEQPFGEGVPLDGDDPDHIQWIFQKSL 286

Query:   256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
             +RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct:   287 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 345

GO:0051726 "regulation of cell cycle" evidence=IEA

GO:0007113 "endomitotic cell cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0045116 "protein neddylation" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F6Y460 UBA3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 808 (289.5 bits), Expect = 1.8e-80, P = 1.8e-80
 Identities = 155/299 (51%), Positives = 203/299 (67%)

Query:    19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
             +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct:    57 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 116

Query:    79 NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
             NLNRQFLFR +DVG+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLD
Sbjct:   117 NLNRQFLFRPKDVGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 176

Query:   139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
             SI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ 
Sbjct:   177 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 235

Query:   199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
             L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDP+H+QW++ +++
Sbjct:   236 LYPPQVNFPMCTIASMPRLPEHCIEYVRILQWPKEQPFGEGVPLDGDDPDHIQWIFQKSL 295

Query:   256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
             +RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct:   296 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 354

GO:0045116 "protein neddylation" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0008641 "small protein activating enzyme activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q99MI7	UBA3_RAT	6, ., 3, ., 2, ., -	0.5548	0.9329	0.6623	yes	no
Q5R4A0	UBA3_PONAB	6, ., 3, ., 2, ., -	0.5451	0.9329	0.6609	yes	no
Q19360	UBA3_CAEEL	6, ., 3, ., 2, ., -	0.5619	0.9512	0.7255	yes	no
Q9V6U8	UBA3_DROME	6, ., 3, ., 2, ., -	0.5434	0.9451	0.6888	yes	no
Q8TBC4	UBA3_HUMAN	6, ., 3, ., 2, ., -	0.5483	0.9329	0.6609	yes	no
O65041	UBA3_ARATH	6, ., 3, ., 2, ., -	0.8538	0.9390	0.6784	yes	no
Q7ZVX6	UBA3_DANRE	6, ., 3, ., 2, ., -	0.5559	0.9146	0.6493	yes	no
Q54QG9	UBA3_DICDI	6, ., 3, ., 2, ., -	0.5279	0.9542	0.7081	yes	no
Q8C878	UBA3_MOUSE	6, ., 3, ., 2, ., -	0.5516	0.9329	0.6623	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_VIII000875	hypothetical protein (449 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_XIV000426	hypothetical protein (521 aa)				•	•		•		0.662

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	328
cd01488	291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	0.0
cd01484	234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	2e-98
cd01489	312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	7e-78
cd01490	435	cd01490, Ube1_repeat2, Ubiquitin activating enzyme	8e-53
pfam00899	134	pfam00899, ThiF, ThiF family	9e-45
COG0476	254	COG0476, ThiF, Dinucleotide-utilizing enzymes invo	7e-43
cd01483	143	cd01483, E1_enzyme_family, Superfamily of activati	2e-40
cd00757	228	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	4e-40
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	5e-35
pfam02134	66	pfam02134, UBACT, Repeat in ubiquitin-activating (	4e-28
TIGR02356	202	TIGR02356, adenyl_thiF, thiazole biosynthesis aden	5e-26
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	2e-21
PRK05690	245	PRK05690, PRK05690, molybdopterin biosynthesis pro	1e-20
PRK08644	212	PRK08644, PRK08644, thiamine biosynthesis protein	2e-18
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	5e-18
PRK05600	370	PRK05600, PRK05600, thiamine biosynthesis protein	7e-18
PRK08328	231	PRK08328, PRK08328, hypothetical protein; Provisio	8e-18
PRK12475	338	PRK12475, PRK12475, thiamine/molybdopterin biosynt	5e-17
cd01487	174	cd01487, E1_ThiF_like, E1_ThiF_like	6e-17
PRK07688	339	PRK07688, PRK07688, thiamine/molybdopterin biosynt	2e-16
TIGR02355	240	TIGR02355, moeB, molybdopterin synthase sulfurylas	5e-16
TIGR02354	200	TIGR02354, thiF_fam2, thiamine biosynthesis protei	2e-15
COG1179	263	COG1179, COG1179, Dinucleotide-utilizing enzymes i	2e-14
cd01492	197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	2e-14
cd00755	231	cd00755, YgdL_like, Family of activating enzymes (	1e-13
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	3e-13
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	7e-13
cd01491	286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	2e-12
cd01493	425	cd01493, APPBP1_RUB, Ubiquitin activating enzyme (	3e-11
cd01486	307	cd01486, Apg7, Apg7 is an E1-like protein, that ac	1e-10
pfam10585	44	pfam10585, UBA_e1_thiolCys, Ubiquitin-activating e	4e-10
cd01485	198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	9e-10
PRK15116	268	PRK15116, PRK15116, sulfur acceptor protein CsdL;	5e-09
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	8e-08
PRK14851	679	PRK14851, PRK14851, hypothetical protein; Provisio	1e-06
TIGR01381	664	TIGR01381, E1_like_apg7, E1-like protein-activatin	1e-06
PRK08223	287	PRK08223, PRK08223, hypothetical protein; Validate	2e-06
TIGR03736	244	TIGR03736, PRTRC_ThiF, PRTRC system ThiF family pr	3e-05
PRK14852	989	PRK14852, PRK14852, hypothetical protein; Provisio	6e-05
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	3e-04
PRK04965	377	PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu	0.001
PRK07877	722	PRK07877, PRK07877, hypothetical protein; Provisio	0.001

>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3

 Score =  518 bits (1336), Expect = 0.0
 Identities = 180/273 (65%), Positives = 215/273 (78%), Gaps = 5/273 (1%)

Query: 42  RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAK 101
           +ILV+GAGGLGCELLK+LALSGF+N+ VIDMD I+VSNLNRQFLFR +D+GKPKAEVAAK
Sbjct: 1   KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAK 60

Query: 102 RVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDK 161
            V +RV GVN+ PHF +I+DKD  FY  FNII+ GLDSIEAR +IN    S L YE    
Sbjct: 61  FVNDRVPGVNVTPHFGKIQDKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYED--- 117

Query: 162 PREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHC 221
              E+I P++DGGTEGFKGHARVI+PG+T C EC++ LFPPQV FPLCT+A TPR   HC
Sbjct: 118 --PESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFPPQVTFPLCTIANTPRLPEHC 175

Query: 222 IEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPA 281
           IEYA LI+W +       D DDPEH++W+Y +A++RA  F I GVTYSLTQGVVK IIPA
Sbjct: 176 IEYASLIQWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPA 235

Query: 282 IASTNAIISAACALETLKIASGCSKTLSNYLTY 314
           +ASTNAII+AAC LE LKIA+ C + L+NYL Y
Sbjct: 236 VASTNAIIAAACCLEALKIATDCYENLNNYLMY 268

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291

>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like

 Score =  290 bits (743), Expect = 2e-98
 Identities = 124/260 (47%), Positives = 175/260 (67%), Gaps = 29/260 (11%)

Query: 42  RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAK 101
           ++L+VGAGG+GCELLK+LAL GF  + VIDMD I+VSNLNRQFLFR +D+G+PK+EVAA+
Sbjct: 1   KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAE 60

Query: 102 RVMERVSGVNIVPHFCRIEDKDI---SFYNDFNIIVLGLDSIEARSYINAVACSFLEYET 158
            V +R     +VP+  ++  +     +F+  F+IIV  LD+I AR Y+N +   FL    
Sbjct: 61  AVNDRNPNCKVVPYQNKVGPEQDFNDTFFEQFHIIVNALDNIIARRYVNGM-LIFLI--- 116

Query: 159 DDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTA 218
                     P+++ GTEGFKG+A+VI+PG+T C ECT  L+PPQ  FP+CT+A  PR  
Sbjct: 117 ---------VPLIESGTEGFKGNAQVILPGMTECIECT--LYPPQKNFPMCTIASMPRLP 165

Query: 219 AHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNI 278
            HCIE+A +++W           DDPEH+Q+++  + +RA  + I GVTY LT+GV   I
Sbjct: 166 EHCIEWARMLQW-----------DDPEHIQFIFQASNERASQYNIRGVTYFLTKGVAGRI 214

Query: 279 IPAIASTNAIISAACALETL 298
           IPA+A+TNA+++  CALE  
Sbjct: 215 IPAVATTNAVVAGVCALEVF 234

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1. Length = 234

>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2

 Score =  240 bits (614), Expect = 7e-78
 Identities = 110/312 (35%), Positives = 161/312 (51%), Gaps = 56/312 (17%)

Query: 42  RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAK 101
           ++LVVGAGG+GCELLK+L L+GF  + +ID+D I++SNLNRQFLFR + VGK KA+VA +
Sbjct: 1   KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKE 60

Query: 102 RVMERVSGVNIVPHFCRIEDKD--ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETD 159
            V+     V IV +   I+D D  + F+  F+++   LD++ AR ++N + C   +    
Sbjct: 61  AVLSFNPNVKIVAYHANIKDPDFNVEFFKQFDLVFNALDNLAARRHVNKM-CLAAD---- 115

Query: 160 DKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAA 219
                    P+++ GT GF G  +VI  G T C+EC          FP+CT+  TP    
Sbjct: 116 --------VPLIESGTTGFLGQVQVIKKGKTECYECQPK--ETPKTFPVCTIRSTPSQPI 165

Query: 220 HCIEYA--------HLIK-----------------------WDEVHSGKSFDPDDPEHMQ 248
           HCI +A         + K                       W E+    +FD DD + + 
Sbjct: 166 HCIVWAKSLFFLFNKVFKDDIERLLSMEELWKTRKPPVPLSWKEL----TFDKDDQDALD 221

Query: 249 WVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASG----C 304
           +V + A  R+ +FGIP  +    + +  NIIPAIA+TNAII+    LE LK+ SG    C
Sbjct: 222 FVAAAANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQC 281

Query: 305 SKTLSNYLTYAQ 316
                N     +
Sbjct: 282 RTVFLNLQPNRR 293

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 312

>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2

 Score =  179 bits (455), Expect = 8e-53
 Identities = 107/382 (28%), Positives = 159/382 (41%), Gaps = 116/382 (30%)

Query: 42  RILVVGAGGLGCELLKDLALSGFKN-----LEVIDMDRIEVSNLNRQFLFRMEDVGKPKA 96
           ++ +VGAG +GCELLK+ AL G        + V DMD IE SNLNRQFLFR  DVGKPK+
Sbjct: 1   KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKS 60

Query: 97  EVAAKRVMERVSGVNIVPHFCRI--EDKDI---SFYNDFNIIVLGLDSIEARSYINAVAC 151
           EVAA  V      + I     R+  E + I    F+   + +   LD+++AR Y++    
Sbjct: 61  EVAAAAVKAMNPDLKITALQNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCV 120

Query: 152 SFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTL 211
            +              KP+++ GT G KG+ +V+IP +T  +  +    PP+   PLCTL
Sbjct: 121 YYR-------------KPLLESGTLGTKGNTQVVIPHLTESYSSS--RDPPEKSIPLCTL 165

Query: 212 AETPRTAAHCIEYA---------------------HLIKWDEVH---------------- 234
              P    H I++A                       ++W  +                 
Sbjct: 166 KNFPNAIEHTIQWARDEFEGLFKQPPENVNQYLFEDCVRWARLLFEKYFNNNIKQLLHNF 225

Query: 235 -------SGKSF-------------DPDDPEHMQWVYSEAVKRAELFGIPG--------- 265
                   G  F             D ++P H+ +V + A   AE++GIPG         
Sbjct: 226 PPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIPGFEKDDDTNF 285

Query: 266 ----VT---------YSL-------TQGVVKNIIPAIASTNAIISAACALETLKIASGCS 305
               +T         YS+       T+ +   IIPAIA+T A ++    LE  K+  G  
Sbjct: 286 HMDFITAASNLRARNYSIPPADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDG-- 343

Query: 306 KTLSNYLTYAQLSFFASAMQFF 327
                 L   + +F   A+ FF
Sbjct: 344 ---KRPLEAYKNAFLNLALPFF 362

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. Length = 435

>gnl|CDD|216180 pfam00899, ThiF, ThiF family

 Score =  149 bits (378), Expect = 9e-45
 Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 14/146 (9%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           +R+LVVGAGGLG    + LA +G   L ++D D +E+SNLNRQ LF   D+GKPKAEVA 
Sbjct: 2   SRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVAK 61

Query: 101 KRVMERVSGVNIVPHFCRIEDKDI-SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETD 159
           +R+      V +  +  R+  +++       +++V  LD+  AR  +N            
Sbjct: 62  ERLRAINPDVEVEAYPERLTPENLEELLKGVDLVVDALDNFAARYLLNDACV-------- 113

Query: 160 DKPREETIKPMVDGGTEGFKGHARVI 185
                +   P++  G  GF G   VI
Sbjct: 114 -----KRGIPLISAGALGFDGQVTVI 134

This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family. Length = 134

>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

 Score =  148 bits (375), Expect = 7e-43
 Identities = 69/164 (42%), Positives = 88/164 (53%), Gaps = 15/164 (9%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           +R+LVVGAGGLG    K LAL+G   L ++D D +E+SNL RQFLF   DVGKPKAEVAA
Sbjct: 31  SRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVAA 90

Query: 101 KRVMERVSGVNIVP-HFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETD 159
           K + +    V +V       E+        F++++   D+ E R  IN  AC  L     
Sbjct: 91  KALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLIND-ACVKLG---- 145

Query: 160 DKPREETIKPMVDGGTEGFKGHARVIIPG-VTPCFECTIWLFPP 202
                    P+V GG  GF+G   VIIPG  TPC+ C     PP
Sbjct: 146 --------IPLVHGGAIGFEGQVTVIIPGDKTPCYRCLFPEKPP 181

Length = 254

>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

 Score =  138 bits (349), Expect = 2e-40
 Identities = 58/148 (39%), Positives = 81/148 (54%), Gaps = 14/148 (9%)

Query: 42  RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAK 101
           R+L+VG GGLG E+  +LA SG   + +ID D +E+SNLNRQFL R  D+GKPKAEVAA+
Sbjct: 1   RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAAR 60

Query: 102 RVMERVSGVNIVPHFCRI-EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDD 160
           R+ E   GVN+      I ED    F +  ++++  +D+I  R  +N             
Sbjct: 61  RLNELNPGVNVTAVPEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACK--------- 111

Query: 161 KPREETIKPMVDGGTEGFKGHARVIIPG 188
               E   P++D G  G  G  +VI  G
Sbjct: 112 ----ELGIPVIDAGGLGLGGDIQVIDIG 135

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. Length = 143

>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA

 Score =  139 bits (354), Expect = 4e-40
 Identities = 61/172 (35%), Positives = 86/172 (50%), Gaps = 19/172 (11%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           AR+LVVGAGGLG    + LA +G   L ++D D +E+SNL RQ L    DVG+PKAE AA
Sbjct: 22  ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAA 81

Query: 101 KRVMERVSGVNIVPHFCRIEDKDI-SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETD 159
           +R+      V I  +  R++ ++       +++++   D+   R  IN            
Sbjct: 82  ERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDAC--------- 132

Query: 160 DKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFP--PQVKFPLC 209
                +  KP+V G   GF+G   V IPG  PC+ C   LFP  P    P C
Sbjct: 133 ----VKLGKPLVSGAVLGFEGQVTVFIPGEGPCYRC---LFPEPPPPGVPSC 177

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). . Length = 228

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score =  135 bits (340), Expect = 5e-35
 Identities = 71/206 (34%), Positives = 108/206 (52%), Gaps = 26/206 (12%)

Query: 30  GTELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQF 84
           G   +  LQ    I +VG G +GCE+LK+ AL G        + V D D IE SNLNRQF
Sbjct: 410 GDTFQQKLQN-LNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQF 468

Query: 85  LFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI--EDKDI---SFYNDFNIIVLGLDS 139
           LFR   +GKPK+  AA   ++    + I  H  R+  E + I    FY   ++++  LD+
Sbjct: 469 LFRPHHIGKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDN 528

Query: 140 IEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWL 199
           +EAR Y+++   +FL             KP+++ GT G KG+ +V++P +T  +  +   
Sbjct: 529 VEARRYVDSRCLAFL-------------KPLLESGTLGTKGNTQVVVPHLTESYGSS--R 573

Query: 200 FPPQVKFPLCTLAETPRTAAHCIEYA 225
            PP+ + P CTL   P    H I++A
Sbjct: 574 DPPEKEIPFCTLKSFPAAIEHTIQWA 599

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|202124 pfam02134, UBACT, Repeat in ubiquitin-activating (UBA) protein

 Score =  103 bits (259), Expect = 4e-28
 Identities = 31/66 (46%), Positives = 43/66 (65%)

Query: 238 SFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALET 297
            FD DD +H+ +VY+ A  RA+ +GIP       +G+  NIIPAIA+TNAI++    LE 
Sbjct: 1   EFDKDDDDHLDFVYAAANLRAQNYGIPPADRFDVKGIAGNIIPAIATTNAIVAGIVVLEL 60

Query: 298 LKIASG 303
           LKI +G
Sbjct: 61  LKILTG 66

Length = 66

>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E

 Score =  102 bits (256), Expect = 5e-26
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 16/165 (9%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           + +L++GAGGLG      LA +G   + ++D D +++SNL RQ LF  EDVG+PK EVAA
Sbjct: 22  SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAA 81

Query: 101 KRVMERVSGVNIVPHFCRIEDKDIS-FYNDFNIIVLGLDSIEARSYINAVACSFLEYETD 159
           +R+ E  S + +     R+  +++    N+ ++++   D+   R  IN            
Sbjct: 82  QRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC--------- 132

Query: 160 DKPREETIKPMVDGGTEGFKGHARVIIPGV-TPCFECTIWLFPPQ 203
                    P++     GF G   V  PG   PC  C ++     
Sbjct: 133 ----VALGTPLISAAVVGFGGQLMVFDPGGEGPCLRC-LFPDIAD 172

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 202

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 92.8 bits (231), Expect = 2e-21
 Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 22/179 (12%)

Query: 28  EPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFR 87
           E G E +  L E AR+L++GAGGLG      LA +G   L ++D D ++ SNL RQ L  
Sbjct: 124 EVGEEGQRRLLE-ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHT 182

Query: 88  MEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDI-SFYNDFNIIVLGLDSIEARSYI 146
            + VG+PK + AA+R+      V +     R+   ++ +   D +++V G D+   R  +
Sbjct: 183 EDRVGQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLL 242

Query: 147 NAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVT----PCFECTIWLFP 201
           N  AC  L             KP+V G    F+G   V   G      PC+ C   LFP
Sbjct: 243 ND-ACVKLG------------KPLVYGAVFRFEGQVSVFDAGRQRGQAPCYRC---LFP 285

Length = 376

>gnl|CDD|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional

 Score = 88.7 bits (221), Expect = 1e-20
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 15/165 (9%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           AR+LVVG GGLGC   + LA +G   L ++D D + +SNL RQ L     +G+PK E A 
Sbjct: 33  ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESAR 92

Query: 101 KRVMERVSGVNIVPHFCRIEDKDI-SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETD 159
             +      + I     R++D ++ +     ++++   D++  R+ +N  AC        
Sbjct: 93  AALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNR-AC-------- 143

Query: 160 DKPREETIKPMVDGGTEGFKGHARVIIPGV-TPCFECTIWLFPPQ 203
                   KP+V G     +G   V       PC+ C   LF   
Sbjct: 144 ----FAAKKPLVSGAAIRMEGQVTVFTYQDDEPCYRCLSRLFGEN 184

Length = 245

>gnl|CDD|236320 PRK08644, PRK08644, thiamine biosynthesis protein ThiF; Provisional

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 8/110 (7%)

Query: 41  ARILVVGAGGLG--CELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98
           A++ + GAGGLG    +   LA SG  NL+++D D +E SNLNRQ  F +  +G PK E 
Sbjct: 29  AKVGIAGAGGLGSNIAVA--LARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVE- 84

Query: 99  AAKRVMERVS-GVNIVPHFCRIEDKDI-SFYNDFNIIVLGLDSIEARSYI 146
           A K  +  ++  V I  H  +I++ +I   + D +I+V   D+ E ++ +
Sbjct: 85  ALKENLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAML 134

Length = 212

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 83.6 bits (207), Expect = 5e-18
 Identities = 59/210 (28%), Positives = 89/210 (42%), Gaps = 38/210 (18%)

Query: 25  PTFEPGTEL-RDDLQEY-------------------ARILVVGAGGLGCELLKDLALSGF 64
           P  EP  EL RD++  Y                   AR+LV+GAGGLG   L  LA +G 
Sbjct: 7   PLVEPAAELTRDEVARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGV 66

Query: 65  KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE-DKD 123
             L +++ D ++ SNL RQ +    DVG+ KA+ A   ++E    VN+  H  R++    
Sbjct: 67  GTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNA 126

Query: 124 ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHAR 183
           +  ++ +++I+ G D+   R  +N  A                 KP V G    F+G A 
Sbjct: 127 VELFSQYDLILDGTDNFATRYLVND-AAVLAG------------KPYVWGSIYRFEGQAS 173

Query: 184 VI----IPGVTPCFECTIWLFPPQVKFPLC 209
           V       G+   +       PP    P C
Sbjct: 174 VFWEDAPDGLGLNYRDLYPEPPPPGMVPSC 203

Length = 392

>gnl|CDD|235528 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated

 Score = 83.0 bits (205), Expect = 7e-18
 Identities = 40/100 (40%), Positives = 63/100 (63%), Gaps = 1/100 (1%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           AR+LV+GAGGLGC  ++ LA +G   + +ID D ++VSN++RQ LF   DVG+PK EVAA
Sbjct: 42  ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAA 101

Query: 101 KRVMERVSGVNIVPHFCRIE-DKDISFYNDFNIIVLGLDS 139
           +R+ E    + +     R+  +  +   N  ++++ G DS
Sbjct: 102 ERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDS 141

Length = 370

>gnl|CDD|169382 PRK08328, PRK08328, hypothetical protein; Provisional

 Score = 80.6 bits (199), Expect = 8e-18
 Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 16/163 (9%)

Query: 30  GTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRME 89
           G E ++ L++ A++ VVG GGLG  +   LA +G   + +ID    E+SNLNRQ L   E
Sbjct: 18  GVEGQEKLKK-AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEE 76

Query: 90  DVGKPKAEVAAKRVMERV-SGVNIVPHFCRIEDKDIS-FYNDFNIIVLGLDSIEARSYIN 147
           D+GK    ++AK  +ER  S + I     R+ +++I       ++IV  LD+ E R    
Sbjct: 77  DLGKNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETR---- 132

Query: 148 AVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVT 190
                   Y  DD   ++ I P+V G  EG  G    I+PG T
Sbjct: 133 --------YLLDDYAHKKGI-PLVHGAVEGTYGQVTTIVPGKT 166

Length = 231

>gnl|CDD|183547 PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

 Score = 80.2 bits (198), Expect = 5e-17
 Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 16/156 (10%)

Query: 43  ILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVG--KPKAEVAA 100
           +L+VGAG LG    + L  +G   L + D D +E SNL RQ L+  ED    KPKA  A 
Sbjct: 27  VLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAK 86

Query: 101 KRVMERVSGVNIVPHFCRIEDKDI-SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETD 159
           + + +  S V IVP    +  +++     + ++I+   D+ + R  IN ++    +Y   
Sbjct: 87  EHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLS---QKYNI- 142

Query: 160 DKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFEC 195
                    P + GG  G  G    IIPG TPC  C
Sbjct: 143 ---------PWIYGGCVGSYGVTYTIIPGKTPCLRC 169

Length = 338

>gnl|CDD|238764 cd01487, E1_ThiF_like, E1_ThiF_like

 Score = 76.7 bits (189), Expect = 6e-17
 Identities = 35/107 (32%), Positives = 62/107 (57%), Gaps = 4/107 (3%)

Query: 42  RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAK 101
           ++ + GAGGLG  +   LA SG  NL+++D D +E SNLNRQ  + +  +G+PK E A K
Sbjct: 1   KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQ-YFLSQIGEPKVE-ALK 58

Query: 102 RVMERVS-GVNIVPHFCRIEDKDI-SFYNDFNIIVLGLDSIEARSYI 146
             +  ++  V I     +I++ ++   + D +I+V   D+ E ++ +
Sbjct: 59  ENLREINPFVKIEAINIKIDENNLEGLFGDCDIVVEAFDNAETKAML 105

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 174

>gnl|CDD|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

 Score = 78.5 bits (194), Expect = 2e-16
 Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 20/180 (11%)

Query: 27  FEP-GTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFL 85
           F P G E +  L+E   +L++GAG LG    + L  +G   + ++D D +E SNL RQ L
Sbjct: 11  FSPIGEEGQQKLRE-KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQL 69

Query: 86  FRMEDVGK--PKAEVAAKRVMERV-SGVNIVPHFCRIEDKDI-SFYNDFNIIVLGLDSIE 141
           +   DV    PKA VAAK+ +E + S V +      +  +++       ++I+   D+ E
Sbjct: 70  YTESDVKNNLPKA-VAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFE 128

Query: 142 ARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFP 201
            R  +N  A    +Y            P + G   G  G +  IIPG TPC  C +   P
Sbjct: 129 TRFIVNDAA---QKYGI----------PWIYGACVGSYGLSYTIIPGKTPCLRCLLQSIP 175

Length = 339

>gnl|CDD|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB

 Score = 76.0 bits (187), Expect = 5e-16
 Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 15/162 (9%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           +R+L+VG GGLGC   + LA +G  NL ++D D + +SNL RQ L    ++G+PK E A 
Sbjct: 25  SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAK 84

Query: 101 KRVMERVSGVNIVPHFCRIEDKDI-SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETD 159
             + +    + I P   +++D ++ +   + +I+V   D++E R+ +N   C        
Sbjct: 85  DALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLN-RQCF------- 136

Query: 160 DKPREETIKPMVDGGTEGFKGHARVII-PGVTPCFECTIWLF 200
                    P+V G     +G   V       PC+ C   LF
Sbjct: 137 -----AAKVPLVSGAAIRMEGQVSVFTYQDGEPCYRCLSRLF 173

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899) [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 240

>gnl|CDD|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2

 Score = 73.0 bits (179), Expect = 2e-15
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 6/133 (4%)

Query: 30  GTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRME 89
             ++   L++ A + + G GGLG  +  +LA +G   L ++D D +E SNLNRQ  ++  
Sbjct: 12  TPKIVQKLEQ-ATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQ-QYKAS 69

Query: 90  DVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDI-SFYNDFNIIVLGLDSIEARSYINA 148
            VG+PK E   + + E      I  +  +I +++I  F+ D +I+    D+ EA++ +  
Sbjct: 70  QVGEPKTEALKENISEINPYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAML-- 127

Query: 149 VACSFLEYETDDK 161
              + LE   D  
Sbjct: 128 -VNAVLEKYKDKY 139

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 200

>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 2/105 (1%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           A + VVG GG+G   ++ LA SG   + +IDMD + V+N NRQ    + D+GKPK EV  
Sbjct: 31  AHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMK 90

Query: 101 KRVMERVSGVNIVPHFCRIEDKDIS--FYNDFNIIVLGLDSIEAR 143
           +R+ +      +      I ++++       F+ ++  +DS+ A+
Sbjct: 91  ERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAK 135

Length = 263

>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 35/108 (32%), Positives = 57/108 (52%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           ARIL++G  GLG E+ K+L LSG  +L ++D   +   +L  QFL   ED+G+ +AE + 
Sbjct: 22  ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASL 81

Query: 101 KRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINA 148
           +R+      V +      I +K   F++ F+++V    S      IN 
Sbjct: 82  ERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINE 129

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. Length = 197

>gnl|CDD|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

 Score = 69.2 bits (170), Expect = 1e-13
 Identities = 39/108 (36%), Positives = 53/108 (49%), Gaps = 10/108 (9%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           A + VVG GG+G    + LA SG   L +ID D + VSNLNRQ    +  VGKPK EV A
Sbjct: 12  AHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMA 71

Query: 101 KRVMERVSGVN----IVPHFCRIEDKDISFYN--DFNIIVLGLDSIEA 142
               ER+  +N    +      +   +       D + +V  +DSI A
Sbjct: 72  ----ERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRA 115

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 231

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score = 69.8 bits (171), Expect = 3e-13
 Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 28/177 (15%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           A +L +G GGLG  LL  LA +G   + ++D D ++ SNL RQ +     VGKPK E A 
Sbjct: 39  ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAK 98

Query: 101 KRVMERVSGVNIVPHFCRIE--DKDISFYN------DFNIIVLGLDSIEARSYINAVACS 152
            R++E      I P+ C+++  +  +S  N       ++++V G D+   R  +N  AC 
Sbjct: 99  NRILE------INPY-CQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVND-ACV 150

Query: 153 FLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLC 209
            L             KP V G    F+G A V      P +       PP    P C
Sbjct: 151 LLN------------KPNVYGSIFRFEGQATVFNYEGGPNYRDLYPEPPPPGMVPSC 195

Length = 390

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 68.0 bits (166), Expect = 7e-13
 Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 1/104 (0%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           A++ V+GAGGLG   L  LA +G  ++ +ID D +++SNL+RQ +     VG+PKAE A 
Sbjct: 29  AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAR 88

Query: 101 KRVMERVSGVNIVPHFCRIE-DKDISFYNDFNIIVLGLDSIEAR 143
           + ++     V +     R+     +    D ++I+ G D+ + R
Sbjct: 89  EAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTR 132

Length = 355

>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           + +L+ G GGLG E+ K+L L+G K++ + D      S+L+ QF  R ED+GK +AE + 
Sbjct: 20  SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQ 79

Query: 101 KRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINA 148
            R+ E    V +                 F ++VL   S+E +  IN 
Sbjct: 80  ARLAELNPYVPVTVS---TGPLTTDELLKFQVVVLTDASLEDQLKINE 124

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. Length = 286

>gnl|CDD|238770 cd01493, APPBP1_RUB, Ubiquitin activating enzyme (E1) subunit APPBP1

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 3/99 (3%)

Query: 39  EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98
           E A + ++ A   G E+LK+L L G  +  ++D  +++  +L   F      +GK +AE 
Sbjct: 19  ESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEA 78

Query: 99  AAKRVME---RVSGVNIVPHFCRIEDKDISFYNDFNIIV 134
             + + E    V+G  +      + D D SF++ F +++
Sbjct: 79  TCELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVI 117

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Length = 425

>gnl|CDD|238763 cd01486, Apg7, Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 2/72 (2%)

Query: 42  RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV--GKPKAEVA 99
           + L++GAG LGC + ++L   G +++  +D  ++  SN  RQ LF  ED   GKPKAE A
Sbjct: 1   KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAA 60

Query: 100 AKRVMERVSGVN 111
           A+R+ E    ++
Sbjct: 61  AERLKEIFPSID 72

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. Length = 307

>gnl|CDD|192635 pfam10585, UBA_e1_thiolCys, Ubiquitin-activating enzyme active site

 Score = 54.1 bits (131), Expect = 4e-10
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 189 VTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH 234
           VT C+EC+    PP+   P+CTL   P T  HCIE+A    ++ + 
Sbjct: 1   VTECYECS--PDPPEKSIPVCTLRSFPSTPEHCIEWAR-DLFEGLF 43

Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2). This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP. Length = 44

>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like

 Score = 57.0 bits (138), Expect = 9e-10
 Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 19/163 (11%)

Query: 30  GTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRME 89
           G E ++ L+  A++L++GAG LG E+ K+L L+G  ++ ++D   +   +L   F    E
Sbjct: 10  GDEAQNKLRS-AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAE 68

Query: 90  DV--GKPKAEVAAKRVME---RVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARS 144
               G  +A  + + + E    V    +       +     +   F +++   ++ E  +
Sbjct: 69  VSNSGMNRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTA 128

Query: 145 YINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIP 187
            +N V             R+  I P +   T G  G+A    P
Sbjct: 129 KVNDVC------------RKHHI-PFISCATYGLIGYAFFDFP 158

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1. Length = 198

>gnl|CDD|185071 PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional

 Score = 56.0 bits (135), Expect = 5e-09
 Identities = 28/65 (43%), Positives = 40/65 (61%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           A I VVG GG+G    + LA +G   + +IDMD + V+N NRQ     ++VG  KAEV A
Sbjct: 31  AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMA 90

Query: 101 KRVME 105
           +R+ +
Sbjct: 91  ERIRQ 95

Length = 268

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 53.4 bits (128), Expect = 8e-08
 Identities = 22/63 (34%), Positives = 40/63 (63%)

Query: 43  ILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKR 102
           +L+ G GGLG E+ K+L L+G K++ + D ++ +  +L+  F    +DVG+ +AE   K+
Sbjct: 27  VLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKK 86

Query: 103 VME 105
           + E
Sbjct: 87  LAE 89

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|184853 PRK14851, PRK14851, hypothetical protein; Provisional

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 20/153 (13%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           A++ + G GG+G   L  +  +G     + D D+ E  N+NRQF  R+   G+PK  V  
Sbjct: 44  AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMK 103

Query: 101 KRVMERVSGVNIVPHFCRIEDKDIS-FYNDFNIIVLGLDSIEARSYINAVACSFLEYETD 159
           ++ +     + I P    I   ++  F +  ++++ GLD              F ++E  
Sbjct: 104 EQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLD--------------FFQFEIR 149

Query: 160 ----DKPREETIKPMVDGGTEGFKGHARVIIPG 188
               +  RE+ I P++  G  G+     V  P 
Sbjct: 150 RTLFNMAREKGI-PVITAGPLGYSSAMLVFTPQ 181

Length = 679

>gnl|CDD|233388 TIGR01381, E1_like_apg7, E1-like protein-activating enzyme Gsa7p/Apg7p

 Score = 49.9 bits (119), Expect = 1e-06
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 26/144 (18%)

Query: 32  ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV 91
           +L+ +     ++L++GAG LGC + + L   G +++  +D  ++  SN  RQ L   ED 
Sbjct: 330 DLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDC 389

Query: 92  ---GKPKAEVAAKRVME-----RVSGVNI-VP---HFCRIEDKDI-SFYNDF-------- 130
              G+ KAE A K +       + +G  + VP   H   I++KD+     D         
Sbjct: 390 LLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGH--PIDEKDVPELEKDIARLEQLIK 447

Query: 131 --NIIVLGLDSIEARSYINAVACS 152
             +++ L LDS EAR ++  V CS
Sbjct: 448 DHDVVFLLLDSREAR-WLPTVLCS 470

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. Length = 664

>gnl|CDD|181302 PRK08223, PRK08223, hypothetical protein; Validated

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 25/63 (39%), Positives = 34/63 (53%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           +R+ + G GG+G   L  LA  G     + D D  E+ N NRQ    M  +G+PKAEV A
Sbjct: 28  SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLA 87

Query: 101 KRV 103
           + V
Sbjct: 88  EMV 90

Length = 287

>gnl|CDD|163448 TIGR03736, PRTRC_ThiF, PRTRC system ThiF family protein

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 11/77 (14%)

Query: 37  LQEYARILVVGAGGLGCELLKDLA--------LSGFKNL--EVIDMDRIEVSNLNRQFLF 86
           L     +++VGAGG G +++  LA        L     L   V D D +  +N+ RQ  F
Sbjct: 8   LSRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AF 66

Query: 87  RMEDVGKPKAEVAAKRV 103
              DVG+ KA V   R+
Sbjct: 67  YPADVGQNKAIVLVNRL 83

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. Length = 244

>gnl|CDD|184854 PRK14852, PRK14852, hypothetical protein; Provisional

 Score = 44.3 bits (104), Expect = 6e-05
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 3/100 (3%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           +R+ + G GG+G   L  LA +G  N  + D D     NLNRQ+   +   G+ K +V  
Sbjct: 333 SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMT 392

Query: 101 KRVMERVSGVNI--VPHFCRIEDKDISFYNDFNIIVLGLD 138
           +R +     ++I   P     E  D +F  D +++V G+D
Sbjct: 393 ERALSVNPFLDIRSFPEGVAAETID-AFLKDVDLLVDGID 431

Length = 989

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 238 SFDPDDPE--HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACAL 295
           SF+ DD    H+ ++ + +  RA+ + I       T+ +   IIPAIA++ A +S    L
Sbjct: 805 SFEKDDDHNGHIDFITAASNLRAKNYSIEPADRFKTKFIAGKIIPAIATSTATVSGLVCL 864

Query: 296 ETLKIASGCSK 306
           E +K+  G  K
Sbjct: 865 ELIKVTDGGYK 875

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 11/45 (24%)

Query: 37  LQEYA----------RILVVGAGGLGCELLKDLALSGFKNLEVID 71
            QEY           R+LVVG G +G EL  DL  +G K + ++D
Sbjct: 128 QQEYRAAETQLRDAQRVLVVGGGLIGTELAMDLCRAG-KAVTLVD 171

Length = 377

>gnl|CDD|236122 PRK07877, PRK07877, hypothetical protein; Provisional

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 6/50 (12%)

Query: 59  LALSG-FKNLEVIDMDRIEVSNLNR--QFLFRMEDVGKPKAEVAAKRVME 105
           LA  G    L + D D +E+SNLNR    +F   D+G  KA VAA+R+ E
Sbjct: 125 LAAEGLCGELRLADFDTLELSNLNRVPAGVF---DLGVNKAVVAARRIAE 171

Length = 722

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	328
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	100.0
KOG2015	422	consensus NEDD8-activating complex, catalytic comp	100.0
KOG2014	331	consensus SMT3/SUMO-activating complex, AOS1/RAD31	100.0
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	100.0
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	100.0
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	100.0
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	100.0
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	100.0
KOG2013	603	consensus SMT3/SUMO-activating complex, catalytic	100.0
PRK08223	287	hypothetical protein; Validated	100.0
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	100.0
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
PRK08328	231	hypothetical protein; Provisional	100.0
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	100.0
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	100.0
PRK07411	390	hypothetical protein; Validated	100.0
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	100.0
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	100.0
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	100.0
KOG2016	523	consensus NEDD8-activating complex, APP-BP1/UBA5 c	100.0
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	100.0
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	100.0
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	100.0
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	100.0
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	100.0
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	100.0
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	100.0
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	100.0
PRK14852	989	hypothetical protein; Provisional	100.0
PRK14851	679	hypothetical protein; Provisional	100.0
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	100.0
PRK07877	722	hypothetical protein; Provisional	100.0
TIGR03603	318	cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy	100.0
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	99.97
PRK15116	268	sulfur acceptor protein CsdL; Provisional	99.97
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	99.97
PTZ00245	287	ubiquitin activating enzyme; Provisional	99.97
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	99.97
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	99.97
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	99.97
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	99.96
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	99.96
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	99.96
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	99.95
KOG2336	422	consensus Molybdopterin biosynthesis-related prote	99.93
PRK06153	393	hypothetical protein; Provisional	99.93
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	99.88
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	99.75
KOG2337	669	consensus Ubiquitin activating E1 enzyme-like prot	99.58
PF02134	67	UBACT: Repeat in ubiquitin-activating (UBA) protei	99.11
COG4015	217	Predicted dinucleotide-utilizing enzyme of the Thi	98.55
PF05237	84	MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 T	98.26
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.03
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	98.02
TIGR03882	193	cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydr	97.92
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.92
PF10585	45	UBA_e1_thiolCys: Ubiquitin-activating enzyme activ	97.81
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.69
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.57
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.44
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.35
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.32
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.3
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.18
PRK05562	223	precorrin-2 dehydrogenase; Provisional	97.15
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.09
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.09
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.06
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.02
PRK04148	134	hypothetical protein; Provisional	96.99
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.96
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.94
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.8
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.77
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	96.68
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.62
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.61
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.54
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.47
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.45
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.39
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	96.25
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.25
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	96.21
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.19
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.17
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	96.14
PLN00203	519	glutamyl-tRNA reductase	96.11
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.1
PRK10637	457	cysG siroheme synthase; Provisional	96.09
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	96.09
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.07
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.04
PRK06141	314	ornithine cyclodeaminase; Validated	95.98
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.98
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.96
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	95.92
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.91
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.88
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.87
PRK07340	304	ornithine cyclodeaminase; Validated	95.79
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.76
PTZ00117	319	malate dehydrogenase; Provisional	95.72
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	95.71
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	95.7
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.7
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.67
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	95.63
PLN02602	350	lactate dehydrogenase	95.61
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.56
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.48
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	95.39
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.35
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.35
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	95.32
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.26
PRK08618	325	ornithine cyclodeaminase; Validated	95.26
PRK13403	335	ketol-acid reductoisomerase; Provisional	95.2
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.16
PRK08291	330	ectoine utilization protein EutC; Validated	95.13
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.12
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	95.1
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	95.02
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.01
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	95.0
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	94.98
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	94.95
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.93
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	94.93
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.91
PRK07680	273	late competence protein ComER; Validated	94.88
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.86
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	94.86
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	94.8
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	94.77
PRK12480	330	D-lactate dehydrogenase; Provisional	94.76
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	94.73
PRK05854	313	short chain dehydrogenase; Provisional	94.67
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.64
PRK07063	260	short chain dehydrogenase; Provisional	94.63
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.6
PRK06197	306	short chain dehydrogenase; Provisional	94.59
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	94.58
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.55
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.55
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.54
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	94.51
PRK07417	279	arogenate dehydrogenase; Reviewed	94.41
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.41
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	94.4
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.38
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	94.37
PRK10537	393	voltage-gated potassium channel; Provisional	94.36
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	94.36
PRK09496	453	trkA potassium transporter peripheral membrane com	94.32
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	94.3
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	94.27
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	94.27
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	94.25
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	94.2
PRK06223	307	malate dehydrogenase; Reviewed	94.2
PRK05225	487	ketol-acid reductoisomerase; Validated	94.18
PRK09242	257	tropinone reductase; Provisional	94.18
KOG0409	327	consensus Predicted dehydrogenase [General functio	94.13
PRK08251	248	short chain dehydrogenase; Provisional	94.12
PRK07062	265	short chain dehydrogenase; Provisional	94.12
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	94.1
PTZ00325	321	malate dehydrogenase; Provisional	94.08
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	94.04
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	94.01
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	93.99
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	93.97
PRK03659	601	glutathione-regulated potassium-efflux system prot	93.94
PRK09496	453	trkA potassium transporter peripheral membrane com	93.85
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.83
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	93.81
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	93.71
PRK10669	558	putative cation:proton antiport protein; Provision	93.67
PRK08818	370	prephenate dehydrogenase; Provisional	93.62
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	93.62
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	93.61
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	93.55
PLN02688	266	pyrroline-5-carboxylate reductase	93.55
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	93.54
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.53
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	93.52
PRK13304	265	L-aspartate dehydrogenase; Reviewed	93.49
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	93.43
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	93.42
PRK05875	276	short chain dehydrogenase; Provisional	93.39
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	93.33
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	93.29
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	93.27
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	93.24
PRK08655	437	prephenate dehydrogenase; Provisional	93.24
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	93.23
PRK06046	326	alanine dehydrogenase; Validated	93.22
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.22
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	93.1
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	93.09
COG0300	265	DltE Short-chain dehydrogenases of various substra	93.06
PLN00106	323	malate dehydrogenase	93.04
PRK07574	385	formate dehydrogenase; Provisional	93.01
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	93.0
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.0
PRK07831	262	short chain dehydrogenase; Provisional	92.95
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	92.94
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	92.92
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	92.92
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	92.9
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	92.84
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	92.83
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	92.81
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	92.81
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	92.8
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	92.78
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	92.78
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	92.76
PLN03139	386	formate dehydrogenase; Provisional	92.73
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.68
PRK07576	264	short chain dehydrogenase; Provisional	92.67
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	92.67
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	92.66
PRK00811	283	spermidine synthase; Provisional	92.64
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	92.6
PRK06199	379	ornithine cyclodeaminase; Validated	92.58
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	92.58
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	92.54
PRK05442	326	malate dehydrogenase; Provisional	92.54
PLN02780	320	ketoreductase/ oxidoreductase	92.49
PRK00048	257	dihydrodipicolinate reductase; Provisional	92.48
PRK06545	359	prephenate dehydrogenase; Validated	92.47
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.42
PTZ00431	260	pyrroline carboxylate reductase; Provisional	92.41
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	92.38
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	92.37
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	92.35
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	92.33
PLN03209	576	translocon at the inner envelope of chloroplast su	92.31
PLN02852	491	ferredoxin-NADP+ reductase	92.29
PRK07814	263	short chain dehydrogenase; Provisional	92.21
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	92.21
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	92.2
PRK06181	263	short chain dehydrogenase; Provisional	92.12
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	92.11
PRK07478	254	short chain dehydrogenase; Provisional	92.04
PRK08374	336	homoserine dehydrogenase; Provisional	92.03
PRK14982	340	acyl-ACP reductase; Provisional	91.93
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.91
PLN02427	386	UDP-apiose/xylose synthase	91.9
PRK05867	253	short chain dehydrogenase; Provisional	91.83
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	91.79
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	91.79
PRK06949	258	short chain dehydrogenase; Provisional	91.78
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	91.77
PRK09186	256	flagellin modification protein A; Provisional	91.74
PRK05866	293	short chain dehydrogenase; Provisional	91.72
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	91.71
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.7
PRK15059	292	tartronate semialdehyde reductase; Provisional	91.67
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	91.63
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.61
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	91.58
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	91.49
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	91.48
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	91.47
PLN02253	280	xanthoxin dehydrogenase	91.44
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.42
PLN00112	444	malate dehydrogenase (NADP); Provisional	91.42
PRK06194	287	hypothetical protein; Provisional	91.37
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	91.36
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	91.32
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	91.3
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	91.27
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	91.26
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	91.15
PLN02240	352	UDP-glucose 4-epimerase	91.08
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	91.04
PTZ00188	506	adrenodoxin reductase; Provisional	91.02
PRK06172	253	short chain dehydrogenase; Provisional	90.97
PRK12939	250	short chain dehydrogenase; Provisional	90.97
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	90.94
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	90.94
PRK06138	252	short chain dehydrogenase; Provisional	90.93
PRK06567	1028	putative bifunctional glutamate synthase subunit b	90.93
PLN02383	344	aspartate semialdehyde dehydrogenase	90.91
PRK12814	652	putative NADPH-dependent glutamate synthase small	90.9
PLN02858	1378	fructose-bisphosphate aldolase	90.89
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	90.89
PRK07523	255	gluconate 5-dehydrogenase; Provisional	90.85
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.85
PRK11730	715	fadB multifunctional fatty acid oxidation complex	90.82
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	90.78
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	90.74
PRK12779	944	putative bifunctional glutamate synthase subunit b	90.71
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	90.69
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	90.69
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.66
PRK12367	245	short chain dehydrogenase; Provisional	90.66
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.62
PRK06139	330	short chain dehydrogenase; Provisional	90.62
PRK06125	259	short chain dehydrogenase; Provisional	90.6
PRK08339	263	short chain dehydrogenase; Provisional	90.58
PRK06940	275	short chain dehydrogenase; Provisional	90.56
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	90.53
PRK04457	262	spermidine synthase; Provisional	90.5
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	90.48
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	90.48
PRK12827	249	short chain dehydrogenase; Provisional	90.39
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	90.38
PRK07102	243	short chain dehydrogenase; Provisional	90.37
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.35
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	90.35
PRK07589	346	ornithine cyclodeaminase; Validated	90.34
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	90.33
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	90.32
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	90.31
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	90.13
PRK07774	250	short chain dehydrogenase; Provisional	90.09
PRK07035	252	short chain dehydrogenase; Provisional	90.06
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	90.06
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	90.0
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	90.0
PRK13303	265	L-aspartate dehydrogenase; Provisional	89.95
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	89.94
PRK06523	260	short chain dehydrogenase; Provisional	89.94
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	89.92
PRK13243	333	glyoxylate reductase; Reviewed	89.91
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	89.9
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	89.88
PLN02928	347	oxidoreductase family protein	89.85
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	89.84
PRK06914	280	short chain dehydrogenase; Provisional	89.84
PRK06823	315	ornithine cyclodeaminase; Validated	89.82
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	89.81
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	89.75
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	89.73
PRK08213	259	gluconate 5-dehydrogenase; Provisional	89.69
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	89.69
PRK13984	604	putative oxidoreductase; Provisional	89.68
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	89.67
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	89.66
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	89.63
PRK06057	255	short chain dehydrogenase; Provisional	89.62
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	89.59
PRK05479	330	ketol-acid reductoisomerase; Provisional	89.59
PRK09126	392	hypothetical protein; Provisional	89.57
PLN02206	442	UDP-glucuronate decarboxylase	89.55
PRK12829	264	short chain dehydrogenase; Provisional	89.54
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	89.53
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	89.51
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	89.5
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	89.46
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	89.43
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.41
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	89.4
PRK08306	296	dipicolinate synthase subunit A; Reviewed	89.36
PRK05876	275	short chain dehydrogenase; Provisional	89.34
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.33
PRK08277	278	D-mannonate oxidoreductase; Provisional	89.3
PRK07453	322	protochlorophyllide oxidoreductase; Validated	89.27
PRK09291	257	short chain dehydrogenase; Provisional	89.26
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	89.26
PRK06436	303	glycerate dehydrogenase; Provisional	89.22
PRK05872	296	short chain dehydrogenase; Provisional	89.2
PRK05650	270	short chain dehydrogenase; Provisional	89.19
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	89.19
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	89.13
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	89.11
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	89.1
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	89.04
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	88.98
PLN02166	436	dTDP-glucose 4,6-dehydratase	88.93
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	88.9
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	88.9
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	88.89
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	88.84
PRK08643	256	acetoin reductase; Validated	88.83
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	88.81
PRK06407	301	ornithine cyclodeaminase; Provisional	88.77
PRK06185	407	hypothetical protein; Provisional	88.68
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	88.63
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	88.58
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	88.54
PRK07074	257	short chain dehydrogenase; Provisional	88.51
COG0281	432	SfcA Malic enzyme [Energy production and conversio	88.51
PRK08589	272	short chain dehydrogenase; Validated	88.49
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	88.44
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	88.42
PRK06124	256	gluconate 5-dehydrogenase; Provisional	88.28
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	88.28
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	88.2
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	88.19
PRK07326	237	short chain dehydrogenase; Provisional	88.11
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	88.09
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	87.99
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	87.98
PLN00016	378	RNA-binding protein; Provisional	87.94
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	87.92
PRK07067	257	sorbitol dehydrogenase; Provisional	87.87
PRK07236	386	hypothetical protein; Provisional	87.87
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	87.86
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	87.85
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	87.83
PRK11728	393	hydroxyglutarate oxidase; Provisional	87.78
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	87.76
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	87.71
PLN02896	353	cinnamyl-alcohol dehydrogenase	87.7
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	87.69
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	87.67
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	87.63
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	87.62
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	87.6
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	87.58
PRK08013	400	oxidoreductase; Provisional	87.56
PRK06398	258	aldose dehydrogenase; Validated	87.55
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	87.53
PRK06184	502	hypothetical protein; Provisional	87.5
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	87.49
PLN02463	447	lycopene beta cyclase	87.48
PRK15076	431	alpha-galactosidase; Provisional	87.45
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	87.38
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	87.38
PRK08085	254	gluconate 5-dehydrogenase; Provisional	87.37
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	87.36
PRK12770	352	putative glutamate synthase subunit beta; Provisio	87.34
PRK08278	273	short chain dehydrogenase; Provisional	87.29
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	87.28
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	87.28
PRK08226	263	short chain dehydrogenase; Provisional	87.26
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	87.23
PRK07097	265	gluconate 5-dehydrogenase; Provisional	87.21
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.2
PRK07677	252	short chain dehydrogenase; Provisional	87.19
PRK12744	257	short chain dehydrogenase; Provisional	87.17
PRK12937	245	short chain dehydrogenase; Provisional	87.11
PRK08244	493	hypothetical protein; Provisional	87.08
PRK06270	341	homoserine dehydrogenase; Provisional	87.07
PRK08264	238	short chain dehydrogenase; Validated	87.0
PRK07109	334	short chain dehydrogenase; Provisional	86.98
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	86.96
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	86.93
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	86.91
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.85
PRK05717	255	oxidoreductase; Validated	86.84
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	86.84
PRK06114	254	short chain dehydrogenase; Provisional	86.8
PLN02740	381	Alcohol dehydrogenase-like	86.79
TIGR00036	266	dapB dihydrodipicolinate reductase.	86.75
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	86.68
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	86.62
PRK05855	582	short chain dehydrogenase; Validated	86.62
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	86.58
PRK08163	396	salicylate hydroxylase; Provisional	86.46
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	86.43
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	86.4
PRK07024	257	short chain dehydrogenase; Provisional	86.36
PLN02464	627	glycerol-3-phosphate dehydrogenase	86.35
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	86.33
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	86.32
PRK07856	252	short chain dehydrogenase; Provisional	86.32
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	86.28
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	86.27
PRK08862	227	short chain dehydrogenase; Provisional	86.22
PRK06932	314	glycerate dehydrogenase; Provisional	86.21
PRK06487	317	glycerate dehydrogenase; Provisional	86.2
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	86.18
PLN02494	477	adenosylhomocysteinase	86.18
PRK12743	256	oxidoreductase; Provisional	86.14
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	86.09
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.09
PRK08507	275	prephenate dehydrogenase; Validated	85.99
CHL00194	317	ycf39 Ycf39; Provisional	85.98
PRK12746	254	short chain dehydrogenase; Provisional	85.98
PRK06179	270	short chain dehydrogenase; Provisional	85.97
PLN02366	308	spermidine synthase	85.92
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	85.91
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	85.88
PRK06753	373	hypothetical protein; Provisional	85.85
PRK08303	305	short chain dehydrogenase; Provisional	85.81
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	85.74
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	85.69
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	85.68
PRK06198	260	short chain dehydrogenase; Provisional	85.67
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	85.64
PTZ00075	476	Adenosylhomocysteinase; Provisional	85.64
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	85.62
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	85.61
PRK06847	375	hypothetical protein; Provisional	85.53
PRK14031	444	glutamate dehydrogenase; Provisional	85.5
PRK07454	241	short chain dehydrogenase; Provisional	85.47
PRK08265	261	short chain dehydrogenase; Provisional	85.42
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	85.38
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	85.29
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	85.27
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	85.25
PLN02256	304	arogenate dehydrogenase	85.17

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=100.00  E-value=1.2e-61  Score=444.26  Aligned_cols=274  Identities=66%  Similarity=1.115  Sum_probs=261.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      +|+|||+||+|||++|||+++|||+|+|+|+|.|+.+||+|||||+++|+|++||++++++++++||+++++++...+.+
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~   80 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD   80 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCCCCccccccCCCC
Q 020259          122 KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFP  201 (328)
Q Consensus       122 ~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~~~c~~c~~~~~~  201 (328)
                      .+.+++++||+||+|+|+.++|+++|+.|+.+..+.+     ++..+|+|++++.|+.|++++++|+.|+||+|.++.+|
T Consensus        81 ~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~-----~~~~iPlI~~gt~G~~G~v~vi~P~~t~C~~C~~d~~p  155 (291)
T cd01488          81 KDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYED-----PESIIPLIDGGTEGFKGHARVILPGITACIECSLDLFP  155 (291)
T ss_pred             hhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccc-----cccCccEEEEEEcccEEEEEEEcCCCCCccccCCCCCC
Confidence            8889999999999999999999999999876543221     35679999999999999999999999999999999999


Q ss_pred             CCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCcc
Q 020259          202 PQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPA  281 (328)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  281 (328)
                      ++..+|+|+++++|+.++||++|+..+.|.+++...++++++++|++|+++.+++++++|+|++.+..+++++++++.|+
T Consensus       156 ~~~~~p~Cti~~~P~~~~hci~~a~~~~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPa  235 (291)
T cd01488         156 PQVTFPLCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPA  235 (291)
T ss_pred             CCCCCCcccccCCCCCcchheeeeeeeecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCc
Confidence            99999999999999999999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCccc
Q 020259          282 IASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFF  320 (328)
Q Consensus       282 l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~  320 (328)
                      +++|+||||+.++.|++|++|+..++++||++|.|.++.
T Consensus       236 i~stnaiia~~~~~~~~k~~~~~~~~~~n~~~~~g~~g~  274 (291)
T cd01488         236 VASTNAIIAAACCLEALKIATDCYENLNNYLMYNGVDGC  274 (291)
T ss_pred             cCchHHHHHHHHHHHHHHHHhccccCCCceEEEecCCce
Confidence            999999999999999999999999999999999999864

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-60  Score=424.90  Aligned_cols=310  Identities=53%  Similarity=0.889  Sum_probs=294.7

Q ss_pred             ccchhhhhhhhcCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCC
Q 020259            7 SRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLF   86 (328)
Q Consensus         7 ~~~~~~~~~~~~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~   86 (328)
                      -||.+.-++.+|+++|.-.-+..+.|.-+.| .+.+|||||+||+|||++|||+++|++.+.++|.|.++.+||+|||+|
T Consensus         8 ~r~~~~~~~l~r~gpf~~~~f~~~~e~l~~l-~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF   86 (422)
T KOG2015|consen    8 KRWNGWRQSLERPGPFNLDAFEPSEENLEFL-QDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLF   86 (422)
T ss_pred             hhhHHHHHHhcCCCCCCCCCCCCCHHHHHHH-hhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcc
Confidence            4899999999999999999999999999999 699999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccc
Q 020259           87 RMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET  166 (328)
Q Consensus        87 ~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~  166 (328)
                      ++.|+|++||+++++.+.+..|...|..+..++++.+.+|+++|++||++.|+.++|+|||.+.+.+..+   |++=...
T Consensus        87 ~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~---g~~d~~~  163 (422)
T KOG2015|consen   87 RESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLE---GNYDISS  163 (422)
T ss_pred             cccccCchhHHHHHHHHHhhCCCcEEeeeecchhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhc---cCCCccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999876543   2211234


Q ss_pred             cceEEEeeecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcC-CCCCCCChh
Q 020259          167 IKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSG-KSFDPDDPE  245 (328)
Q Consensus       167 ~~p~i~~~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~  245 (328)
                      -+|+|++|++|+.|++++++|+.|+|++|.++.+|++-.+|.|++.+.||.|+||++|...+.|.+.... .+++.++++
T Consensus       164 iiPlIDGGtEG~KG~arvI~Pg~TaCieCtldlyppqvs~P~CTiAntPRlpEHciEyv~liqwpe~~~~g~~~~gdd~~  243 (422)
T KOG2015|consen  164 IIPLIDGGTEGFKGHARVIYPGITACIECTLDLYPPQVSYPMCTIANTPRLPEHCIEYVKLIQWPELNPFGVPLDGDDPE  243 (422)
T ss_pred             eeeeeecCcccccceeEEEecCccHHHHhHHhhcCcccCcccceecCCCCCchHhhhhhhhhcchhhCccCCCCCCCCHH
Confidence            5899999999999999999999999999999999999999999999999999999999999999999865 678999999


Q ss_pred             HHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCccc
Q 020259          246 HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFF  320 (328)
Q Consensus       246 ~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~  320 (328)
                      |++|+.+.+++++.+|++++.+..++.++++.++|+++.|+|+|++.+|.|++|++|.-+.|++||++|++.+|.
T Consensus       244 hI~wi~er~~eRA~ef~I~gv~~~lvtGvvK~IIPaVasTNA~IAA~Ca~ea~Kl~t~~~~~~~Nym~~n~~eG~  318 (422)
T KOG2015|consen  244 HIEWIVERSNERANEFNITGVTRRLVTGVVKRIIPAVASTNAVIAAVCATEALKLLTATDDPLDNYMNYNAEEGI  318 (422)
T ss_pred             HHHHHHHHHHHHhhhcccccchHHhhhhhHHhhcchhhhhhHHHHHHHHHHHHHHHHhcchhhhhheeeecccce
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998874

>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-56  Score=396.92  Aligned_cols=291  Identities=19%  Similarity=0.201  Sum_probs=240.8

Q ss_pred             cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259           18 RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE   97 (328)
Q Consensus        18 ~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~   97 (328)
                      ...-|||||||||.++|++|| ++||||+|++|+|+|++|||+++|||++|++|+..|++++++.|||+..+++|++||+
T Consensus        10 E~alYDRQIRLWG~~AQ~~lr-~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~rae   88 (331)
T KOG2014|consen   10 EIALYDRQIRLWGLEAQRRLR-KSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAE   88 (331)
T ss_pred             HHHHHHHHHHHccHHHHHhhh-hceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHHH
Confidence            445699999999999999995 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259           98 VAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG  177 (328)
Q Consensus        98 a~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G  177 (328)
                      +..++++++||+|++....+++.+.+++||.+||+||....+.+.+..+|.+|             |+.+++|+.+.+.|
T Consensus        89 as~erl~~LNPmV~v~~d~edl~ek~eeff~qFdlVV~~~~s~e~~~kvn~ic-------------rk~~i~F~a~d~~g  155 (331)
T KOG2014|consen   89 ASLERLQDLNPMVDVSVDKEDLSEKDEEFFTQFDLVVATDQSREEKCKVNEIC-------------RKLNIAFYAGDCFG  155 (331)
T ss_pred             HHHHHHHhcCCceEEEechhhhhhcchhhhhceeEEEEeccchhhhhhHHHHH-------------HhcCceEEeccccc
Confidence            99999999999999999999999999999999999999988889999999999             67889999999999


Q ss_pred             eeeeEEEEcCCCCCccc-----cccCC-------C---CCCCCCCcccccC-------------CCCChhhHHHHHHHHh
Q 020259          178 FKGHARVIIPGVTPCFE-----CTIWL-------F---PPQVKFPLCTLAE-------------TPRTAAHCIEYAHLIK  229 (328)
Q Consensus       178 ~~G~v~~~~p~~~~c~~-----c~~~~-------~---~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~  229 (328)
                      +.|+.+.++.+|..-..     |.-+.       .   +.+....+|++.+             .+|..+.++.+...+.
T Consensus       156 ~~Gy~F~dL~~h~y~~~~~~~~~~~~~k~~k~~~~~~~~vk~~~~~~~~~Eal~~~~~~k~k~~~rr~~~~~~ll~v~l~  235 (331)
T KOG2014|consen  156 LCGYAFADLQEHKYLEEKTKVAKVSQTKRAKVDETETEWVKRKVVFPSVKEALSVDWTKKEKRKPRRTKKLYFLLPVLLK  235 (331)
T ss_pred             eeeeeeeehhhhhhhhhcccccccccccceeeeeccceehhhhhcccCHHHHHhcccchhhhhhhhccCcceehHHHHHH
Confidence            99999999987643221     11000       0   0111222233221             1222333456666777


Q ss_pred             hhhhhcCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCC
Q 020259          230 WDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS  309 (328)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~  309 (328)
                      |..-+++.+- ..+.++++.+....++.....++-+.  . ..++....+++++|+||||||++|||+||+||++..|++
T Consensus       236 f~~s~~r~pg-~~~~~d~erl~~I~~ell~s~~i~pd--~-~~~f~~~~~~ef~Pv~AvVGGivaQevIk~isk~~~Pl~  311 (331)
T KOG2014|consen  236 FRTSEGRDPG-ETSEEDLERLLQIRNELLESETIIPD--E-LLEFLSLIFTEFAPVCAVVGGILAQEVIKAISKKGPPLN  311 (331)
T ss_pred             HHHhcCCCCc-cccHHHHHHHHHHHHhhccccccCCc--h-HHHHHHhcccccCchhhhhhhHhHHHHHHHhhcCCCccc
Confidence            7777776666 56778888888877777764444333  2 227888999999999999999999999999999999999


Q ss_pred             ceEEeecCccccccccc
Q 020259          310 NYLTYAQLSFFASAMQF  326 (328)
Q Consensus       310 N~~~fdg~~~~~~~~~~  326 (328)
                      |||+|||+++.|.+..|
T Consensus       312 Nff~fdg~~g~g~ie~l  328 (331)
T KOG2014|consen  312 NFFIFDGETGKGPIEDL  328 (331)
T ss_pred             ceEEeecccCceehhhc
Confidence            99999999999987665

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=100.00  E-value=6e-54  Score=383.61  Aligned_cols=231  Identities=53%  Similarity=0.996  Sum_probs=219.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      ||+|+|+||+|||++|+|+++|+|+|+|+|+|.|+++||+|||||+++|+|++||++++++++++||+++++++..++.+
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~   80 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP   80 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999998843


Q ss_pred             ---cchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCCCCccccccC
Q 020259          122 ---KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW  198 (328)
Q Consensus       122 ---~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~~~c~~c~~~  198 (328)
                         .+.+++++||+||+|+|+.++|.++|+.|             +..++|+|++++.|+.|++++++|+.++||+|.. 
T Consensus        81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c-------------~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~C~~-  146 (234)
T cd01484          81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGML-------------IFLIVPLIESGTEGFKGNAQVILPGMTECIECTL-  146 (234)
T ss_pred             hhhchHHHHhCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEcccCCceEEEEEcCCCCCCcccCC-
Confidence               35789999999999999999999999999             6778999999999999999999999999999998 


Q ss_pred             CCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhcc
Q 020259          199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNI  278 (328)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~  278 (328)
                       .++++.+|.|+++++|+.|+||+.|+..+.|           ++..|++|+++.+++++++|+|++.+....+++++++
T Consensus       147 -~~~~~~~p~Cti~~~P~~~~hci~~a~~~~~-----------d~~~~~~~i~~~a~~ra~~~~i~~~~~~~~~~i~~~i  214 (234)
T cd01484         147 -YPPQKNFPMCTIASMPRLPEHCIEWARMLQW-----------DDPEHIQFIFQASNERASQYNIRGVTYFLTKGVAGRI  214 (234)
T ss_pred             -CCCCCCCCccccCCCCCCchHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHhcCe
Confidence             4666789999999999999999999999988           6788999999999999999999999999999999999


Q ss_pred             CccccchhHHHHHHHHHHHH
Q 020259          279 IPAIASTNAIISAACALETL  298 (328)
Q Consensus       279 ~~~l~p~~aivGG~~aqEvi  298 (328)
                      +|++++|+|||+|+++.|++
T Consensus       215 ipai~tTnaiia~~~~~e~~  234 (234)
T cd01484         215 IPAVATTNAVVAGVCALEVF  234 (234)
T ss_pred             ecchhhHHHHHHHHHHHhhC
Confidence            99999999999999999863

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=100.00  E-value=5.7e-53  Score=390.82  Aligned_cols=256  Identities=41%  Similarity=0.722  Sum_probs=237.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      +|+|||+||+|+|++|||+++|+|+|+|+|+|.++.+||+|||+|+++|+|++||++++++++++||+++|+++...+.+
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~   80 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD   80 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999998875


Q ss_pred             c--chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCCCCccccccCC
Q 020259          122 K--DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWL  199 (328)
Q Consensus       122 ~--~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~~~c~~c~~~~  199 (328)
                      .  +.++++++|+||+|.|+.+.|.++|++|             +..++|+|++++.|+.|++++++|+.++||+|..+ 
T Consensus        81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c-------------~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~c~~~-  146 (312)
T cd01489          81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMC-------------LAADVPLIESGTTGFLGQVQVIKKGKTECYECQPK-  146 (312)
T ss_pred             ccchHHHHhcCCEEEECCCCHHHHHHHHHHH-------------HHCCCCEEEEecCcceeEEEEEcCCCCCccCCCCC-
Confidence            3  5689999999999999999999999999             67899999999999999999999999999999865 


Q ss_pred             CCCCCCCCcccccCCCCChhhHHHHHHHH--------------------hhhhhhcC-------CCCCCCChhHHHHHHH
Q 020259          200 FPPQVKFPLCTLAETPRTAAHCIEYAHLI--------------------KWDEVHSG-------KSFDPDDPEHMQWVYS  252 (328)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------------~~~~~~~~-------~~~~~~~~~~~~~l~~  252 (328)
                       +++..++.|++.+.|+.+.||+.|+..+                    .|+..+.+       .+|++|+++|++|+++
T Consensus       147 -~~~~~~pictI~~~p~~~~hci~~a~~~f~~~~~~f~~~i~~l~~~~~~w~~~~~p~p~~~~~~~fdkDd~~~~~~v~~  225 (312)
T cd01489         147 -ETPKTFPVCTIRSTPSQPIHCIVWAKSLFFLFNKVFKDDIERLLSMEELWKTRKPPVPLSWKELTFDKDDQDALDFVAA  225 (312)
T ss_pred             -CCCCcCCcceecCCCCCCEeehhHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCCCCCCcCcCCCCHHHHHHHHH
Confidence             4456799999999999999999999887                    78765533       4588999999999999


Q ss_pred             HHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceE
Q 020259          253 EAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYL  312 (328)
Q Consensus       253 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~  312 (328)
                      ++++++.+|+|+..+....++++++++|++++|+|||+|+++.|++|+++++..-..|.|
T Consensus       226 ~a~lRa~~f~I~~~~~~~~k~i~g~IiPaiatTnaivag~~~~e~~k~~~~~~~~~~~~~  285 (312)
T cd01489         226 AANLRSHVFGIPMKSRFDIKQMAGNIIPAIATTNAIIAGLIVLEALKVLSGDKEQCRTVF  285 (312)
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHhhhHHHhhhHh
Confidence            999999999999999999999999999999999999999999999999999855555544

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=100.00  E-value=3.6e-51  Score=393.77  Aligned_cols=157  Identities=21%  Similarity=0.269  Sum_probs=147.9

Q ss_pred             CCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHH
Q 020259           20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVA   99 (328)
Q Consensus        20 ~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~   99 (328)
                      .|||||+|+||.++|++| ++++|+|||+||+|+|++|||+++|||+|||+|++.|+.+|+++|||++.+|+|++||+++
T Consensus         1 ~rYDRQlrLwG~~gQ~~L-~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~   79 (425)
T cd01493           1 QKYDRQLRLWGEHGQAAL-ESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEAT   79 (425)
T ss_pred             CcchHHHHHhHHHHHHHH-hhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHH
Confidence            489999999999999999 7999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCcEEEEEecccCC---cchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeec
Q 020259          100 AKRVMERVSGVNIVPHFCRIED---KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE  176 (328)
Q Consensus       100 ~~~l~~lnp~v~v~~~~~~~~~---~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~  176 (328)
                      +++|+++||+++++.+.+.+..   .+.+++++||+||+|.++...+..++++|             ++.++|+|.+++.
T Consensus        80 ~~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c-------------~~~~iPlI~~~s~  146 (425)
T cd01493          80 CELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVL-------------WSANIPLLYVRSY  146 (425)
T ss_pred             HHHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEecc
Confidence            9999999999999999887643   35789999999999999988888999999             6789999999999


Q ss_pred             ceeeeEEEEcCCCC
Q 020259          177 GFKGHARVIIPGVT  190 (328)
Q Consensus       177 G~~G~v~~~~p~~~  190 (328)
                      |++|++++++|+++
T Consensus       147 G~~G~v~v~~~~h~  160 (425)
T cd01493         147 GLYGYIRIQLKEHT  160 (425)
T ss_pred             cCEEEEEEEECCeE
Confidence            99999999999653

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=100.00  E-value=4.9e-52  Score=380.29  Aligned_cols=272  Identities=22%  Similarity=0.286  Sum_probs=210.9

Q ss_pred             CCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHH
Q 020259           21 NLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA  100 (328)
Q Consensus        21 ~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~  100 (328)
                      .|+||+++||.++|+|| ++++|+|+|+||+|+|+||||+++||++|+|+|+|.|+.+||+||||++++|+|++||++++
T Consensus         1 lYsRQl~~~G~eaq~kL-~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~   79 (286)
T cd01491           1 LYSRQLYVLGHEAMKKL-QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQ   79 (286)
T ss_pred             CcccceeccCHHHHHHH-hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHH
Confidence            38999999999999999 69999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceee
Q 020259          101 KRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKG  180 (328)
Q Consensus       101 ~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G  180 (328)
                      ++|+++||+++|+++...+   ..+++++||+||+|.++.+.+.++|++|             +++++|||.+++.|+.|
T Consensus        80 ~~L~eLNp~V~V~~~~~~~---~~~~l~~fdvVV~~~~~~~~~~~in~~c-------------~~~~ipfI~a~~~G~~G  143 (286)
T cd01491          80 ARLAELNPYVPVTVSTGPL---TTDELLKFQVVVLTDASLEDQLKINEFC-------------HSPGIKFISADTRGLFG  143 (286)
T ss_pred             HHHHHHCCCCEEEEEeccC---CHHHHhcCCEEEEecCCHHHHHHHHHHH-------------HHcCCEEEEEeccccEE
Confidence            9999999999999998763   4678999999999999999999999999             67899999999999999


Q ss_pred             eEEEEcCCCCCccccccCCCCCCCCCCcccccCC-------CCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHH
Q 020259          181 HARVIIPGVTPCFECTIWLFPPQVKFPLCTLAET-------PRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSE  253 (328)
Q Consensus       181 ~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  253 (328)
                      +++.++++   ||.|.-....++.....|++.+.       -....|.++-.+.+.|++.+++..++...+..+.-+-. 
T Consensus       144 ~vf~dfg~---~f~~~d~~ge~p~~~~i~~I~~~~~g~V~~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~v~~~~~-  219 (286)
T cd01491         144 SIFCDFGD---EFTVYDPNGEEPKSGMISSISKDNPGVVTCLDETRHGFEDGDYVTFSEVEGMTELNGCEPRKIKVKGP-  219 (286)
T ss_pred             EEEecCCC---eEEEeCCCCCcCCccceeeeecCCceEEEEECCcccCCcCCCEEEEeccCcchhhCCCccEEEEECCC-
Confidence            99998764   55554222222333344444332       12235666666778888877666555433221100000 


Q ss_pred             HHHHHHHhCCCCCch---hhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCccc
Q 020259          254 AVKRAELFGIPGVTY---SLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFF  320 (328)
Q Consensus       254 ~~~~~~~~~i~~~~~---~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~  320 (328)
                           ..+.|.....   ..-.+++.+.-  ++|++|++||++|||++|++|+++.|+.+||+||..++.
T Consensus       220 -----~~f~i~d~~~~~~y~~gG~~~qvK--~~~~~~~~g~~~~q~~~~~~~~~~~p~~q~~~~~~~~~l  282 (286)
T cd01491         220 -----YTFSIGDTSSFSEYIRGGIVTQVK--LSPMAAFFGGLAAQEVLKACSGKFTPLKQWLYFDALECL  282 (286)
T ss_pred             -----CeEEECcCcCcCccccCcEEEEEe--cccHHHHhhhHHHHHHHHHcCCCCCceeeEEEecHHHhc
Confidence                 0111110000   01111111111  899999999999999999999999999999999987654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=100.00  E-value=1.3e-50  Score=423.23  Aligned_cols=205  Identities=33%  Similarity=0.581  Sum_probs=189.7

Q ss_pred             ccchhhhhhhh--------------cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCC-----CeE
Q 020259            7 SRSRDLDKLLL--------------RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGF-----KNL   67 (328)
Q Consensus         7 ~~~~~~~~~~~--------------~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gv-----g~i   67 (328)
                      .||.|+|.+..              ..+|||||+++||.++|++| ++++|+|||+||+|||++|||+++||     |+|
T Consensus       373 ~q~~~~D~~e~l~~~~~~~~~~~~~~~~RYdrqi~l~G~~~Q~kL-~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i  451 (1008)
T TIGR01408       373 CQWFYFDSAESLPSLGKPECEEFLPRGDRYDAQIAVFGDTFQQKL-QNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMI  451 (1008)
T ss_pred             eeeEEeehhhhCCcccCcchhhccchhhhhHHHHHHcCHHHHHHH-hhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeE
Confidence            58888886443              34689999999999999999 69999999999999999999999999     899


Q ss_pred             EEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCCc-----chhhhccCCEEEecCCCHHH
Q 020259           68 EVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK-----DISFYNDFNIIVLGLDSIEA  142 (328)
Q Consensus        68 tlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~~-----~~~~~~~~dvVi~~~d~~~~  142 (328)
                      +|+|+|.|+.+||+|||||+.+|||++||++++++++++||+++|+++...+...     +.+|++++|+||+|+|+.++
T Consensus       452 ~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~a  531 (1008)
T TIGR01408       452 TVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEA  531 (1008)
T ss_pred             EEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHH
Confidence            9999999999999999999999999999999999999999999999999888542     35789999999999999999


Q ss_pred             HHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHH
Q 020259          143 RSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCI  222 (328)
Q Consensus       143 ~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i  222 (328)
                      |.++|+.|             ..+++|+|.+++.|+.|++++++|+.|.||.|..+  |++..+|+|+++++|..++||+
T Consensus       532 R~~vn~~c-------------~~~~iPli~~gt~G~~G~v~v~ip~~te~y~~~~d--~~~~~~P~Ctl~~~P~~~~h~i  596 (1008)
T TIGR01408       532 RRYVDSRC-------------LAFLKPLLESGTLGTKGNTQVVVPHLTESYGSSRD--PPEKEIPFCTLKSFPAAIEHTI  596 (1008)
T ss_pred             HHHHHHHH-------------HHcCCCEEEEeccCceeeEEEEeCCCcCCCCCCCC--CCCCCCCcccccCCCCCchHHH
Confidence            99999999             67899999999999999999999999999999853  6678899999999999999999


Q ss_pred             HHHHH
Q 020259          223 EYAHL  227 (328)
Q Consensus       223 ~~~~~  227 (328)
                      .|+..
T Consensus       597 ~wa~~  601 (1008)
T TIGR01408       597 QWARD  601 (1008)
T ss_pred             HHHHH
Confidence            98764

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=100.00  E-value=2.5e-48  Score=372.47  Aligned_cols=249  Identities=37%  Similarity=0.638  Sum_probs=221.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-----CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           42 RILVVGAGGLGCELLKDLALSGF-----KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv-----g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      +|+|||+||+|||++|||+++||     |+|+|+|+|.|+.+||+|||||+++|||++||++++++++++||+++|+++.
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~   80 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ   80 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            69999999999999999999999     9999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCc-----chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCCCC
Q 020259          117 CRIEDK-----DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP  191 (328)
Q Consensus       117 ~~~~~~-----~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~~~  191 (328)
                      ..+.+.     +.++++++|+||+|+|+.++|.++|+.|             +..++|+|.+++.|+.|++++.+|+.|+
T Consensus        81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C-------------~~~~iPli~~gt~G~~G~v~v~iP~~te  147 (435)
T cd01490          81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRC-------------VYYRKPLLESGTLGTKGNTQVVIPHLTE  147 (435)
T ss_pred             cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHH-------------HHhCCCEEEEecccceeEEEEEeCCCCC
Confidence            888642     3578999999999999999999999999             6779999999999999999999999999


Q ss_pred             ccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHH---------------------hh-----hhhh-----------
Q 020259          192 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI---------------------KW-----DEVH-----------  234 (328)
Q Consensus       192 c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------------------~~-----~~~~-----------  234 (328)
                      ||.|..+  |++...|.|+++++|+.++||++|+..+                     .|     +..+           
T Consensus       148 ~y~~~~~--p~~~~~P~Ctl~~~P~~~eHcI~wA~~~F~~lF~~~~~~~~~~~~~~c~~~a~~~f~~~F~~~I~~ll~~~  225 (435)
T cd01490         148 SYSSSRD--PPEKSIPLCTLKNFPNAIEHTIQWARDEFEGLFKQPPENVNQYLFEDCVRWARLLFEKYFNNNIKQLLHNF  225 (435)
T ss_pred             CccCCCC--CCCCCCCCccccCCCCCchHHHHHHHHHHHHHhccchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999853  6677899999999999999999998765                     23     1110           


Q ss_pred             -----------------------------------------------cCCCCCCCChh--HHHHHHHHHHHHHHHhCCCC
Q 020259          235 -----------------------------------------------SGKSFDPDDPE--HMQWVYSEAVKRAELFGIPG  265 (328)
Q Consensus       235 -----------------------------------------------~~~~~~~~~~~--~~~~l~~~~~~~~~~~~i~~  265 (328)
                                                                     +-..|.+|+..  |+++++.++|++++.|+|++
T Consensus       226 p~d~~~~~g~~fw~~~kr~P~p~~fd~~~~~h~~fv~~~a~l~a~~~~~~~FeKDdd~n~h~~fi~a~snlRa~~y~I~~  305 (435)
T cd01490         226 PPDAVTSDGAPFWSGPKRCPTPLEFDVNNPLHLDFVLAAANLYAEVYGIPGFEKDDDTNFHMDFITAASNLRARNYSIPP  305 (435)
T ss_pred             ccccccccccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCccccCCchhHHHHHHHHhhhhHHHHcCCCc
Confidence                                                           11123333332  77777788889999999999


Q ss_pred             CchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCC
Q 020259          266 VTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCS  305 (328)
Q Consensus       266 ~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~  305 (328)
                      .+....++++.+++|++++|+|+|+|+++.|++|+++++.
T Consensus       306 ~~~~~~k~iag~IIPAiaTT~aivagl~~~e~~K~~~~~~  345 (435)
T cd01490         306 ADRHKTKRIAGKIIPAIATTTAAVTGLVCLELYKVVDGKR  345 (435)
T ss_pred             cCHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHHHhCCc
Confidence            9888999999999999999999999999999999999874

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=100.00  E-value=1.3e-47  Score=335.84  Aligned_cols=195  Identities=25%  Similarity=0.334  Sum_probs=184.9

Q ss_pred             CCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHH
Q 020259           20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVA   99 (328)
Q Consensus        20 ~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~   99 (328)
                      .+||||+++||.++|++| ++++|+|+|+||+|+|++|||+++||++|+|+|+|.|+.+|++||||++++|+|++||+++
T Consensus         2 ~~Y~Rqi~l~G~e~Q~~L-~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~   80 (197)
T cd01492           2 ALYDRQIRLWGLEAQKRL-RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEAS   80 (197)
T ss_pred             chhhHHHHHhCHHHHHHH-HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHH
Confidence            579999999999999999 6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeeccee
Q 020259          100 AKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFK  179 (328)
Q Consensus       100 ~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~  179 (328)
                      +++|+++||+++++++...+.+...++++++|+||+|.++.+.+.++|+.|             ++.++|++.+++.|+.
T Consensus        81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c-------------~~~~ip~i~~~~~G~~  147 (197)
T cd01492          81 LERLRALNPRVKVSVDTDDISEKPEEFFSQFDVVVATELSRAELVKINELC-------------RKLGVKFYATGVHGLF  147 (197)
T ss_pred             HHHHHHHCCCCEEEEEecCccccHHHHHhCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEEecCCE
Confidence            999999999999999998887667889999999999999999999999999             6889999999999999


Q ss_pred             eeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHHHHHH
Q 020259          180 GHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAE  259 (328)
Q Consensus       180 G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  259 (328)
                      |+++.++                                                                         
T Consensus       148 G~v~~d~-------------------------------------------------------------------------  154 (197)
T cd01492         148 GFVFADL-------------------------------------------------------------------------  154 (197)
T ss_pred             EEEEEec-------------------------------------------------------------------------
Confidence            9987421                                                                         


Q ss_pred             HhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCcccccc
Q 020259          260 LFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFASA  323 (328)
Q Consensus       260 ~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~~~~  323 (328)
                                            ++|+++++|+++++|++|+++|+++|+.+++.||+.++.++.
T Consensus       155 ----------------------~~p~~~~~~~~~~~e~~k~~~~~~~~l~~~~~~d~~~~~~~~  196 (197)
T cd01492         155 ----------------------LAPVAAVVGGILAQDVINALSKRESPLNNFFVFDGETSEAPI  196 (197)
T ss_pred             ----------------------cccHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECCCCcCcc
Confidence                                  479999999999999999999999999999999999998875

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=100.00  E-value=1.4e-46  Score=337.18  Aligned_cols=224  Identities=32%  Similarity=0.483  Sum_probs=199.0

Q ss_pred             CCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHH
Q 020259           21 NLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV   98 (328)
Q Consensus        21 ~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a   98 (328)
                      ||+||+++  ||.++|++| ++++|+|+|+||+|+++|++|+++|+|+|+|+|+|.|+++|++||+|++++|+|++||++
T Consensus         1 rY~Rq~~l~~~g~~~q~~L-~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~   79 (228)
T cd00757           1 RYSRQILLPEIGEEGQEKL-KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEA   79 (228)
T ss_pred             CcceeechhhcCHHHHHHH-hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHH
Confidence            69999999  999999999 699999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCcEEEEEecccCCc-chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259           99 AAKRVMERVSGVNIVPHFCRIEDK-DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG  177 (328)
Q Consensus        99 ~~~~l~~lnp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G  177 (328)
                      ++++|+++||+++++.++..+... ..++++++|+||+|+|+++.+.++++.|             +++++|+|++++.|
T Consensus        80 ~~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~-------------~~~~ip~i~~g~~g  146 (228)
T cd00757          80 AAERLRAINPDVEIEAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDAC-------------VKLGKPLVSGAVLG  146 (228)
T ss_pred             HHHHHHHhCCCCEEEEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH-------------HHcCCCEEEEEecc
Confidence            999999999999999999888543 3678899999999999999999999999             67889999999999


Q ss_pred             eeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHHHH
Q 020259          178 FKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKR  257 (328)
Q Consensus       178 ~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  257 (328)
                      +.|++.+..|+.++||.|.+...+... .+.                                                 
T Consensus       147 ~~g~v~~~~p~~~~c~~c~~~~~~~~~-~~~-------------------------------------------------  176 (228)
T cd00757         147 FEGQVTVFIPGEGPCYRCLFPEPPPPG-VPS-------------------------------------------------  176 (228)
T ss_pred             CEEEEEEECCCCCCCccccCCCCCCCC-CCc-------------------------------------------------
Confidence            999999999999999999875322100 000                                                 


Q ss_pred             HHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCC-CCceEEeecCccccccccc
Q 020259          258 AELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKT-LSNYLTYAQLSFFASAMQF  326 (328)
Q Consensus       258 ~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~p-i~N~~~fdg~~~~~~~~~~  326 (328)
                                        ....+.++|+++++|+++++|++|+|+|..+| ...++.||..+.....++|
T Consensus       177 ------------------~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~~~~~~~~~~~d~~~~~~~~~~~  228 (228)
T cd00757         177 ------------------CAEAGVLGPLVGVIGSLQALEALKILLGIGEPLAGRLLLFDALSMSFRTLKL  228 (228)
T ss_pred             ------------------cccCCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCEEEEEeC
Confidence                              01236689999999999999999999998755 4799999999988777654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.9e-48  Score=360.67  Aligned_cols=267  Identities=40%  Similarity=0.707  Sum_probs=243.0

Q ss_pred             HHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcE
Q 020259           32 ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVN  111 (328)
Q Consensus        32 ~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~  111 (328)
                      +.++.+ +++|||||||||+|||++|||++.|+++|+|||.|+++.+||+|||||+.++||++||.++++.+++.||+++
T Consensus         5 ~~~eai-~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~   83 (603)
T KOG2013|consen    5 EKHEAI-KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIK   83 (603)
T ss_pred             HHHHHh-ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCc
Confidence            445667 7999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecccCCc--chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCC
Q 020259          112 IVPHFCRIEDK--DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGV  189 (328)
Q Consensus       112 v~~~~~~~~~~--~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~  189 (328)
                      +.++...+.+.  +.+||.+||+|++|.||.++|+++|++|             ....+|+|..|+.|+.|+++++++|.
T Consensus        84 l~~yhanI~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C-------------~~a~vPLIesGt~Gf~GQv~~ii~Gk  150 (603)
T KOG2013|consen   84 LVPYHANIKEPKFNVEFFRQFDIVLNALDNLAARRYVNRMC-------------LAASVPLIESGTGGFLGQVQVIIKGK  150 (603)
T ss_pred             eEeccccccCcchHHHHHHHHHHHHHhhccHHHHHHHHHHH-------------HhhcCCceecCcccccceEEEEecCC
Confidence            99999998764  6889999999999999999999999999             56789999999999999999999999


Q ss_pred             CCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhh-----------------------------------
Q 020259          190 TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH-----------------------------------  234 (328)
Q Consensus       190 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----------------------------------  234 (328)
                      |.||+|.-.  |.+..+|.|+++++|..+.||+.|+..+.|...+                                   
T Consensus       151 TECyeC~pK--~~~kTypvCTIRstPS~~iHCIVWAK~~lF~qlF~~d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d  228 (603)
T KOG2013|consen  151 TECYECIPK--PVPKTYPVCTIRSTPSEPIHCIVWAKHYLFNQLFGEDDDDQYGRHDNADPDNCEDMTEEEAEAFRETED  228 (603)
T ss_pred             cceecccCC--CCCCcCCceEeecCCCCceeeeeehHhHHHHHHhccccccccccccccCchhhhccChhhhhhhccchH
Confidence            999999853  5567799999999999999999998865555544                                   


Q ss_pred             --------------------------------------------------------------------------------
Q 020259          235 --------------------------------------------------------------------------------  234 (328)
Q Consensus       235 --------------------------------------------------------------------------------  234 (328)
                                                                                                      
T Consensus       229 ~~Er~~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p~pl~~~~~i~~~~~t~ns~~q~~~~a~~~~~~v  308 (603)
T KOG2013|consen  229 LKERRESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRPVPLSIAEVISTSLETINSIVQSITSAQLNDQNV  308 (603)
T ss_pred             HHHHHHHHHHHhhccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCCCCcchhhccCCccccccchhhhccccccCCcce
Confidence                                                                                            


Q ss_pred             ---------------------------cCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhH
Q 020259          235 ---------------------------SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNA  287 (328)
Q Consensus       235 ---------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~a  287 (328)
                                                 ....|++++...++++..++|.+++-||++-.....+++|+.++.|.|++|+|
T Consensus       309 ~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaaNiRa~if~ipmkS~Fdik~mAgnIipaIAtTNA  388 (603)
T KOG2013|consen  309 WTVDEGAVVFRLSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAANIRAHIFGIPMKSLFDIKQMAGNIIPAIATTNA  388 (603)
T ss_pred             eeeccccHHHHHHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHhhhhhhhhccchhhhhchHhHhcccchhhhhhhh
Confidence                                       12456778888999999999999999999988888899999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCceEEe
Q 020259          288 IISAACALETLKIASGCSKTLSNYLTY  314 (328)
Q Consensus       288 ivGG~~aqEviK~it~~~~pi~N~~~f  314 (328)
                      ||||+++.|.+|+|+|...-.++.|.+
T Consensus       389 iIagliv~eaiKvl~~~~~~~~~~f~~  415 (603)
T KOG2013|consen  389 IIAGLIVTEAIKVLGGDFDDCNMIFLA  415 (603)
T ss_pred             HHHHHHHHHHHHHhccchhcceeeEEc
Confidence            999999999999998887766655554

>PRK08223 hypothetical protein; Validated

Probab=100.00  E-value=3.1e-46  Score=340.28  Aligned_cols=240  Identities=21%  Similarity=0.214  Sum_probs=202.3

Q ss_pred             cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259           18 RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE   97 (328)
Q Consensus        18 ~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~   97 (328)
                      -.++|.||+.++|.++|++| ++++|+||||||+|++++++|+++|||+|+|+|+|.|+.+|++||++++.+|+|++||+
T Consensus         6 ~~~~ysRq~~~iG~e~Q~kL-~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve   84 (287)
T PRK08223          6 YDEAFCRNLGWITPTEQQRL-RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAE   84 (287)
T ss_pred             HHHHHhhhhhhcCHHHHHHH-hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHH
Confidence            35679999999999999999 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCH--HHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259           98 VAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSI--EARSYINAVACSFLEYETDDKPREETIKPMVDGG  174 (328)
Q Consensus        98 a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~  174 (328)
                      +++++++++||+++|++++..+.+.+ .++++++|+||+|+|++  ++|.++|+.|             ++.++|+|.++
T Consensus        85 ~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c-------------~~~~iP~V~~~  151 (287)
T PRK08223         85 VLAEMVRDINPELEIRAFPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAAC-------------QQRGIPALTAA  151 (287)
T ss_pred             HHHHHHHHHCCCCEEEEEecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHH-------------HHcCCCEEEEe
Confidence            99999999999999999999987655 67899999999999985  8999999999             67899999999


Q ss_pred             ecceeeeEEEEcCCCCCccccccCCCCC--C---------CCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCC
Q 020259          175 TEGFKGHARVIIPGVTPCFECTIWLFPP--Q---------VKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDD  243 (328)
Q Consensus       175 ~~G~~G~v~~~~p~~~~c~~c~~~~~~~--~---------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  243 (328)
                      +.|+.|++.++.|+ ++||+|+++.+++  .         ...|.|.-....-.+                         
T Consensus       152 ~~g~~gqv~v~~p~-~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl~~~-------------------------  205 (287)
T PRK08223        152 PLGMGTALLVFDPG-GMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYLADP-------------------------  205 (287)
T ss_pred             ccCCeEEEEEEcCC-CCchhhhcCCCCCCCchhhhcccCCcCCCccccCCccccc-------------------------
Confidence            99999999988885 8999999987332  1         122333211111000                         


Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCC--CceEEeecCcccc
Q 020259          244 PEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL--SNYLTYAQLSFFA  321 (328)
Q Consensus       244 ~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi--~N~~~fdg~~~~~  321 (328)
                       .              ..           .+-+...|...++|.++|+++|.|++|+|+|.+++.  .-+++||+.++..
T Consensus       206 -~--------------~~-----------~~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g~~~~~~~~~~~d~~~~~~  259 (287)
T PRK08223        206 -S--------------RV-----------DLENRTGPSTGLACQLCAGVVATEVLKILLGRGRVYAAPWFHQFDAYRSRY  259 (287)
T ss_pred             -c--------------cc-----------ccccccCCCccchHHHHHHHHHHHHHHHHhCCCCcCCCCeEEEEEcCCceE
Confidence             0              00           001124688899999999999999999999998874  5899999998865


Q ss_pred             cc
Q 020259          322 SA  323 (328)
Q Consensus       322 ~~  323 (328)
                      ..
T Consensus       260 ~~  261 (287)
T PRK08223        260 VR  261 (287)
T ss_pred             EE
Confidence            43

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=100.00  E-value=2.7e-46  Score=338.16  Aligned_cols=225  Identities=26%  Similarity=0.430  Sum_probs=197.7

Q ss_pred             CCCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHH
Q 020259           19 AGNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKA   96 (328)
Q Consensus        19 ~~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka   96 (328)
                      .+||+||+++  ||.++|++| ++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|++||++++++|+|++|+
T Consensus        10 ~~rY~Rqi~l~~~g~~~Q~~L-~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka   88 (245)
T PRK05690         10 MLRYNRQIILRGFDFDGQEKL-KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKV   88 (245)
T ss_pred             HHHHHHhccchhcCHHHHHHh-cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHH
Confidence            3689999987  999999999 6999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259           97 EVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT  175 (328)
Q Consensus        97 ~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~  175 (328)
                      ++++++|+++||+++++++...+++.+ .++++++|+||+|+|+.+.+.++|++|             +++++|+|.+++
T Consensus        89 ~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~-------------~~~~ip~v~~~~  155 (245)
T PRK05690         89 ESARAALARINPHIAIETINARLDDDELAALIAGHDLVLDCTDNVATRNQLNRAC-------------FAAKKPLVSGAA  155 (245)
T ss_pred             HHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHH-------------HHhCCEEEEeee
Confidence            999999999999999999999887644 568899999999999999999999999             678999999999


Q ss_pred             cceeeeEEEEcCCC-CCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHH
Q 020259          176 EGFKGHARVIIPGV-TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEA  254 (328)
Q Consensus       176 ~G~~G~v~~~~p~~-~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  254 (328)
                      .|+.|++.+..|+. ++||+|.++..++..  ..|                                             
T Consensus       156 ~g~~G~v~~~~~~~~~~c~~c~~~~~~~~~--~~~---------------------------------------------  188 (245)
T PRK05690        156 IRMEGQVTVFTYQDDEPCYRCLSRLFGENA--LTC---------------------------------------------  188 (245)
T ss_pred             ccCCceEEEEecCCCCceeeeccCCCCCCC--CCc---------------------------------------------
Confidence            99999999888764 799999975322100  000                                             


Q ss_pred             HHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCC-ceEEeecCccccccccc
Q 020259          255 VKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYAQLSFFASAMQF  326 (328)
Q Consensus       255 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~-N~~~fdg~~~~~~~~~~  326 (328)
                                            ...+.++|+++++|+++|+|++|+|+|.++|+. -+++||..+..-..+++
T Consensus       189 ----------------------~~~gv~~~~~~~~~~~~a~e~ik~l~g~~~~l~g~l~~~d~~~~~~~~~~~  239 (245)
T PRK05690        189 ----------------------VEAGVMAPLVGVIGSLQAMEAIKLLTGYGEPLSGRLLLYDAMTMQFREMKL  239 (245)
T ss_pred             ----------------------ccCCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEEc
Confidence                                  012457999999999999999999999988875 56779999877665543

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=100.00  E-value=5.5e-46  Score=388.44  Aligned_cols=284  Identities=19%  Similarity=0.245  Sum_probs=226.8

Q ss_pred             CCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHH
Q 020259           19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV   98 (328)
Q Consensus        19 ~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a   98 (328)
                      .++|+||+++||.++|+|| ++++|+|+|+||+|+|+||||+++|||+|+|+|+|.|+.+||+||||++++|+|++||++
T Consensus         4 ~~lYsRQi~l~G~eaq~kL-~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea   82 (1008)
T TIGR01408         4 EALYSRQLYVLGDEAMQKM-AKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEA   82 (1008)
T ss_pred             HhhhhhHHHhcCHHHHHHH-hhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHH
Confidence            4679999999999999999 699999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCcccccc--ceEEEeeec
Q 020259           99 AAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETI--KPMVDGGTE  176 (328)
Q Consensus        99 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--~p~i~~~~~  176 (328)
                      ++++|+++||.|+|++++..+   +.+++++||+||+|.++.+.+..+|++|             ++++  +|||.+++.
T Consensus        83 ~~~~L~eLNp~V~V~~~~~~l---~~e~l~~fdvVV~t~~~~~~~~~in~~c-------------r~~~~~I~fI~~~~~  146 (1008)
T TIGR01408        83 VVKKLAELNPYVHVSSSSVPF---NEEFLDKFQCVVLTEMSLPLQKEINDFC-------------HSQCPPIAFISADVR  146 (1008)
T ss_pred             HHHHHHHHCCCceEEEecccC---CHHHHcCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCeEEEEEeec
Confidence            999999999999999998766   3679999999999999999999999999             6777  999999999


Q ss_pred             ceeeeEEEEcCCCCCccccccCCCCCCCC---------------------------------------------------
Q 020259          177 GFKGHARVIIPGVTPCFECTIWLFPPQVK---------------------------------------------------  205 (328)
Q Consensus       177 G~~G~v~~~~p~~~~c~~c~~~~~~~~~~---------------------------------------------------  205 (328)
                      |++|+++.+++.+..|+.-. +..|....                                                   
T Consensus       147 G~~G~vf~D~g~~f~~~d~~-ge~p~~~~i~~i~~~~~g~Vt~~~~~~h~l~~gd~V~f~ev~gm~~lN~~~~~~i~~~~  225 (1008)
T TIGR01408       147 GLFGSLFCDFGDEFEVLDTD-GEEPKTGFIASITQANPGIVTCLENHRHKLETGDFVTFREVNGMTGLNDGSPRKITVIS  225 (1008)
T ss_pred             ceEEEEEecCCCceEEEeCC-CCCCCcccccccccCCCceEEeecCcccCCcCCCEEEEeecccccccCCCCceeEEecC
Confidence            99999999887654443310 00000000                                                   


Q ss_pred             -C----------------------------CcccccC---CC-----------CChhhHHHHHHHHhhhhhhcCCCCCCC
Q 020259          206 -F----------------------------PLCTLAE---TP-----------RTAAHCIEYAHLIKWDEVHSGKSFDPD  242 (328)
Q Consensus       206 -~----------------------------~~~~~~~---~~-----------~~~~~~i~~~~~~~~~~~~~~~~~~~~  242 (328)
                       .                            .+.++..   .|           +.+...+.+..+..|...+++.|. ..
T Consensus       226 ~~~f~i~dt~~~~~y~~gG~~~qvK~p~~~~Fksl~~~l~~p~~~~~d~~k~~r~~~lh~~~~aL~~f~~~~g~~P~-~~  304 (1008)
T TIGR01408       226 PYSFSIGDTTELGPYLHGGIATQVKTPKTVFFKSLREQLKDPKCLIVDFSKPERPPEIHTAFQALDQFQEKYSRKPN-VG  304 (1008)
T ss_pred             CceEEeccccccchhhcCceEEEEeccccccccCHHHHHcCCcccccchhhcCCchhHHHHHHHHHHHHHHcCCCCC-CC
Confidence             0                            0000000   01           111111233344555555543333 23


Q ss_pred             ChhHHHHHHHHHHHHHHHhCCCC--CchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCccc
Q 020259          243 DPEHMQWVYSEAVKRAELFGIPG--VTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFF  320 (328)
Q Consensus       243 ~~~~~~~l~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~  320 (328)
                      +.++.+.+...++++.++.++..  .+..+++.++..+..+++|+||++||++||||+|.+||++.|++|||+||+.++.
T Consensus       305 ~~~d~~~~~~~a~~i~~~~~~~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKaisgKf~Pi~q~~~~D~~e~l  384 (1008)
T TIGR01408       305 CQQDAEELLKLATSISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVTGKFSPLCQWFYFDSAESL  384 (1008)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhcCCCCCceeeEEeehhhhC
Confidence            66777888888888888777643  3446888888888889999999999999999999999999999999999998765


Q ss_pred             c
Q 020259          321 A  321 (328)
Q Consensus       321 ~  321 (328)
                      .
T Consensus       385 ~  385 (1008)
T TIGR01408       385 P  385 (1008)
T ss_pred             C
Confidence            4

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PRK08328 hypothetical protein; Provisional

Probab=100.00  E-value=5.9e-46  Score=333.32  Aligned_cols=221  Identities=28%  Similarity=0.372  Sum_probs=197.6

Q ss_pred             CCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCC-hHHHH
Q 020259           20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGK-PKAEV   98 (328)
Q Consensus        20 ~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~-~Ka~a   98 (328)
                      ++|+||+++||.++|++| ++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++||++++++|+|+ +|+++
T Consensus         8 ~ry~Rq~~~~g~~~q~~L-~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~   86 (231)
T PRK08328          8 ERYDRQIMIFGVEGQEKL-KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLS   86 (231)
T ss_pred             HHHhhHHHhcCHHHHHHH-hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHH
Confidence            689999999999999999 6999999999999999999999999999999999999999999999999999999 59999


Q ss_pred             HHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259           99 AAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG  177 (328)
Q Consensus        99 ~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G  177 (328)
                      ++++++++||+++|+++...+.+.+ .++++++|+||+|+|+.+++..++++|             +++++|+|.+++.|
T Consensus        87 a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~-------------~~~~ip~i~g~~~g  153 (231)
T PRK08328         87 AKWKLERFNSDIKIETFVGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYA-------------HKKGIPLVHGAVEG  153 (231)
T ss_pred             HHHHHHHhCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEeecc
Confidence            9999999999999999988876543 568899999999999999999999999             67899999999999


Q ss_pred             eeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHHHH
Q 020259          178 FKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKR  257 (328)
Q Consensus       178 ~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  257 (328)
                      +.|++.+..|+.++||+|.++..++     .+                                                
T Consensus       154 ~~G~v~~~~p~~~~c~~~~~~~~~~-----~~------------------------------------------------  180 (231)
T PRK08328        154 TYGQVTTIVPGKTKRLREIFPKVKK-----KK------------------------------------------------  180 (231)
T ss_pred             CEEEEEEECCCCCCCHHHhCCCCCC-----cc------------------------------------------------
Confidence            9999999999999999998742110     00                                                


Q ss_pred             HHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCce-EEeecCccccccccc
Q 020259          258 AELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNY-LTYAQLSFFASAMQF  326 (328)
Q Consensus       258 ~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~-~~fdg~~~~~~~~~~  326 (328)
                                         ...|.++|+++++|+++|+|++|+|+|.++|+.|. ++||..+..-..++|
T Consensus       181 -------------------~~~~~~~~~~~ii~~~~a~e~~k~l~g~~~~~~~~l~~~d~~~~~~~~~~~  231 (231)
T PRK08328        181 -------------------GKFPILGATAGVIGSIQAMEVIKLITGYGEPLLNKLLIVDLANNVFEVVEL  231 (231)
T ss_pred             -------------------ccCCcCchHHHHHHHHHHHHHHHHHhCCCCcccCeEEEEECCCCEEEEeeC
Confidence                               00134789999999999999999999998888665 779999988777664

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=7.2e-46  Score=352.23  Aligned_cols=228  Identities=25%  Similarity=0.350  Sum_probs=201.1

Q ss_pred             cCCCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChH
Q 020259           18 RAGNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK   95 (328)
Q Consensus        18 ~~~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~K   95 (328)
                      ..++|+||+++  ||.++|++| ++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+|++|
T Consensus         5 ~~~rY~Rq~~l~~~g~~~q~~L-~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~K   83 (355)
T PRK05597          5 DIARYRRQIMLGEIGQQGQQSL-FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPK   83 (355)
T ss_pred             HHhHhhheechhhcCHHHHHHH-hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChH
Confidence            34689999999  999999999 699999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259           96 AEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG  174 (328)
Q Consensus        96 a~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~  174 (328)
                      |++++++|+++||.++|+++...+...+ .++++++|+||+|+|+...|..+|+.|             ++.++|+|.++
T Consensus        84 a~~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c-------------~~~~ip~v~~~  150 (355)
T PRK05597         84 AESAREAMLALNPDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA-------------ARLGIPHVWAS  150 (355)
T ss_pred             HHHHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEE
Confidence            9999999999999999999998887543 678999999999999999999999999             67899999999


Q ss_pred             ecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHH
Q 020259          175 TEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEA  254 (328)
Q Consensus       175 ~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  254 (328)
                      +.|+.|++.++.|+.++||+|+++..++....+.|.                                            
T Consensus       151 ~~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~c~--------------------------------------------  186 (355)
T PRK05597        151 ILGFDAQLSVFHAGHGPIYEDLFPTPPPPGSVPSCS--------------------------------------------  186 (355)
T ss_pred             EecCeEEEEEEcCCCCCCHHHhCCCCCCccCCCCcc--------------------------------------------
Confidence            999999999888888999999986433222222221                                            


Q ss_pred             HHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCc-eEEeecCccccccccc
Q 020259          255 VKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN-YLTYAQLSFFASAMQF  326 (328)
Q Consensus       255 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N-~~~fdg~~~~~~~~~~  326 (328)
                                             ..+.++|+.+++|+++|.|++|+|+|.++|+.| ++.||..+.....+.+
T Consensus       187 -----------------------~~gv~g~~~~~~g~~~a~e~ik~l~g~~~~l~~~l~~~d~~~~~~~~~~~  236 (355)
T PRK05597        187 -----------------------QAGVLGPVVGVVGSAMAMEALKLITGVGTPLIGKLGYYDSLDGTWEYIPV  236 (355)
T ss_pred             -----------------------ccCcchhHHHHHHHHHHHHHHHHHhCCCCcCcCeEEEEECCCCeEEEEec
Confidence                                   124589999999999999999999998877665 6679998876655543

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=100.00  E-value=1.3e-45  Score=323.78  Aligned_cols=191  Identities=21%  Similarity=0.306  Sum_probs=179.2

Q ss_pred             CCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCC--CCCCChHHHH
Q 020259           21 NLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRM--EDVGKPKAEV   98 (328)
Q Consensus        21 ~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~--~diG~~Ka~a   98 (328)
                      +||||+++||.++|++| ++++|+|+|+||+|+|++|||+++||++|+|+|+|.|+++|++||||+++  +|+|++||++
T Consensus         1 ~y~Rqi~l~G~~~q~~L-~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~   79 (198)
T cd01485           1 LYDRQIRLWGDEAQNKL-RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAA   79 (198)
T ss_pred             CccceeeccCHHHHHHH-hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHH
Confidence            69999999999999999 69999999999999999999999999999999999999999999999998  8999999999


Q ss_pred             HHHHHHhhCCCcEEEEEecccC---CcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259           99 AAKRVMERVSGVNIVPHFCRIE---DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT  175 (328)
Q Consensus        99 ~~~~l~~lnp~v~v~~~~~~~~---~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~  175 (328)
                      ++++|+++||+++++++.+.+.   +...++++++|+||+|.|+...+.++|++|             +++++|+|.+++
T Consensus        80 ~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c-------------~~~~ip~i~~~~  146 (198)
T cd01485          80 SYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVC-------------RKHHIPFISCAT  146 (198)
T ss_pred             HHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEEe
Confidence            9999999999999999988774   345788999999999999999999999999             688999999999


Q ss_pred             cceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHH
Q 020259          176 EGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAV  255 (328)
Q Consensus       176 ~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  255 (328)
                      .|+.|++++++                                                                     
T Consensus       147 ~G~~G~v~~~~---------------------------------------------------------------------  157 (198)
T cd01485         147 YGLIGYAFFDF---------------------------------------------------------------------  157 (198)
T ss_pred             ecCEEEEEEch---------------------------------------------------------------------
Confidence            99999987421                                                                     


Q ss_pred             HHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCccccc
Q 020259          256 KRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFAS  322 (328)
Q Consensus       256 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~~~  322 (328)
                                                  |+++++|+++++|++|+++|+++|+.++++||+.+..++
T Consensus       158 ----------------------------p~~~~~~~~~~~e~~k~l~~~~~~~~~~~~~d~~~~~~~  196 (198)
T cd01485         158 ----------------------------PIAAFLGGVVAQEAIKSISGKFTPLNNLYIYDGFESTGP  196 (198)
T ss_pred             ----------------------------hHHHHHHHHHHHHHHHHHhCCCCccCcEEEEECccccCC
Confidence                                        678999999999999999999999999999999998876

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK07411 hypothetical protein; Validated

Probab=100.00  E-value=1.1e-45  Score=354.79  Aligned_cols=227  Identities=28%  Similarity=0.366  Sum_probs=200.5

Q ss_pred             CCCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHH
Q 020259           19 AGNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKA   96 (328)
Q Consensus        19 ~~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka   96 (328)
                      .++|+||+++  ||.++|++| ++++|+||||||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+|++||
T Consensus        16 ~~ry~Rq~~l~~~g~~~q~~L-~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka   94 (390)
T PRK07411         16 YERYSRHLILPEVGLEGQKRL-KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKI   94 (390)
T ss_pred             HHHhhceechhhcCHHHHHHH-hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHH
Confidence            3689999999  999999999 6999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCcEEEEEecccCCc-chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259           97 EVAAKRVMERVSGVNIVPHFCRIEDK-DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT  175 (328)
Q Consensus        97 ~a~~~~l~~lnp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~  175 (328)
                      ++++++|+++||.++|+++...+... ..++++++|+||+|+|+.+.|.++|++|             ++.++|++++++
T Consensus        95 ~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~-------------~~~~~p~v~~~~  161 (390)
T PRK07411         95 ESAKNRILEINPYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC-------------VLLNKPNVYGSI  161 (390)
T ss_pred             HHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEEE
Confidence            99999999999999999999988764 3678999999999999999999999999             677899999999


Q ss_pred             cceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHH
Q 020259          176 EGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAV  255 (328)
Q Consensus       176 ~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  255 (328)
                      .|+.|++.++.|+.++||+|+++..++....+.|.                                             
T Consensus       162 ~g~~g~~~v~~~~~~~c~~c~~~~~~~~~~~~~c~---------------------------------------------  196 (390)
T PRK07411        162 FRFEGQATVFNYEGGPNYRDLYPEPPPPGMVPSCA---------------------------------------------  196 (390)
T ss_pred             ccCEEEEEEECCCCCCChHHhcCCCCCcccCCCCc---------------------------------------------
Confidence            99999999887778999999986433221122220                                             


Q ss_pred             HHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCC-ceEEeecCccccccccc
Q 020259          256 KRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYAQLSFFASAMQF  326 (328)
Q Consensus       256 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~-N~~~fdg~~~~~~~~~~  326 (328)
                                            ..+.++|+++++|.++|+|++|+|+|.++|+. .+++||+.+.....+.+
T Consensus       197 ----------------------~~gvlg~~~~~~g~~~a~eaik~l~g~~~~l~~~l~~~d~~~~~~~~~~~  246 (390)
T PRK07411        197 ----------------------EGGVLGILPGIIGVIQATETIKIILGAGNTLSGRLLLYNALDMKFRELKL  246 (390)
T ss_pred             ----------------------cCCcCcchHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEECCCCceeEEec
Confidence                                  12458999999999999999999999876655 56779999887766654

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=100.00  E-value=4.9e-45  Score=328.70  Aligned_cols=224  Identities=26%  Similarity=0.446  Sum_probs=195.0

Q ss_pred             CCCCCCCCCcc--HHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259           20 GNLVGPTFEPG--TELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE   97 (328)
Q Consensus        20 ~~~~rq~~l~G--~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~   97 (328)
                      ++|+||+++||  .++|++| ++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|++||++++++|+|++||+
T Consensus         3 ~ry~Rq~~l~~~g~~~q~~L-~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~   81 (240)
T TIGR02355         3 LRYNRQIILRGFDFDGQEAL-KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVE   81 (240)
T ss_pred             cceeeeeecccCCHHHHHHH-hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHH
Confidence            68999999985  8999999 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCcEEEEEecccCCc-chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeec
Q 020259           98 VAAKRVMERVSGVNIVPHFCRIEDK-DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE  176 (328)
Q Consensus        98 a~~~~l~~lnp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~  176 (328)
                      +++++|+++||++++++++..+++. ..++++++|+||+|+|+++.+.++|++|             ++.++|+|.+++.
T Consensus        82 ~a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~-------------~~~~ip~v~~~~~  148 (240)
T TIGR02355        82 SAKDALTQINPHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQC-------------FAAKVPLVSGAAI  148 (240)
T ss_pred             HHHHHHHHHCCCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHH-------------HHcCCCEEEEEec
Confidence            9999999999999999999888754 3678899999999999999999999999             6789999999999


Q ss_pred             ceeeeEEEEc-CCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHH
Q 020259          177 GFKGHARVII-PGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAV  255 (328)
Q Consensus       177 G~~G~v~~~~-p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  255 (328)
                      |+.|++.+.. ++.++||+|..+.+++..  ..|                                              
T Consensus       149 g~~G~v~~~~~~~~~~c~~C~~~~~~~~~--~~~----------------------------------------------  180 (240)
T TIGR02355       149 RMEGQVSVFTYQDGEPCYRCLSRLFGENA--LSC----------------------------------------------  180 (240)
T ss_pred             ccEeEEEEEecCCCCCccccccccCCCCC--CCc----------------------------------------------
Confidence            9999987654 456799999875332100  000                                              


Q ss_pred             HHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCC-CceEEeecCccccccccc
Q 020259          256 KRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL-SNYLTYAQLSFFASAMQF  326 (328)
Q Consensus       256 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi-~N~~~fdg~~~~~~~~~~  326 (328)
                                           ...+.++|+++++|+++|+|++|+|+|.++|+ +..+.||..+.....+++
T Consensus       181 ---------------------~~~gv~~p~~~~~~~~~a~e~ik~l~g~~~~l~g~ll~~d~~~~~~~~~~~  231 (240)
T TIGR02355       181 ---------------------VEAGVMAPVVGVVGSLQAMEAIKVLAGIGKPLSGKILMIDAMTMSFREMKL  231 (240)
T ss_pred             ---------------------cccCccchHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCEEEEEec
Confidence                                 01245899999999999999999999988887 456779999887766554

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=100.00  E-value=7.9e-45  Score=345.96  Aligned_cols=227  Identities=30%  Similarity=0.445  Sum_probs=199.9

Q ss_pred             CCCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHH
Q 020259           19 AGNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKA   96 (328)
Q Consensus        19 ~~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka   96 (328)
                      .+||+||+++  ||.++|++| ++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|++||++|+++|+|++||
T Consensus        19 ~~ry~Rqi~l~~~g~~~q~~l-~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka   97 (370)
T PRK05600         19 LRRTARQLALPGFGIEQQERL-HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKV   97 (370)
T ss_pred             HHHhhcccchhhhCHHHHHHh-cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHH
Confidence            4689999999  999999999 7999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259           97 EVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT  175 (328)
Q Consensus        97 ~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~  175 (328)
                      ++++++|+++||+++++++...+...+ .++++++|+||+|+|+.++|.++|++|             ++.++|+|.+++
T Consensus        98 ~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~-------------~~~~iP~v~~~~  164 (370)
T PRK05600         98 EVAAERLKEIQPDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA-------------EITGTPLVWGTV  164 (370)
T ss_pred             HHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEEE
Confidence            999999999999999999999887643 678999999999999999999999999             678999999999


Q ss_pred             cceeeeEEEEcCC---CCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHH
Q 020259          176 EGFKGHARVIIPG---VTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYS  252 (328)
Q Consensus       176 ~G~~G~v~~~~p~---~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  252 (328)
                      .|+.|++.++.|+   .++||+|+++..++....+.|+                                          
T Consensus       165 ~g~~G~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~c~------------------------------------------  202 (370)
T PRK05600        165 LRFHGELAVFNSGPDHRGVGLRDLFPEQPSGDSIPDCA------------------------------------------  202 (370)
T ss_pred             ecCEEEEEEEecCCCCCCCCcHhhCCCCCccccCCCCc------------------------------------------
Confidence            9999999887765   3789999985433211111120                                          


Q ss_pred             HHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCc-eEEeecCccccccccc
Q 020259          253 EAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN-YLTYAQLSFFASAMQF  326 (328)
Q Consensus       253 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N-~~~fdg~~~~~~~~~~  326 (328)
                                               ..+.++|+.+++|+++|.|++|+|+|.++|+.| .+.||+.+..-..+++
T Consensus       203 -------------------------~~gvlg~~~~~ig~~~a~eaik~l~g~g~~l~g~ll~~d~~~~~~~~~~~  252 (370)
T PRK05600        203 -------------------------TAGVLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYDALTATTRSFRV  252 (370)
T ss_pred             -------------------------cCCcchhHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCEEEEEEe
Confidence                                     124589999999999999999999998777665 8999999987766554

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=100.00  E-value=6e-45  Score=320.66  Aligned_cols=165  Identities=31%  Similarity=0.494  Sum_probs=156.6

Q ss_pred             CCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHH
Q 020259           21 NLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV   98 (328)
Q Consensus        21 ~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a   98 (328)
                      |||||+++  ||.++|++| ++++|+|+|+||+|++++++|+++|+++|+|+|+|.|+++|++||+||+++|+|++||++
T Consensus         1 rY~Rqi~l~~~g~~~q~kl-~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~   79 (202)
T TIGR02356         1 RYARQLLLPDIGEEGQQRL-LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEV   79 (202)
T ss_pred             CCcceecchhcCHHHHHHh-cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHH
Confidence            69999999  999999999 699999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259           99 AAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG  177 (328)
Q Consensus        99 ~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G  177 (328)
                      ++++|+++||+++++.++..+...+ .++++++|+||+|+|+.+.+.++++.|             +++++|+|.+++.|
T Consensus        80 ~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~-------------~~~~ip~i~~~~~g  146 (202)
T TIGR02356        80 AAQRLRELNSDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC-------------VALGTPLISAAVVG  146 (202)
T ss_pred             HHHHHHHhCCCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEEecc
Confidence            9999999999999999998887543 568899999999999999999999999             67899999999999


Q ss_pred             eeeeEEEEcCC-CCCccccccCC
Q 020259          178 FKGHARVIIPG-VTPCFECTIWL  199 (328)
Q Consensus       178 ~~G~v~~~~p~-~~~c~~c~~~~  199 (328)
                      +.|++.++.|+ .++||+|.++.
T Consensus       147 ~~G~~~~~~p~~~~~c~~c~~~~  169 (202)
T TIGR02356       147 FGGQLMVFDPGGEGPCLRCLFPD  169 (202)
T ss_pred             CeEEEEEEeCCCCCCChhhcCCC
Confidence            99999999888 79999999853

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-45  Score=339.45  Aligned_cols=290  Identities=19%  Similarity=0.223  Sum_probs=237.4

Q ss_pred             cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259           18 RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE   97 (328)
Q Consensus        18 ~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~   97 (328)
                      -..+||||+|+||.++|..| ..++|+++|||++|+|++|||+++|||++|++|...|+.+|++.+||...+++|++||+
T Consensus         6 ~~~kYDRQlRlwge~gQ~~l-e~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~   84 (523)
T KOG2016|consen    6 PKTKYDRQLRLWGEEGQAAL-ESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAE   84 (523)
T ss_pred             hhhHHHHHHHHHHHHhHhhh-hhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHH
Confidence            45789999999999999999 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCcEEEEEecccC---CcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259           98 VAAKRVMERVSGVNIVPHFCRIE---DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG  174 (328)
Q Consensus        98 a~~~~l~~lnp~v~v~~~~~~~~---~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~  174 (328)
                      +.++.|+++||.|+-....+..+   ..+.+++++|++|+.+--+.+....+.++|             |+.++|++.+.
T Consensus        85 a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l-------------~~~~vpll~~r  151 (523)
T KOG2016|consen   85 ATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEIL-------------REANVPLLLTR  151 (523)
T ss_pred             HHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHH-------------HhcCCceEEEe
Confidence            99999999999998776655443   457899999999999988888888899999             78999999999


Q ss_pred             ecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCC--------------------hhhHHHHHHHHhhhhhh
Q 020259          175 TEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRT--------------------AAHCIEYAHLIKWDEVH  234 (328)
Q Consensus       175 ~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~i~~~~~~~~~~~~  234 (328)
                      +.|+.|++++.+..|     |+.+.+|+....+++.-.++|..                    |..-+.+..+..|...+
T Consensus       152 s~Gl~G~iRI~ikEH-----~iieshPD~~~~DLRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~  226 (523)
T KOG2016|consen  152 SYGLAGTIRISIKEH-----TIIESHPDNPLDDLRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQH  226 (523)
T ss_pred             eecceEEEEEEeeec-----cccccCCCCcccccccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhh
Confidence            999999999998775     46777777654444443333332                    22223444555666555


Q ss_pred             --------------------------------------------------------------------------------
Q 020259          235 --------------------------------------------------------------------------------  234 (328)
Q Consensus       235 --------------------------------------------------------------------------------  234 (328)
                                                                                                      
T Consensus       227 n~~~p~t~~ekk~fkd~i~~~~~~~DeeNyeEA~~a~~~Af~~~~i~ssv~dil~d~~c~~~~~~s~~FWim~~aLk~Fv  306 (523)
T KOG2016|consen  227 NGNLPSTYDEKKEFKDLIRSEMGKADEENYEEAIKAVNKAFAPTQIPSSVKDILHDDRCAQIGKDSSDFWIMAAALKEFV  306 (523)
T ss_pred             cCCCCccHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHhcccCCchhHHHHhcChHHHHhcCCCcHHHHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------------
Q 020259          235 --------------------------------------------------------------------------------  234 (328)
Q Consensus       235 --------------------------------------------------------------------------------  234 (328)
                                                                                                      
T Consensus       307 ~~e~~g~lPL~GtlPDM~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~  386 (523)
T KOG2016|consen  307 LKEEGGFLPLRGTLPDMTSSTEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRG  386 (523)
T ss_pred             cccCCCccCCCCCCCccccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeec
Confidence                                                                                            


Q ss_pred             -----------------------------------------cCCCCCCC--ChhHHHHHHHHHHHHHHHhCCCC--Cchh
Q 020259          235 -----------------------------------------SGKSFDPD--DPEHMQWVYSEAVKRAELFGIPG--VTYS  269 (328)
Q Consensus       235 -----------------------------------------~~~~~~~~--~~~~~~~l~~~~~~~~~~~~i~~--~~~~  269 (328)
                                                               ...+++.+  -..+...+...+.....++|.++  ...+
T Consensus       387 ~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG~~~v~~D~~~lks~a~~~lse~g~~~~~v~d~  466 (523)
T KOG2016|consen  387 RTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPGEGPVEIDITKLKSIAASLLSELGLDGNAVTDD  466 (523)
T ss_pred             chhhhhhcccchhhhhhccccccchhHHHHHHHHHHHHHHHHhcCCCCCCccchhhHHHHHHHHHHHHHhccCcccCcHH
Confidence                                                     11122221  12345555555666777888885  3336


Q ss_pred             hhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCccccccccc
Q 020259          270 LTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFASAMQF  326 (328)
Q Consensus       270 ~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~~~~~~~  326 (328)
                      .+.++++....+++.++|++||++|||+||+||+|+.|++|+|+|||++...-+|.+
T Consensus       467 ~i~E~cR~gaaElH~VsAfiGGiaaQEvIKLiTkQyvPidNTFIfnGi~~~SaT~Kl  523 (523)
T KOG2016|consen  467 AIHEICRFGAAELHVVSAFIGGIAAQEVIKLITKQYVPIDNTFIFNGITQESATFKL  523 (523)
T ss_pred             HHHHHHhcCCchhHHHHHHHhhHHHHHHHHHHHhceecccceeEecccccccceecC
Confidence            889999999999999999999999999999999999999999999999998877653

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=100.00  E-value=2.9e-44  Score=345.59  Aligned_cols=227  Identities=27%  Similarity=0.411  Sum_probs=197.5

Q ss_pred             CCCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHH
Q 020259           19 AGNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKA   96 (328)
Q Consensus        19 ~~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka   96 (328)
                      .++|+||+++  ||.++|++| ++++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+|++||
T Consensus        20 ~~ry~Rq~~l~~~g~~~q~~L-~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka   98 (392)
T PRK07878         20 VARYSRHLIIPDVGVDGQKRL-KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKA   98 (392)
T ss_pred             HHHhhheechhhcCHHHHHHH-hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHH
Confidence            3789999999  999999999 6999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259           97 EVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT  175 (328)
Q Consensus        97 ~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~  175 (328)
                      ++++++|+++||+++|+++...++..+ .++++++|+||+|+|+...+.++|++|             ++.++|+|.+++
T Consensus        99 ~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~-------------~~~~~p~v~~~~  165 (392)
T PRK07878         99 QSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQYDLILDGTDNFATRYLVNDAA-------------VLAGKPYVWGSI  165 (392)
T ss_pred             HHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhcCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEEe
Confidence            999999999999999999998887543 678999999999999999999999999             678999999999


Q ss_pred             cceeeeEEEEcC----CCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHH
Q 020259          176 EGFKGHARVIIP----GVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVY  251 (328)
Q Consensus       176 ~G~~G~v~~~~p----~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  251 (328)
                      .|+.|+++++.+    +.++||+|.++..+.....+.|.                                         
T Consensus       166 ~g~~G~v~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~-----------------------------------------  204 (392)
T PRK07878        166 YRFEGQASVFWEDAPDGLGLNYRDLYPEPPPPGMVPSCA-----------------------------------------  204 (392)
T ss_pred             ccCEEEEEEEecCCCCCCCCeeeeecCCCCCccCCCCCc-----------------------------------------
Confidence            999999997764    37899999875322211111110                                         


Q ss_pred             HHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCC-CceEEeecCccccccccc
Q 020259          252 SEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL-SNYLTYAQLSFFASAMQF  326 (328)
Q Consensus       252 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi-~N~~~fdg~~~~~~~~~~  326 (328)
                                                ..+.++|+++++|+++|+|++|+|+|.++|+ .-+++||+.+..-..+++
T Consensus       205 --------------------------~~gv~g~~~~~~g~~~a~e~ik~l~g~~~~~~~~l~~~d~~~~~~~~~~~  254 (392)
T PRK07878        205 --------------------------EGGVLGVLCASIGSIMGTEAIKLITGIGEPLLGRLMVYDALEMTYRTIKI  254 (392)
T ss_pred             --------------------------cCCccchHHHHHHHHHHHHHHHHHhCCCCCCcCcEEEEECCCCceeeEee
Confidence                                      0235899999999999999999999988776 567789999887665543

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.9e-45  Score=360.61  Aligned_cols=282  Identities=35%  Similarity=0.566  Sum_probs=252.1

Q ss_pred             ccchhhhhhhhcCC---------------CCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCC-----e
Q 020259            7 SRSRDLDKLLLRAG---------------NLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----N   66 (328)
Q Consensus         7 ~~~~~~~~~~~~~~---------------~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg-----~   66 (328)
                      -||.|+|.++..++               |||.|+.++|.+.|+|| .+.++++||+|++|||.+||++++|+|     .
T Consensus       383 ~Q~lYfDale~LP~d~~~~~e~d~~prgsRYD~qiavfG~~fqeKL-~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~  461 (1013)
T KOG2012|consen  383 KQWLYFDALESLPSDNLPPSEEDCQPRGSRYDGQIAVFGAKFQEKL-ADQKVFLVGAGAIGCELLKNFALMGVGCGNSGK  461 (1013)
T ss_pred             hHheehhhHhhCCCcCCCCCHHHcccccCccccchhhhchHHHHHH-hhCcEEEEccchhhHHHHHhhhheeeccCCCCc
Confidence            49999998877653               89999999999999999 699999999999999999999999994     7


Q ss_pred             EEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC-----cchhhhccCCEEEecCCCHH
Q 020259           67 LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED-----KDISFYNDFNIIVLGLDSIE  141 (328)
Q Consensus        67 itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~-----~~~~~~~~~dvVi~~~d~~~  141 (328)
                      |++.|+|.++.+||+|||||++.|||++|+++++.....+||+++|+++..++..     .+++||.+-|+|.++.||.+
T Consensus       462 ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVd  541 (1013)
T KOG2012|consen  462 ITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVD  541 (1013)
T ss_pred             eEEeccchhhhccccceeeccccccCchHHHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchh
Confidence            9999999999999999999999999999999999999999999999999998865     35889999999999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhH
Q 020259          142 ARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHC  221 (328)
Q Consensus       142 ~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (328)
                      +|+++++-|             .-+.+|++.+|+.|..|..++++|..|..|....  .|+++++|.|+++++|...+|+
T Consensus       542 AR~YvD~RC-------------v~~~kPLLESGTlGTKGntQVvvPhlTEsY~SS~--DPPEksiP~CTlknFPn~IeHT  606 (1013)
T KOG2012|consen  542 ARRYVDRRC-------------VYYRKPLLESGTLGTKGNTQVVVPHLTESYGSSR--DPPEKSIPVCTLKSFPNAIEHT  606 (1013)
T ss_pred             hhhhhhhhh-------------hhhccchhhccCcCCccceeEEeccccccccccC--CCcccCCceeeeccCchHHHHH
Confidence            999999999             3557999999999999999999999999997554  4888999999999999999999


Q ss_pred             HHHHHHH--------------------------------------------------------hhhhhh-----------
Q 020259          222 IEYAHLI--------------------------------------------------------KWDEVH-----------  234 (328)
Q Consensus       222 i~~~~~~--------------------------------------------------------~~~~~~-----------  234 (328)
                      ++|+...                                                        .|...+           
T Consensus       607 iqWAR~eFEg~F~~~~e~vN~yls~p~f~e~sl~~~~~~~~~~~l~~v~~~l~~rp~~~~dCv~warl~f~~~f~~~ikq  686 (1013)
T KOG2012|consen  607 IQWARDEFEGLFKQSAENVNKYLSDPVFYETSLKLIGEPQSLETLERVVDCLSERPQNWQDCVEWARLHFEKYFHNRIKQ  686 (1013)
T ss_pred             HHHHHHHHHHHhhCCHHHHHHHhcCchHHHHHHhhccCcchhHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHhhHHHHH
Confidence            9998541                                                        111100           


Q ss_pred             --------------------------------------------------------------------------------
Q 020259          235 --------------------------------------------------------------------------------  234 (328)
Q Consensus       235 --------------------------------------------------------------------------------  234 (328)
                                                                                                      
T Consensus       687 Ll~~FP~d~~t~~G~pFWs~pKr~P~pl~Fd~n~~~hl~fv~Aaa~l~a~~~gi~~~~d~~~~~~~~~~v~~p~f~P~~~  766 (1013)
T KOG2012|consen  687 LLHNFPPDAKTSDGAPFWSGPKRCPRPLEFDVNDPLHLNFVQAAANLRAEVYGIPGSQDREALAELLERVIVPEFEPKQK  766 (1013)
T ss_pred             hhcCCCcccccCCCCcCCCCCCCCCCceeecCCCchhHHHHHHHHHHHHHhcCCCcccCHHHhhhhHhhcCCCccccccC
Confidence                                                                                            


Q ss_pred             -----------------------------------------cCCCCCCCCh--hHHHHHHHHHHHHHHHhCCCCCchhhh
Q 020259          235 -----------------------------------------SGKSFDPDDP--EHMQWVYSEAVKRAELFGIPGVTYSLT  271 (328)
Q Consensus       235 -----------------------------------------~~~~~~~~~~--~~~~~l~~~~~~~~~~~~i~~~~~~~~  271 (328)
                                                               .+..+.+++.  -|++++..++|++|++|.|++.+....
T Consensus       767 ~~i~~~~~~~~~~~~s~d~~~~i~~l~~~l~~~~~~~~~~~~p~~FEKDDDsN~H~dfi~aasnlRA~nY~I~~adr~k~  846 (1013)
T KOG2012|consen  767 VKIVVEEAELAASSASVDDSAAIDQLNKALPSPSVLPSFKMKPLDFEKDDDSNFHMDFITAASNLRAQNYSIPPADRLKT  846 (1013)
T ss_pred             CeecccccccccccccCCchHHHHHHhhcccccccCCCCceeeeeeccccccccchHHHHHHhhhhhhccCCCccchhhh
Confidence                                                     1122333333  499999999999999999999999889


Q ss_pred             HhhhhccCccccchhHHHHHHHHHHHHHHHhcC
Q 020259          272 QGVVKNIIPAIASTNAIISAACALETLKIASGC  304 (328)
Q Consensus       272 ~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~  304 (328)
                      +.++..++|+|++|.|.+.|+++.|++|++.|+
T Consensus       847 K~IaGkIIPAIATtTa~v~Glv~LElyKv~~G~  879 (1013)
T KOG2012|consen  847 KRIAGKIIPAIATTTAAVSGLVCLELYKVVDGK  879 (1013)
T ss_pred             heeeeeEEEEEeehhHHHHHHHHhhhhhhccCC
Confidence            999999999999999999999999999999994

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=100.00  E-value=1.6e-42  Score=326.79  Aligned_cols=224  Identities=27%  Similarity=0.377  Sum_probs=196.7

Q ss_pred             CCCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCC--Ch
Q 020259           19 AGNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVG--KP   94 (328)
Q Consensus        19 ~~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG--~~   94 (328)
                      .++|+||+++  ||.++|++| ++++|+|||+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++++|+|  ++
T Consensus         2 ~~rY~Rq~~l~~~G~~~Q~~L-~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~   80 (339)
T PRK07688          2 NERYSRQELFSPIGEEGQQKL-REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLP   80 (339)
T ss_pred             cchhhhhhchhhcCHHHHHHh-cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCc
Confidence            3689999988  999999999 799999999999999999999999999999999999999999999999999995  59


Q ss_pred             HHHHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEe
Q 020259           95 KAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDG  173 (328)
Q Consensus        95 Ka~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~  173 (328)
                      |+++++++++++||.++++++...+...+ .++++++|+||+|+|+.+.+.++|++|             ++.++|+|.+
T Consensus        81 Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~-------------~~~~iP~i~~  147 (339)
T PRK07688         81 KAVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA-------------QKYGIPWIYG  147 (339)
T ss_pred             HHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH-------------HHhCCCEEEE
Confidence            99999999999999999999988886544 678899999999999999999999999             6778999999


Q ss_pred             eecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHH
Q 020259          174 GTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSE  253 (328)
Q Consensus       174 ~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  253 (328)
                      ++.|+.|++.++.|+.++||+|+++..|...  +.|                                            
T Consensus       148 ~~~g~~G~~~~~~p~~~pC~~Cl~~~~~~~~--~~c--------------------------------------------  181 (339)
T PRK07688        148 ACVGSYGLSYTIIPGKTPCLRCLLQSIPLGG--ATC--------------------------------------------  181 (339)
T ss_pred             eeeeeeeEEEEECCCCCCCeEeecCCCCCCC--CCC--------------------------------------------
Confidence            9999999999888999999999985433210  011                                            


Q ss_pred             HHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCce-EEeecCcccccccc
Q 020259          254 AVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNY-LTYAQLSFFASAMQ  325 (328)
Q Consensus       254 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~-~~fdg~~~~~~~~~  325 (328)
                                             ...+.++|+++++|+++|+|++|+|+|.++++.+. +.||..+.....++
T Consensus       182 -----------------------~~~gv~~p~~~~i~~~~a~ealk~l~g~~~~l~~~l~~~d~~~~~~~~~~  231 (339)
T PRK07688        182 -----------------------DTAGIISPAVQIVASYQVTEALKLLVGDYEALRDGLVSFDVWKNEYSCMN  231 (339)
T ss_pred             -----------------------ccCCcccHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEE
Confidence                                   00134789999999999999999999998776655 57999988766654

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=100.00  E-value=1.3e-42  Score=327.37  Aligned_cols=225  Identities=28%  Similarity=0.395  Sum_probs=196.1

Q ss_pred             CCCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCC--Ch
Q 020259           19 AGNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVG--KP   94 (328)
Q Consensus        19 ~~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG--~~   94 (328)
                      .++|+||+++  ||.++|++| ++++|+|||+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++|+++|+|  ++
T Consensus         2 ~~rY~Rq~~~~~~G~~~Q~~L-~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~   80 (338)
T PRK12475          2 QERYSRQILFSGIGEEGQRKI-REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKP   80 (338)
T ss_pred             cchhhhhhchhhcCHHHHHhh-cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCcc
Confidence            3689999998  899999999 799999999999999999999999999999999999999999999999999985  89


Q ss_pred             HHHHHHHHHHhhCCCcEEEEEecccCCc-chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEe
Q 020259           95 KAEVAAKRVMERVSGVNIVPHFCRIEDK-DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDG  173 (328)
Q Consensus        95 Ka~a~~~~l~~lnp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~  173 (328)
                      ||++++++|+++||+++++++...+... ..++++++|+||+|+|+.+++..+|++|             ++.++|+|.+
T Consensus        81 Ka~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~-------------~~~~ip~i~~  147 (338)
T PRK12475         81 KAIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLS-------------QKYNIPWIYG  147 (338)
T ss_pred             HHHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH-------------HHcCCCEEEE
Confidence            9999999999999999999998887643 3667899999999999999999999999             6789999999


Q ss_pred             eecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHH
Q 020259          174 GTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSE  253 (328)
Q Consensus       174 ~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  253 (328)
                      ++.|+.|++.++.|+.++||+|+++..|...  ..|                                            
T Consensus       148 ~~~g~~G~~~~~~P~~tpC~~Cl~~~~p~~~--~~c--------------------------------------------  181 (338)
T PRK12475        148 GCVGSYGVTYTIIPGKTPCLRCLMEHVPVGG--ATC--------------------------------------------  181 (338)
T ss_pred             EecccEEEEEEECCCCCCCHHHhcCCCCCCC--CCC--------------------------------------------
Confidence            9999999999999999999999985332100  001                                            


Q ss_pred             HHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCc-eEEeecCccccccccc
Q 020259          254 AVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN-YLTYAQLSFFASAMQF  326 (328)
Q Consensus       254 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N-~~~fdg~~~~~~~~~~  326 (328)
                                             ...+.++|+.+++|++++.|++|+|+|...++.+ ++.||..+..-..+.+
T Consensus       182 -----------------------~~~Gvl~p~v~~iaslqa~EalK~L~g~~~~l~~~Ll~~D~~~~~~~~~~~  232 (338)
T PRK12475        182 -----------------------DTAGIIQPAVQIVVAYQVTEALKILVEDFEALRETFLSFDIWNNQNMSIKV  232 (338)
T ss_pred             -----------------------ccCCcCchHHHHHHHHHHHHHHHHHhCCCCCCcCeEEEEECCCCeEEEEEe
Confidence                                   0123478999999999999999999998877765 5579999876555443

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=1.6e-41  Score=325.58  Aligned_cols=225  Identities=28%  Similarity=0.427  Sum_probs=196.7

Q ss_pred             CCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259           20 GNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE   97 (328)
Q Consensus        20 ~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~   97 (328)
                      ++|+||+++  ||.++|++| ++++|+|+|+||+|++++++|+++||++|+|+|+|.|+++|++||++++++|+|++||+
T Consensus       114 ~~y~r~i~l~~~g~~~q~~l-~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~  192 (376)
T PRK08762        114 ERYSRHLRLPEVGEEGQRRL-LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVD  192 (376)
T ss_pred             HHHHHhcchhhcCHHHHHHH-hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHH
Confidence            579999999  999999999 79999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeec
Q 020259           98 VAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE  176 (328)
Q Consensus        98 a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~  176 (328)
                      +++++++++||.++++.+...+.+.+ .++++++|+||+|+|+.+.|.++|++|             ++.++|+|.+++.
T Consensus       193 ~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~-------------~~~~ip~i~~~~~  259 (376)
T PRK08762        193 SAAQRLAALNPDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDAC-------------VKLGKPLVYGAVF  259 (376)
T ss_pred             HHHHHHHHHCCCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEEec
Confidence            99999999999999999988876543 567899999999999999999999999             6789999999999


Q ss_pred             ceeeeEEEEcCCC----CCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHH
Q 020259          177 GFKGHARVIIPGV----TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYS  252 (328)
Q Consensus       177 G~~G~v~~~~p~~----~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  252 (328)
                      |+.|++.++.|+.    ++||+|.++..+.....+.|                                           
T Consensus       260 g~~g~v~~~~p~~~~~~~~c~~c~~~~~~~~~~~~~~-------------------------------------------  296 (376)
T PRK08762        260 RFEGQVSVFDAGRQRGQAPCYRCLFPEPPPPELAPSC-------------------------------------------  296 (376)
T ss_pred             cCEEEEEEEeCCCCCCCCCCHhhcCCCCCCcccCCCC-------------------------------------------
Confidence            9999999988876    89999997532211111111                                           


Q ss_pred             HHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCC-ceEEeecCcccccccc
Q 020259          253 EAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYAQLSFFASAMQ  325 (328)
Q Consensus       253 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~-N~~~fdg~~~~~~~~~  325 (328)
                                              ...+.++|+++++|+++|+|++|+|+|.+.|+. .++.||+.+.....+.
T Consensus       297 ------------------------~~~gv~g~~~~~~~~~~a~e~~k~l~g~~~~~~~~~~~~d~~~~~~~~~~  346 (376)
T PRK08762        297 ------------------------AEAGVLGVLPGVIGLLQATEAIKLLLGIGDPLTGRLLTFDALAMRFRELR  346 (376)
T ss_pred             ------------------------ccCCcchhhHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEECCCCeEEEEe
Confidence                                    012457999999999999999999999988764 6788999987755544

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.6e-39  Score=320.18  Aligned_cols=286  Identities=22%  Similarity=0.296  Sum_probs=225.5

Q ss_pred             cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259           18 RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE   97 (328)
Q Consensus        18 ~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~   97 (328)
                      ..+-|+||+++.|.++++|| ..++|||.|++|+|.||||||+|+||+++||.|...+..+||+.||+++++|||++||+
T Consensus        16 DE~LYSRQLYVlG~eAM~~m-~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~   94 (1013)
T KOG2012|consen   16 DESLYSRQLYVLGHEAMRRM-QGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAE   94 (1013)
T ss_pred             hhhhhhhhhhhccHHHHHHH-hhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHH
Confidence            34569999999999999999 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259           98 VAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG  177 (328)
Q Consensus        98 a~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G  177 (328)
                      +..++|+++|+.|.|.+++..+   ..+++++|++||.+..+.+....+|++|             +++++.||.+.+.|
T Consensus        95 as~~~LaeLN~yV~V~v~t~~~---~~e~L~~FqvVVlt~~~le~q~~i~~fc-------------h~~~i~fi~ad~RG  158 (1013)
T KOG2012|consen   95 ASVEKLAELNNYVPVVVLTGPL---TEEFLSDFQVVVLTDASLEEQLKINDFC-------------HSHGIAFIAADTRG  158 (1013)
T ss_pred             HHHHHHHHhhcceeeEEecCcc---cHHHHhCCcEEEEecCchHHHHHHHHHH-------------HhcCeEEEEeccch
Confidence            9999999999999999998775   4899999999999988899999999999             78899999999999


Q ss_pred             eeeeEEEEcCCCCCccc-----------------------cccCC-----------CCCCC---CCCcccccC-------
Q 020259          178 FKGHARVIIPGVTPCFE-----------------------CTIWL-----------FPPQV---KFPLCTLAE-------  213 (328)
Q Consensus       178 ~~G~v~~~~p~~~~c~~-----------------------c~~~~-----------~~~~~---~~~~~~~~~-------  213 (328)
                      +.|++|.++.+...|++                       |+-+.           +.+-+   ...-|+...       
T Consensus       159 Lfg~lFCDFG~eF~v~D~tGeeP~t~mI~~Is~d~pGvvT~ld~~rH~lEdGd~V~FsEveGm~eLN~~~P~kI~v~~p~  238 (1013)
T KOG2012|consen  159 LFGQLFCDFGEEFTVLDPTGEEPLTGMIASISQDNPGVVTCLDGARHGFEDGDLVTFSEVEGMTELNDCKPRKITVLGPY  238 (1013)
T ss_pred             hhhhhhccCCCceEEeCCCCCcchhhHHhhccCCCCceEEEecCccccCccCCEEEEEeeccccccCCCCceEEEEecCc
Confidence            99999999876655543                       11100           00000   000011000       


Q ss_pred             -----------------------CCC--------------------------ChhhHHHHHHHHhhhhhhcCCCCCCCCh
Q 020259          214 -----------------------TPR--------------------------TAAHCIEYAHLIKWDEVHSGKSFDPDDP  244 (328)
Q Consensus       214 -----------------------~~~--------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~  244 (328)
                                             .|+                          -+..-+.|..+-.|...+++.|.+.+ +
T Consensus       239 sf~Igdt~~f~~y~~GGi~tQVK~Pk~isfKsL~~~L~~P~fl~~df~k~~rp~~lH~af~AL~~F~~~~Gr~P~p~~-e  317 (1013)
T KOG2012|consen  239 SFSIGDTTEFGEYKKGGIFTQVKVPKTISFKSLREALKEPEFLISDFAKFDRPPQLHLAFQALHQFQEAHGRLPRPGN-E  317 (1013)
T ss_pred             eEEeccccchhhhhcCceeEEeecCceEecccHHHhhcCCCeeeeccccccccHHHHHHHHHHHHHHHHhCCCCCCCC-h
Confidence                                   011                          11111345556677777766555443 4


Q ss_pred             hHHHHHHHHHHHHHHHhCCC-CCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCcccc
Q 020259          245 EHMQWVYSEAVKRAELFGIP-GVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFA  321 (328)
Q Consensus       245 ~~~~~l~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~~  321 (328)
                      ++.+.+...+..+.+..+.. +.++.+++.+.-.+...+.|++|++||++|||++|..|||+.|+.+||+||..++..
T Consensus       318 ~DA~~l~~l~~~i~~~~~~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~sgKF~PL~Q~lYfDale~LP  395 (1013)
T KOG2012|consen  318 EDAEELVELARDISEGLGLEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACSGKFTPLKQWLYFDALESLP  395 (1013)
T ss_pred             hhHHHHHHHHHHhhhhccccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhccCccchhHheehhhHhhCC
Confidence            44445555555555544432 344578888888888999999999999999999999999999999999999987754

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=100.00  E-value=7.8e-40  Score=296.30  Aligned_cols=226  Identities=28%  Similarity=0.394  Sum_probs=200.5

Q ss_pred             cCCCCCCCCCCc--cHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChH
Q 020259           18 RAGNLVGPTFEP--GTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK   95 (328)
Q Consensus        18 ~~~~~~rq~~l~--G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~K   95 (328)
                      .-.||+||+-++  |..+|.+| ++++||||||||+||.++..|+.+|+|+|.|+|.|.|+.+|+.||.+++++.+|+.|
T Consensus        43 ei~RYsRQlilpe~gV~GQ~~L-k~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~K  121 (427)
T KOG2017|consen   43 EILRYSRQLILPEFGVHGQLSL-KNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHK  121 (427)
T ss_pred             HHHhhhheeecccccccccccc-CCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHH
Confidence            346899999885  89999999 899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259           96 AEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG  174 (328)
Q Consensus        96 a~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~  174 (328)
                      |++++..++++||.++|+.+++.+...+ .+.+++||+|++|+||..+|..+++.|             ...++|++.+.
T Consensus       122 a~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~C-------------VlLgkpLVSgS  188 (427)
T KOG2017|consen  122 AESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVC-------------VLLGKPLVSGS  188 (427)
T ss_pred             HHHHHHHHHhcCCCceeeechhhccchhHHHHhhccceEEEcCCCccchhhhhhHH-------------HHcCCcccccc
Confidence            9999999999999999999999988755 788999999999999999999999999             45689999999


Q ss_pred             ecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHH
Q 020259          175 TEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEA  254 (328)
Q Consensus       175 ~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  254 (328)
                      .-++.|++.+.--...+||+|+++..|+.+....|.                                            
T Consensus       189 aLr~EGQLtvYny~~GPCYRClFP~Ppp~~~vt~C~--------------------------------------------  224 (427)
T KOG2017|consen  189 ALRWEGQLTVYNYNNGPCYRCLFPNPPPPEAVTNCA--------------------------------------------  224 (427)
T ss_pred             cccccceeEEeecCCCceeeecCCCCcChHHhcccc--------------------------------------------
Confidence            999999998877678999999998665433322220                                            


Q ss_pred             HHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCC-ceEEeecCccccccc
Q 020259          255 VKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-NYLTYAQLSFFASAM  324 (328)
Q Consensus       255 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~-N~~~fdg~~~~~~~~  324 (328)
                                             -...+.|++.++|.+.|.|++|+++|-++++. -.++|||.++.-..+
T Consensus       225 -----------------------dgGVlGpv~GviG~mQALE~iKli~~~~~~~s~~lllfdg~~~~~r~i  272 (427)
T KOG2017|consen  225 -----------------------DGGVLGPVTGVIGCMQALETIKLIAGIGESLSGRLLLFDGLSGHFRTI  272 (427)
T ss_pred             -----------------------cCceeecchhhhhHHHHHHHHHHHHccCccCCcceEEEecccceeEEE
Confidence                                   12358999999999999999999999886655 678999999865444

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=100.00  E-value=3.5e-37  Score=280.86  Aligned_cols=222  Identities=35%  Similarity=0.586  Sum_probs=194.9

Q ss_pred             cCCCCCCCCCCccHH--HHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChH
Q 020259           18 RAGNLVGPTFEPGTE--LRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK   95 (328)
Q Consensus        18 ~~~~~~rq~~l~G~~--~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~K   95 (328)
                      .-++|+||+++|+..  +|++| +.++|+++|+||+|++++++|+++|+|+++|+|+|.|+.+|+.||++++++|+|++|
T Consensus         7 ~~~ry~Rqi~l~~~~~~~q~~l-~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~K   85 (254)
T COG0476           7 EIERYSRQILLPGIGGEGQQKL-KDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPK   85 (254)
T ss_pred             HHHhhcceeeecccCHHHHHHH-hhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcH
Confidence            346899999998655  49999 699999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259           96 AEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG  174 (328)
Q Consensus        96 a~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~  174 (328)
                      ++++++.++++||.++++++...+...+ .++++++|+|++|+|+..+|..+|+.|             ...++|+++++
T Consensus        86 a~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~-------------~~~~~pli~~~  152 (254)
T COG0476          86 AEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQFDVVLDCTDNFETRYLINDAC-------------VKLGIPLVHGG  152 (254)
T ss_pred             HHHHHHHHHHhCCCCeEEEeecccChhhHHHHhccCCEEEECCCCHHHHHHHHHHH-------------HHhCCCeEeee
Confidence            9999999999999999999999887765 588999999999999999999999999             56789999999


Q ss_pred             ecceeeeEEEEcCC-CCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHH
Q 020259          175 TEGFKGHARVIIPG-VTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSE  253 (328)
Q Consensus       175 ~~G~~G~v~~~~p~-~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  253 (328)
                      +.|+.|+++++.|+ .++||+|+++..++....+.                                             
T Consensus       153 ~~~~~g~~~~~~~~~~~~c~~~~~~~~~~~~~~~~---------------------------------------------  187 (254)
T COG0476         153 AIGFEGQVTVIIPGDKTPCYRCLFPEKPPPGLVPT---------------------------------------------  187 (254)
T ss_pred             eccceEEEEEEecCCCCCcccccCCCCCCcccccc---------------------------------------------
Confidence            99999999999999 59999999976664221110                                             


Q ss_pred             HHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCC-CC-CCceEEeecCcc
Q 020259          254 AVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCS-KT-LSNYLTYAQLSF  319 (328)
Q Consensus       254 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~-~p-i~N~~~fdg~~~  319 (328)
                         .+..                  ...+.|++.++|.+++.|++|.+++.+ .| +...+.||..+.
T Consensus       188 ---~c~~------------------~gv~~~~~~~~~~~~~~~~~k~~~g~~~~~~~~~~~~~~~~~~  234 (254)
T COG0476         188 ---SCDE------------------AGVLGPLVGVVGSLQALEAIKLLTGIGLEPLIGRLLLYDALDM  234 (254)
T ss_pred             ---cccc------------------CCccccccchhhhHHHHHHHHHhcCCCccccccceeeeechhc
Confidence               0001                  133678889999999999999999997 55 567888888776

>PRK14852 hypothetical protein; Provisional

Probab=100.00  E-value=2.1e-37  Score=317.60  Aligned_cols=248  Identities=18%  Similarity=0.238  Sum_probs=198.6

Q ss_pred             cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259           18 RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE   97 (328)
Q Consensus        18 ~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~   97 (328)
                      +..+|+||+++||.++|+|| ++++|+||||||+|++++++|+++|||+|+|+|+|.|+.+|++||++++.+|+|++||+
T Consensus       311 ~~~ry~Rqi~lig~e~Q~kL-~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kae  389 (989)
T PRK14852        311 TDIAFSRNLGLVDYAGQRRL-LRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLD  389 (989)
T ss_pred             HHHHhhchHhhcCHHHHHHH-hcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHH
Confidence            34689999999999999999 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCcEEEEEecccCCc-chhhhccCCEEEecCCCH--HHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259           98 VAAKRVMERVSGVNIVPHFCRIEDK-DISFYNDFNIIVLGLDSI--EARSYINAVACSFLEYETDDKPREETIKPMVDGG  174 (328)
Q Consensus        98 a~~~~l~~lnp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~d~~--~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~  174 (328)
                      +++++++++||+++|+++++.+... ..++++++|+||+|+|+.  +.++++++.|             ++.++|+|.++
T Consensus       390 vaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c-------------~~~~IP~I~ag  456 (989)
T PRK14852        390 VMTERALSVNPFLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRA-------------LELGIPVITAG  456 (989)
T ss_pred             HHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHH-------------HHcCCCEEEee
Confidence            9999999999999999999988664 477899999999999974  5677888888             67899999999


Q ss_pred             ecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHH
Q 020259          175 TEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEA  254 (328)
Q Consensus       175 ~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  254 (328)
                      +.|+.|++.++.|+ ..||+|.++..+..+..             |.+     +.| .. +   + .+..-++..+    
T Consensus       457 ~~G~~g~v~v~~p~-~~~~~~~f~~~~~~p~~-------------~~~-----~~~-~l-~---~-~p~~~~~~~~----  507 (989)
T PRK14852        457 PLGYSCALLVFMPG-GMNFDSYFGIDDDTPPM-------------EGY-----LRF-GM-G---L-APRPAHLGYM----  507 (989)
T ss_pred             ccccCeeEEEEcCC-CCCHHHhCCCCCCCchH-------------hhh-----hhh-hc-c---C-Ccchhhhccc----
Confidence            99999999998886 48999998654431110             000     000 00 0   0 0001111111    


Q ss_pred             HHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCC--CCCceEEeecCcccc
Q 020259          255 VKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK--TLSNYLTYAQLSFFA  321 (328)
Q Consensus       255 ~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~--pi~N~~~fdg~~~~~  321 (328)
                             +.  ...    .+...-.|++++.|.+-||+++.|++|++.|+++  +.+-++.||...+.-
T Consensus       508 -------~~--~~~----~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~~~~~p~~~qfd~~~~~~  563 (989)
T PRK14852        508 -------DR--RFV----SLHDRRGPSLDIACHLCAGMAATEAVRILLHRRGIRPVPYFRQFDPLTGRH  563 (989)
T ss_pred             -------Cc--ccc----cccccCCCchHHHHHHhHHHHHHHHHHHHhCCCccccCcchhccchhhccc
Confidence                   00  000    2223457999999999999999999999999853  677889999877653

>PRK14851 hypothetical protein; Provisional

Probab=100.00  E-value=1.6e-36  Score=306.81  Aligned_cols=251  Identities=20%  Similarity=0.284  Sum_probs=199.4

Q ss_pred             hhhhcCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCC
Q 020259           14 KLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGK   93 (328)
Q Consensus        14 ~~~~~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~   93 (328)
                      ......++|+||+++||.++|++| ++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|++||++++.+|+|+
T Consensus        18 ~~~~~~~ry~R~~~l~g~e~Q~kL-~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~   96 (679)
T PRK14851         18 AAEYREAAFSRNIGLFTPGEQERL-AEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGR   96 (679)
T ss_pred             HHHHHHHHhhhhHHhcCHHHHHHH-hcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCC
Confidence            333455889999999999999999 6999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCC--HHHHHHHHHHHHHhhhccCCCCccccccceE
Q 020259           94 PKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDS--IEARSYINAVACSFLEYETDDKPREETIKPM  170 (328)
Q Consensus        94 ~Ka~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~--~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~  170 (328)
                      +|+++++++++++||.++|++++..+++.+ .++++++|+||+|+|+  .+.+.++++.|             ++.++|+
T Consensus        97 ~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c-------------~~~~iP~  163 (679)
T PRK14851         97 PKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMA-------------REKGIPV  163 (679)
T ss_pred             HHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHH-------------HHCCCCE
Confidence            999999999999999999999999998765 6789999999999996  56888999999             6789999


Q ss_pred             EEeeecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHH
Q 020259          171 VDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWV  250 (328)
Q Consensus       171 i~~~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l  250 (328)
                      |.+++.|+.|++.++.|+ +.||.|.++..+.-++            .+..+.+..      -..|.+.      +..++
T Consensus       164 i~~g~~G~~g~~~~~~p~-~~~~~~~~~~~~~~~~------------~~~~~~~~~------g~~p~~~------~~~~~  218 (679)
T PRK14851        164 ITAGPLGYSSAMLVFTPQ-GMGFDDYFNIGGKMPE------------EQKYLRFAM------GLAPRPT------HIKYM  218 (679)
T ss_pred             EEeecccccceEEEEcCC-CCCHhHhccCCCCCCh------------HHHHHHHHh------cCCCcch------hhccC
Confidence            999999999999998887 7899998865443100            001111100      0000000      00000


Q ss_pred             HHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCC--CCCceEEeecCccc
Q 020259          251 YSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSK--TLSNYLTYAQLSFF  320 (328)
Q Consensus       251 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~--pi~N~~~fdg~~~~  320 (328)
                                      +...+ .+...-.|.....|-..+|+.+.|++|+|.++..  +.+.+..||...+.
T Consensus       219 ----------------d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  273 (679)
T PRK14851        219 ----------------DLSKV-DLKGGKGPSLNIACQLCSGMAGTEAVRIILGKGGLRPVPCYLQFDPFLQK  273 (679)
T ss_pred             ----------------cHhhc-CCccCcCCCccHHHHhhhhhHHHHHHHHhhcCCeeeccchhhhcchhhcc
Confidence                            00011 2223346778888999999999999999999764  66688899885544

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=100.00  E-value=5.5e-35  Score=258.78  Aligned_cols=151  Identities=29%  Similarity=0.419  Sum_probs=133.5

Q ss_pred             CCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHH
Q 020259           22 LVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAK  101 (328)
Q Consensus        22 ~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~  101 (328)
                      ++++...||.++|++| ++++|+|+|+||+|++++++|+++|+++|+|+|.|.|+.+|++||+++ ++|+|++|++++++
T Consensus        11 ~~~~~~~~g~~~q~~L-~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~   88 (212)
T PRK08644         11 EAMLASRHTPKLLEKL-KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKE   88 (212)
T ss_pred             HHHHHhhcCHHHHHHH-hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHH
Confidence            3444556999999999 699999999999999999999999999999999999999999999865 78999999999999


Q ss_pred             HHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccc-cceEEEeeeccee
Q 020259          102 RVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREET-IKPMVDGGTEGFK  179 (328)
Q Consensus       102 ~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~p~i~~~~~G~~  179 (328)
                      +++++||+++++.+...+.+.+ .++++++|+||+|+|+.+.+..+++.|             ++. ++|+|.+...+..
T Consensus        89 ~l~~lnp~v~v~~~~~~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~-------------~~~~~~p~I~~~~~~~~  155 (212)
T PRK08644         89 NLLEINPFVEIEAHNEKIDEDNIEELFKDCDIVVEAFDNAETKAMLVETV-------------LEHPGKKLVAASGMAGY  155 (212)
T ss_pred             HHHHHCCCCEEEEEeeecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH-------------HHhCCCCEEEeehhhcc
Confidence            9999999999999998887654 478899999999999999999999999             455 8999998666666


Q ss_pred             eeEEEEcC
Q 020259          180 GHARVIIP  187 (328)
Q Consensus       180 G~v~~~~p  187 (328)
                      |....+.|
T Consensus       156 ~~~~~~~~  163 (212)
T PRK08644        156 GDSNSIKT  163 (212)
T ss_pred             CCceEEEe
Confidence            66554444

>PRK07877 hypothetical protein; Provisional

Probab=100.00  E-value=2.2e-34  Score=291.97  Aligned_cols=181  Identities=23%  Similarity=0.280  Sum_probs=160.6

Q ss_pred             CCCccchhhh---hhhh-------cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeC
Q 020259            4 TAPSRSRDLD---KLLL-------RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGF-KNLEVIDM   72 (328)
Q Consensus         4 ~~~~~~~~~~---~~~~-------~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~   72 (328)
                      .++++|.||.   +++.       +.++|+||+.+||.++|++| ++++|+|+|+| +|+.++.+|+++|| |+|+|+|+
T Consensus        62 ~~~~~w~~~pw~~~~v~~~~~~~~~~~r~~Rn~~~ig~~~Q~~L-~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~  139 (722)
T PRK07877         62 AEPGRWVYYPWRRTVVHLLGPREFRAVRLDRNRNKITAEEQERL-GRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADF  139 (722)
T ss_pred             ccCCcEEEecchhheeecCCHHHhhHHHhhchhhhCCHHHHHHH-hcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcC
Confidence            5789999998   2222       55889999999999999999 69999999997 99999999999996 99999999


Q ss_pred             CccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHH
Q 020259           73 DRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVAC  151 (328)
Q Consensus        73 d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~  151 (328)
                      |.|+.+||+|| +++..|+|++|+++++++|+++||+++|+++...++..+ .++++++|+||+|+|++++|..+|+.| 
T Consensus       140 D~ve~sNLnRq-~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a-  217 (722)
T PRK07877        140 DTLELSNLNRV-PAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAA-  217 (722)
T ss_pred             CEEcccccccc-cCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHH-
Confidence            99999999998 589999999999999999999999999999999998754 678899999999999999999999999 


Q ss_pred             HhhhccCCCCccccccceEEEeeecceeeeEE---EEcCCCCCccccccCCCCC
Q 020259          152 SFLEYETDDKPREETIKPMVDGGTEGFKGHAR---VIIPGVTPCFECTIWLFPP  202 (328)
Q Consensus       152 ~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~---~~~p~~~~c~~c~~~~~~~  202 (328)
                                  .++++|+|.++..+  |.+.   +++...++||+|+++..+.
T Consensus       218 ------------~~~~iP~i~~~~~~--g~~~~e~~~~~p~~pc~~cl~~~~~~  257 (722)
T PRK07877        218 ------------RARRIPVLMATSDR--GLLDVERFDLEPDRPILHGLLGDIDA  257 (722)
T ss_pred             ------------HHcCCCEEEEcCCC--CCcCcceeeeCCCCceeeccCCCCCh
Confidence                        67899999887544  6652   3444478999999976554

>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family

Probab=100.00  E-value=6.4e-33  Score=259.07  Aligned_cols=224  Identities=14%  Similarity=0.098  Sum_probs=179.1

Q ss_pred             CCCCCCCCC---cc-HHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChH
Q 020259           20 GNLVGPTFE---PG-TELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK   95 (328)
Q Consensus        20 ~~~~rq~~l---~G-~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~K   95 (328)
                      +||.||+.+   +| .++|++| ++++|+   +||+|+.++..|+. |||+|+|+|+|.|+.+|++  ++|+++|+|++|
T Consensus        53 ~ry~r~l~l~~~~~~~~~Q~kL-~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~diG~~K  125 (318)
T TIGR03603        53 ITIIDNLTLKPMLIVEDYQKHL-KKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFILKKD  125 (318)
T ss_pred             HHHHHHhcCccccCcHHHHHHH-hhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhcCcHH
Confidence            689999998   45 4589999 699999   99999999999999 9999999999999999999  899999999999


Q ss_pred             HHHHHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHH--HHHHHHHHhhhccCCCCccccccceEEEe
Q 020259           96 AEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARS--YINAVACSFLEYETDDKPREETIKPMVDG  173 (328)
Q Consensus        96 a~a~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~--~l~~~~~~l~~~~~~~~~~~~~~~p~i~~  173 (328)
                      +++++++|.++||.++++..        .++++++|+||+|+|++.+|.  ++|+.|             .+.++|+|.+
T Consensus       126 ~~~a~~~L~~lnp~v~i~~~--------~~li~~~DlVid~tDn~~~r~L~~iN~ac-------------~~~~~PlV~g  184 (318)
T TIGR03603       126 IRDLTSNLDALELTKNVDEL--------KDLLKDYNYIIICTEHSNISLLRGLNKLS-------------KETKKPNTIA  184 (318)
T ss_pred             HHHHHHHHHHhCCCCEEeeH--------HHHhCCCCEEEECCCCccHhHHHHHHHHH-------------HHHCCCEEEE
Confidence            99999999999999999763        457799999999999999885  499999             5778999999


Q ss_pred             eecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHH
Q 020259          174 GTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSE  253 (328)
Q Consensus       174 ~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  253 (328)
                      +..|+.|++..++|+.++||+|+++.......  ...   +++                      ++.   .        
T Consensus       185 av~g~~Gqv~~~~P~~t~C~~Cl~~r~~~~~~--~~~---~~~----------------------~~~---~--------  226 (318)
T TIGR03603       185 FIDGPFVFITCTLPPETGCFECLERRLLSRLD--WRL---YGV----------------------FTE---Y--------  226 (318)
T ss_pred             EEccCEEEEEEEeCCCCCcHHHccchhhcccc--ccc---ccc----------------------ccc---c--------
Confidence            99999999998789899999999752211000  000   000                      000   0        


Q ss_pred             HHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCC-C-CceEEeecCcccccccc
Q 020259          254 AVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKT-L-SNYLTYAQLSFFASAMQ  325 (328)
Q Consensus       254 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~p-i-~N~~~fdg~~~~~~~~~  325 (328)
                              .++..     .  -....+.+.|+.+++|++++.|++ +++|.+.+ + ...+.||..+..-....
T Consensus       227 --------~~~~~-----~--~~~~~gv~gp~~giigsl~a~Eai-~i~g~g~~~l~g~ll~id~~t~~~~~~~  284 (318)
T TIGR03603       227 --------LVKAE-----N--NVSTAELIFPLLNIKKNLVVSEIF-AIGSLGTSKFEGRLLSINLPTLEIQFQD  284 (318)
T ss_pred             --------cCCCC-----C--CCccCCeehhHHHHHHHHHHHHHH-HHhCCCCcccCCeEEEEECCCCeEEEEe
Confidence                    00000     0  001134588999999999999999 99998775 3 77888999887765544

Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=99.97  E-value=1.8e-31  Score=220.45  Aligned_cols=132  Identities=39%  Similarity=0.626  Sum_probs=121.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      +++|+|+|+|++|++++++|+++|+++|+|+|+|.|+++|++||++++.+|+|++|+++++++|+++||++++++++..+
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~   81 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI   81 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-cchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEE
Q 020259          120 ED-KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARV  184 (328)
Q Consensus       120 ~~-~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~  184 (328)
                      .+ ...++++++|+||+|+|+.+.+.+++++|             ++.++|+|++++.|+.|+++.
T Consensus        82 ~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~-------------~~~~~p~i~~~~~g~~G~~~~  134 (135)
T PF00899_consen   82 DEENIEELLKDYDIVIDCVDSLAARLLLNEIC-------------REYGIPFIDAGVNGFYGQVVM  134 (135)
T ss_dssp             SHHHHHHHHHTSSEEEEESSSHHHHHHHHHHH-------------HHTT-EEEEEEEETTEEEEEE
T ss_pred             ccccccccccCCCEEEEecCCHHHHHHHHHHH-------------HHcCCCEEEEEeecCEEEEEE
Confidence            54 34777899999999999999999999999             688999999999999999864

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=99.97  E-value=6.3e-32  Score=245.50  Aligned_cols=142  Identities=27%  Similarity=0.350  Sum_probs=130.5

Q ss_pred             CCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHH
Q 020259           19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV   98 (328)
Q Consensus        19 ~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a   98 (328)
                      .++|+||.+|||.++|++| ++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+|++||+++..+++|++|+++
T Consensus        10 ~~rf~R~~~L~G~e~~~kL-~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~   88 (268)
T PRK15116         10 RQRFGGTARLYGEKALQLF-ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEV   88 (268)
T ss_pred             HHHHhhHHHHhCHHHHHHh-cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHH
Confidence            3589999999999999999 699999999999999999999999999999999999999999999989999999999999


Q ss_pred             HHHHHHhhCCCcEEEEEecccCCcc-hhhh-ccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259           99 AAKRVMERVSGVNIVPHFCRIEDKD-ISFY-NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG  174 (328)
Q Consensus        99 ~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~-~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~  174 (328)
                      ++++++++||+++|+.+...+...+ .+++ .++|+||+|.|+...+..++++|             ++.++|+|.++
T Consensus        89 ~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c-------------~~~~ip~I~~g  153 (268)
T PRK15116         89 MAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYC-------------RRNKIPLVTTG  153 (268)
T ss_pred             HHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHH-------------HHcCCCEEEEC
Confidence            9999999999999999987766433 4455 47999999999999999999999             67789999764

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=99.97  E-value=2.3e-30  Score=255.55  Aligned_cols=155  Identities=25%  Similarity=0.393  Sum_probs=135.2

Q ss_pred             CCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCC---CChHHHHHHHHH
Q 020259           27 FEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV---GKPKAEVAAKRV  103 (328)
Q Consensus        27 ~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~di---G~~Ka~a~~~~l  103 (328)
                      .+++... ++| ++++|+|+|+||+||++|++|+++|||+|||+|+|.|+.+|++||++|+.+|+   |++||++++++|
T Consensus       327 llP~l~~-ekL-~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~L  404 (664)
T TIGR01381       327 LHPDLQL-ERY-SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKAL  404 (664)
T ss_pred             cCChhhH-HHH-hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHH
Confidence            3444443 899 69999999999999999999999999999999999999999999999999999   999999999999


Q ss_pred             HhhCCCcEEEEEeccc-------CC-----------cchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCcccc
Q 020259          104 MERVSGVNIVPHFCRI-------ED-----------KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREE  165 (328)
Q Consensus       104 ~~lnp~v~v~~~~~~~-------~~-----------~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~  165 (328)
                      +++||.++++.+...+       .+           .-.++++++|+|++|+|+.+.|..++.+|             ..
T Consensus       405 k~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c-------------~~  471 (664)
T TIGR01381       405 KRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLC-------------SR  471 (664)
T ss_pred             HHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHH-------------HH
Confidence            9999999999988774       22           12467899999999999999999999999             57


Q ss_pred             ccceEEEeeecceeeeEEEEc------------------CCCCCcccccc
Q 020259          166 TIKPMVDGGTEGFKGHARVII------------------PGVTPCFECTI  197 (328)
Q Consensus       166 ~~~p~i~~~~~G~~G~v~~~~------------------p~~~~c~~c~~  197 (328)
                      +++|+|.+. .|+.|++....                  +...+||+|.-
T Consensus       472 ~~kplI~aA-lGfdg~lvmrhG~~~~~~~~~~~~~~~~~~~~~gCYfC~D  520 (664)
T TIGR01381       472 HKKIAISAA-LGFDSYVVMRHGIGRSESVSDVSSSDSVPYSRLGCYFCND  520 (664)
T ss_pred             hCCCEEEEE-eccceEEEEEecccccccccccccccccCCCCCCccccCC
Confidence            789999985 79999987641                  12578999983

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=99.97  E-value=5.1e-31  Score=232.31  Aligned_cols=117  Identities=15%  Similarity=0.198  Sum_probs=107.8

Q ss_pred             CCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHH
Q 020259           19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV   98 (328)
Q Consensus        19 ~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a   98 (328)
                      .++||||+++||.++|+|| ++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+|++|||++++ ++|++||++
T Consensus         6 ~~RYsRQIrLwG~EgQ~KL-~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAea   83 (287)
T PTZ00245          6 AVRYDRQIRLWGKSTQQQL-MHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGAR   83 (287)
T ss_pred             HHHHhHHHHHhCHHHHHHH-hhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHH
Confidence            4689999999999999999 69999999999999999999999999999999999999999999999987 689999999


Q ss_pred             HHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHH
Q 020259           99 AAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEA  142 (328)
Q Consensus        99 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~  142 (328)
                      ++++|+++||.++|+.+...++.     .++|++||.+..+.+.
T Consensus        84 Aa~~L~eLNP~V~V~~i~~rld~-----~n~fqvvV~~~~~le~  122 (287)
T PTZ00245         84 ALGALQRLNPHVSVYDAVTKLDG-----SSGTRVTMAAVITEED  122 (287)
T ss_pred             HHHHHHHHCCCcEEEEcccccCC-----cCCceEEEEEcccHHH
Confidence            99999999999999998877754     3589999988776554

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=99.97  E-value=4.6e-30  Score=220.77  Aligned_cols=142  Identities=28%  Similarity=0.418  Sum_probs=126.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      +|+|+|+||+|++++++|+++|+++|+|+|+|.|+++|++||++ ..+|+|++|+++++++|+++||++++++++..+..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~   79 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-FLSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-cHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence            69999999999999999999999999999999999999999985 57899999999999999999999999999998876


Q ss_pred             cc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCC--CCccccc
Q 020259          122 KD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGV--TPCFECT  196 (328)
Q Consensus       122 ~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~--~~c~~c~  196 (328)
                      .+ .++++++|+||+|+|+.+.|..+++.|+            +.+++|+|.++..|.+|++.+..|+.  .+|++|.
T Consensus        80 ~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~------------~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (174)
T cd01487          80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLL------------GNKNKPVVCASGMAGFGDSNNIKTKKISDNFYICG  145 (174)
T ss_pred             hhHHHHhcCCCEEEECCCCHHHHHHHHHHHH------------HHCCCCEEEEehhhccCCeEEEEecCCCCCeEEee
Confidence            44 5789999999999999999998888874            34589999998888888887766554  4688876

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=99.97  E-value=8.8e-30  Score=212.35  Aligned_cols=132  Identities=42%  Similarity=0.665  Sum_probs=124.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      +|+|+|+||+|++++++|+++|+++|+|+|+|.++++|++||+|++++|+|++|+++++++++++||+++++.++..+..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~   80 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE   80 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999888765


Q ss_pred             cc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEc
Q 020259          122 KD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII  186 (328)
Q Consensus       122 ~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~  186 (328)
                      .. .++++++|+||+|.|+.+.+..++++|             ++.++|+|.+++.|+.|+++++.
T Consensus        81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~-------------~~~~i~~i~~~~~g~~g~~~~~~  133 (143)
T cd01483          81 DNLDDFLDGVDLVIDAIDNIAVRRALNRAC-------------KELGIPVIDAGGLGLGGDIQVID  133 (143)
T ss_pred             hhHHHHhcCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEcCCCcEEEEEEEE
Confidence            33 678899999999999999999999999             67899999999999999998765

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=99.97  E-value=5.3e-30  Score=229.04  Aligned_cols=136  Identities=32%  Similarity=0.387  Sum_probs=124.7

Q ss_pred             ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC
Q 020259           29 PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS  108 (328)
Q Consensus        29 ~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp  108 (328)
                      +|.++|++| ++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|++||+++.++|+|++|+++++++|+++||
T Consensus         1 ~G~e~~~~L-~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP   79 (231)
T cd00755           1 YGEEGLEKL-RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINP   79 (231)
T ss_pred             CCHHHHHHH-hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCC
Confidence            699999999 6999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEecccCCcc-hhhh-ccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecce
Q 020259          109 GVNIVPHFCRIEDKD-ISFY-NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF  178 (328)
Q Consensus       109 ~v~v~~~~~~~~~~~-~~~~-~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~  178 (328)
                      +++|+.+...+...+ .+++ .++|+||+|.|+...+..++++|             ++.++|+|.++..|-
T Consensus        80 ~~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c-------------~~~~ip~I~s~g~g~  138 (231)
T cd00755          80 ECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYC-------------RKRKIPVISSMGAGG  138 (231)
T ss_pred             CcEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHH-------------HHhCCCEEEEeCCcC
Confidence            999999998887533 4444 47999999999999999999999             677899998765554

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=99.96  E-value=5.9e-29  Score=218.24  Aligned_cols=122  Identities=29%  Similarity=0.462  Sum_probs=112.6

Q ss_pred             CccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC
Q 020259           28 EPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV  107 (328)
Q Consensus        28 l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln  107 (328)
                      -.|.++|++| ++++|+|+|+||+|+++|++|+++|+++++|+|.|.|+++|++||+ |..+++|++|+++++++|+++|
T Consensus        10 ~~~~~~q~~L-~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~~~l~~in   87 (200)
T TIGR02354        10 RHTPKIVQKL-EQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEALKENISEIN   87 (200)
T ss_pred             hcCHHHHHHH-hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhCCCHHHHHHHHHHHHHC
Confidence            4689999999 6999999999999999999999999999999999999999999996 5778999999999999999999


Q ss_pred             CCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHH
Q 020259          108 SGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVAC  151 (328)
Q Consensus       108 p~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~  151 (328)
                      |.++++++...++..+ .++++++|+||+|+|+.+++..+++.|.
T Consensus        88 p~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~  132 (200)
T TIGR02354        88 PYTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVL  132 (200)
T ss_pred             CCCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHH
Confidence            9999999998887654 5678999999999999999988777664

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=99.96  E-value=6.2e-29  Score=222.79  Aligned_cols=182  Identities=27%  Similarity=0.320  Sum_probs=149.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCC-----C-----eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGF-----K-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS  108 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gv-----g-----~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp  108 (328)
                      +..+|+|||+||+||+++++|+++|+     |     +|+|+|+|.|+++|++|| +|.++|+|++||+++++++++.| 
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~-   87 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM-   87 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc-
Confidence            68999999999999999999999973     4     999999999999999999 56789999999999999999988 


Q ss_pred             CcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecce----------
Q 020259          109 GVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF----------  178 (328)
Q Consensus       109 ~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~----------  178 (328)
                      ++++++++..+..  .+++.++|+||+|+|+.++|..+++.|...          ....+|++++|+.+.          
T Consensus        88 ~~~i~a~~~~~~~--~~~~~~~DiVi~avDn~~aR~~l~~~~~~~----------~~~~~~~ld~Gn~~~~gqv~~g~i~  155 (244)
T TIGR03736        88 GTDWTAHPERVER--SSTLHRPDIVIGCVDNRAARLAILRAFEGG----------YSGYAYWLDLGNRADDGQVILGQVP  155 (244)
T ss_pred             CceEEEEEeeeCc--hhhhcCCCEEEECCCCHHHHHHHHHHHHHh----------cccccceecccCCCCCCcEEEEecc
Confidence            8999999988876  345678999999999999999999999531          122479999988443          


Q ss_pred             ---eeeEEEEcCCCCCccccccCCCC-CCCCCCcccccCCCCChhhHH-----HHHHHHhhhhhh
Q 020259          179 ---KGHARVIIPGVTPCFECTIWLFP-PQVKFPLCTLAETPRTAAHCI-----EYAHLIKWDEVH  234 (328)
Q Consensus       179 ---~G~v~~~~p~~~~c~~c~~~~~~-~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~~  234 (328)
                         .|...+.+|..+.||.|+++..+ ++++.|+|++.+....+...+     ..+..+.|+-..
T Consensus       156 ~~~k~~~~~~lP~vte~y~~~~d~~~~~~~~~PsCsla~al~~Q~l~iN~~~a~~~~~~L~~lf~  220 (244)
T TIGR03736       156 SRAKGENRLRLPHVGELFPELIDPSVDPDDDRPSCSLAEALAKQSLFINQAIAVFAMNLLWKLFR  220 (244)
T ss_pred             cccccCCceecCCchhhCcccccCccCCCCCCCCchHHHHhcCchhHHHHHHHHHHHHHHHHHHh
Confidence               45666778999999999887544 567889999988776655443     344556666554

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=99.96  E-value=3.3e-28  Score=222.08  Aligned_cols=142  Identities=30%  Similarity=0.442  Sum_probs=124.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCC--CCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMED--VGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~d--iG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      +|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+|++||+||+.+|  +|++||++++++|+++||+++++.+...+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I   80 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI   80 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence            6999999999999999999999999999999999999999999999999  99999999999999999999999987654


Q ss_pred             C----------------C--cchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeee
Q 020259          120 E----------------D--KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGH  181 (328)
Q Consensus       120 ~----------------~--~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~  181 (328)
                      .                +  .-.++++++|+|++|+|+.+.|..++.+|             ..+++|+|. ...|+.|+
T Consensus        81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~-------------~~~~k~~I~-aalGfdg~  146 (307)
T cd01486          81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLS-------------AAKNKLVIN-AALGFDSY  146 (307)
T ss_pred             cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHH-------------HHhCCcEEE-EEeccceE
Confidence            1                0  12567899999999999999999999999             577899998 46688888


Q ss_pred             EEEEcC-------------------CCCCcccccc
Q 020259          182 ARVIIP-------------------GVTPCFECTI  197 (328)
Q Consensus       182 v~~~~p-------------------~~~~c~~c~~  197 (328)
                      +.....                   ..-+||.|.=
T Consensus       147 lvmrhg~~~~~~~~~~~~~~~~~~~~~lgCYfCnD  181 (307)
T cd01486         147 LVMRHGAGPQSQSGSGDSSSDSIPGSRLGCYFCND  181 (307)
T ss_pred             EEEEeCCCcccccccccccccccCCCCcceeeeCC
Confidence            765432                   1468999974

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=99.95  E-value=1.4e-27  Score=208.69  Aligned_cols=143  Identities=27%  Similarity=0.383  Sum_probs=131.3

Q ss_pred             cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259           18 RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE   97 (328)
Q Consensus        18 ~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~   97 (328)
                      ..++|.|.-+++|.++-+|| ++++|+|+|+||+||.++..|+++|+|+|+|+|.|.|+.+|+|||.-....++|++|++
T Consensus         9 ~~~rf~~~~~l~G~~~lekl-~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~   87 (263)
T COG1179           9 YRQRFGGIARLYGEDGLEKL-KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVE   87 (263)
T ss_pred             HHHHhhhHHHHcChhHHHHH-hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHH
Confidence            45678999999999999999 69999999999999999999999999999999999999999999987778899999999


Q ss_pred             HHHHHHHhhCCCcEEEEEecccCCcc-hhhh-ccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259           98 VAAKRVMERVSGVNIVPHFCRIEDKD-ISFY-NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG  174 (328)
Q Consensus        98 a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~-~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~  174 (328)
                      +++++++.+||+++|.+....+++.+ ++++ .+||+||+|.|+..+...|-.+|             +++++|+|..+
T Consensus        88 vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c-------------~~~ki~vIss~  153 (263)
T COG1179          88 VMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYC-------------RRNKIPVISSM  153 (263)
T ss_pred             HHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHH-------------HHcCCCEEeec
Confidence            99999999999999999999988765 4444 46999999999999999999999             67789998654

>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]

Probab=99.93  E-value=7.4e-26  Score=200.35  Aligned_cols=231  Identities=25%  Similarity=0.391  Sum_probs=178.6

Q ss_pred             cCCCCCCCCCC--cc-HHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCCh
Q 020259           18 RAGNLVGPTFE--PG-TELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKP   94 (328)
Q Consensus        18 ~~~~~~rq~~l--~G-~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~   94 (328)
                      .+.+|+|-..|  .| .+.-.|+| ...|.|||.||+||-+|..|.++|+|++.|+|.|+|+.+|++|-| |.++..|.+
T Consensus        58 DSNPYSRLMALqRMgIV~dYErIR-~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~QaGls  135 (422)
T KOG2336|consen   58 DSNPYSRLMALQRMGIVDDYERIR-EFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPDQAGLS  135 (422)
T ss_pred             cCChHHHHHHHHHhcchhhHHHHh-hheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcccccch
Confidence            45667765332  23 45567896 999999999999999999999999999999999999999999996 699999999


Q ss_pred             HHHHHHHHHHhhCCCcEEEEEecccCCcc--hhh-----------hccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCC
Q 020259           95 KAEVAAKRVMERVSGVNIVPHFCRIEDKD--ISF-----------YNDFNIIVLGLDSIEARSYINAVACSFLEYETDDK  161 (328)
Q Consensus        95 Ka~a~~~~l~~lnp~v~v~~~~~~~~~~~--~~~-----------~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~  161 (328)
                      |++++...|..+||+|.++.++-.+....  +.|           -+..|+|+.|+||.++|..+|..|.          
T Consensus       136 Kv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACN----------  205 (422)
T KOG2336|consen  136 KVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACN----------  205 (422)
T ss_pred             HHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHH----------
Confidence            99999999999999999999988875421  111           1348999999999999999999993          


Q ss_pred             ccccccceEEEeeec--ceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCC
Q 020259          162 PREETIKPMVDGGTE--GFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSF  239 (328)
Q Consensus       162 ~~~~~~~p~i~~~~~--G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  239 (328)
                         +.+--+...|+.  ...||++++.|+.|+||.|..+..-                                      
T Consensus       206 ---E~~q~WmESGVSEnAVSGHIQ~i~PGetACFACaPPlVV--------------------------------------  244 (422)
T KOG2336|consen  206 ---ELNQTWMESGVSENAVSGHIQLIVPGETACFACAPPLVV--------------------------------------  244 (422)
T ss_pred             ---HhhhHHHHccCccccccceeEEecCCccceecccCceee--------------------------------------
Confidence               333334444443  4679999999999999999742100                                      


Q ss_pred             CCCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCcc
Q 020259          240 DPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSF  319 (328)
Q Consensus       240 ~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~  319 (328)
                                          .-||+..+.. .+   .-+...+++|.+|++|+++|..+|+|-..++ +..|+-|+.++.
T Consensus       245 --------------------As~IDErTLK-Re---GVCAASLPTTMgvvAG~LVqN~LK~LLNFGe-VS~YlGYNal~D  299 (422)
T KOG2336|consen  245 --------------------ASGIDERTLK-RE---GVCAASLPTTMGVVAGFLVQNSLKFLLNFGE-VSPYLGYNALSD  299 (422)
T ss_pred             --------------------ecCcchhhhh-hc---ceeeecCcchHHHHHHHHHHHHHHHHhhccc-cchhhcchhHHh
Confidence                                0011100000 01   1245679999999999999999999998754 457888999988


Q ss_pred             ccccccc
Q 020259          320 FASAMQF  326 (328)
Q Consensus       320 ~~~~~~~  326 (328)
                      +.+.|.+
T Consensus       300 FFP~msm  306 (422)
T KOG2336|consen  300 FFPTMSM  306 (422)
T ss_pred             hCccccC
Confidence            8887764

>PRK06153 hypothetical protein; Provisional

Probab=99.93  E-value=3e-25  Score=208.58  Aligned_cols=145  Identities=25%  Similarity=0.293  Sum_probs=126.5

Q ss_pred             CccchhhhhhhhcCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCcccc-
Q 020259            6 PSRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQF-   84 (328)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~-   84 (328)
                      .|-+.|+|.+-.|.         =+.+.|++| ++++|+||||||+||.++..|+++||++|+|+|+|.|+++|++||+ 
T Consensus       152 ~svf~y~dt~s~R~---------~i~~~q~kL-~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~g  221 (393)
T PRK06153        152 DSVFNYPDTASSRA---------GIGALSAKL-EGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPG  221 (393)
T ss_pred             CCceehhhhhcccc---------ChHHHHHHH-hhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccc
Confidence            45566666665542         134679999 6999999999999999999999999999999999999999999997 


Q ss_pred             CCCCCCCCC--hHHHHHHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCc
Q 020259           85 LFRMEDVGK--PKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKP  162 (328)
Q Consensus        85 l~~~~diG~--~Ka~a~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~  162 (328)
                      +++.+|+|+  +|+++++++++++||.  |.++...++..+.+.++++|+||+|+|+.+.|.++++.|            
T Consensus       222 af~~~DvGk~~~KVevaa~rl~~in~~--I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a------------  287 (393)
T PRK06153        222 AASIEELREAPKKVDYFKSRYSNMRRG--IVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYL------------  287 (393)
T ss_pred             cCCHhHcCCcchHHHHHHHHHHHhCCe--EEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH------------
Confidence            568999999  9999999999999984  567777886666667899999999999999999999999            


Q ss_pred             cccccceEEEeee
Q 020259          163 REETIKPMVDGGT  175 (328)
Q Consensus       163 ~~~~~~p~i~~~~  175 (328)
                       .+.++|+|++|.
T Consensus       288 -~~~gIP~Id~G~  299 (393)
T PRK06153        288 -EALGIPFIDVGM  299 (393)
T ss_pred             -HHcCCCEEEeee
Confidence             577999999875

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=4.1e-23  Score=185.51  Aligned_cols=251  Identities=19%  Similarity=0.203  Sum_probs=174.3

Q ss_pred             CCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHH
Q 020259           20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVA   99 (328)
Q Consensus        20 ~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~   99 (328)
                      ++..|+...+|.++|+|| +++=|+||||||+||.++-.|+++|+++|.|+|+|.|+.+.|+||......|+|.+|+.++
T Consensus        55 eqLarN~aFfGee~m~kl-~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~cl  133 (430)
T KOG2018|consen   55 EQLARNYAFFGEEGMEKL-TNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCL  133 (430)
T ss_pred             HHHHhHHhhhhhhHHHHh-cCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHH
Confidence            445677778999999999 6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCcEEEEEecccCCcc-hh-hhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259          100 AKRVMERVSGVNIVPHFCRIEDKD-IS-FYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG  177 (328)
Q Consensus       100 ~~~l~~lnp~v~v~~~~~~~~~~~-~~-~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G  177 (328)
                      ++.++++.|.++|++...-++..+ ++ .+.+.|.|++|.||.++..-+-++|             .++++++|.+.-.+
T Consensus       134 kkh~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~-------------~~~~l~Viss~Gaa  200 (430)
T KOG2018|consen  134 KKHFSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYC-------------YNHGLKVISSTGAA  200 (430)
T ss_pred             HHHHHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHH-------------HHcCCceEeccCcc
Confidence            999999999999999888776654 33 4467999999999999999898999             57789988643222


Q ss_pred             eee-eEEEEcCCCCCccccccCCCCCCCCCCcc-cccCCCCChhhHHHHHHHHhhhhhhcC----CCCCCCChhHHHHHH
Q 020259          178 FKG-HARVIIPGVTPCFECTIWLFPPQVKFPLC-TLAETPRTAAHCIEYAHLIKWDEVHSG----KSFDPDDPEHMQWVY  251 (328)
Q Consensus       178 ~~G-~v~~~~p~~~~c~~c~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~  251 (328)
                      ... ..++-+.+           ....+.-|+. +.+  .+...+.|.-.+-+.|+.+++.    .-++..++++-    
T Consensus       201 aksDPTrv~v~D-----------is~t~~DPlsR~vR--rrLrk~GI~~GIpVVFS~Ekpdprka~lLp~~d~e~e----  263 (430)
T KOG2018|consen  201 AKSDPTRVNVAD-----------ISETEEDPLSRSVR--RRLRKRGIEGGIPVVFSLEKPDPRKAKLLPLEDEEGE----  263 (430)
T ss_pred             ccCCCceeehhh-----------ccccccCcHHHHHH--HHHHHhccccCCceEEecCCCCccccccCCCCccccc----
Confidence            111 11111111           0111111111 000  0111233443444455544421    11121222110    


Q ss_pred             HHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcC-CCCCCce
Q 020259          252 SEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGC-SKTLSNY  311 (328)
Q Consensus       252 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~-~~pi~N~  311 (328)
                                .-+......++++.-.+.|.+.|+++|+|-.+|.-++.-|++. -+|+.|.
T Consensus       264 ----------rg~~delsav~dfrvRilPvlGtmP~iFGltiat~vlt~ia~~pmepi~~~  314 (430)
T KOG2018|consen  264 ----------RGNVDELSAVPDFRVRILPVLGTMPGIFGLTIATYVLTQIAQYPMEPIENK  314 (430)
T ss_pred             ----------cCChhhhhhccchhhhhcccccCcchHHHHHHHHHHHHHHhcCCCCccccc
Confidence                      0000111234555556789999999999999999999998863 3466653

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=99.75  E-value=5.4e-18  Score=166.66  Aligned_cols=189  Identities=18%  Similarity=0.204  Sum_probs=145.2

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      ++-| +++|+|+|.|++|+.++.+|+.+|+++|..+|.|.+ .+|++|        ||+. ++.+++    .||+++++.
T Consensus       125 ~~qR-~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgEl-~e~A~~----~n~~v~v~~  189 (637)
T TIGR03693       125 ELSR-NAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHEL-AEIAEE----TDDALLVQE  189 (637)
T ss_pred             hhhh-cccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHHH-HHHHHH----hCCCCceEe
Confidence            3444 999999999999999999999999999999999999 999999        6666 554444    899999999


Q ss_pred             EecccCCcchhhhccCCEEEecCC--CHHHHHHHHHHHHHhhhccCCCCcccccc---ceEEEeeecceeeeEEEEcCCC
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLD--SIEARSYINAVACSFLEYETDDKPREETI---KPMVDGGTEGFKGHARVIIPGV  189 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d--~~~~~~~l~~~~~~l~~~~~~~~~~~~~~---~p~i~~~~~G~~G~v~~~~p~~  189 (328)
                      .+....+.-.+.++++|+||..+|  +.....++|+.|             .+.+   +|++.++..++.|.++.  |+.
T Consensus       190 i~~~~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~ac-------------vkegk~~IPai~~G~~~liGPlft--Pgk  254 (637)
T TIGR03693       190 IDFAEDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFC-------------KEEGKGFIPAICLKQVGLAGPVFQ--QHG  254 (637)
T ss_pred             ccCCcchhHHHhhcCCcEEEEECCCCChHHHHHHHHHH-------------HHcCCCeEEEEEcccceeecceEC--CCC
Confidence            877444445788899999999988  456778999999             4556   77778888888888875  999


Q ss_pred             CCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCchh
Q 020259          190 TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYS  269 (328)
Q Consensus       190 ~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~  269 (328)
                      ++|++|......                              .                           .+ ++..   
T Consensus       255 TGCWeCa~~RL~------------------------------e---------------------------~~-L~~~---  273 (637)
T TIGR03693       255 DECFEAAWHRLH------------------------------E---------------------------SA-LHEE---  273 (637)
T ss_pred             CcHHHHHHHHHH------------------------------H---------------------------Hh-cCCC---
Confidence            999999641000                              0                           00 0000   


Q ss_pred             hhHhhhhccCccccc-hhHHHHHHHHHHHHHHHhcC--CCCCCceEEeecCcccc
Q 020259          270 LTQGVVKNIIPAIAS-TNAIISAACALETLKIASGC--SKTLSNYLTYAQLSFFA  321 (328)
Q Consensus       270 ~~~~~~~~~~~~l~p-~~aivGG~~aqEviK~it~~--~~pi~N~~~fdg~~~~~  321 (328)
                             .....++| +.|+++++++.|++|.+++.  ...-..++.||-.+..+
T Consensus       274 -------~~s~a~sPat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDleTLE~  321 (637)
T TIGR03693       274 -------NSLAAFPLAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDLATLEG  321 (637)
T ss_pred             -------CcccccCHHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEcccccc
Confidence                   00012344 58999999999999999984  34556788999888765

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]

Probab=99.58  E-value=7.1e-15  Score=140.24  Aligned_cols=114  Identities=31%  Similarity=0.482  Sum_probs=98.8

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCC---CChHHHHHHHHHHhhCCCcE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV---GKPKAEVAAKRVMERVSGVN  111 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~di---G~~Ka~a~~~~l~~lnp~v~  111 (328)
                      +++ ++.++|+.|+|.+||.||++|.--||.+||++|+.+|.-+|-.||.+|+-+|-   |++||++++++|++++|.++
T Consensus       336 d~i-s~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~  414 (669)
T KOG2337|consen  336 DII-SQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSME  414 (669)
T ss_pred             hhh-hcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCcccc
Confidence            678 79999999999999999999999999999999999999999999999998886   59999999999999999998


Q ss_pred             EEEEecccCC-------c-----------chhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          112 IVPHFCRIED-------K-----------DISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       112 v~~~~~~~~~-------~-----------~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .+.+.-.+.-       .           -+.+++..|+|+..+|+.+.| |+-...
T Consensus       415 atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESR-WLPtll  470 (669)
T KOG2337|consen  415 ATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESR-WLPTLL  470 (669)
T ss_pred             ccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhh-hhHHHH
Confidence            7776655421       1           145678999999999997664 666544

>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=99.11  E-value=2.1e-10  Score=82.71  Aligned_cols=67  Identities=40%  Similarity=0.680  Sum_probs=54.5

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcC
Q 020259          238 SFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGC  304 (328)
Q Consensus       238 ~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~  304 (328)
                      +|+++++.|+++++..++++++.|||++.+...++++++...|++.|+++|++|++..|++|+++++
T Consensus         1 ~Fd~dd~~h~~fI~a~anLrA~~f~I~~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~~~   67 (67)
T PF02134_consen    1 EFDKDDPLHLDFIYAAANLRAQNFGIPPLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQNC   67 (67)
T ss_dssp             ---TTSHHHHHHHHHHHHHHHHHTT---S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHTT-
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHhcC
Confidence            3678899999999999999999999998777889999999999999999999999999999999863

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....

>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]

Probab=98.55  E-value=5.7e-07  Score=74.61  Aligned_cols=127  Identities=20%  Similarity=0.268  Sum_probs=98.2

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHH---HhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEE
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLA---LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNI  112 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~---l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v  112 (328)
                      |.+....|.++|||-+|--++-+|.   +.|..+|.++|...|++.|+----  --..+|.+|++-++ ++.+..+.-.|
T Consensus        14 kk~PrGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr--~Ga~~GEyKv~Fi~-rl~~~~f~r~V   90 (217)
T COG4015          14 KKKPRGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRR--LGAKVGEYKVDFIK-RLGRVHFGRRV   90 (217)
T ss_pred             ccCCCceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHH--hCCCcchhHHHHHH-HhCcCCCCcee
Confidence            3334678999999999999999998   678899999999999999986332  23568999998654 56666778899


Q ss_pred             EEEecccCCcchhhhccCCEEEec---CCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeee
Q 020259          113 VPHFCRIEDKDISFYNDFNIIVLG---LDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGH  181 (328)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~dvVi~~---~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~  181 (328)
                      ++.++.++..+...+.+ |+|+.|   .|....-..+..+|             ++.++..|  ++.|.+|+
T Consensus        91 ~a~pE~it~dNlhll~g-DVvvi~IAGGdT~PvTaaii~ya-------------~~rG~~Ti--sT~GVFGi  146 (217)
T COG4015          91 EAFPENITKDNLHLLKG-DVVVICIAGGDTIPVTAAIINYA-------------KERGIKTI--STNGVFGI  146 (217)
T ss_pred             ecccccccccchhhhcC-CEEEEEecCCCcchhHHHHHHHH-------------HHcCceEe--ecCceeec
Confidence            99999999888888877 887555   55666667777788             56676554  45565554

>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein

Probab=98.26  E-value=1e-06  Score=66.41  Aligned_cols=47  Identities=19%  Similarity=0.236  Sum_probs=36.4

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhcCCCC-CCceEEeecCccccccccc
Q 020259          280 PAIASTNAIISAACALETLKIASGCSKT-LSNYLTYAQLSFFASAMQF  326 (328)
Q Consensus       280 ~~l~p~~aivGG~~aqEviK~it~~~~p-i~N~~~fdg~~~~~~~~~~  326 (328)
                      +.++|+.+++|+++|+|+||+|+|.+.+ ...+++||+.+.....+++
T Consensus        24 GVlg~~~giigslqA~eaik~l~g~~~~l~~~l~~~D~~~~~~~~i~~   71 (84)
T PF05237_consen   24 GVLGPVVGIIGSLQANEAIKLLLGIGEPLSGKLLTIDLLNMSFRSIRI   71 (84)
T ss_dssp             -B-HHHHHHHHHHHHHHHHHHHCT-S---BTEEEEEETTTTEEEEEE-
T ss_pred             ccccchHHHHHHHHHHHHHHHHHhcCCchhhheeeEECCCCeEEEEec
Confidence            4589999999999999999999997665 5678899999987766654

The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.03  E-value=2.9e-05  Score=63.88  Aligned_cols=78  Identities=31%  Similarity=0.385  Sum_probs=57.7

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      .+ ++++|+|+|+||.|..+++.|...|+++|++++.          .         ..|++.+++.+    +...+...
T Consensus         9 ~l-~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR----------t---------~~ra~~l~~~~----~~~~~~~~   64 (135)
T PF01488_consen    9 DL-KGKRVLVIGAGGAARAVAAALAALGAKEITIVNR----------T---------PERAEALAEEF----GGVNIEAI   64 (135)
T ss_dssp             TG-TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES----------S---------HHHHHHHHHHH----TGCSEEEE
T ss_pred             Cc-CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC----------C---------HHHHHHHHHHc----Ccccccee
Confidence            47 6999999999999999999999999999999862          2         25787777777    33333333


Q ss_pred             ecccCCcchhhhccCCEEEecCCCH
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLDSI  140 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d~~  140 (328)
                      +-  .+ ..+.+.++|+||.|+...
T Consensus        65 ~~--~~-~~~~~~~~DivI~aT~~~   86 (135)
T PF01488_consen   65 PL--ED-LEEALQEADIVINATPSG   86 (135)
T ss_dssp             EG--GG-HCHHHHTESEEEE-SSTT
T ss_pred             eH--HH-HHHHHhhCCeEEEecCCC
Confidence            22  11 235678999999998754

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=98.02  E-value=3.1e-05  Score=71.81  Aligned_cols=76  Identities=20%  Similarity=0.290  Sum_probs=60.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..++|+|+|+||.|..++..|+..|+++|+|+|.+                   ..|++.+++.+.+.++.+.+....  
T Consensus       126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~--  184 (284)
T PRK12549        126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS--  184 (284)
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc--
Confidence            46789999999999999999999999999999854                   268999999998877765543321  


Q ss_pred             cCCcchhhhccCCEEEecCC
Q 020259          119 IEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d  138 (328)
                         ...+.+.++|+||+|+.
T Consensus       185 ---~~~~~~~~aDiVInaTp  201 (284)
T PRK12549        185 ---DLAAALAAADGLVHATP  201 (284)
T ss_pred             ---chHhhhCCCCEEEECCc
Confidence               11334578999999965

>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain

Probab=97.92  E-value=4.8e-05  Score=66.47  Aligned_cols=96  Identities=20%  Similarity=0.242  Sum_probs=70.1

Q ss_pred             cHHHHHHHHcCCcEEEEcCChHHHH-HHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC
Q 020259           30 GTELRDDLQEYARILVVGAGGLGCE-LLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS  108 (328)
Q Consensus        30 G~~~q~~Lr~~~~VliiG~gglG~e-vaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp  108 (328)
                      ....|++| ++++|.|+|.|+.|++ ++..|..+|++.+.                  +                   . 
T Consensus        96 ~~~a~~~l-~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~------------------~-------------------~-  136 (193)
T TIGR03882        96 PAAALERL-RQLTVTVLSFGEGGAAALAAALAAAGIRIAP------------------S-------------------E-  136 (193)
T ss_pred             HHHHHHHH-hcCcEEEEecCCCcHHHHHHHHHHcCCCccC------------------C-------------------C-
Confidence            57889999 5999999999999998 99999999998665                  0                   0 


Q ss_pred             CcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEE-EEcC
Q 020259          109 GVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHAR-VIIP  187 (328)
Q Consensus       109 ~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~-~~~p  187 (328)
                                         ...++|++..-.......+|+.+             ...+.|++.+...|..+.+- ++.|
T Consensus       137 -------------------a~l~vVl~~Dyl~p~L~~~n~~~-------------l~~~~~~l~v~~~~~~~~~gp~~~p  184 (193)
T TIGR03882       137 -------------------ADLTVVLTDDYLDPELAAINQRA-------------LAAGRPWLLVKPGGVQPWIGPLFKP  184 (193)
T ss_pred             -------------------CCEEEEEeCCCCChHHHHHHHHH-------------HHcCCceEEEEeCCceEEECCeecC
Confidence                               11233433322233445677777             56788888887777666654 4679


Q ss_pred             CCCCccccc
Q 020259          188 GVTPCFECT  196 (328)
Q Consensus       188 ~~~~c~~c~  196 (328)
                      +.|+|++|+
T Consensus       185 ~~~~c~~c~  193 (193)
T TIGR03882       185 GKTGCWHCL  193 (193)
T ss_pred             CCCcccccC
Confidence            999999995

This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.92  E-value=6.9e-05  Score=71.89  Aligned_cols=85  Identities=22%  Similarity=0.399  Sum_probs=59.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE  120 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~  120 (328)
                      .+|+|+|+|++|+-+|.+|+..|.++|++.|...                       ..++++...... ++++..-++.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-----------------------~~~~~i~~~~~~-~v~~~~vD~~   57 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-----------------------EKCARIAELIGG-KVEALQVDAA   57 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-----------------------HHHHHHHhhccc-cceeEEeccc
Confidence            5799999999999999999999999999998221                       123333332211 5555555554


Q ss_pred             Cc--chhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          121 DK--DISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       121 ~~--~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      +.  -.+.++++|+||+|........ +-+.|
T Consensus        58 d~~al~~li~~~d~VIn~~p~~~~~~-i~ka~   88 (389)
T COG1748          58 DVDALVALIKDFDLVINAAPPFVDLT-ILKAC   88 (389)
T ss_pred             ChHHHHHHHhcCCEEEEeCCchhhHH-HHHHH
Confidence            43  2578899999999988766654 33455

>PF10585 UBA_e1_thiolCys: Ubiquitin-activating enzyme active site ; InterPro: IPR019572 Ubiquitin-activating enzyme (E1 enzyme) activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.81  E-value=9.1e-06  Score=53.56  Aligned_cols=42  Identities=40%  Similarity=0.851  Sum_probs=32.0

Q ss_pred             CCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhh
Q 020259          189 VTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEV  233 (328)
Q Consensus       189 ~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  233 (328)
                      .|.||.|..+..  .+.+|+|+++++|+.++|||+|+. ..|+..
T Consensus         2 ~Tecy~c~~~~~--~~~~P~CTir~~P~~~~HcI~wAk-~~f~~~   43 (45)
T PF10585_consen    2 VTECYECSPDPP--EKSYPVCTIRNFPRTPEHCIEWAK-DLFEEL   43 (45)
T ss_dssp             TS--TTCSGGGS--SSSEEHHHHHTS-SSHHHHHHHHH-HHHHHH
T ss_pred             ccccccCCCCCC--CCCCCcchhhcCCCCchHHHHHHH-HHHHHH
Confidence            588999987643  345999999999999999999998 666654

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin-conjugating enzymes (E2) []. This domain carries the last of five conserved cysteines that is part of the active site of the enzyme, responsible for ubiquitin thiolester complex formation, the active site being represented by the sequence motif PICTLKNFP []. Not all proteins in this entry contain a functional active site.; PDB: 3CMM_A 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B 2PX9_A 1Z7L_A 3GZN_D 3DBL_F 1R4N_H ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.69  E-value=0.00045  Score=60.82  Aligned_cols=84  Identities=15%  Similarity=0.153  Sum_probs=58.9

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      | ++.+|+|||.|.+|...++.|...| .++++++++.      .                   +.+.++.+.-.+....
T Consensus         8 l-~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~-------------------~~l~~l~~~~~i~~~~   60 (202)
T PRK06718          8 L-SNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------T-------------------ENLVKLVEEGKIRWKQ   60 (202)
T ss_pred             c-CCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------C-------------------HHHHHHHhCCCEEEEe
Confidence            6 6899999999999999999999999 5899996431      0                   1111111111233332


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      ..+   ....+.++|+||.|+++.+.-..+...|
T Consensus        61 ~~~---~~~~l~~adlViaaT~d~elN~~i~~~a   91 (202)
T PRK06718         61 KEF---EPSDIVDAFLVIAATNDPRVNEQVKEDL   91 (202)
T ss_pred             cCC---ChhhcCCceEEEEcCCCHHHHHHHHHHH
Confidence            222   3455788999999999988888887777

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.57  E-value=0.00088  Score=59.12  Aligned_cols=94  Identities=19%  Similarity=0.140  Sum_probs=66.7

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      | ++.+|+|||.|.+|..-++.|...|. ++|+++++.-                     ..+ +.+.+..   +++...
T Consensus         7 l-~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~---------------------~~l-~~l~~~~---~i~~~~   59 (205)
T TIGR01470         7 L-EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE---------------------SEL-TLLAEQG---GITWLA   59 (205)
T ss_pred             c-CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC---------------------HHH-HHHHHcC---CEEEEe
Confidence            5 58899999999999999999999997 8999986421                     011 1122211   344444


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEe
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDG  173 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~  173 (328)
                      ....   .+.+.++++||.|+++.+....+-..|             ++.++++-.+
T Consensus        60 ~~~~---~~dl~~~~lVi~at~d~~ln~~i~~~a-------------~~~~ilvn~~  100 (205)
T TIGR01470        60 RCFD---ADILEGAFLVIAATDDEELNRRVAHAA-------------RARGVPVNVV  100 (205)
T ss_pred             CCCC---HHHhCCcEEEEECCCCHHHHHHHHHHH-------------HHcCCEEEEC
Confidence            4432   455789999999999987777788888             5667776443

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.44  E-value=0.00036  Score=54.58  Aligned_cols=86  Identities=20%  Similarity=0.121  Sum_probs=60.5

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      | ++.+|+|||.|.+|..-++.|..+|. +++++.++. +.                         .+   ..++  ...
T Consensus         5 l-~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~-~~-------------------------~~---~~i~--~~~   51 (103)
T PF13241_consen    5 L-KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI-EF-------------------------SE---GLIQ--LIR   51 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE-HH-------------------------HH---TSCE--EEE
T ss_pred             c-CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch-hh-------------------------hh---hHHH--HHh
Confidence            6 68999999999999999999999995 999998765 00                         00   1222  222


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEE
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVD  172 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~  172 (328)
                      ..+    .+.++++++|+.|+++.+....+.+.|             ++.++|+-.
T Consensus        52 ~~~----~~~l~~~~lV~~at~d~~~n~~i~~~a-------------~~~~i~vn~   90 (103)
T PF13241_consen   52 REF----EEDLDGADLVFAATDDPELNEAIYADA-------------RARGILVNV   90 (103)
T ss_dssp             SS-----GGGCTTESEEEE-SS-HHHHHHHHHHH-------------HHTTSEEEE
T ss_pred             hhH----HHHHhhheEEEecCCCHHHHHHHHHHH-------------hhCCEEEEE
Confidence            222    244788999999999988888888888             566776644

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.35  E-value=0.0015  Score=55.15  Aligned_cols=81  Identities=14%  Similarity=0.138  Sum_probs=57.8

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      | ++.+|+|||.|.+|...++.|...|. ++++++++..+                         .+.++ +.  +....
T Consensus        11 l-~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~-------------------------~l~~l-~~--i~~~~   60 (157)
T PRK06719         11 L-HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK-------------------------EMKEL-PY--ITWKQ   60 (157)
T ss_pred             c-CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH-------------------------HHHhc-cC--cEEEe
Confidence            5 68999999999999999999999997 89999654211                         11111 12  22222


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      ..+   ..+.+.++|+||.++++.+.-..+...|
T Consensus        61 ~~~---~~~dl~~a~lViaaT~d~e~N~~i~~~a   91 (157)
T PRK06719         61 KTF---SNDDIKDAHLIYAATNQHAVNMMVKQAA   91 (157)
T ss_pred             ccc---ChhcCCCceEEEECCCCHHHHHHHHHHH
Confidence            222   3445688999999999988777777777

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.32  E-value=0.0013  Score=61.07  Aligned_cols=82  Identities=20%  Similarity=0.243  Sum_probs=56.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ++.+++|+|+||+|..++..|+..|+.+|+|++.+.                -...|++.+++.+.+..+.+.+...  +
T Consensus       125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~----------------~~~~~a~~l~~~l~~~~~~~~~~~~--d  186 (289)
T PRK12548        125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD----------------DFYERAEQTAEKIKQEVPECIVNVY--D  186 (289)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------hHHHHHHHHHHHHhhcCCCceeEEe--c
Confidence            467899999999999999999999999999987321                0114677777777665555444322  2


Q ss_pred             cCCc--chhhhccCCEEEecCC
Q 020259          119 IEDK--DISFYNDFNIIVLGLD  138 (328)
Q Consensus       119 ~~~~--~~~~~~~~dvVi~~~d  138 (328)
                      +.+.  -.+.+..+|+||+|+.
T Consensus       187 ~~~~~~~~~~~~~~DilINaTp  208 (289)
T PRK12548        187 LNDTEKLKAEIASSDILVNATL  208 (289)
T ss_pred             hhhhhHHHhhhccCCEEEEeCC
Confidence            2211  1334567899998865

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.30  E-value=0.0012  Score=61.16  Aligned_cols=78  Identities=22%  Similarity=0.291  Sum_probs=55.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +.++|+|+|+||.|..++-.|+..|+.+|+|+|.+.                   .|++.+++.+.+..+...+...  .
T Consensus       126 ~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~--~  184 (283)
T PRK14027        126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGV--D  184 (283)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEec--C
Confidence            467899999999999999999999999999997432                   4888888887654443222221  1


Q ss_pred             cCCcchhhhccCCEEEecCC
Q 020259          119 IEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d  138 (328)
                      ... ..+....+|+||+|+.
T Consensus       185 ~~~-~~~~~~~~divINaTp  203 (283)
T PRK14027        185 ARG-IEDVIAAADGVVNATP  203 (283)
T ss_pred             HhH-HHHHHhhcCEEEEcCC
Confidence            110 1223467899999975

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.18  E-value=0.0014  Score=60.66  Aligned_cols=77  Identities=19%  Similarity=0.153  Sum_probs=53.9

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +..+|+|+|+||.|..++..|...|+++|+|++.+                   ..|++.+++.+.... .  +.... .
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~-~--~~~~~-~  180 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG-V--ITRLE-G  180 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC-c--ceecc-c
Confidence            46789999999999999999999999999998632                   247888887765431 1  11110 0


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      . +.....+.++|+||+|+..
T Consensus       181 ~-~~~~~~~~~~DiVInaTp~  200 (282)
T TIGR01809       181 D-SGGLAIEKAAEVLVSTVPA  200 (282)
T ss_pred             h-hhhhhcccCCCEEEECCCC
Confidence            0 1112344679999999763

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=97.15  E-value=0.0052  Score=54.82  Aligned_cols=83  Identities=14%  Similarity=0.164  Sum_probs=60.0

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ++.+|+|||.|.+|..=++.|..+|. +||++-++.-                  +..   .+ +.. ++.  ++.....
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~------------------~el---~~-l~~-~~~--i~~~~r~   77 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFS------------------KEF---LD-LKK-YGN--LKLIKGN   77 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCC------------------HHH---HH-HHh-CCC--EEEEeCC
Confidence            57899999999999999999999996 8999865421                  000   11 111 233  4444443


Q ss_pred             cCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .   ..+.+.++++||.|+++.+.-..+...|
T Consensus        78 ~---~~~dl~g~~LViaATdD~~vN~~I~~~a  106 (223)
T PRK05562         78 Y---DKEFIKDKHLIVIATDDEKLNNKIRKHC  106 (223)
T ss_pred             C---ChHHhCCCcEEEECCCCHHHHHHHHHHH
Confidence            3   3456789999999999999888888888

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.09  E-value=0.0011  Score=64.13  Aligned_cols=75  Identities=25%  Similarity=0.415  Sum_probs=58.2

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      | ++++|+|||+|-+|.-+|++|...|+..|+|+          ||++         -||+.+++.+.     ..+... 
T Consensus       176 L-~~~~vlvIGAGem~~lva~~L~~~g~~~i~Ia----------NRT~---------erA~~La~~~~-----~~~~~l-  229 (414)
T COG0373         176 L-KDKKVLVIGAGEMGELVAKHLAEKGVKKITIA----------NRTL---------ERAEELAKKLG-----AEAVAL-  229 (414)
T ss_pred             c-ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEE----------cCCH---------HHHHHHHHHhC-----CeeecH-
Confidence            6 68899999999999999999999999999996          3442         57888887776     222111 


Q ss_pred             cccCCcchhhhccCCEEEecCCCHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIE  141 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~  141 (328)
                          +.-.+++..+|+||.|+..+.
T Consensus       230 ----~el~~~l~~~DvVissTsa~~  250 (414)
T COG0373         230 ----EELLEALAEADVVISSTSAPH  250 (414)
T ss_pred             ----HHHHHhhhhCCEEEEecCCCc
Confidence                123567889999999988654

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.09  E-value=0.0026  Score=58.79  Aligned_cols=75  Identities=23%  Similarity=0.298  Sum_probs=55.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      ..+|+|+|+||.+..++..|...|+.+|+|++.+                   ..|++.+++.+.+..+.+.....    
T Consensus       126 ~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~~~----  182 (283)
T COG0169         126 GKRVLILGAGGAARAVAFALAEAGAKRITVVNRT-------------------RERAEELADLFGELGAAVEAAAL----  182 (283)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhcccccccccc----
Confidence            5789999999999999999999999999998522                   26888899988887652222111    


Q ss_pred             CCcchhhhccCCEEEecCCC
Q 020259          120 EDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d~  139 (328)
                      .  +.+....+|+||+|+.-
T Consensus       183 ~--~~~~~~~~dliINaTp~  200 (283)
T COG0169         183 A--DLEGLEEADLLINATPV  200 (283)
T ss_pred             c--ccccccccCEEEECCCC
Confidence            1  11111279999999763

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.06  E-value=0.0025  Score=61.61  Aligned_cols=84  Identities=21%  Similarity=0.307  Sum_probs=53.6

Q ss_pred             EEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           43 ILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        43 VliiG~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      |+|+|+|.+|..+++.|+..+-. ++++.|.+.                   .|++.+++.+    ...++....-++.+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~   57 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND   57 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence            78999999999999999999854 899988433                   3444444443    23355555555554


Q ss_pred             cc--hhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          122 KD--ISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       122 ~~--~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      ..  .++++++|+||+|+... ....+-+.|
T Consensus        58 ~~~l~~~~~~~dvVin~~gp~-~~~~v~~~~   87 (386)
T PF03435_consen   58 PESLAELLRGCDVVINCAGPF-FGEPVARAC   87 (386)
T ss_dssp             HHHHHHHHTTSSEEEE-SSGG-GHHHHHHHH
T ss_pred             HHHHHHHHhcCCEEEECCccc-hhHHHHHHH
Confidence            32  66789999999998765 333455566

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.02  E-value=0.0028  Score=58.50  Aligned_cols=75  Identities=23%  Similarity=0.294  Sum_probs=54.1

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      + .+++|+|+|+||+|..+++.|...|+.++++++.+                   ..|++.+++.+....+ +.+   .
T Consensus       121 ~-~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~  176 (278)
T PRK00258        121 L-KGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---D  176 (278)
T ss_pred             C-CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---c
Confidence            5 47889999999999999999999999999998742                   2467777776654321 222   0


Q ss_pred             cccCCcchhhhccCCEEEecCCC
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                        .  ...+.+.++|+||+|+..
T Consensus       177 --~--~~~~~~~~~DivInaTp~  195 (278)
T PRK00258        177 --L--ELQEELADFDLIINATSA  195 (278)
T ss_pred             --c--cchhccccCCEEEECCcC
Confidence              1  113456789999999763

>PRK04148 hypothetical protein; Provisional

Probab=96.99  E-value=0.0094  Score=48.82  Aligned_cols=92  Identities=17%  Similarity=0.310  Sum_probs=69.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      +.+|+.||+| .|.++|+.|+..|. .++.+|-+.                   ..+    +.+++.    .+.+...++
T Consensus        17 ~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~-------------------~aV----~~a~~~----~~~~v~dDl   67 (134)
T PRK04148         17 NKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE-------------------KAV----EKAKKL----GLNAFVDDL   67 (134)
T ss_pred             CCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH-------------------HHH----HHHHHh----CCeEEECcC
Confidence            4679999999 99999999999997 899998332                   122    222322    245566777


Q ss_pred             CCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEe
Q 020259          120 EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDG  173 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~  173 (328)
                      .+.+.++.+++|+|-..-...+....+-+++             ++.+.+++..
T Consensus        68 f~p~~~~y~~a~liysirpp~el~~~~~~la-------------~~~~~~~~i~  108 (134)
T PRK04148         68 FNPNLEIYKNAKLIYSIRPPRDLQPFILELA-------------KKINVPLIIK  108 (134)
T ss_pred             CCCCHHHHhcCCEEEEeCCCHHHHHHHHHHH-------------HHcCCCEEEE
Confidence            7778899999999999988888888888888             5667776653

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.96  E-value=0.0035  Score=58.24  Aligned_cols=81  Identities=20%  Similarity=0.224  Sum_probs=54.8

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ++++++|+|+||.+..++-.|+..|+++|+|++.+.                -...|++.+++.+....+ ..+....  
T Consensus       123 ~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~----------------~~~~ka~~la~~~~~~~~-~~~~~~~--  183 (288)
T PRK12749        123 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD----------------EFFDKALAFAQRVNENTD-CVVTVTD--  183 (288)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc----------------cHHHHHHHHHHHhhhccC-ceEEEec--
Confidence            467899999999999999999999999999987321                023588888887765332 2222221  


Q ss_pred             cCCc--chhhhccCCEEEecCC
Q 020259          119 IEDK--DISFYNDFNIIVLGLD  138 (328)
Q Consensus       119 ~~~~--~~~~~~~~dvVi~~~d  138 (328)
                      +.+.  -.+.+.++|+||+|+.
T Consensus       184 ~~~~~~l~~~~~~aDivINaTp  205 (288)
T PRK12749        184 LADQQAFAEALASADILTNGTK  205 (288)
T ss_pred             hhhhhhhhhhcccCCEEEECCC
Confidence            1110  1123467899999865

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.94  E-value=0.0019  Score=63.09  Aligned_cols=76  Identities=16%  Similarity=0.250  Sum_probs=55.1

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      + .+.+|+|+|+|+.|..++++|...|+.+|+++...                   ..|++.+++.+..    ..+..  
T Consensus       179 l-~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt-------------------~~ra~~La~~~~~----~~~~~--  232 (414)
T PRK13940        179 I-SSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT-------------------IEKAQKITSAFRN----ASAHY--  232 (414)
T ss_pred             c-cCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHhcC----CeEec--
Confidence            5 57899999999999999999999999999997422                   1366666655421    22111  


Q ss_pred             cccCCcchhhhccCCEEEecCCCHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIE  141 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~  141 (328)
                        + +...+.+.++|+||+|+..+.
T Consensus       233 --~-~~l~~~l~~aDiVI~aT~a~~  254 (414)
T PRK13940        233 --L-SELPQLIKKADIIIAAVNVLE  254 (414)
T ss_pred             --H-HHHHHHhccCCEEEECcCCCC
Confidence              1 122567889999999988754

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.80  E-value=0.0058  Score=50.60  Aligned_cols=74  Identities=24%  Similarity=0.357  Sum_probs=53.9

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCc--EEEEEec
Q 020259           42 RILVVGA-GGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV--NIVPHFC  117 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v--~v~~~~~  117 (328)
                      ||.|||+ |.+|+.++-.|+..|+. +|.|+|.+.                   .|++..+.-|+...+..  ++.... 
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~-------------------~~~~g~a~Dl~~~~~~~~~~~~i~~-   61 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE-------------------DKAEGEALDLSHASAPLPSPVRITS-   61 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH-------------------HHHHHHHHHHHHHHHGSTEEEEEEE-
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc-------------------ccceeeehhhhhhhhhccccccccc-
Confidence            7999999 99999999999999995 599998332                   36666676666653333  222222 


Q ss_pred             ccCCcchhhhccCCEEEecCCC
Q 020259          118 RIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                          ...+-++++|+||.+...
T Consensus        62 ----~~~~~~~~aDivvitag~   79 (141)
T PF00056_consen   62 ----GDYEALKDADIVVITAGV   79 (141)
T ss_dssp             ----SSGGGGTTESEEEETTST
T ss_pred             ----ccccccccccEEEEeccc
Confidence                346667899999887553

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.77  E-value=0.0099  Score=53.23  Aligned_cols=96  Identities=22%  Similarity=0.309  Sum_probs=59.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      +++|+|+|-+|..+|++|+..|- .++++|.|.                      +.+.+.+++.   ....++..+-.+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~----------------------~~~~~~~~~~---~~~~~v~gd~t~   55 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDE----------------------ERVEEFLADE---LDTHVVIGDATD   55 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCH----------------------HHHHHHhhhh---cceEEEEecCCC
Confidence            68999999999999999999997 678877554                      1112222211   122222222222


Q ss_pred             c---chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259          122 K---DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT  175 (328)
Q Consensus       122 ~---~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~  175 (328)
                      .   ...-+.++|+++.++++......+-.++.            ...++|-+.+..
T Consensus        56 ~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~------------~~~gv~~viar~  100 (225)
T COG0569          56 EDVLEEAGIDDADAVVAATGNDEVNSVLALLAL------------KEFGVPRVIARA  100 (225)
T ss_pred             HHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHH------------HhcCCCcEEEEe
Confidence            1   12335789999999888776666655553            235677666544

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=96.68  E-value=0.0097  Score=50.34  Aligned_cols=32  Identities=28%  Similarity=0.616  Sum_probs=26.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|.+||+|..|+.+++||..+|. +++++|.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~   33 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRS   33 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESS
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccc
Confidence            479999999999999999999998 78898843

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.62  E-value=0.012  Score=48.85  Aligned_cols=74  Identities=20%  Similarity=0.231  Sum_probs=49.2

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +..+|+|+|+|++|..+++.|...|...++++|.+.                   .+++.+++.+....  +....    
T Consensus        18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~-------------------~~~~~~~~~~~~~~--~~~~~----   72 (155)
T cd01065          18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL-------------------EKAKALAERFGELG--IAIAY----   72 (155)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhcc--cceee----
Confidence            478999999999999999999999866899987432                   23444444443211  11111    


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                       . ...+.++++|+||.|+..
T Consensus        73 -~-~~~~~~~~~Dvvi~~~~~   91 (155)
T cd01065          73 -L-DLEELLAEADLIINTTPV   91 (155)
T ss_pred             -c-chhhccccCCEEEeCcCC
Confidence             1 123336889999999765

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.61  E-value=0.0087  Score=56.08  Aligned_cols=73  Identities=27%  Similarity=0.441  Sum_probs=51.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC----CcEEEEE
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS----GVNIVPH  115 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp----~v~v~~~  115 (328)
                      .+|.|||+|++|+.++..|+..|+. +|.++|.+                   ..|++..+..|....+    .+.+.. 
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~-------------------~~~~~~~a~dL~~~~~~~~~~~~i~~-   60 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN-------------------EEKAEGEALDLEDALAFLPSPVKIKA-   60 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------cchhhHhHhhHHHHhhccCCCeEEEc-
Confidence            3799999999999999999999985 89999843                   2355666666655432    222221 


Q ss_pred             ecccCCcchhhhccCCEEEecCCC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                            .+.+-++++|+||.|+..
T Consensus        61 ------~~~~~l~~aDIVIitag~   78 (306)
T cd05291          61 ------GDYSDCKDADIVVITAGA   78 (306)
T ss_pred             ------CCHHHhCCCCEEEEccCC
Confidence                  123446899999998764

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.54  E-value=0.013  Score=50.93  Aligned_cols=82  Identities=17%  Similarity=0.159  Sum_probs=55.2

Q ss_pred             HHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      + ++.+++|+|. |++|..+++.|+..|. ++++++.+                   ..|++.+++.+.+.. ...+...
T Consensus        26 l-~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~   83 (194)
T cd01078          26 L-KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV   83 (194)
T ss_pred             C-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence            5 5789999996 9999999999999884 89988633                   246666777665432 3333332


Q ss_pred             ecccCCcchhhhccCCEEEecCCCH
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLDSI  140 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d~~  140 (328)
                      ...-.+...+.++++|+||.++...
T Consensus        84 ~~~~~~~~~~~~~~~diVi~at~~g  108 (194)
T cd01078          84 ETSDDAARAAAIKGADVVFAAGAAG  108 (194)
T ss_pred             eCCCHHHHHHHHhcCCEEEECCCCC
Confidence            1110111246678999999997653

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.47  E-value=0.0065  Score=51.90  Aligned_cols=34  Identities=24%  Similarity=0.261  Sum_probs=30.2

Q ss_pred             HHcCCcEEEEcCChH-HHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVGAGGL-GCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG~ggl-G~evaknL~l~Gvg~itlvD~   72 (328)
                      | .+++|+|||.|.+ |..++++|...|+ ++++++.
T Consensus        42 l-~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r   76 (168)
T cd01080          42 L-AGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS   76 (168)
T ss_pred             C-CCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence            6 6899999999985 8889999999999 7998874

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.45  E-value=0.017  Score=54.23  Aligned_cols=75  Identities=25%  Similarity=0.405  Sum_probs=53.9

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ...+|+|+|+|.+|..++++|...|..+++++|.+.                   .|++.+++.+..     .+..    
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g~-----~~~~----  228 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELGG-----NAVP----  228 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcCC-----eEEe----
Confidence            489999999999999999999998999999987432                   355555544321     1111    


Q ss_pred             cCCcchhhhccCCEEEecCCCHHH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSIEA  142 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~~~  142 (328)
                      . +...+.+.++|+||.|+.+...
T Consensus       229 ~-~~~~~~l~~aDvVi~at~~~~~  251 (311)
T cd05213         229 L-DELLELLNEADVVISATGAPHY  251 (311)
T ss_pred             H-HHHHHHHhcCCEEEECCCCCch
Confidence            1 1124556789999999887665

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.39  E-value=0.013  Score=55.16  Aligned_cols=75  Identities=25%  Similarity=0.303  Sum_probs=53.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCc-EEEEEec
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV-NIVPHFC  117 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v-~v~~~~~  117 (328)
                      ..||.|||+|.+|+.++-.|+..|+- +|.|+|-                   .+.|++..+.-|+...|.. ++.... 
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~-   65 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYA-   65 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEe-
Confidence            56999999999999999999999995 7999983                   2345666677777665432 222211 


Q ss_pred             ccCCcchhhhccCCEEEecCC
Q 020259          118 RIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d  138 (328)
                          .+.+-++++|+||.+..
T Consensus        66 ----~~~~~~~~adivIitag   82 (315)
T PRK00066         66 ----GDYSDCKDADLVVITAG   82 (315)
T ss_pred             ----CCHHHhCCCCEEEEecC
Confidence                23455799999977644

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=96.25  E-value=0.03  Score=42.58  Aligned_cols=78  Identities=18%  Similarity=0.379  Sum_probs=49.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC--CeEEEE-eCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           42 RILVVGAGGLGCELLKDLALSGF--KNLEVI-DMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv--g~itlv-D~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ||.+||+|.+|..+++.|...|+  .++.++ +.+.                   .|++.    +.+..+ +.+.     
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~-------------------~~~~~----~~~~~~-~~~~-----   51 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP-------------------EKAAE----LAKEYG-VQAT-----   51 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH-------------------HHHHH----HHHHCT-TEEE-----
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH-------------------HHHHH----HHHhhc-cccc-----
Confidence            58999999999999999999994  355544 3111                   23333    333333 1111     


Q ss_pred             cCCcchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSIEARSYINAV  149 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~  149 (328)
                       .....+.++.+|+||.|+.+......+.++
T Consensus        52 -~~~~~~~~~~advvilav~p~~~~~v~~~i   81 (96)
T PF03807_consen   52 -ADDNEEAAQEADVVILAVKPQQLPEVLSEI   81 (96)
T ss_dssp             -SEEHHHHHHHTSEEEE-S-GGGHHHHHHHH
T ss_pred             -cCChHHhhccCCEEEEEECHHHHHHHHHHH
Confidence             113567778999999999987776666655

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.25  E-value=0.015  Score=51.42  Aligned_cols=84  Identities=24%  Similarity=0.241  Sum_probs=58.6

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      | ++++|+|||.|.+|..=++.|..+|. +++++-++. +                 +.   +...+.+ ++   +....
T Consensus        10 l-~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~-~-----------------~e---l~~~~~~-~~---i~~~~   62 (210)
T COG1648          10 L-EGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEF-E-----------------PE---LKALIEE-GK---IKWIE   62 (210)
T ss_pred             c-CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCc-c-----------------HH---HHHHHHh-cC---cchhh
Confidence            5 58899999999999999999999997 788875433 1                 11   1111111 21   22222


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .   ....+.+..+++||.|+++.+....+.+.|
T Consensus        63 ~---~~~~~~~~~~~lviaAt~d~~ln~~i~~~a   93 (210)
T COG1648          63 R---EFDAEDLDDAFLVIAATDDEELNERIAKAA   93 (210)
T ss_pred             c---ccChhhhcCceEEEEeCCCHHHHHHHHHHH
Confidence            2   224455566999999999999888888888

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=96.21  E-value=0.032  Score=52.34  Aligned_cols=73  Identities=25%  Similarity=0.300  Sum_probs=51.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCC---cEEEEEec
Q 020259           42 RILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG---VNIVPHFC  117 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~---v~v~~~~~  117 (328)
                      ||.|||+|.+|+.+|-.|+..|+ ++|.|+|-                   .+.|++..+--|+...+.   .+++... 
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~~-   60 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIRA-   60 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEEE-
Confidence            68999999999999999999998 57999982                   234566666666664432   1222222 


Q ss_pred             ccCCcchhhhccCCEEEecCC
Q 020259          118 RIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d  138 (328)
                          .+.+-++++|+||.+..
T Consensus        61 ----~~y~~~~~aDivvitaG   77 (307)
T cd05290          61 ----GDYDDCADADIIVITAG   77 (307)
T ss_pred             ----CCHHHhCCCCEEEECCC
Confidence                23567899999977754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.19  E-value=0.02  Score=42.20  Aligned_cols=58  Identities=28%  Similarity=0.456  Sum_probs=42.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEE
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIV  113 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~  113 (328)
                      ||+|||.|.+|+|+|..|...|. ++|+++...-         +.  ...+..-++.+.+.+++.  ++++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~---------~~--~~~~~~~~~~~~~~l~~~--gV~v~   58 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR---------LL--PGFDPDAAKILEEYLRKR--GVEVH   58 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS---------SS--TTSSHHHHHHHHHHHHHT--TEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch---------hh--hhcCHHHHHHHHHHHHHC--CCEEE
Confidence            68999999999999999999996 8999875442         11  223344466677777776  44443

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.17  E-value=0.02  Score=48.09  Aligned_cols=88  Identities=22%  Similarity=0.300  Sum_probs=53.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHH--hhCCCcEEEEEeccc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVM--ERVSGVNIVPHFCRI  119 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~--~lnp~v~v~~~~~~~  119 (328)
                      ||.|+|+|..|+.+|..|+..| .+++|+..+.-                   .++.+.+.=.  ...|+.+... .-.+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~-------------------~~~~i~~~~~n~~~~~~~~l~~-~i~~   59 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEE-------------------QIEEINETRQNPKYLPGIKLPE-NIKA   59 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHH-------------------HHHHHHHHTSETTTSTTSBEET-TEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHH-------------------HHHHHHHhCCCCCCCCCcccCc-cccc
Confidence            6899999999999999999999 48999876541                   1111111100  0122222211 0112


Q ss_pred             CCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          120 EDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .....+.++++|+||.++.+...+..+.++.
T Consensus        60 t~dl~~a~~~ad~IiiavPs~~~~~~~~~l~   90 (157)
T PF01210_consen   60 TTDLEEALEDADIIIIAVPSQAHREVLEQLA   90 (157)
T ss_dssp             ESSHHHHHTT-SEEEE-S-GGGHHHHHHHHT
T ss_pred             ccCHHHHhCcccEEEecccHHHHHHHHHHHh
Confidence            2234567899999999999877776666655

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=96.14  E-value=0.022  Score=52.45  Aligned_cols=33  Identities=18%  Similarity=0.336  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +.+|+|+|+||.+..++..|...|+++|+|++.
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR  154 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR  154 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            358999999999999999999999999999873

>PLN00203 glutamyl-tRNA reductase

Probab=96.11  E-value=0.014  Score=58.60  Aligned_cols=77  Identities=22%  Similarity=0.354  Sum_probs=53.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      .+.+|+|||+|.+|..++++|...|+.++++++.+                   ..|++.+++.+    +.+.+...+. 
T Consensus       265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~~~-  320 (519)
T PLN00203        265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYKPL-  320 (519)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEeecH-
Confidence            47899999999999999999999999999998632                   13555555443    2333222111 


Q ss_pred             cCCcchhhhccCCEEEecCCCHH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSIE  141 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~~  141 (328)
                        +...+.+.++|+||.|+....
T Consensus       321 --~dl~~al~~aDVVIsAT~s~~  341 (519)
T PLN00203        321 --DEMLACAAEADVVFTSTSSET  341 (519)
T ss_pred             --hhHHHHHhcCCEEEEccCCCC
Confidence              123466789999999976543

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.10  E-value=0.0097  Score=58.25  Aligned_cols=75  Identities=20%  Similarity=0.288  Sum_probs=52.3

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      + .+.+|+|+|+|.+|..+++.|...|+.+++++|.+.                   .|++.+++.+.    . .  ..+
T Consensus       178 l-~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~-------------------~ra~~la~~~g----~-~--~i~  230 (417)
T TIGR01035       178 L-KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY-------------------ERAEDLAKELG----G-E--AVK  230 (417)
T ss_pred             c-cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHcC----C-e--Eee
Confidence            5 578999999999999999999999999999987431                   34444444322    1 1  110


Q ss_pred             cccCCcchhhhccCCEEEecCCCHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIE  141 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~  141 (328)
                        . +...+.+.++|+||+|+.+..
T Consensus       231 --~-~~l~~~l~~aDvVi~aT~s~~  252 (417)
T TIGR01035       231 --F-EDLEEYLAEADIVISSTGAPH  252 (417)
T ss_pred             --H-HHHHHHHhhCCEEEECCCCCC
Confidence              0 123456678999999987544

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.09  E-value=0.055  Score=53.63  Aligned_cols=85  Identities=15%  Similarity=0.085  Sum_probs=61.1

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      | ++.+|+|||.|.++..=++.|..+|. ++|++-++.            .             +.++++-..-+++...
T Consensus        10 l-~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~------------~-------------~~~~~l~~~~~i~~~~   62 (457)
T PRK10637         10 L-RDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAF------------I-------------PQFTAWADAGMLTLVE   62 (457)
T ss_pred             c-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCC------------C-------------HHHHHHHhCCCEEEEe
Confidence            6 58999999999999999999999997 799974331            1             1111111122344444


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVAC  151 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~  151 (328)
                      ...   ..+.++++++||.|+|+.+.-..+.+.|.
T Consensus        63 ~~~---~~~dl~~~~lv~~at~d~~~n~~i~~~a~   94 (457)
T PRK10637         63 GPF---DESLLDTCWLAIAATDDDAVNQRVSEAAE   94 (457)
T ss_pred             CCC---ChHHhCCCEEEEECCCCHHHhHHHHHHHH
Confidence            443   35667899999999999988888888883

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.09  E-value=0.044  Score=54.75  Aligned_cols=88  Identities=17%  Similarity=0.221  Sum_probs=70.9

Q ss_pred             cHHHHHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC
Q 020259           30 GTELRDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS  108 (328)
Q Consensus        30 G~~~q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp  108 (328)
                      -..-++.+ .+++|+|-| .|++|+|+++.++..+.++|.++|.|.                   +|-..+...+++..|
T Consensus       241 ~~~i~~~~-~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E-------------------~~~~~i~~el~~~~~  300 (588)
T COG1086         241 TELIGAML-TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDE-------------------YKLYLIDMELREKFP  300 (588)
T ss_pred             HHHHHhHc-CCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCch-------------------HHHHHHHHHHHhhCC
Confidence            35667778 799999998 678999999999999999999998555                   456667788888888


Q ss_pred             CcEEEEEecccCCcc--hhhhcc--CCEEEecC
Q 020259          109 GVNIVPHFCRIEDKD--ISFYND--FNIIVLGL  137 (328)
Q Consensus       109 ~v~v~~~~~~~~~~~--~~~~~~--~dvVi~~~  137 (328)
                      ..++..+-.++.+.+  ...+++  .|+|+-|.
T Consensus       301 ~~~~~~~igdVrD~~~~~~~~~~~kvd~VfHAA  333 (588)
T COG1086         301 ELKLRFYIGDVRDRDRVERAMEGHKVDIVFHAA  333 (588)
T ss_pred             CcceEEEecccccHHHHHHHHhcCCCceEEEhh
Confidence            889998888887754  555666  88888763

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.07  E-value=0.04  Score=52.09  Aligned_cols=76  Identities=20%  Similarity=0.239  Sum_probs=56.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~-l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      .++++|||+|+.|...++.|. ..|+.++++++.+                   ..|++.+++++++.. .+++...   
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~-------------------~~~a~~~a~~~~~~~-g~~v~~~---  185 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD-------------------SAKAEALALQLSSLL-GIDVTAA---  185 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhhc-CceEEEe---
Confidence            458999999999999999997 5788999998532                   258888888887543 2344332   


Q ss_pred             cCCcchhhhccCCEEEecCCCH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSI  140 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~  140 (328)
                        +...+.+.++|+|++|+.+.
T Consensus       186 --~~~~~av~~aDiVvtaT~s~  205 (326)
T TIGR02992       186 --TDPRAAMSGADIIVTTTPSE  205 (326)
T ss_pred             --CCHHHHhccCCEEEEecCCC
Confidence              22355678999999998763

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.04  E-value=0.029  Score=52.89  Aligned_cols=33  Identities=15%  Similarity=0.292  Sum_probs=30.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|.+|+.+|.+++.+|. .++++|.+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            579999999999999999999998 899999654

>PRK06141 ornithine cyclodeaminase; Validated

Probab=95.98  E-value=0.038  Score=52.02  Aligned_cols=76  Identities=25%  Similarity=0.176  Sum_probs=55.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ...+|+|||+|+.|...++.+.+ .++.+|++++.+                   ..|++..++.+++...  .+...  
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~--~~~~~--  180 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQGF--DAEVV--  180 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--ceEEe--
Confidence            36899999999999999997765 688899998622                   3678888888776422  22221  


Q ss_pred             ccCCcchhhhccCCEEEecCCCH
Q 020259          118 RIEDKDISFYNDFNIIVLGLDSI  140 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d~~  140 (328)
                         +...+.+.++|+|++|+.+.
T Consensus       181 ---~~~~~av~~aDIVi~aT~s~  200 (314)
T PRK06141        181 ---TDLEAAVRQADIISCATLST  200 (314)
T ss_pred             ---CCHHHHHhcCCEEEEeeCCC
Confidence               22355678999999988753

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.98  E-value=0.035  Score=51.88  Aligned_cols=72  Identities=25%  Similarity=0.347  Sum_probs=52.3

Q ss_pred             EEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCC---cEEEEEecc
Q 020259           43 ILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG---VNIVPHFCR  118 (328)
Q Consensus        43 VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~---v~v~~~~~~  118 (328)
                      |.|||+|.+|+.+|-.|+..|+ .+|+|+|.+                   +.|++..+..|....+.   +++..    
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~----   57 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR----   57 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE----
Confidence            5799999999999999999998 569999832                   34667777777776554   22221    


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                        ..+.+-++++|+||.|...
T Consensus        58 --~~~~~~l~~aDiVIitag~   76 (300)
T cd00300          58 --GGDYADAADADIVVITAGA   76 (300)
T ss_pred             --CCCHHHhCCCCEEEEcCCC
Confidence              1124578999999888653

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.96  E-value=0.073  Score=42.60  Aligned_cols=95  Identities=23%  Similarity=0.298  Sum_probs=54.2

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCC-CCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMED-VGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~d-iG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      ||.||| .|-+|.++++.|...-  .+.++-             ++..+. .|+.=+....    .......+....   
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp--~~e~~~-------------~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~---   58 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHP--DFELVA-------------LVSSSRSAGKPLSEVFP----HPKGFEDLSVED---   58 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTS--TEEEEE-------------EEESTTTTTSBHHHTTG----GGTTTEEEBEEE---
T ss_pred             CEEEECCCCHHHHHHHHHHhcCC--CccEEE-------------eeeeccccCCeeehhcc----ccccccceeEee---
Confidence            699999 9999999999999732  333321             122222 4553222111    111122222222   


Q ss_pred             CCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEee
Q 020259          120 EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGG  174 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~  174 (328)
                        .+.+.+++.|+||.|+++.....+...+.              +.++++|+.+
T Consensus        59 --~~~~~~~~~Dvvf~a~~~~~~~~~~~~~~--------------~~g~~ViD~s   97 (121)
T PF01118_consen   59 --ADPEELSDVDVVFLALPHGASKELAPKLL--------------KAGIKVIDLS   97 (121)
T ss_dssp             --TSGHHHTTESEEEE-SCHHHHHHHHHHHH--------------HTTSEEEESS
T ss_pred             --cchhHhhcCCEEEecCchhHHHHHHHHHh--------------hCCcEEEeCC
Confidence              24455699999999999866666555554              4567777644

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=95.92  E-value=0.022  Score=53.12  Aligned_cols=115  Identities=18%  Similarity=0.168  Sum_probs=65.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh-CCCcEEEEEecc-c
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER-VSGVNIVPHFCR-I  119 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l-np~v~v~~~~~~-~  119 (328)
                      +|.+||+|.+|..++++|...|. +++++|.+.-....+..        .|-..+.-..+.++.. ++++-+...+.. .
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~~--------~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~   72 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALAE--------EGATGADSLEELVAKLPAPRVVWLMVPAGEI   72 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH--------CCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence            69999999999999999999997 68999876422211110        1111111122222222 355555555443 1


Q ss_pred             -CCc---chhhhccCCEEEec-CCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecce
Q 020259          120 -EDK---DISFYNDFNIIVLG-LDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF  178 (328)
Q Consensus       120 -~~~---~~~~~~~~dvVi~~-~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~  178 (328)
                       .+.   -...++.-++||++ +.++.....+.+.+             ++.++.++++.+.|.
T Consensus        73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~-------------~~~g~~~~dapvsG~  123 (301)
T PRK09599         73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELL-------------AEKGIHFVDVGTSGG  123 (301)
T ss_pred             HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHH-------------HHcCCEEEeCCCCcC
Confidence             111   11233445677777 33444444455555             566888888877764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.91  E-value=0.038  Score=54.38  Aligned_cols=35  Identities=34%  Similarity=0.369  Sum_probs=31.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ++.+|+|+|+|++|.++|+.|+..|. +++++|.+.
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            57899999999999999999999997 799998653

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.88  E-value=0.019  Score=56.35  Aligned_cols=75  Identities=25%  Similarity=0.391  Sum_probs=52.4

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      + .+.+|+|+|+|.+|..+++.|...|+.+++++|.+.                   .|++.+++.+.    . .+..  
T Consensus       180 ~-~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~-------------------~ra~~la~~~g----~-~~~~--  232 (423)
T PRK00045        180 L-SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL-------------------ERAEELAEEFG----G-EAIP--  232 (423)
T ss_pred             c-cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH-------------------HHHHHHHHHcC----C-cEee--
Confidence            5 578999999999999999999999999999987432                   34444444432    1 1111  


Q ss_pred             cccCCcchhhhccCCEEEecCCCHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIE  141 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~  141 (328)
                        + +...+.+.++|+||+|+.+..
T Consensus       233 --~-~~~~~~l~~aDvVI~aT~s~~  254 (423)
T PRK00045        233 --L-DELPEALAEADIVISSTGAPH  254 (423)
T ss_pred             --H-HHHHHHhccCCEEEECCCCCC
Confidence              1 112455678999999987544

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.87  E-value=0.049  Score=51.41  Aligned_cols=34  Identities=18%  Similarity=0.436  Sum_probs=30.9

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +..||.|||+|.+|+.++-.++..|...+.|+|-
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi   38 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI   38 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence            4679999999999999999999999867999984

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.79  E-value=0.055  Score=50.66  Aligned_cols=74  Identities=12%  Similarity=0.054  Sum_probs=56.0

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ...+++|+|+|..|...++.+.. .|+.++.++|.+                   ..|++..+++++..+.  .+.  . 
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~--~-  179 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE--P-  179 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE--E-
Confidence            36889999999999999999974 688889998633                   3578888888876432  222  1 


Q ss_pred             ccCCcchhhhccCCEEEecCCC
Q 020259          118 RIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                         +..++.+.++|+||.|+.+
T Consensus       180 ---~~~~~av~~aDiVitaT~s  198 (304)
T PRK07340        180 ---LDGEAIPEAVDLVVTATTS  198 (304)
T ss_pred             ---CCHHHHhhcCCEEEEccCC
Confidence               2235567899999999886

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.76  E-value=0.014  Score=52.28  Aligned_cols=38  Identities=32%  Similarity=0.515  Sum_probs=34.8

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCc
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFK--NLEVIDMDR   74 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg--~itlvD~d~   74 (328)
                      .+ ++.+|+|+|+|+.|..+++.|...|++  +|+++|.+-
T Consensus        22 ~l-~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          22 KI-EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             Cc-cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            46 688999999999999999999999999  999999763

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PTZ00117 malate dehydrogenase; Provisional

Probab=95.72  E-value=0.04  Score=52.00  Aligned_cols=35  Identities=17%  Similarity=0.324  Sum_probs=31.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++.+|.|||+|.+|+.++-.|+..|+..+.|+|-+
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~   38 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI   38 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence            46799999999999999999999998889999943

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=95.71  E-value=0.027  Score=52.25  Aligned_cols=77  Identities=27%  Similarity=0.457  Sum_probs=45.4

Q ss_pred             EEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCC--cE--EEEEec
Q 020259           43 ILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG--VN--IVPHFC  117 (328)
Q Consensus        43 VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~--v~--v~~~~~  117 (328)
                      |||.| +|++|+|+++.|+..|..+|.++|.+.-...                   .+...+++..|+  ++  +.....
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~-------------------~l~~~l~~~~~~~~v~~~~~~vig   61 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLY-------------------ELERELRSRFPDPKVRFEIVPVIG   61 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHH-------------------HHHHHCHHHC--TTCEEEEE--CT
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHH-------------------HHHHHHhhcccccCcccccCceee
Confidence            67786 8899999999999999999999997764433                   344444443333  32  234445


Q ss_pred             ccCCcc--hhhhc--cCCEEEecCC
Q 020259          118 RIEDKD--ISFYN--DFNIIVLGLD  138 (328)
Q Consensus       118 ~~~~~~--~~~~~--~~dvVi~~~d  138 (328)
                      ++.+..  ...++  +.|+|+-+..
T Consensus        62 Dvrd~~~l~~~~~~~~pdiVfHaAA   86 (293)
T PF02719_consen   62 DVRDKERLNRIFEEYKPDIVFHAAA   86 (293)
T ss_dssp             SCCHHHHHHHHTT--T-SEEEE---
T ss_pred             cccCHHHHHHHHhhcCCCEEEEChh
Confidence            554432  34455  7788877644

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=95.70  E-value=0.054  Score=44.02  Aligned_cols=80  Identities=18%  Similarity=0.307  Sum_probs=46.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      .-+|.|||+|-+|..+++.|..+|. .|.-+               +.       +....++++.+.-+...+..     
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v---------------~s-------rs~~sa~~a~~~~~~~~~~~-----   61 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGH-EVVGV---------------YS-------RSPASAERAAAFIGAGAILD-----   61 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTS-EEEEE---------------SS-------CHH-HHHHHHC--TT----------
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCC-eEEEE---------------Ee-------CCcccccccccccccccccc-----
Confidence            4679999999999999999999997 45443               22       23344555555544433221     


Q ss_pred             CCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          120 EDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                         ..+.++.+|+|+.++.+.........++
T Consensus        62 ---~~~~~~~aDlv~iavpDdaI~~va~~La   89 (127)
T PF10727_consen   62 ---LEEILRDADLVFIAVPDDAIAEVAEQLA   89 (127)
T ss_dssp             ---TTGGGCC-SEEEE-S-CCHHHHHHHHHH
T ss_pred             ---cccccccCCEEEEEechHHHHHHHHHHH
Confidence               2455688999988876655554444444

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.70  E-value=0.043  Score=51.60  Aligned_cols=74  Identities=19%  Similarity=0.284  Sum_probs=52.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCc---EEEEE
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV---NIVPH  115 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v---~v~~~  115 (328)
                      ..||.|||+|.+|+.+|-.|+..|.. +|.|+|-.                   +.|++..+.-|+...|..   ++...
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~   63 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPKIEAD   63 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence            46899999999999999999999985 69999832                   235666666666654332   23221


Q ss_pred             ecccCCcchhhhccCCEEEecCC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                            .+.+.++++|+||.+..
T Consensus        64 ------~dy~~~~~adivvitaG   80 (312)
T cd05293          64 ------KDYSVTANSKVVIVTAG   80 (312)
T ss_pred             ------CCHHHhCCCCEEEECCC
Confidence                  13345899999987644

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.67  E-value=0.079  Score=49.53  Aligned_cols=32  Identities=25%  Similarity=0.510  Sum_probs=29.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~   36 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM   36 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            579999999999999999999997 79999854

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=95.63  E-value=0.054  Score=48.19  Aligned_cols=77  Identities=25%  Similarity=0.413  Sum_probs=58.4

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ..++++++| +||+|-+++|.|...|+..+.|.|...    |                 -.+...|++.||.+++.....
T Consensus         4 tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~E----n-----------------~~a~akL~ai~p~~~v~F~~~   62 (261)
T KOG4169|consen    4 TGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEE----N-----------------PEAIAKLQAINPSVSVIFIKC   62 (261)
T ss_pred             cCceEEEecCCchhhHHHHHHHHHcCchheeehhhhh----C-----------------HHHHHHHhccCCCceEEEEEe
Confidence            367788885 999999999999999998877765211    1                 234567899999999999998


Q ss_pred             ccCCcc---------hhhhccCCEEEec
Q 020259          118 RIEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       118 ~~~~~~---------~~~~~~~dvVi~~  136 (328)
                      ++....         ...+...|++|+.
T Consensus        63 DVt~~~~~~~~f~ki~~~fg~iDIlINg   90 (261)
T KOG4169|consen   63 DVTNRGDLEAAFDKILATFGTIDILING   90 (261)
T ss_pred             ccccHHHHHHHHHHHHHHhCceEEEEcc
Confidence            887631         1234567888876

>PLN02602 lactate dehydrogenase

Probab=95.61  E-value=0.059  Score=51.51  Aligned_cols=73  Identities=14%  Similarity=0.295  Sum_probs=51.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC---CcEEEEEe
Q 020259           41 ARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS---GVNIVPHF  116 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp---~v~v~~~~  116 (328)
                      .||.|||+|.+|+.+|-.|+..|+ .+|.|+|-                   .+.|++..+--|+...|   .++|... 
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi-------------------~~~~~~g~a~DL~~~~~~~~~~~i~~~-   97 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV-------------------NPDKLRGEMLDLQHAAAFLPRTKILAS-   97 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence            699999999999999999999998 57999983                   22345555555555433   2333321 


Q ss_pred             cccCCcchhhhccCCEEEecCC
Q 020259          117 CRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                           .+.+.++++|+||.+..
T Consensus        98 -----~dy~~~~daDiVVitAG  114 (350)
T PLN02602         98 -----TDYAVTAGSDLCIVTAG  114 (350)
T ss_pred             -----CCHHHhCCCCEEEECCC
Confidence                 13455899999988754

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.56  E-value=0.055  Score=49.66  Aligned_cols=73  Identities=21%  Similarity=0.280  Sum_probs=50.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ...+++|+|+||+|..++..|+..|. +++++|.+                   ..|++.+++.+.+. +.+.  ...  
T Consensus       116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~-------------------~~~~~~la~~~~~~-~~~~--~~~--  170 (270)
T TIGR00507       116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT-------------------VSKAEELAERFQRY-GEIQ--AFS--  170 (270)
T ss_pred             cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHhhc-CceE--Eec--
Confidence            36789999999999999999999996 89998632                   24677777776543 2222  111  


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      .   ......++|+||+|+..
T Consensus       171 ~---~~~~~~~~DivInatp~  188 (270)
T TIGR00507       171 M---DELPLHRVDLIINATSA  188 (270)
T ss_pred             h---hhhcccCccEEEECCCC
Confidence            1   11123578999999764

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.48  E-value=0.062  Score=50.31  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|.|||+|.+|+.++++|+..|. .++++|.+
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~   36 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR   36 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4579999999999999999999997 78999865

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=95.39  E-value=0.15  Score=47.67  Aligned_cols=34  Identities=21%  Similarity=0.450  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF-KNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d   73 (328)
                      ..+|+|||+|.+|..+++.|...|. .+++++|.+
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~   40 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS   40 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            4679999999999999999999997 478888743

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.35  E-value=0.12  Score=51.59  Aligned_cols=121  Identities=17%  Similarity=0.096  Sum_probs=68.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCCh---HHHHHHHHHHhh-CCCcEEEEE
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKP---KAEVAAKRVMER-VSGVNIVPH  115 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~---Ka~a~~~~l~~l-np~v~v~~~  115 (328)
                      -++|.+||+|..|+.+|+||+..|. +++++|.+.=....+...+ ..   .|..   -+....+.++.+ .|++-+...
T Consensus         6 ~~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~~-~~---~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v   80 (493)
T PLN02350          6 LSRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA-KK---EGNLPLYGFKDPEDFVLSIQKPRSVIILV   80 (493)
T ss_pred             CCCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHhh-hh---cCCcccccCCCHHHHHhcCCCCCEEEEEC
Confidence            3579999999999999999999998 8999986432111111100 00   0110   111222233221 255555444


Q ss_pred             eccc--CCc---chhhhccCCEEEecCC-CHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecce
Q 020259          116 FCRI--EDK---DISFYNDFNIIVLGLD-SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF  178 (328)
Q Consensus       116 ~~~~--~~~---~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~  178 (328)
                      +..-  ++.   -.+.++.-|+||++.. +++.-..+.+.+             .+.++.|+++.+.|.
T Consensus        81 ~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l-------------~~~Gi~fldapVSGG  136 (493)
T PLN02350         81 KAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEA-------------AEKGLLYLGMGVSGG  136 (493)
T ss_pred             CCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHH-------------HHcCCeEEeCCCcCC
Confidence            3321  110   1223456678888844 455555555555             567899999988764

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.35  E-value=0.046  Score=50.71  Aligned_cols=33  Identities=30%  Similarity=0.488  Sum_probs=30.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|..|+.+|.+++++|. .++++|.+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~   38 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE   38 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            489999999999999999999998 799999554

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=95.32  E-value=0.034  Score=52.66  Aligned_cols=36  Identities=14%  Similarity=0.246  Sum_probs=32.9

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | .+.+|+|||+|-+|.-++++|...|+++|++....
T Consensus       172 l-~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt  207 (338)
T PRK00676        172 S-KKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQ  207 (338)
T ss_pred             c-cCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            6 68999999999999999999999999999998544

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.26  E-value=0.094  Score=49.31  Aligned_cols=80  Identities=24%  Similarity=0.269  Sum_probs=54.1

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      ..| ..++|.|||+|.+|.++|+.|...|+ ++..+|...-..                              +.+.  .
T Consensus       132 ~~l-~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~~------------------------------~~~~--~  177 (312)
T PRK15469        132 YHR-EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKSW------------------------------PGVQ--S  177 (312)
T ss_pred             CCc-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCCC------------------------------CCce--e
Confidence            457 58999999999999999999999998 677777421000                              0100  0


Q ss_pred             EecccCCcchhhhccCCEEEecCC-CHHHHHHHHHHH
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVA  150 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d-~~~~~~~l~~~~  150 (328)
                      .. . ...-.+.++++|+|+.++. +.+++..++.-.
T Consensus       178 ~~-~-~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~  212 (312)
T PRK15469        178 FA-G-REELSAFLSQTRVLINLLPNTPETVGIINQQL  212 (312)
T ss_pred             ec-c-cccHHHHHhcCCEEEECCCCCHHHHHHhHHHH
Confidence            00 0 1123577889999988754 667777777544

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.26  E-value=0.11  Score=48.99  Aligned_cols=77  Identities=16%  Similarity=0.188  Sum_probs=56.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~-l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..+++|||+|+.|...+..+. ..|+.++.++|.+                   ..|++.+++++++.. .+++...   
T Consensus       127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~-~~~~~~~---  183 (325)
T PRK08618        127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKF-NTEIYVV---  183 (325)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhc-CCcEEEe---
Confidence            577999999999998888775 5689999998633                   257788888877543 2333332   


Q ss_pred             cCCcchhhhccCCEEEecCCCHH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSIE  141 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~~  141 (328)
                        +..++.+.++|+|++|+.+.+
T Consensus       184 --~~~~~~~~~aDiVi~aT~s~~  204 (325)
T PRK08618        184 --NSADEAIEEADIIVTVTNAKT  204 (325)
T ss_pred             --CCHHHHHhcCCEEEEccCCCC
Confidence              123556789999999988754

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=95.20  E-value=0.24  Score=46.70  Aligned_cols=79  Identities=16%  Similarity=0.146  Sum_probs=53.5

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      +.| ++++|.|||+|.+|..+|+||..+|+ ++++.|...                    ++.   +...+  ..+++. 
T Consensus        12 ~~L-kgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~--------------------~s~---~~A~~--~G~~v~-   63 (335)
T PRK13403         12 ELL-QGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPG--------------------KSF---EVAKA--DGFEVM-   63 (335)
T ss_pred             hhh-CcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcc--------------------hhh---HHHHH--cCCEEC-
Confidence            668 69999999999999999999999999 677765211                    110   01111  122210 


Q ss_pred             EecccCCcchhhhccCCEEEecCCCHHHHHHHHH
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLDSIEARSYINA  148 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~  148 (328)
                             ...+.++.+|+|+.++.+...+..+++
T Consensus        64 -------sl~Eaak~ADVV~llLPd~~t~~V~~~   90 (335)
T PRK13403         64 -------SVSEAVRTAQVVQMLLPDEQQAHVYKA   90 (335)
T ss_pred             -------CHHHHHhcCCEEEEeCCChHHHHHHHH
Confidence                   246778899999888766666665553

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.16  E-value=0.044  Score=50.75  Aligned_cols=32  Identities=31%  Similarity=0.621  Sum_probs=29.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|.|||+|.+|+.+|..|+..|. +++++|.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~   35 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS   35 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            579999999999999999999997 79999854

>PRK08291 ectoine utilization protein EutC; Validated

Probab=95.13  E-value=0.15  Score=48.39  Aligned_cols=76  Identities=25%  Similarity=0.249  Sum_probs=55.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..+++|+|+|+.|...+..|.. .|+.++++++.+                   ..|++.+++++++.. .+++...   
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~---  188 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVA---  188 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEe---
Confidence            3689999999999999999985 578899998532                   247888888876533 2333322   


Q ss_pred             cCCcchhhhccCCEEEecCCCH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSI  140 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~  140 (328)
                        +...+.+.++|+|++|+...
T Consensus       189 --~d~~~al~~aDiVi~aT~s~  208 (330)
T PRK08291        189 --RDVHEAVAGADIIVTTTPSE  208 (330)
T ss_pred             --CCHHHHHccCCEEEEeeCCC
Confidence              12356678899999997763

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.12  E-value=0.11  Score=51.75  Aligned_cols=44  Identities=25%  Similarity=0.271  Sum_probs=34.2

Q ss_pred             ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           29 PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        29 ~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +|...|..-....+|+|+|+|++|.++|+.|...|. +++++|..
T Consensus         5 ~~~~~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~   48 (480)
T PRK01438          5 PGLTSWHSDWQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG   48 (480)
T ss_pred             cchhhcccCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            344444332146789999999999999999999998 69999854

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.10  E-value=0.19  Score=45.76  Aligned_cols=79  Identities=19%  Similarity=0.335  Sum_probs=50.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC--CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGF--KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gv--g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      .+|.|||+|.+|..+++.|...|.  ..+.++|.+.                   .+++.    +.+.. .+.+      
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~~----~~~~~-g~~~------   52 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRAA----LAEEY-GVRA------   52 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHHH----HHHhc-CCee------
Confidence            469999999999999999999984  3566665221                   12222    22211 1221      


Q ss_pred             cCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                       .....+.+.++|+||.|+.....+..+..+.
T Consensus        53 -~~~~~~~~~~advVil~v~~~~~~~v~~~l~   83 (267)
T PRK11880         53 -ATDNQEAAQEADVVVLAVKPQVMEEVLSELK   83 (267)
T ss_pred             -cCChHHHHhcCCEEEEEcCHHHHHHHHHHHH
Confidence             1223455678999999987766665555543

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=95.02  E-value=0.037  Score=55.00  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=30.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      ++|.|||+|..|..+|.||+..|. +++++|.+.=
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHH
Confidence            579999999999999999999998 7999986543

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.01  E-value=0.15  Score=55.24  Aligned_cols=24  Identities=25%  Similarity=0.281  Sum_probs=21.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhC
Q 020259           40 YARILVVGAGGLGCELLKDLALSG   63 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~G   63 (328)
                      .++|+|+|+|.+|..+++.|+..+
T Consensus       569 ~~rIlVLGAG~VG~~~a~~La~~~  592 (1042)
T PLN02819        569 SQNVLILGAGRVCRPAAEYLASVK  592 (1042)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCc
Confidence            579999999999999999998753

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=95.00  E-value=0.19  Score=46.35  Aligned_cols=40  Identities=28%  Similarity=0.474  Sum_probs=35.7

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHh----CC------CeEEEEeCCcc
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALS----GF------KNLEVIDMDRI   75 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~----Gv------g~itlvD~d~v   75 (328)
                      ++| ++.+|+++|+|+.|.-+++.|+.+    |+      ++|.++|.+=+
T Consensus        21 ~~l-~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gl   70 (279)
T cd05312          21 KPL-SDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGL   70 (279)
T ss_pred             CCh-hhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCe
Confidence            568 699999999999999999999998    99      79999996643

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=94.98  E-value=0.17  Score=47.36  Aligned_cols=33  Identities=30%  Similarity=0.378  Sum_probs=29.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|+|+|+|++|+-++-.|.++|. .+++++..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence            4579999999999999999999996 79998753

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=94.95  E-value=0.14  Score=41.31  Aligned_cols=96  Identities=22%  Similarity=0.211  Sum_probs=53.1

Q ss_pred             cEEEEcC-ChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           42 RILVVGA-GGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      ||.|+|+ |-+|.++++.+.. .|+.=.-.+|...=        . +-..|+|        +.+..-...+.+       
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~--------~-~~g~d~g--------~~~~~~~~~~~v-------   57 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS--------A-KVGKDVG--------ELAGIGPLGVPV-------   57 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS--------T-TTTSBCH--------HHCTSST-SSBE-------
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc--------c-cccchhh--------hhhCcCCccccc-------
Confidence            6999999 9999999999998 66644555554330        0 0112222        111111112221       


Q ss_pred             CCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259          120 EDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT  175 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~  175 (328)
                      .+..++.+..+|+||+.+ +++.....-+.|             .++++|++.+.+
T Consensus        58 ~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~~-------------~~~g~~~ViGTT   99 (124)
T PF01113_consen   58 TDDLEELLEEADVVIDFT-NPDAVYDNLEYA-------------LKHGVPLVIGTT   99 (124)
T ss_dssp             BS-HHHHTTH-SEEEEES--HHHHHHHHHHH-------------HHHT-EEEEE-S
T ss_pred             chhHHHhcccCCEEEEcC-ChHHhHHHHHHH-------------HhCCCCEEEECC
Confidence            233456667799999998 445555555555             456898886433

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.93  E-value=0.12  Score=48.46  Aligned_cols=32  Identities=34%  Similarity=0.493  Sum_probs=28.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +|.|||+|.+|+.++..|+..|. .++++|.+.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            69999999999999999999997 689988643

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=94.93  E-value=0.13  Score=48.54  Aligned_cols=83  Identities=22%  Similarity=0.135  Sum_probs=53.5

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      ..+ +.++|.|+|+|++|.++|+.|.-.| -.|.--.          |+-         .+.+...+    .+..     
T Consensus       158 ~~~-~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y~~----------r~~---------~~~~~~~~----~~~~-----  207 (336)
T KOG0069|consen  158 YDL-EGKTVGILGLGRIGKAIAKRLKPFG-CVILYHS----------RTQ---------LPPEEAYE----YYAE-----  207 (336)
T ss_pred             ccc-cCCEEEEecCcHHHHHHHHhhhhcc-ceeeeec----------ccC---------CchhhHHH----hccc-----
Confidence            446 5999999999999999999999866 3343321          110         01111111    1211     


Q ss_pred             EecccCCcchhhhccCCEEEe-cCCCHHHHHHHHHHHHH
Q 020259          115 HFCRIEDKDISFYNDFNIIVL-GLDSIEARSYINAVACS  152 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~-~~d~~~~~~~l~~~~~~  152 (328)
                           ....++.+.++|+|+. |-.+.+++..+|.....
T Consensus       208 -----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~  241 (336)
T KOG0069|consen  208 -----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIE  241 (336)
T ss_pred             -----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHH
Confidence                 1234678889998854 56788899999986654

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.91  E-value=0.11  Score=48.64  Aligned_cols=31  Identities=29%  Similarity=0.583  Sum_probs=28.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeC
Q 020259           42 RILVVGAGGLGCELLKDLALSGF-KNLEVIDM   72 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv-g~itlvD~   72 (328)
                      +|.|||+|.+|+.+|-.|+..|+ .++.++|.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~   33 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI   33 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence            69999999999999999999996 68999984

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07680 late competence protein ComER; Validated

Probab=94.88  E-value=0.15  Score=46.89  Aligned_cols=79  Identities=19%  Similarity=0.363  Sum_probs=50.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           42 RILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv---g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +|.|||+|.+|..+++.|...|.   ..++++|.+.                   .+++    .+.+..+.+++.     
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~~----~~~~~~~g~~~~-----   53 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKAY----HIKERYPGIHVA-----   53 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHHH----HHHHHcCCeEEE-----
Confidence            58999999999999999999985   4567765321                   1222    222222333221     


Q ss_pred             cCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                        ....+.+.++|+||.|+.+......+..+.
T Consensus        54 --~~~~~~~~~aDiVilav~p~~~~~vl~~l~   83 (273)
T PRK07680         54 --KTIEEVISQSDLIFICVKPLDIYPLLQKLA   83 (273)
T ss_pred             --CCHHHHHHhCCEEEEecCHHHHHHHHHHHH
Confidence              123455678999999987655555555543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.86  E-value=0.68  Score=36.20  Aligned_cols=81  Identities=22%  Similarity=0.305  Sum_probs=51.9

Q ss_pred             EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCCc
Q 020259           43 ILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK  122 (328)
Q Consensus        43 VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~~  122 (328)
                      |+|+|+|.+|-++++.|...| -.++++|.|.-                   +    .+.+++..  +.  ....+..+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~-------------------~----~~~~~~~~--~~--~i~gd~~~~   52 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPE-------------------R----VEELREEG--VE--VIYGDATDP   52 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHH-------------------H----HHHHHHTT--SE--EEES-TTSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcH-------------------H----HHHHHhcc--cc--cccccchhh
Confidence            689999999999999999955 48999996641                   1    23333332  22  333433332


Q ss_pred             ---chhhhccCCEEEecCCCHHHHHHHHHHHH
Q 020259          123 ---DISFYNDFNIIVLGLDSIEARSYINAVAC  151 (328)
Q Consensus       123 ---~~~~~~~~dvVi~~~d~~~~~~~l~~~~~  151 (328)
                         ...-+++++.|+.++++......+-..++
T Consensus        53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r   84 (116)
T PF02254_consen   53 EVLERAGIEKADAVVILTDDDEENLLIALLAR   84 (116)
T ss_dssp             HHHHHTTGGCESEEEEESSSHHHHHHHHHHHH
T ss_pred             hHHhhcCccccCEEEEccCCHHHHHHHHHHHH
Confidence               23345789999999888766655555553

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=94.86  E-value=0.14  Score=47.96  Aligned_cols=83  Identities=18%  Similarity=0.358  Sum_probs=51.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec---
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC---  117 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~---  117 (328)
                      .||+|+|+|++|+-.+-.|.++| ..++++-.+.                    +    .+++++-  ...+.....   
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~R~~--------------------~----~~~l~~~--GL~i~~~~~~~~   53 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG-HDVTLLVRSR--------------------R----LEALKKK--GLRIEDEGGNFT   53 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC-CeEEEEecHH--------------------H----HHHHHhC--CeEEecCCCccc
Confidence            37999999999999999999999 6777752111                    1    2333332  334443333   


Q ss_pred             --ccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          118 --RIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       118 --~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                        .......+....+|+||.++-+......+..+.
T Consensus        54 ~~~~~~~~~~~~~~~Dlviv~vKa~q~~~al~~l~   88 (307)
T COG1893          54 TPVVAATDAEALGPADLVIVTVKAYQLEEALPSLA   88 (307)
T ss_pred             cccccccChhhcCCCCEEEEEeccccHHHHHHHhh
Confidence              111223455668999988876655444444433

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=94.80  E-value=0.082  Score=52.51  Aligned_cols=120  Identities=14%  Similarity=0.073  Sum_probs=66.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh-CCCcEEEEEecc--
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER-VSGVNIVPHFCR--  118 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l-np~v~v~~~~~~--  118 (328)
                      +|.+||+|..|..+|+||+..|. +++++|.+.-....+...+.  .. -+-.-+....+..+.+ .|++-+...+..  
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~--~g-~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~   76 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHA--KG-KKIVGAYSIEEFVQSLERPRKIMLMVKAGAP   76 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhcc--CC-CCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence            47899999999999999999998 79999876543332221100  00 0000011122333322 355555444331  


Q ss_pred             cCCc---chhhhccCCEEEecCC-CHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecce
Q 020259          119 IEDK---DISFYNDFNIIVLGLD-SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF  178 (328)
Q Consensus       119 ~~~~---~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~  178 (328)
                      +.+.   -...++.-|+||++.. .+..-....+.+             .+.++.|+++++.|-
T Consensus        77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l-------------~~~gi~fvdapVsGG  127 (467)
T TIGR00873        77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKEL-------------KAKGILFVGSGVSGG  127 (467)
T ss_pred             HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHH-------------HhcCCEEEcCCCCCC
Confidence            1111   1234456689998854 333323333344             466888999988763

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=94.77  E-value=0.074  Score=49.57  Aligned_cols=32  Identities=25%  Similarity=0.507  Sum_probs=28.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +|.|||+|.+|..++++|+..|. +++++|.+.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~   33 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQ   33 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            69999999999999999999996 788888654

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=94.76  E-value=0.33  Score=46.06  Aligned_cols=37  Identities=19%  Similarity=0.285  Sum_probs=32.6

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..| .+.+|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       142 ~~l-~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~  178 (330)
T PRK12480        142 KPV-KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAY  178 (330)
T ss_pred             ccc-CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            458 68999999999999999999999997 78888854

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=94.73  E-value=0.065  Score=40.19  Aligned_cols=38  Identities=34%  Similarity=0.420  Sum_probs=34.0

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      + +..+++|+|+|.+|..++..|...|..++.++|.|.+
T Consensus        21 ~-~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi~   58 (86)
T cd05191          21 L-KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDIL   58 (86)
T ss_pred             C-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            6 5889999999999999999999998889999998443

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK05854 short chain dehydrogenase; Provisional

Probab=94.67  E-value=0.2  Score=46.86  Aligned_cols=64  Identities=25%  Similarity=0.330  Sum_probs=44.3

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | +..+++|.| .+|+|.++++.|+..|. ++.+++.+.                   .|++.+.+.+.+.+|..++...
T Consensus        12 l-~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~-------------------~~~~~~~~~l~~~~~~~~v~~~   70 (313)
T PRK05854         12 L-SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNR-------------------AKGEAAVAAIRTAVPDAKLSLR   70 (313)
T ss_pred             c-CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhCCCCceEEE
Confidence            5 577888887 78999999999999997 777765321                   3455555666655555555555


Q ss_pred             ecccCC
Q 020259          116 FCRIED  121 (328)
Q Consensus       116 ~~~~~~  121 (328)
                      ..++.+
T Consensus        71 ~~Dl~d   76 (313)
T PRK05854         71 ALDLSS   76 (313)
T ss_pred             EecCCC
Confidence            555543

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.64  E-value=0.21  Score=46.26  Aligned_cols=31  Identities=26%  Similarity=0.505  Sum_probs=28.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +|+|+|+|++|+.++..|+.+|. +++++|.+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            69999999999999999999995 79999853

>PRK07063 short chain dehydrogenase; Provisional

Probab=94.63  E-value=0.26  Score=44.33  Aligned_cols=80  Identities=24%  Similarity=0.388  Sum_probs=53.3

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++++++|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+++.+.+.++..++..+
T Consensus         5 l-~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   63 (260)
T PRK07063          5 L-AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLD-------------------AALAERAAAAIARDVAGARVLAV   63 (260)
T ss_pred             c-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEE
Confidence            6 578899998 68999999999999997 67777632                   23455556666654455566666


Q ss_pred             ecccCCcc--hh-------hhccCCEEEecC
Q 020259          116 FCRIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      ..++.+..  ..       .+...|++|.+.
T Consensus        64 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~a   94 (260)
T PRK07063         64 PADVTDAASVAAAVAAAEEAFGPLDVLVNNA   94 (260)
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCCcEEEECC
Confidence            66655421  11       234678887764

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.60  E-value=0.33  Score=39.96  Aligned_cols=81  Identities=15%  Similarity=0.330  Sum_probs=49.4

Q ss_pred             EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe------
Q 020259           43 ILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF------  116 (328)
Q Consensus        43 VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~------  116 (328)
                      |+|+|+|++|+-+|-.|..+|. ++++++... .                       .+.+++.  .+.++...      
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~-----------------------~~~~~~~--g~~~~~~~~~~~~~   53 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-R-----------------------LEAIKEQ--GLTITGPDGDETVQ   53 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-H-----------------------HHHHHHH--CEEEEETTEEEEEE
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-c-----------------------HHhhhhe--eEEEEecccceecc
Confidence            7899999999999999999887 688876332 1                       1222221  12221111      


Q ss_pred             -cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          117 -CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       117 -~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                       ...........+.+|+||.|+-+......+..+.
T Consensus        54 ~~~~~~~~~~~~~~~D~viv~vKa~~~~~~l~~l~   88 (151)
T PF02558_consen   54 PPIVISAPSADAGPYDLVIVAVKAYQLEQALQSLK   88 (151)
T ss_dssp             EEEEESSHGHHHSTESEEEE-SSGGGHHHHHHHHC
T ss_pred             cccccCcchhccCCCcEEEEEecccchHHHHHHHh
Confidence             0000011235678999999988877776666643

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK06197 short chain dehydrogenase; Provisional

Probab=94.59  E-value=0.18  Score=46.86  Aligned_cols=35  Identities=29%  Similarity=0.292  Sum_probs=29.3

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .+ ++.+|+|.| .||+|.++++.|+..|. ++.+++.
T Consensus        13 ~~-~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r   48 (306)
T PRK06197         13 DQ-SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR   48 (306)
T ss_pred             cC-CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence            46 578899998 68999999999999997 6777664

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.58  E-value=0.22  Score=45.85  Aligned_cols=80  Identities=16%  Similarity=0.330  Sum_probs=51.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv---g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      +.+|.+||+|-+|..++++|...|.   .+|.++|.+                   +.+++    .+.+.. .+++  . 
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~-------------------~~~~~----~l~~~~-g~~~--~-   54 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN-------------------VSNLK----NASDKY-GITI--T-   54 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC-------------------HHHHH----HHHHhc-CcEE--e-
Confidence            5689999999999999999999885   246665421                   12322    222211 2221  1 


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                          ....+..+++|+||.|+-+......+.++.
T Consensus        55 ----~~~~e~~~~aDiIiLavkP~~~~~vl~~l~   84 (272)
T PRK12491         55 ----TNNNEVANSADILILSIKPDLYSSVINQIK   84 (272)
T ss_pred             ----CCcHHHHhhCCEEEEEeChHHHHHHHHHHH
Confidence                123455678999999988766666666554

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.55  E-value=0.093  Score=48.62  Aligned_cols=33  Identities=21%  Similarity=0.234  Sum_probs=30.7

Q ss_pred             HHcCCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q 020259           37 LQEYARILVVGAGG-LGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        37 Lr~~~~VliiG~gg-lG~evaknL~l~Gvg~itlvD   71 (328)
                      + +.++|+|+|.|+ +|..++..|...|. .+|+++
T Consensus       157 l-~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~  190 (283)
T PRK14192        157 L-AGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH  190 (283)
T ss_pred             C-CCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence            5 578999999999 99999999999998 999986

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.55  E-value=0.15  Score=46.92  Aligned_cols=33  Identities=27%  Similarity=0.605  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|-+|+.++..|+..|. +++++|.+.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~   36 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD   36 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence            579999999999999999999998 899998553

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.54  E-value=0.3  Score=50.39  Aligned_cols=84  Identities=15%  Similarity=0.226  Sum_probs=58.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      ..+|+|+|+|.+|..+++.|...|+ +++++|.|.-                   +++    .+++.  +.+  .+..+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~--g~~--v~~GDa  451 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIE----TLRKF--GMK--VFYGDA  451 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhc--CCe--EEEEeC
Confidence            4789999999999999999999998 7899997752                   232    22222  222  233333


Q ss_pred             CCc---chhhhccCCEEEecCCCHHHHHHHHHHHH
Q 020259          120 EDK---DISFYNDFNIIVLGLDSIEARSYINAVAC  151 (328)
Q Consensus       120 ~~~---~~~~~~~~dvVi~~~d~~~~~~~l~~~~~  151 (328)
                      .+.   ...-++++|+||.++++.+....+-..++
T Consensus       452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar  486 (621)
T PRK03562        452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVK  486 (621)
T ss_pred             CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHH
Confidence            322   22345689999999999887776666664

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.51  E-value=0.34  Score=43.43  Aligned_cols=82  Identities=17%  Similarity=0.237  Sum_probs=50.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gv---g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      +..+|.|||+|.+|..+++.|...|.   ..+.+++..                  ...|++.+++.    . .+++  .
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~------------------~~~~~~~~~~~----~-~~~~--~   57 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRS------------------NVEKLDQLQAR----Y-NVST--T   57 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCC------------------CHHHHHHHHHH----c-CcEE--e
Confidence            36789999999999999999998873   224443311                  01233322222    2 2221  1


Q ss_pred             ecccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                           ....+.++++|+|+.|+.+...+..+.++.
T Consensus        58 -----~~~~~~~~~~DiViiavp~~~~~~v~~~l~   87 (245)
T PRK07634         58 -----TDWKQHVTSVDTIVLAMPPSAHEELLAELS   87 (245)
T ss_pred             -----CChHHHHhcCCEEEEecCHHHHHHHHHHHH
Confidence                 123455688999999988766655555443

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.41  E-value=0.17  Score=46.60  Aligned_cols=31  Identities=29%  Similarity=0.322  Sum_probs=28.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +|.|||+|.+|..+++.|...|. +++++|.+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~   32 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRR   32 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence            69999999999999999999997 78888853

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.41  E-value=0.37  Score=47.23  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ...+|+|+|+|.+|..+++.|...|+ +++++|.|.
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp  245 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP  245 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence            58889999999999999999999999 799988554

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=94.40  E-value=0.12  Score=48.95  Aligned_cols=77  Identities=19%  Similarity=0.205  Sum_probs=50.5

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC-CCcEE
Q 020259           41 ARILVVGA-GGLGCELLKDLALSGF-K-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-SGVNI  112 (328)
Q Consensus        41 ~~VliiG~-gglG~evaknL~l~Gv-g-----~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln-p~v~v  112 (328)
                      .||.|||+ |.+|+.++-.|+..|+ +     +|.|+|-..                 .+.|++..+.-|+... |... 
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~-----------------~~~~a~g~a~Dl~~~~~~~~~-   65 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP-----------------AMKALEGVAMELEDCAFPLLA-   65 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC-----------------cccccchHHHHHhhccccccC-
Confidence            58999998 9999999999999988 4     688887221                 1223444455555544 3221 


Q ss_pred             EEEecccCCcchhhhccCCEEEecCC
Q 020259          113 VPHFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      ..   .+...+.+-++++|+||.+..
T Consensus        66 ~~---~i~~~~~~~~~daDvVVitAG   88 (323)
T TIGR01759        66 GV---VATTDPEEAFKDVDAALLVGA   88 (323)
T ss_pred             Cc---EEecChHHHhCCCCEEEEeCC
Confidence            00   122235677899999977644

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.38  E-value=0.15  Score=48.18  Aligned_cols=32  Identities=28%  Similarity=0.362  Sum_probs=28.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|.|||+|.+|+.++.+|+..|. +++++|.+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~   36 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR   36 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            479999999999999999999996 68898764

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.37  E-value=0.43  Score=44.01  Aligned_cols=80  Identities=9%  Similarity=0.229  Sum_probs=51.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           42 RILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv---g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +|.|||+|.+|..+++.|...|.   .++.+++.+.-                  .|.    +.+.+..+.+.+      
T Consensus         3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~----~~l~~~~~~~~~------   54 (277)
T PRK06928          3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHF----NQLYDKYPTVEL------   54 (277)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHH----HHHHHHcCCeEE------
Confidence            69999999999999999999983   46777664310                  121    122222233221      


Q ss_pred             cCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                       .....+..+++|+||.|+-.......+.++.
T Consensus        55 -~~~~~e~~~~aDvVilavpp~~~~~vl~~l~   85 (277)
T PRK06928         55 -ADNEAEIFTKCDHSFICVPPLAVLPLLKDCA   85 (277)
T ss_pred             -eCCHHHHHhhCCEEEEecCHHHHHHHHHHHH
Confidence             1123455678999999988766666665553

>PRK10537 voltage-gated potassium channel; Provisional

Probab=94.36  E-value=0.19  Score=48.80  Aligned_cols=93  Identities=16%  Similarity=0.111  Sum_probs=57.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCC---------C--C-----------hHHH
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV---------G--K-----------PKAE   97 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~di---------G--~-----------~Ka~   97 (328)
                      +.+|+|+|.|.+|.++++.|...|. .++++|.|.++.. ...++-+-..|.         |  +           ....
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~~-~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl  317 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEHR-LPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNA  317 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhhh-ccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHH
Confidence            6789999999999999999998887 7888888755322 111111111111         1  1           2233


Q ss_pred             HHHHHHHhhCCCcEEEEEecccCCcchhhh--ccCCEEEec
Q 020259           98 VAAKRVMERVSGVNIVPHFCRIEDKDISFY--NDFNIIVLG  136 (328)
Q Consensus        98 a~~~~l~~lnp~v~v~~~~~~~~~~~~~~~--~~~dvVi~~  136 (328)
                      .++..++++||++++.+...+-.  +.+.+  .++|.||..
T Consensus       318 ~ivL~ar~l~p~~kIIa~v~~~~--~~~~L~~~GaD~VIsp  356 (393)
T PRK10537        318 FVVLAAKEMSSDVKTVAAVNDSK--NLEKIKRVHPDMIFSP  356 (393)
T ss_pred             HHHHHHHHhCCCCcEEEEECCHH--HHHHHHhcCCCEEECH
Confidence            34456788899888777654422  23332  367887765

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=94.36  E-value=0.096  Score=49.07  Aligned_cols=31  Identities=39%  Similarity=0.630  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEe
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFK-NLEVID   71 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg-~itlvD   71 (328)
                      .||.|||+|.+|+.+|-.|+.-+++ .+.|+|
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiD   32 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLID   32 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEE
Confidence            3799999999999999999999999 999998

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.32  E-value=0.24  Score=48.60  Aligned_cols=86  Identities=20%  Similarity=0.304  Sum_probs=53.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ...+|+|+|+|.+|..+++.|...|. .++++|.+.                   .+.    +.+++..+++.+  ...+
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~-------------------~~~----~~~~~~~~~~~~--i~gd  283 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDP-------------------ERA----EELAEELPNTLV--LHGD  283 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHH----HHHHHHCCCCeE--EECC
Confidence            36889999999999999999999898 689998543                   111    222322233332  2222


Q ss_pred             cCCc---chhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          119 IEDK---DISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       119 ~~~~---~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      ..+.   ....++++|.||.++++......+...+
T Consensus       284 ~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~  318 (453)
T PRK09496        284 GTDQELLEEEGIDEADAFIALTNDDEANILSSLLA  318 (453)
T ss_pred             CCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHH
Confidence            2221   1234578999998887755544443444

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=94.30  E-value=0.33  Score=44.92  Aligned_cols=32  Identities=28%  Similarity=0.501  Sum_probs=28.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|.|||+|.+|..++++|+..|. +++++|.+
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~   34 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN   34 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            479999999999999999999997 68888754

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.27  E-value=0.37  Score=43.79  Aligned_cols=77  Identities=19%  Similarity=0.248  Sum_probs=46.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFK--NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg--~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      +|.|||+|.+|..+++.|...|..  .+.+.|.                   ...|++.++    +..+.+++.      
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r-------------------~~~~~~~l~----~~~~~~~~~------   52 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPR-------------------NAQIAARLA----ERFPKVRIA------   52 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECC-------------------CHHHHHHHH----HHcCCceEe------
Confidence            599999999999999999998852  2333331                   112333333    222333221      


Q ss_pred             CCcchhhhccCCEEEecCCCHHHHHHHHH
Q 020259          120 EDKDISFYNDFNIIVLGLDSIEARSYINA  148 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~  148 (328)
                       ....+..+++|+|+.|+.+......+..
T Consensus        53 -~~~~~~~~~aDvVilav~p~~~~~vl~~   80 (258)
T PRK06476         53 -KDNQAVVDRSDVVFLAVRPQIAEEVLRA   80 (258)
T ss_pred             -CCHHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence             2234556789999999886545444443

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.27  E-value=0.39  Score=44.18  Aligned_cols=81  Identities=15%  Similarity=0.272  Sum_probs=51.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv---g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      ..+|.+||+|.+|..++++|...|+   ..++++|...                  ..|++.+++    .. .+++.   
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~------------------~~~~~~l~~----~~-g~~~~---   56 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSN------------------ETRLQELHQ----KY-GVKGT---   56 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCC------------------HHHHHHHHH----hc-CceEe---
Confidence            4589999999999999999999983   2344433100                  012222222    11 23221   


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                          ....+..+++|+||.|+.+......+..+.
T Consensus        57 ----~~~~e~~~~aDvVilav~p~~~~~vl~~l~   86 (279)
T PRK07679         57 ----HNKKELLTDANILFLAMKPKDVAEALIPFK   86 (279)
T ss_pred             ----CCHHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence                123455678999999998877777676554

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.25  E-value=0.19  Score=48.23  Aligned_cols=90  Identities=12%  Similarity=0.193  Sum_probs=55.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC------CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh--hC----
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF------KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME--RV----  107 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv------g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~--ln----  107 (328)
                      ..+|.|+|+|+-|+.+|..|+..|.      .+++++..+..-              -++.    ..+.+++  .|    
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~--------------~~~~----~~~~in~~~~N~~yl   72 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIV--------------EGEK----LSDIINTKHENVKYL   72 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccc--------------cchH----HHHHHHhcCCCcccC
Confidence            4599999999999999999999883      467777533210              0111    1222222  11    


Q ss_pred             CCcEEEEEeccc--CCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          108 SGVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       108 p~v~v~~~~~~~--~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      |+++.   +..+  .....+.++++|+||.++.+...+..+.++.
T Consensus        73 p~~~L---p~ni~~tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~  114 (365)
T PTZ00345         73 PGIKL---PDNIVAVSDLKEAVEDADLLIFVIPHQFLESVLSQIK  114 (365)
T ss_pred             CCCcC---CCceEEecCHHHHHhcCCEEEEEcChHHHHHHHHHhc
Confidence            22221   1111  1223456789999999999877776666554

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=94.20  E-value=0.2  Score=48.26  Aligned_cols=32  Identities=34%  Similarity=0.688  Sum_probs=29.0

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|+||| +|.+|..+++.|...|. .++++|.+
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~  131 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD  131 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence            6799998 99999999999999996 69999864

>PRK06223 malate dehydrogenase; Reviewed

Probab=94.20  E-value=0.27  Score=45.92  Aligned_cols=32  Identities=31%  Similarity=0.597  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .||.|||+|.+|+.++..++..|.+++.|+|-
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~   34 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI   34 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence            48999999999999999999998669999985

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=94.18  E-value=0.22  Score=48.86  Aligned_cols=43  Identities=21%  Similarity=0.257  Sum_probs=36.7

Q ss_pred             CCCCCccHHHH----HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEE
Q 020259           24 GPTFEPGTELR----DDLQEYARILVVGAGGLGCELLKDLALSGFKNLE   68 (328)
Q Consensus        24 rq~~l~G~~~q----~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~it   68 (328)
                      +|-|+|+.+..    ..| ++++|+|||+|++|..-|.||--+|+ +++
T Consensus        17 ~~~r~~~r~ef~~~~~~L-kgKtIaIIGyGSqG~AqAlNLrdSGv-nVv   63 (487)
T PRK05225         17 GKCRFMDRDEFADGASYL-KGKKIVIVGCGAQGLNQGLNMRDSGL-DIS   63 (487)
T ss_pred             ccceecchhhccchhHHh-CCCEEEEEccCHHHHHHhCCCccccc-eeE
Confidence            45688887665    779 79999999999999999999999999 444

>PRK09242 tropinone reductase; Provisional

Probab=94.18  E-value=0.45  Score=42.69  Aligned_cols=81  Identities=15%  Similarity=0.282  Sum_probs=56.8

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++++++|.| .|++|.++++.|+..|. ++++++.+                   ..+.+.+.+.+...+|..++..+
T Consensus         7 ~-~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   65 (257)
T PRK09242          7 L-DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD-------------------ADALAQARDELAEEFPEREVHGL   65 (257)
T ss_pred             c-CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence            5 578899998 58999999999999997 68887632                   12455566667666677777777


Q ss_pred             ecccCCcc---------hhhhccCCEEEecCC
Q 020259          116 FCRIEDKD---------ISFYNDFNIIVLGLD  138 (328)
Q Consensus       116 ~~~~~~~~---------~~~~~~~dvVi~~~d  138 (328)
                      ..++.+..         .+.+.+.|+||.+..
T Consensus        66 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag   97 (257)
T PRK09242         66 AADVSDDEDRRAILDWVEDHWDGLHILVNNAG   97 (257)
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            66665421         122456788887753

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=94.13  E-value=0.2  Score=46.38  Aligned_cols=31  Identities=29%  Similarity=0.630  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ..+|-.||+|-.|+.+++||+.+|. ++|++|
T Consensus        35 ~~~iGFIGLG~MG~~M~~nLik~G~-kVtV~d   65 (327)
T KOG0409|consen   35 KTRIGFIGLGNMGSAMVSNLIKAGY-KVTVYD   65 (327)
T ss_pred             cceeeEEeeccchHHHHHHHHHcCC-EEEEEe
Confidence            6889999999999999999999998 799998

>PRK08251 short chain dehydrogenase; Provisional

Probab=94.12  E-value=0.49  Score=42.09  Aligned_cols=78  Identities=18%  Similarity=0.382  Sum_probs=53.1

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +.+++|.| .||+|.++++.|+..|. ++++++.+.                   .+.+.+.+.+.+.+|..++.....+
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D   61 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD   61 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence            56788987 89999999999999996 788876431                   2344555566666677777777666


Q ss_pred             cCCcc---------hhhhccCCEEEecC
Q 020259          119 IEDKD---------ISFYNDFNIIVLGL  137 (328)
Q Consensus       119 ~~~~~---------~~~~~~~dvVi~~~  137 (328)
                      +.+..         .+.+.+.|+||.+.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~id~vi~~a   89 (248)
T PRK08251         62 VNDHDQVFEVFAEFRDELGGLDRVIVNA   89 (248)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            65431         11234578777764

>PRK07062 short chain dehydrogenase; Provisional

Probab=94.12  E-value=0.44  Score=42.96  Aligned_cols=80  Identities=20%  Similarity=0.357  Sum_probs=54.0

Q ss_pred             HHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++..++|.|+ +|+|.++++.|+..|. ++.+++.+.                   .+.+.+.+.+.+..|..++...
T Consensus         6 l-~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~   64 (265)
T PRK07062          6 L-EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDE-------------------ERLASAEARLREKFPGARLLAA   64 (265)
T ss_pred             c-CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEE
Confidence            5 5778999984 7999999999999998 577776432                   2444555666666666666666


Q ss_pred             ecccCCcc---------hhhhccCCEEEecC
Q 020259          116 FCRIEDKD---------ISFYNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~---------~~~~~~~dvVi~~~  137 (328)
                      ..++.+..         .+.+...|++|.+.
T Consensus        65 ~~D~~~~~~v~~~~~~~~~~~g~id~li~~A   95 (265)
T PRK07062         65 RCDVLDEADVAAFAAAVEARFGGVDMLVNNA   95 (265)
T ss_pred             EecCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            65655421         11235678887764

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=94.10  E-value=0.6  Score=41.35  Aligned_cols=84  Identities=23%  Similarity=0.297  Sum_probs=51.2

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC--CcEEEEEecc
Q 020259           42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS--GVNIVPHFCR  118 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp--~v~v~~~~~~  118 (328)
                      +|.||| +|.+|+.+++.|+..| .++++++.+.                   .|++.+.+.......  ........  
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~-------------------~~~~~l~~~~~~~~~~~g~~~~~~~--   59 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDL-------------------EKAEEAAAKALEELGHGGSDIKVTG--   59 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCH-------------------HHHHHHHHHHHhhccccCCCceEEE--
Confidence            699997 8999999999999999 4787776321                   233333332221111  11111110  


Q ss_pred             cCCcchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSIEARSYINAV  149 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~  149 (328)
                        ....+..+++|+||.|+-.......+..+
T Consensus        60 --~~~~ea~~~aDvVilavp~~~~~~~l~~l   88 (219)
T TIGR01915        60 --ADNAEAAKRADVVILAVPWDHVLKTLESL   88 (219)
T ss_pred             --eChHHHHhcCCEEEEECCHHHHHHHHHHH
Confidence              12245577899999998876666555544

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PTZ00325 malate dehydrogenase; Provisional

Probab=94.08  E-value=0.16  Score=47.95  Aligned_cols=34  Identities=29%  Similarity=0.451  Sum_probs=29.5

Q ss_pred             cCCcEEEEcC-ChHHHHHHHHHHHhCCC-eEEEEeC
Q 020259           39 EYARILVVGA-GGLGCELLKDLALSGFK-NLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~-gglG~evaknL~l~Gvg-~itlvD~   72 (328)
                      +-.||+|+|+ |.+|+.++-.|+..|.. +|.|+|-
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            4569999998 99999999999977774 7999995

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=94.04  E-value=0.17  Score=46.22  Aligned_cols=72  Identities=24%  Similarity=0.385  Sum_probs=46.9

Q ss_pred             EEEEcC-ChHHHHHHHHHHHhC--C-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC---CCcEEEEE
Q 020259           43 ILVVGA-GGLGCELLKDLALSG--F-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV---SGVNIVPH  115 (328)
Q Consensus        43 VliiG~-gglG~evaknL~l~G--v-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln---p~v~v~~~  115 (328)
                      |.|||+ |.+|..++..|+..|  . .+|.|+|-+.                   .|++.....++...   +..+++. 
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~-------------------~~l~~~~~dl~~~~~~~~~~~i~~-   60 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE-------------------EKLKGVAMDLQDAVEPLADIKVSI-   60 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc-------------------ccchHHHHHHHHhhhhccCcEEEE-
Confidence            579999 999999999999998  4 5899998433                   12223333344432   2334433 


Q ss_pred             ecccCCcchhhhccCCEEEecCC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                          .+...+-++++|+||.+..
T Consensus        61 ----~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650          61 ----TDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             ----CCchHHHhCCCCEEEECCC
Confidence                1112566799999988653

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=94.01  E-value=0.25  Score=45.75  Aligned_cols=31  Identities=26%  Similarity=0.533  Sum_probs=27.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~   31 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIG   31 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            58999999999999999999997 78888754

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=93.99  E-value=0.34  Score=44.92  Aligned_cols=30  Identities=33%  Similarity=0.441  Sum_probs=27.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +|+|+|+|++|+.++..|+..|. .+++++.
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence            69999999999999999999996 6888874

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=93.97  E-value=0.56  Score=46.98  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|.+|+.+|.+|+.+|. .++++|.+.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~   37 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP   37 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            479999999999999999999998 799998643

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=93.94  E-value=0.46  Score=48.78  Aligned_cols=84  Identities=14%  Similarity=0.156  Sum_probs=57.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      +.+|+|+|.|.+|..+++.|...|+ +++++|.|.-                   +++    .+++.  +.+  ++..+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~--g~~--v~~GDa  451 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVN----LMRKY--GYK--VYYGDA  451 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhC--CCe--EEEeeC
Confidence            4789999999999999999999998 7899997651                   222    22332  222  233333


Q ss_pred             CCc---chhhhccCCEEEecCCCHHHHHHHHHHHH
Q 020259          120 EDK---DISFYNDFNIIVLGLDSIEARSYINAVAC  151 (328)
Q Consensus       120 ~~~---~~~~~~~~dvVi~~~d~~~~~~~l~~~~~  151 (328)
                      .+.   ...-++++|+||.++++.+....+-..++
T Consensus       452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r  486 (601)
T PRK03659        452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQ  486 (601)
T ss_pred             CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHH
Confidence            221   12335689999999998877666656663

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.85  E-value=0.49  Score=46.44  Aligned_cols=31  Identities=39%  Similarity=0.677  Sum_probs=27.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +|+|+|+|.+|..+++.|...|. .++++|.+
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~   32 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTD   32 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            69999999999999999999997 68888743

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.83  E-value=0.45  Score=44.77  Aligned_cols=32  Identities=19%  Similarity=0.424  Sum_probs=28.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +|.|+|+|++|+.++..|+.+|. ++++++.+.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~   33 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNH   33 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCH
Confidence            59999999999999999999995 688987543

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=93.81  E-value=0.31  Score=45.40  Aligned_cols=31  Identities=32%  Similarity=0.590  Sum_probs=28.1

Q ss_pred             EEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           43 ILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        43 VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      |.|||+|.+|+.++-.|+..|..+++++|-+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~   31 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence            5799999999999999999887699999965

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=93.71  E-value=0.39  Score=39.81  Aligned_cols=78  Identities=18%  Similarity=0.312  Sum_probs=52.8

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccC
Q 020259           42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE  120 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~  120 (328)
                      .|+|+| .+|+|.++++.|+..|-.++.++..+                 ....+.+.+.+.+.+.+  .++.....++.
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~D~~   62 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIECDLS   62 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEESETT
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--ccccccccccc
Confidence            578887 89999999999999998888887644                 11245666666677544  56666666654


Q ss_pred             Ccc---------hhhhccCCEEEecCC
Q 020259          121 DKD---------ISFYNDFNIIVLGLD  138 (328)
Q Consensus       121 ~~~---------~~~~~~~dvVi~~~d  138 (328)
                      +..         .+.+...|++|.+..
T Consensus        63 ~~~~~~~~~~~~~~~~~~ld~li~~ag   89 (167)
T PF00106_consen   63 DPESIRALIEEVIKRFGPLDILINNAG   89 (167)
T ss_dssp             SHHHHHHHHHHHHHHHSSESEEEEECS
T ss_pred             ccccccccccccccccccccccccccc
Confidence            421         123356788876643

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=93.67  E-value=0.57  Score=47.64  Aligned_cols=34  Identities=35%  Similarity=0.505  Sum_probs=30.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +.+|+|+|+|.+|.++++.|...|. .++++|.|.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~  450 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSR  450 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCH
Confidence            5899999999999999999999997 689999664

>PRK08818 prephenate dehydrogenase; Provisional

Probab=93.62  E-value=0.45  Score=45.83  Aligned_cols=34  Identities=21%  Similarity=0.083  Sum_probs=27.9

Q ss_pred             cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ...+|+|||+ |.+|..+++.|-...-.+|+.+|.
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~   37 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP   37 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence            4678999999 999999999999653336887875

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=93.62  E-value=0.25  Score=43.82  Aligned_cols=34  Identities=35%  Similarity=0.447  Sum_probs=29.2

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++.+|+|.| .|++|..+++.|...|. ++++++.+
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~   39 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC   39 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence            577899998 79999999999999997 67777644

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=93.61  E-value=0.12  Score=48.78  Aligned_cols=32  Identities=31%  Similarity=0.544  Sum_probs=28.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCC------eEEEEeC
Q 020259           41 ARILVVGA-GGLGCELLKDLALSGFK------NLEVIDM   72 (328)
Q Consensus        41 ~~VliiG~-gglG~evaknL~l~Gvg------~itlvD~   72 (328)
                      .||.|||+ |.+|+.+|-.|+..|+-      +|.|+|-
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di   41 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL   41 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence            58999999 99999999999998884      6999983

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=93.55  E-value=0.25  Score=49.30  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=29.8

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.+++|+|+||+|..+++.|+..|. +++++|.
T Consensus       331 ~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R  363 (477)
T PRK09310        331 NNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNR  363 (477)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46789999999999999999999998 8888763

>PLN02688 pyrroline-5-carboxylate reductase

Probab=93.55  E-value=0.38  Score=43.81  Aligned_cols=77  Identities=16%  Similarity=0.328  Sum_probs=48.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC---CeEEEE-eCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           42 RILVVGAGGLGCELLKDLALSGF---KNLEVI-DMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv---g~itlv-D~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +|.+||+|.+|..++++|...|.   ..|+++ |.                   ...|++    .+.+.  .+.+.    
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r-------------------~~~~~~----~~~~~--g~~~~----   52 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDS-------------------NPARRD----VFQSL--GVKTA----   52 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCC-------------------CHHHHH----HHHHc--CCEEe----
Confidence            69999999999999999999985   245554 21                   112322    22332  33321    


Q ss_pred             ccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          118 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                         ....+..+++|+||.|+.+......+..+.
T Consensus        53 ---~~~~e~~~~aDvVil~v~~~~~~~vl~~l~   82 (266)
T PLN02688         53 ---ASNTEVVKSSDVIILAVKPQVVKDVLTELR   82 (266)
T ss_pred             ---CChHHHHhcCCEEEEEECcHHHHHHHHHHH
Confidence               123455678999999997665666555543

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=93.54  E-value=0.51  Score=43.41  Aligned_cols=32  Identities=25%  Similarity=0.441  Sum_probs=24.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHh--CCCeEE-EEe
Q 020259           39 EYARILVVGAGGLGCELLKDLALS--GFKNLE-VID   71 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~--Gvg~it-lvD   71 (328)
                      +..+|.|||+|.+|..++++|...  |+ +++ ++|
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~-el~aV~d   39 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGL-TLSAVAV   39 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCe-EEEEEEC
Confidence            356899999999999999999863  44 343 445

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.53  E-value=0.14  Score=51.40  Aligned_cols=33  Identities=24%  Similarity=0.476  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      -.+|.|||+|..|+.+|.+|+.+|. .++++|.+
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~   37 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIR   37 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            4679999999999999999999998 79999854

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=93.52  E-value=0.3  Score=46.58  Aligned_cols=85  Identities=21%  Similarity=0.255  Sum_probs=47.7

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEE-EEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           42 RILVVGA-GGLGCELLKDLALSGFKNLE-VIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~Gvg~it-lvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      +|.|+|+ |.+|.++++.|...-.-++. +++.+.               ..|+.        +.+.+|.+.... ...+
T Consensus         2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~~-~~~~   57 (346)
T TIGR01850         2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKP--------VSEVHPHLRGLV-DLNL   57 (346)
T ss_pred             EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCC--------hHHhCccccccC-Ccee
Confidence            6999998 89999999999965333455 545332               12221        111223221100 0111


Q ss_pred             CC-cchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          120 ED-KDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       120 ~~-~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .+ ...++.+++|+|+.|+.+...+.+...+.
T Consensus        58 ~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~~   89 (346)
T TIGR01850        58 EPIDEEEIAEDADVVFLALPHGVSAELAPELL   89 (346)
T ss_pred             ecCCHHHhhcCCCEEEECCCchHHHHHHHHHH
Confidence            11 12344468999999998866666555543

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=93.49  E-value=0.46  Score=43.51  Aligned_cols=32  Identities=19%  Similarity=0.287  Sum_probs=24.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHhC--CCeEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSG--FKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~G--vg~itlvD~d   73 (328)
                      +|.|||+|.+|..+++.|...+  +.-+.++|.+
T Consensus         3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~   36 (265)
T PRK13304          3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRN   36 (265)
T ss_pred             EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence            6999999999999999998764  3334455543

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=93.43  E-value=0.24  Score=46.23  Aligned_cols=68  Identities=28%  Similarity=0.371  Sum_probs=47.9

Q ss_pred             EEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC----CcEEEEEeccc
Q 020259           45 VVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS----GVNIVPHFCRI  119 (328)
Q Consensus        45 iiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp----~v~v~~~~~~~  119 (328)
                      |||+|.+|+.+|-.|+..|+ ++|.|+|-                   .+.|++..+.-|+...+    .+++.      
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di-------------------~~~~~~g~a~Dl~~~~~~~~~~~~i~------   55 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDI-------------------NKDKAEGEAMDLQHAASFLPTPKKIR------   55 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCChhhHHHHHHHHhhcccCCCeEEe------
Confidence            68999999999999999998 46999983                   22345555666665432    23333      


Q ss_pred             CCcchhhhccCCEEEecCC
Q 020259          120 EDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d  138 (328)
                       ..+.+-++++|+||.+..
T Consensus        56 -~~~~~~~~daDivVitag   73 (299)
T TIGR01771        56 -SGDYSDCKDADLVVITAG   73 (299)
T ss_pred             -cCCHHHHCCCCEEEECCC
Confidence             124567899999987754

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=93.42  E-value=0.26  Score=46.34  Aligned_cols=75  Identities=17%  Similarity=0.241  Sum_probs=48.1

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           42 RILVVGA-GGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      +|.|||+ |.+|+.+|-.|+..|+ .+|.|+|-.                     |++..+--|+...+.+++.....  
T Consensus         2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~---------------------~a~g~alDL~~~~~~~~i~~~~~--   58 (310)
T cd01337           2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV---------------------NTPGVAADLSHINTPAKVTGYLG--   58 (310)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC---------------------ccceeehHhHhCCCcceEEEecC--
Confidence            7999999 9999999999999897 579999954                     11122222333323445543211  


Q ss_pred             CCcchhhhccCCEEEecCCC
Q 020259          120 EDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d~  139 (328)
                      ++...+-++++|+||.+...
T Consensus        59 ~~~~y~~~~daDivvitaG~   78 (310)
T cd01337          59 PEELKKALKGADVVVIPAGV   78 (310)
T ss_pred             CCchHHhcCCCCEEEEeCCC
Confidence            01124667899999776543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05875 short chain dehydrogenase; Provisional

Probab=93.39  E-value=0.47  Score=43.00  Aligned_cols=34  Identities=21%  Similarity=0.388  Sum_probs=29.6

Q ss_pred             HHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      | ++.+++|.|+ |++|.++++.|+..|. ++.+++.
T Consensus         5 ~-~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r   39 (276)
T PRK05875          5 F-QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGR   39 (276)
T ss_pred             C-CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeC
Confidence            6 5789999995 8999999999999998 6888764

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.33  E-value=0.13  Score=45.10  Aligned_cols=35  Identities=34%  Similarity=0.475  Sum_probs=31.4

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | +.++|+|+|+|.+|..+++.|...|. ++++.|.+
T Consensus        26 l-~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~   60 (200)
T cd01075          26 L-EGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN   60 (200)
T ss_pred             C-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            6 58899999999999999999999998 78888754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=93.29  E-value=0.52  Score=43.69  Aligned_cols=33  Identities=21%  Similarity=0.416  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.+||+|..|..+|+||..+|. .++++|.+.
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~   33 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTP   33 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCC-EEEEEeCCh
Confidence            379999999999999999999997 799988554

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=93.27  E-value=0.55  Score=47.79  Aligned_cols=35  Identities=20%  Similarity=0.322  Sum_probs=31.3

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ...+|+|||+|..|-..|..|.+.|. +++++|...
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~  170 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP  170 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            47899999999999999999999998 699998554

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=93.24  E-value=0.34  Score=45.05  Aligned_cols=33  Identities=30%  Similarity=0.581  Sum_probs=29.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|.+|..++.+|+..|. +++++|.+.
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~   34 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNP   34 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            379999999999999999999996 789988543

>PRK08655 prephenate dehydrogenase; Provisional

Probab=93.24  E-value=0.76  Score=45.30  Aligned_cols=31  Identities=35%  Similarity=0.582  Sum_probs=27.1

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +|+||| +|++|..+++.|...|. +++++|.+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~   33 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD   33 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            689997 89999999999999996 78888743

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=93.23  E-value=0.76  Score=43.80  Aligned_cols=88  Identities=13%  Similarity=0.171  Sum_probs=53.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-------CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh--C----C
Q 020259           42 RILVVGAGGLGCELLKDLALSGF-------KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER--V----S  108 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv-------g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l--n----p  108 (328)
                      +|.|||+|+.|+.+|..|+..|.       .+++++..+.               ++-..   ...+.+++.  |    |
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~~~~---~~~~~in~~~~n~~ylp   62 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EIEGR---NLTEIINTTHENVKYLP   62 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------ccCCH---HHHHHHHhcCCCccccC
Confidence            58999999999999999999882       4788876422               11000   112222221  1    1


Q ss_pred             CcEEEEEeccc--CCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          109 GVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       109 ~v~v~~~~~~~--~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .++   .+..+  .....+.++++|+||.++.+...+..+.++.
T Consensus        63 gi~---Lp~~i~at~dl~eal~~ADiIIlAVPs~~i~~vl~~l~  103 (342)
T TIGR03376        63 GIK---LPANLVAVPDLVEAAKGADILVFVIPHQFLEGICKQLK  103 (342)
T ss_pred             CCc---CCCCeEEECCHHHHHhcCCEEEEECChHHHHHHHHHHH
Confidence            211   01111  1223566789999999999877776666654

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK06046 alanine dehydrogenase; Validated

Probab=93.22  E-value=0.58  Score=44.24  Aligned_cols=74  Identities=20%  Similarity=0.231  Sum_probs=52.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~-l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..+|.|||+|..|...+++|. ..++..+.++|.+.                   .+++.+++++++.. .+++....  
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~-------------------~~~~~~~~~~~~~~-~~~v~~~~--  186 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK-------------------SSAEKFVERMSSVV-GCDVTVAE--  186 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH-------------------HHHHHHHHHHHhhc-CceEEEeC--
Confidence            577999999999999999998 45788888887332                   56777777776543 23443322  


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                         ..++.+. +|+|+.|+.+
T Consensus       187 ---~~~~~l~-aDiVv~aTps  203 (326)
T PRK06046        187 ---DIEEACD-CDILVTTTPS  203 (326)
T ss_pred             ---CHHHHhh-CCEEEEecCC
Confidence               2234455 9999999876

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.22  E-value=0.5  Score=44.91  Aligned_cols=92  Identities=15%  Similarity=0.163  Sum_probs=52.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      ..+|.|+|+|.+|+.++..|+..|  .++++..+.-....++..- ......+..         ..+.+.+.+       
T Consensus         7 ~mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~-~~~~~l~~~---------~~l~~~i~~-------   67 (341)
T PRK12439          7 EPKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNH-RNSRYLGND---------VVLSDTLRA-------   67 (341)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcC-CCcccCCCC---------cccCCCeEE-------
Confidence            467999999999999999999998  4666654332211111110 000011100         001111111       


Q ss_pred             CCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          120 EDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .....+.++++|+||.|+.+...+..+.++.
T Consensus        68 t~d~~~a~~~aDlVilavps~~~~~vl~~i~   98 (341)
T PRK12439         68 TTDFAEAANCADVVVMGVPSHGFRGVLTELA   98 (341)
T ss_pred             ECCHHHHHhcCCEEEEEeCHHHHHHHHHHHH
Confidence            1122345688999999999877777666665

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=93.10  E-value=0.42  Score=46.86  Aligned_cols=84  Identities=17%  Similarity=0.240  Sum_probs=54.3

Q ss_pred             cEEEEcCChHHH-HHHHHHHH----hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           42 RILVVGAGGLGC-ELLKDLAL----SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        42 ~VliiG~gglG~-evaknL~l----~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      ||.|||+|+.-+ ++++.|+.    .++++|+|+|-|.  +..+..            =...+.+.+.+.++.++++..+
T Consensus         2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~   67 (419)
T cd05296           2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT   67 (419)
T ss_pred             EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence            799999999865 67777776    5668999999664  222211            0223344455566677766643


Q ss_pred             cccCCcchhhhccCCEEEec--CCCHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLG--LDSIEARS  144 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~--~d~~~~~~  144 (328)
                      .     ..+-++++|+||.+  ....+.|.
T Consensus        68 d-----~~~al~gadfVi~~~~vg~~~~r~   92 (419)
T cd05296          68 D-----RREALEGADFVFTQIRVGGLEARA   92 (419)
T ss_pred             C-----HHHHhCCCCEEEEEEeeCCcchhh
Confidence            2     46678899999888  33444443

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=93.09  E-value=0.31  Score=45.44  Aligned_cols=32  Identities=19%  Similarity=0.440  Sum_probs=28.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +|.+||+|.+|..++++|...|. +++++|.+.
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~   33 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQ   33 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            59999999999999999999997 688888653

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=93.06  E-value=0.88  Score=41.70  Aligned_cols=78  Identities=27%  Similarity=0.438  Sum_probs=59.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +..+++|-| .+|+|.|+|+.|+.-|. ++.|+-               +    .+.|-+.+++.|+... .+++...+.
T Consensus         5 ~~~~~lITGASsGIG~~~A~~lA~~g~-~liLva---------------R----~~~kL~~la~~l~~~~-~v~v~vi~~   63 (265)
T COG0300           5 KGKTALITGASSGIGAELAKQLARRGY-NLILVA---------------R----REDKLEALAKELEDKT-GVEVEVIPA   63 (265)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEe---------------C----cHHHHHHHHHHHHHhh-CceEEEEEC
Confidence            467899999 68999999999999998 788863               2    2358888999999877 788888888


Q ss_pred             ccCCcc------hhhh---ccCCEEEecC
Q 020259          118 RIEDKD------ISFY---NDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~------~~~~---~~~dvVi~~~  137 (328)
                      ++.+.+      .+..   -..|++|++.
T Consensus        64 DLs~~~~~~~l~~~l~~~~~~IdvLVNNA   92 (265)
T COG0300          64 DLSDPEALERLEDELKERGGPIDVLVNNA   92 (265)
T ss_pred             cCCChhHHHHHHHHHHhcCCcccEEEECC
Confidence            876532      1111   2578888763

>PLN00106 malate dehydrogenase

Probab=93.04  E-value=0.29  Score=46.26  Aligned_cols=35  Identities=26%  Similarity=0.460  Sum_probs=31.0

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCc
Q 020259           40 YARILVVGA-GGLGCELLKDLALSGF-KNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~-gglG~evaknL~l~Gv-g~itlvD~d~   74 (328)
                      ..||+|+|+ |.+|+.++-.|+..|. ..|.|+|-+.
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~   54 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN   54 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            578999999 9999999999998888 5799999544

>PRK07574 formate dehydrogenase; Provisional

Probab=93.01  E-value=0.47  Score=45.97  Aligned_cols=82  Identities=23%  Similarity=0.233  Sum_probs=54.4

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      ..| ..++|.|||+|.+|.++|+.|...|+ ++..+|.....                   .+    ...+.  .+  +.
T Consensus       188 ~~L-~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~-------------------~~----~~~~~--g~--~~  238 (385)
T PRK07574        188 YDL-EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLP-------------------EE----VEQEL--GL--TY  238 (385)
T ss_pred             eec-CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCc-------------------hh----hHhhc--Cc--ee
Confidence            458 69999999999999999999999998 67777742210                   00    00111  11  11


Q ss_pred             EecccCCcchhhhccCCEEEecC-CCHHHHHHHHHHH
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGL-DSIEARSYINAVA  150 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~-d~~~~~~~l~~~~  150 (328)
                           ....++.++.+|+|+.++ .+.+++..+++..
T Consensus       239 -----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~  270 (385)
T PRK07574        239 -----HVSFDSLVSVCDVVTIHCPLHPETEHLFDADV  270 (385)
T ss_pred             -----cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHH
Confidence                 112457788999997774 4667777777644

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=93.00  E-value=0.13  Score=46.74  Aligned_cols=39  Identities=28%  Similarity=0.471  Sum_probs=33.4

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHh----CC------CeEEEEeCCc
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALS----GF------KNLEVIDMDR   74 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~----Gv------g~itlvD~d~   74 (328)
                      ++| ++.||+++|+|+.|.-+++.|+.+    |+      ++|.++|.+=
T Consensus        21 ~~l-~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~G   69 (255)
T PF03949_consen   21 KKL-SDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKG   69 (255)
T ss_dssp             S-G-GG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTE
T ss_pred             CCH-HHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccc
Confidence            458 799999999999999999999999    99      8999999764

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.00  E-value=0.35  Score=44.80  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=30.8

Q ss_pred             HHHcCCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAGG-LGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~gg-lG~evaknL~l~Gvg~itlvD~   72 (328)
                      .| +.++|+|||.|. +|..+++.|...|. .+|+++.
T Consensus       155 ~l-~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s  190 (286)
T PRK14175        155 DL-EGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHS  190 (286)
T ss_pred             CC-CCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeC
Confidence            37 689999999998 99999999999996 7888863

>PRK07831 short chain dehydrogenase; Provisional

Probab=92.95  E-value=0.87  Score=40.94  Aligned_cols=32  Identities=25%  Similarity=0.367  Sum_probs=27.5

Q ss_pred             cCCcEEEEcC-C-hHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVGA-G-GLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG~-g-glG~evaknL~l~Gvg~itlvD   71 (328)
                      ++.+++|.|. | |+|..+++.|+..|. ++.++|
T Consensus        16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~   49 (262)
T PRK07831         16 AGKVVLVTAAAGTGIGSATARRALEEGA-RVVISD   49 (262)
T ss_pred             CCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEe
Confidence            5788999996 5 799999999999998 577765

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=92.94  E-value=0.16  Score=43.72  Aligned_cols=33  Identities=24%  Similarity=0.484  Sum_probs=28.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      +|.|||+|.+|..+|-.++++|. +++++|.+.-
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChH
Confidence            68999999999999999999998 8999997553

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=92.92  E-value=0.81  Score=43.64  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=31.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|+|+|.+|--.+..+.+.|.+.|.++|.+.
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~  203 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP  203 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence            34799999999999999999999999999998443

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=92.92  E-value=0.93  Score=42.74  Aligned_cols=34  Identities=24%  Similarity=0.515  Sum_probs=29.9

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ...+|+|+|+|++|..++..+...|..++.++|.
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~  202 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV  202 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence            3678999999999999999999999988888764

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=92.90  E-value=0.17  Score=43.33  Aligned_cols=38  Identities=18%  Similarity=0.292  Sum_probs=32.2

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..| .+++|.|+|+|.+|.++|+-|...|. ++..+|...
T Consensus        32 ~~l-~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~   69 (178)
T PF02826_consen   32 REL-RGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSP   69 (178)
T ss_dssp             S-S-TTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSC
T ss_pred             ccc-CCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccC
Confidence            467 59999999999999999999999999 899888544

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=92.84  E-value=0.78  Score=44.73  Aligned_cols=40  Identities=35%  Similarity=0.510  Sum_probs=32.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCcc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNR   82 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r   82 (328)
                      +|.|||+|-+|..+|.+|+..|. +++.+|.+.-....+..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~   41 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNK   41 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhc
Confidence            69999999999999999999998 79999976544444443

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=92.83  E-value=0.15  Score=51.34  Aligned_cols=33  Identities=27%  Similarity=0.475  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|..|+.+|.+|+.+|+ .++++|.+.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~   40 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARA   40 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            679999999999999999999998 799998543

>cd00704 MDH Malate dehydrogenase

Probab=92.81  E-value=0.15  Score=48.29  Aligned_cols=33  Identities=30%  Similarity=0.526  Sum_probs=28.9

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCe------EEEEeCC
Q 020259           41 ARILVVGA-GGLGCELLKDLALSGFKN------LEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~-gglG~evaknL~l~Gvg~------itlvD~d   73 (328)
                      .||+|+|+ |.+|+.++..|+..|+-.      |.|+|-.
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~   40 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP   40 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence            37999999 999999999999988854      9999854

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=92.81  E-value=0.43  Score=44.69  Aligned_cols=32  Identities=31%  Similarity=0.454  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .+|.|||+|-+|+.+|-.|+..|.++++++|-
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi   33 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV   33 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            47999999999999999999999878999995

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.80  E-value=0.67  Score=48.07  Aligned_cols=34  Identities=29%  Similarity=0.412  Sum_probs=31.0

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...+|+|||+|..|-..|..|.+.|. +++++|.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~  359 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRH  359 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            47899999999999999999999998 59999864

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.78  E-value=0.17  Score=45.05  Aligned_cols=38  Identities=42%  Similarity=0.438  Sum_probs=34.4

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .| +..+|+|.|.|.+|..+|+.|...|...+.+.|.+-
T Consensus        20 ~l-~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          20 SL-EGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             Cc-CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            46 689999999999999999999999998999998654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>TIGR00936 ahcY adenosylhomocysteinase

Probab=92.78  E-value=1.1  Score=43.68  Aligned_cols=35  Identities=20%  Similarity=0.185  Sum_probs=31.3

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ...+|+|+|+|.+|..+++.+...|. +++++|.|.
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp  228 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP  228 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence            58899999999999999999999998 688888554

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=92.76  E-value=1.1  Score=40.06  Aligned_cols=33  Identities=30%  Similarity=0.495  Sum_probs=27.7

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +.+|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~   35 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN   35 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            46789998 57999999999999997 78888743

>PLN03139 formate dehydrogenase; Provisional

Probab=92.73  E-value=0.58  Score=45.32  Aligned_cols=82  Identities=26%  Similarity=0.268  Sum_probs=53.9

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      ..| ..++|.|||+|.+|..+|+.|...|+ ++..+|.....                   .+.    ..+.  .+  ..
T Consensus       195 ~~L-~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~-------------------~~~----~~~~--g~--~~  245 (386)
T PLN03139        195 YDL-EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMD-------------------PEL----EKET--GA--KF  245 (386)
T ss_pred             cCC-CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcc-------------------hhh----Hhhc--Cc--ee
Confidence            458 69999999999999999999999998 57777743210                   000    0111  11  11


Q ss_pred             EecccCCcchhhhccCCEEEec-CCCHHHHHHHHHHH
Q 020259          115 HFCRIEDKDISFYNDFNIIVLG-LDSIEARSYINAVA  150 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~-~d~~~~~~~l~~~~  150 (328)
                           .+.-++.++++|+|+.+ -.+.+++..++...
T Consensus       246 -----~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~  277 (386)
T PLN03139        246 -----EEDLDAMLPKCDVVVINTPLTEKTRGMFNKER  277 (386)
T ss_pred             -----cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHH
Confidence                 11245677889999766 44667777777644

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.68  E-value=0.78  Score=45.23  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ++|+|+|+|+.|..+|+.|...|. ++++.|...
T Consensus         1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~   33 (459)
T PRK02705          1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRND   33 (459)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            479999999999999999999998 789988543

>PRK07576 short chain dehydrogenase; Provisional

Probab=92.67  E-value=0.34  Score=43.89  Aligned_cols=37  Identities=24%  Similarity=0.386  Sum_probs=30.9

Q ss_pred             HHHHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .++ ++.+++|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus         5 ~~~-~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~   42 (264)
T PRK07576          5 FDF-AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRS   42 (264)
T ss_pred             ccC-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            356 6889999985 8999999999999997 58887744

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=92.67  E-value=0.71  Score=42.94  Aligned_cols=33  Identities=27%  Similarity=0.225  Sum_probs=28.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ..+|+|+|+|++|...+..+...|...+.++|.
T Consensus       145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~  177 (308)
T TIGR01202       145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET  177 (308)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence            568999999999999998888899987877763

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=92.66  E-value=0.48  Score=44.82  Aligned_cols=97  Identities=21%  Similarity=0.214  Sum_probs=61.3

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      .| ..++|.|||+|.+|+++++-|...|+ ++..+|+-.-.+                 ++        ... .  +   
T Consensus       139 el-~gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~~~~~~-----------------~~--------~~~-~--~---  185 (324)
T COG0111         139 EL-AGKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDPYSPRE-----------------RA--------GVD-G--V---  185 (324)
T ss_pred             cc-cCCEEEEECCCHHHHHHHHHHHhCCC-eEEEECCCCchh-----------------hh--------ccc-c--c---
Confidence            57 59999999999999999999999999 688887422110                 00        000 0  0   


Q ss_pred             ecccCCcchhhhccCCEEEecCC-CHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG  177 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G  177 (328)
                        .-.+.-+++++++|+|+..+. +.+++..++......          -+.+.-+|.++-.+
T Consensus       186 --~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~----------MK~gailIN~aRG~  236 (324)
T COG0111         186 --VGVDSLDELLAEADILTLHLPLTPETRGLINAEELAK----------MKPGAILINAARGG  236 (324)
T ss_pred             --eecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhh----------CCCCeEEEECCCcc
Confidence              001123567788998877644 567777777655332          13455667665433

>PRK00811 spermidine synthase; Provisional

Probab=92.64  E-value=0.96  Score=41.87  Aligned_cols=34  Identities=24%  Similarity=0.544  Sum_probs=23.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+||++|+|+ |.-....|...++.+++.+|-|.
T Consensus        77 p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~  110 (283)
T PRK00811         77 PKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE  110 (283)
T ss_pred             CCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence            56899999885 33333334446899999998554

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=92.60  E-value=0.41  Score=46.33  Aligned_cols=77  Identities=19%  Similarity=0.182  Sum_probs=53.5

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCe------EEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC-CCcE-
Q 020259           41 ARILVVGA-GGLGCELLKDLALSGFKN------LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-SGVN-  111 (328)
Q Consensus        41 ~~VliiG~-gglG~evaknL~l~Gvg~------itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln-p~v~-  111 (328)
                      .||.|||+ |.+|+.+|-.|+..|+-.      |+|+|-                 |+.+.|++..+--|+... |... 
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~di-----------------D~~~~~a~g~a~DL~d~a~~~~~~  107 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGS-----------------ERSKEALEGVAMELEDSLYPLLRE  107 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEecc-----------------CccchhhhHHHHHHHHhhhhhcCc
Confidence            58999999 999999999999999943      555542                 345566777776666654 4321 


Q ss_pred             EEEEecccCCcchhhhccCCEEEecCCC
Q 020259          112 IVPHFCRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       112 v~~~~~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      +.     +...+.+-++++|+||.+...
T Consensus       108 v~-----i~~~~y~~~kdaDIVVitAG~  130 (387)
T TIGR01757       108 VS-----IGIDPYEVFEDADWALLIGAK  130 (387)
T ss_pred             eE-----EecCCHHHhCCCCEEEECCCC
Confidence            21     122356778999999887543

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK06199 ornithine cyclodeaminase; Validated

Probab=92.58  E-value=0.97  Score=43.72  Aligned_cols=76  Identities=14%  Similarity=0.182  Sum_probs=58.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHh--CCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCc-EEEEEe
Q 020259           40 YARILVVGAGGLGCELLKDLALS--GFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV-NIVPHF  116 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~--Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v-~v~~~~  116 (328)
                      ..++.|+|+|..+-.-++.++..  ++.++.++|.+                   ..|+++.++++++..+++ ++... 
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~-------------------~~~a~~f~~~~~~~~~~~~~v~~~-  214 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRG-------------------QKSLDSFATWVAETYPQITNVEVV-  214 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcCCCceEEEe-
Confidence            46899999999999999988763  58899998632                   368888899998876654 35442 


Q ss_pred             cccCCcchhhhccCCEEEecCCC
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                          +..++.+.++|+|++|+.+
T Consensus       215 ----~s~~eav~~ADIVvtaT~s  233 (379)
T PRK06199        215 ----DSIEEVVRGSDIVTYCNSG  233 (379)
T ss_pred             ----CCHHHHHcCCCEEEEccCC
Confidence                2356778999999998764

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=92.58  E-value=0.37  Score=43.21  Aligned_cols=38  Identities=32%  Similarity=0.362  Sum_probs=32.8

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..| +..+|+|.|.|.+|..+++.|...|..-+.+.|.+
T Consensus        27 ~~l-~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~   64 (227)
T cd01076          27 IGL-AGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD   64 (227)
T ss_pred             CCc-cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            347 68999999999999999999999998666688864

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=92.54  E-value=0.75  Score=43.48  Aligned_cols=74  Identities=18%  Similarity=0.135  Sum_probs=52.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..++.|||+|..|...++.|.. ..+.++.++|                   ....|++..++++++..  +++...   
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~-------------------r~~~~~~~~~~~~~~~g--~~v~~~---  183 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYC-------------------RTPSTREKFALRASDYE--VPVRAA---  183 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEC-------------------CCHHHHHHHHHHHHhhC--CcEEEe---
Confidence            4789999999999998777654 3456777765                   33467888888887653  233332   


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                        ....+.++++|+|+.|+.+
T Consensus       184 --~~~~eav~~aDiVitaT~s  202 (325)
T TIGR02371       184 --TDPREAVEGCDILVTTTPS  202 (325)
T ss_pred             --CCHHHHhccCCEEEEecCC
Confidence              2346677899999999865

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK05442 malate dehydrogenase; Provisional

Probab=92.54  E-value=0.49  Score=44.78  Aligned_cols=33  Identities=30%  Similarity=0.525  Sum_probs=28.8

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeC
Q 020259           40 YARILVVGA-GGLGCELLKDLALSGF-K-----NLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~-gglG~evaknL~l~Gv-g-----~itlvD~   72 (328)
                      -.||.|||+ |.+|+.+|-.|+..|+ +     +|.|+|-
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi   43 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI   43 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence            358999998 9999999999998888 4     6999883

>PLN02780 ketoreductase/ oxidoreductase

Probab=92.49  E-value=1.1  Score=42.16  Aligned_cols=62  Identities=21%  Similarity=0.264  Sum_probs=44.4

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      .++.++|.| .||+|.++|+.|+..|. ++.+++.+.                   .+.+.+++.+++.++..++.....
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~~~  111 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIKTVVV  111 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEEEEEE
Confidence            367888888 58999999999999998 688876321                   355666677776666556655554


Q ss_pred             ccC
Q 020259          118 RIE  120 (328)
Q Consensus       118 ~~~  120 (328)
                      ++.
T Consensus       112 Dl~  114 (320)
T PLN02780        112 DFS  114 (320)
T ss_pred             ECC
Confidence            443

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=92.48  E-value=0.86  Score=41.53  Aligned_cols=33  Identities=24%  Similarity=0.503  Sum_probs=24.9

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHh-CCCeEEEEeCC
Q 020259           41 ARILVVGA-GGLGCELLKDLALS-GFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~-gglG~evaknL~l~-Gvg~itlvD~d   73 (328)
                      -+|.|+|+ |.+|..+++.+... ++.-..++|.+
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~   36 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRP   36 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            37999999 99999999988763 55444556644

>PRK06545 prephenate dehydrogenase; Validated

Probab=92.47  E-value=0.63  Score=44.59  Aligned_cols=32  Identities=28%  Similarity=0.473  Sum_probs=27.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|.|||+|.+|..+++.|...|. .+.++|.+
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~   32 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYD   32 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeC
Confidence            369999999999999999999997 67777743

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.42  E-value=0.58  Score=41.48  Aligned_cols=34  Identities=32%  Similarity=0.545  Sum_probs=29.4

Q ss_pred             cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++.+++|.|+ |++|..+++.|...|. ++.++|.+
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~   38 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLN   38 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4788999996 9999999999999997 68888743

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=92.41  E-value=0.81  Score=41.71  Aligned_cols=73  Identities=18%  Similarity=0.207  Sum_probs=49.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv---g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      +.+|.|||+|.+|+.+++.|...|.   .++.+.|.+.-.              .+                   +..  
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~--------------~~-------------------~~~--   47 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN--------------TP-------------------FVY--   47 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc--------------CC-------------------eEE--
Confidence            4679999999999999999999884   236666543200              00                   011  


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                         ...+.+..+++|+||.|+.+...+..+.++.
T Consensus        48 ---~~~~~~~~~~~D~Vilavkp~~~~~vl~~i~   78 (260)
T PTZ00431         48 ---LQSNEELAKTCDIIVLAVKPDLAGKVLLEIK   78 (260)
T ss_pred             ---eCChHHHHHhCCEEEEEeCHHHHHHHHHHHH
Confidence               1123445678999999988777776666654

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=92.38  E-value=0.25  Score=46.28  Aligned_cols=32  Identities=28%  Similarity=0.637  Sum_probs=29.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|.|||+|-.|+-+|..++.+|+ .+++.|..
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~   35 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDIS   35 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCC
Confidence            689999999999999999999777 79999965

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=92.37  E-value=0.84  Score=40.66  Aligned_cols=32  Identities=34%  Similarity=0.585  Sum_probs=23.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHhC---CCeEEEEeCCc
Q 020259           42 RILVVGAGGLGCELLKDLALSG---FKNLEVIDMDR   74 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~G---vg~itlvD~d~   74 (328)
                      +|.+||||++|..+++.+- -|   +.-+.+.|.+.
T Consensus         2 ~vgiVGcGaIG~~l~e~v~-~~~~~~e~v~v~D~~~   36 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVR-DGRVDFELVAVYDRDE   36 (255)
T ss_pred             eEEEEeccHHHHHHHHHHh-cCCcceeEEEEecCCH
Confidence            6899999999999998665 44   55555556444

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=92.35  E-value=1  Score=42.45  Aligned_cols=88  Identities=23%  Similarity=0.283  Sum_probs=54.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc-
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI-  119 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~-  119 (328)
                      .+|.|+|+|+-|+.+|+-|+..| ..++++..+.-...+++..- -+                .+.-|++.   .+..+ 
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~-~N----------------~~yLp~i~---lp~~l~   60 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETR-EN----------------PKYLPGIL---LPPNLK   60 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcC-cC----------------ccccCCcc---CCcccc
Confidence            57999999999999999999999 57888764432222221110 00                00112211   11111 


Q ss_pred             -CCcchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259          120 -EDKDISFYNDFNIIVLGLDSIEARSYINAV  149 (328)
Q Consensus       120 -~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~  149 (328)
                       ...-.+.++++|+|+.++.+...+..+..+
T Consensus        61 at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l   91 (329)
T COG0240          61 ATTDLAEALDGADIIVIAVPSQALREVLRQL   91 (329)
T ss_pred             cccCHHHHHhcCCEEEEECChHHHHHHHHHH
Confidence             222356677899999999987777766665

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=92.33  E-value=0.38  Score=43.22  Aligned_cols=113  Identities=22%  Similarity=0.258  Sum_probs=69.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE--Eecc-
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP--HFCR-  118 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~--~~~~-  118 (328)
                      ++-+||+|-.|..++++|...|. .+..+|-+.-....+...        |-.-+..+-+.++++-+- ++.+  .+.. 
T Consensus         2 ~iGmiGLGrMG~n~v~rl~~~gh-dvV~yD~n~~av~~~~~~--------ga~~a~sl~el~~~L~~p-r~vWlMvPag~   71 (300)
T COG1023           2 QIGMIGLGRMGANLVRRLLDGGH-DVVGYDVNQTAVEELKDE--------GATGAASLDELVAKLSAP-RIVWLMVPAGD   71 (300)
T ss_pred             cceeeccchhhHHHHHHHHhCCC-eEEEEcCCHHHHHHHHhc--------CCccccCHHHHHHhcCCC-cEEEEEccCCC
Confidence            47799999999999999999997 688888665444433332        211233345555555433 3322  2222 


Q ss_pred             cCCc----chhhhccCCEEEecCCC-HHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259          119 IEDK----DISFYNDFNIIVLGLDS-IEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG  177 (328)
Q Consensus       119 ~~~~----~~~~~~~~dvVi~~~d~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G  177 (328)
                      +.+.    -...++.-|+||+...+ .+....-.+..             .++++-|++++++|
T Consensus        72 it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l-------------~~kgi~flD~GTSG  122 (300)
T COG1023          72 ITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLL-------------AEKGIHFLDVGTSG  122 (300)
T ss_pred             chHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHH-------------HhcCCeEEeccCCC
Confidence            3322    24567888999998543 33222222233             47899999999986

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=92.31  E-value=2.2  Score=43.37  Aligned_cols=80  Identities=16%  Similarity=0.241  Sum_probs=48.8

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC-------CCc
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-------SGV  110 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln-------p~v  110 (328)
                      +...|+|.| .|++|..+++.|+..|. ++++++.+.                   .|++.+.+.+.++.       +..
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga~~~~  138 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGTQPVE  138 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhccccccccccC
Confidence            355688888 59999999999999997 676654321                   23333333332211       112


Q ss_pred             EEEEEecccCCcc--hhhhccCCEEEecCC
Q 020259          111 NIVPHFCRIEDKD--ISFYNDFNIIVLGLD  138 (328)
Q Consensus       111 ~v~~~~~~~~~~~--~~~~~~~dvVi~~~d  138 (328)
                      ++..+..++.+..  ...+.+.|+||.+..
T Consensus       139 ~v~iV~gDLtD~esI~~aLggiDiVVn~AG  168 (576)
T PLN03209        139 KLEIVECDLEKPDQIGPALGNASVVICCIG  168 (576)
T ss_pred             ceEEEEecCCCHHHHHHHhcCCCEEEEccc
Confidence            3455555555422  345788999988754

>PLN02852 ferredoxin-NADP+ reductase

Probab=92.29  E-value=0.96  Score=45.29  Aligned_cols=43  Identities=26%  Similarity=0.287  Sum_probs=34.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHH--hCCCeEEEEeCCccCccCCccc
Q 020259           39 EYARILVVGAGGLGCELLKDLAL--SGFKNLEVIDMDRIEVSNLNRQ   83 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l--~Gvg~itlvD~d~v~~~nl~r~   83 (328)
                      ...+|+|||.|.-|.+.|..|+.  .|. +++|+|.... +--+.|.
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~-pgGlvr~   69 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPT-PFGLVRS   69 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCC-CcceEee
Confidence            36789999999999999999997  576 8999997763 3444443

>PRK07814 short chain dehydrogenase; Provisional

Probab=92.21  E-value=0.85  Score=41.15  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=29.5

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      + ++.+++|.| .|++|.++++.|+..|. ++.+++.+
T Consensus         8 ~-~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~   43 (263)
T PRK07814          8 L-DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART   43 (263)
T ss_pred             C-CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5 578899998 56899999999999998 88888754

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=92.21  E-value=0.13  Score=46.76  Aligned_cols=40  Identities=15%  Similarity=0.252  Sum_probs=35.9

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCC----------eEEEEeCCcc
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFK----------NLEVIDMDRI   75 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg----------~itlvD~d~v   75 (328)
                      ++| ++.+|+++|+|+.|.-+++.|..+|+.          +|.++|..=+
T Consensus        21 ~~l-~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl   70 (254)
T cd00762          21 KKI-SEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL   70 (254)
T ss_pred             CCh-hhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence            568 699999999999999999999999997          8999997643

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=92.20  E-value=1.5  Score=37.03  Aligned_cols=66  Identities=29%  Similarity=0.318  Sum_probs=44.8

Q ss_pred             EEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           43 ILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        43 VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      |+|+|+ |.+|..+++.|...|. +++.+=               +.    ..|.+.        .+.++  ....++.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~---------------R~----~~~~~~--------~~~~~--~~~~d~~d   50 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-EVTALV---------------RS----PSKAED--------SPGVE--IIQGDLFD   50 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-EEEEEE---------------SS----GGGHHH--------CTTEE--EEESCTTC
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-EEEEEe---------------cC----chhccc--------ccccc--cceeeehh
Confidence            789996 9999999999999994 677742               11    123322        45554  44455544


Q ss_pred             cc--hhhhccCCEEEecCC
Q 020259          122 KD--ISFYNDFNIIVLGLD  138 (328)
Q Consensus       122 ~~--~~~~~~~dvVi~~~d  138 (328)
                      ..  .+.++++|.||.+..
T Consensus        51 ~~~~~~al~~~d~vi~~~~   69 (183)
T PF13460_consen   51 PDSVKAALKGADAVIHAAG   69 (183)
T ss_dssp             HHHHHHHHTTSSEEEECCH
T ss_pred             hhhhhhhhhhcchhhhhhh
Confidence            32  556789999999865

...

>PRK06181 short chain dehydrogenase; Provisional

Probab=92.12  E-value=0.9  Score=40.79  Aligned_cols=31  Identities=29%  Similarity=0.440  Sum_probs=26.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           41 ARILVVGA-GGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        41 ~~VliiG~-gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .+|+|.|+ |++|.++++.|+..|. +++++|.
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r   33 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR   33 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46899985 9999999999999996 7888764

>cd08230 glucose_DH Glucose dehydrogenase

Probab=92.11  E-value=1.2  Score=42.14  Aligned_cols=33  Identities=36%  Similarity=0.490  Sum_probs=29.0

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ...+|+|+|+|++|..++..+...|+ ++++++.
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~  204 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR  204 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence            46899999999999999999999998 6777764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK07478 short chain dehydrogenase; Provisional

Probab=92.04  E-value=0.88  Score=40.67  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=27.9

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++++++|.| .||+|.++++.|+..|. ++.+++.
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r   38 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR   38 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            467899998 58999999999999998 6777763

>PRK08374 homoserine dehydrogenase; Provisional

Probab=92.03  E-value=1.8  Score=41.16  Aligned_cols=22  Identities=23%  Similarity=0.369  Sum_probs=19.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH
Q 020259           40 YARILVVGAGGLGCELLKDLAL   61 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l   61 (328)
                      .-+|.|+|+|.+|+.+++.|..
T Consensus         2 ~i~VaIiG~GnVG~~~~~~L~~   23 (336)
T PRK08374          2 EVKVSIFGFGNVGRAVAEVLAE   23 (336)
T ss_pred             eeEEEEECCCHHHHHHHHHHHH
Confidence            3579999999999999999876

>PRK14982 acyl-ACP reductase; Provisional

Probab=91.93  E-value=0.23  Score=47.21  Aligned_cols=37  Identities=32%  Similarity=0.514  Sum_probs=31.5

Q ss_pred             HHHcCCcEEEEcC-ChHHHHHHHHHHH-hCCCeEEEEeCC
Q 020259           36 DLQEYARILVVGA-GGLGCELLKDLAL-SGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG~-gglG~evaknL~l-~Gvg~itlvD~d   73 (328)
                      .| ++++|+|+|+ |.+|+++++.|.. .|+.++++++.+
T Consensus       152 ~l-~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~  190 (340)
T PRK14982        152 DL-SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQ  190 (340)
T ss_pred             Cc-CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCC
Confidence            36 5799999998 8999999999985 588999998643

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.91  E-value=0.72  Score=40.88  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=29.2

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++.+|+|+| .|++|.++++.|+..|. ++++++.+
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~   38 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRN   38 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            478899998 58999999999999998 48888754

>PLN02427 UDP-apiose/xylose synthase

Probab=91.90  E-value=1.4  Score=42.32  Aligned_cols=37  Identities=19%  Similarity=0.326  Sum_probs=29.4

Q ss_pred             HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +++ +..+|+|.| .|-+|+.+++.|+..|--+++.+|.
T Consensus        10 ~~~-~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r   47 (386)
T PLN02427         10 KPI-KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV   47 (386)
T ss_pred             Ccc-cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence            456 567899999 6999999999999885236777774

>PRK05867 short chain dehydrogenase; Provisional

Probab=91.83  E-value=0.84  Score=40.81  Aligned_cols=33  Identities=24%  Similarity=0.384  Sum_probs=28.1

Q ss_pred             HHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEe
Q 020259           37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        37 Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD   71 (328)
                      + ++.+++|.|+ ||+|.++++.|+..|. ++.+++
T Consensus         7 ~-~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~   40 (253)
T PRK05867          7 L-HGKRALITGASTGIGKRVALAYVEAGA-QVAIAA   40 (253)
T ss_pred             C-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence            5 5788999985 8999999999999998 677765

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=91.79  E-value=0.97  Score=41.36  Aligned_cols=101  Identities=12%  Similarity=0.147  Sum_probs=53.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEE---EeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEV---IDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itl---vD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      ..||.|||||.+|..+++.|..-+...+.+   .|.+.    ...+.+ .     +..++-.-.+.+....|++-|++-.
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~----~~~~~~-~-----~~~~~~~~l~~ll~~~~DlVVE~A~   71 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAA----DLPPAL-A-----GRVALLDGLPGLLAWRPDLVVEAAG   71 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCH----HHHHHh-h-----ccCcccCCHHHHhhcCCCEEEECCC
Confidence            468999999999999999987543333332   23221    001110 0     1111111133333445776666533


Q ss_pred             cc-cCCcchhhhc-cCCEEEecCC---CHHHHHHHHHHH
Q 020259          117 CR-IEDKDISFYN-DFNIIVLGLD---SIEARSYINAVA  150 (328)
Q Consensus       117 ~~-~~~~~~~~~~-~~dvVi~~~d---~~~~~~~l~~~~  150 (328)
                      .. +.+..+..++ +.|+++.++.   +......+.+.+
T Consensus        72 ~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A  110 (267)
T PRK13301         72 QQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAA  110 (267)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHH
Confidence            22 2233455565 7888876633   445666666676

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=91.79  E-value=0.32  Score=47.08  Aligned_cols=56  Identities=21%  Similarity=0.229  Sum_probs=41.0

Q ss_pred             CCCCCccHHHHHHHH-cCCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCccCccC
Q 020259           24 GPTFEPGTELRDDLQ-EYARILVVGAGGLGCELLKDLALS-GFKNLEVIDMDRIEVSN   79 (328)
Q Consensus        24 rq~~l~G~~~q~~Lr-~~~~VliiG~gglG~evaknL~l~-Gvg~itlvD~d~v~~~n   79 (328)
                      |--++|...--+.+. +...|+|||+|-+|+.+|..|++. |..+++|+|.+.+....
T Consensus        13 ~~~~~~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~ga   70 (407)
T TIGR01373        13 RGHRGWKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGN   70 (407)
T ss_pred             ccCCCCCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcc
Confidence            444556554444331 245799999999999999999985 87789999988765433

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK06949 short chain dehydrogenase; Provisional

Probab=91.78  E-value=1.2  Score=39.84  Aligned_cols=33  Identities=30%  Similarity=0.406  Sum_probs=28.4

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.+|+|.| .|++|..+++.|+..|. ++++++.
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r   41 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR   41 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            578899998 59999999999999998 6777653

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=91.77  E-value=0.77  Score=43.08  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=28.9

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCC-eEEEEeCC
Q 020259           42 RILVVGA-GGLGCELLKDLALSGFK-NLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~Gvg-~itlvD~d   73 (328)
                      +|.|+|+ |.+|+.++..|+..|+. +++++|.+
T Consensus         2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~   35 (309)
T cd05294           2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRP   35 (309)
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECc
Confidence            7999998 99999999999999984 79999963

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK09186 flagellin modification protein A; Provisional

Probab=91.74  E-value=1  Score=40.07  Aligned_cols=32  Identities=28%  Similarity=0.385  Sum_probs=27.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ++++|+|.| .|++|.++++.|+..|. ++.+++
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~   35 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAAD   35 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence            467899998 58999999999999997 577665

>PRK05866 short chain dehydrogenase; Provisional

Probab=91.72  E-value=1  Score=41.57  Aligned_cols=36  Identities=28%  Similarity=0.413  Sum_probs=29.7

Q ss_pred             HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ..+ ++.+|+|.| .||+|.++++.|+..|. ++.+++.
T Consensus        36 ~~~-~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R   72 (293)
T PRK05866         36 VDL-TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR   72 (293)
T ss_pred             cCC-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            346 578899998 59999999999999997 6777763

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=91.71  E-value=0.48  Score=44.81  Aligned_cols=81  Identities=26%  Similarity=0.275  Sum_probs=52.7

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIV  113 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~  113 (328)
                      ..+ ..+++.|+|.|.+|..+|+.+.  |+| +|...|....                  +..+      .+.+    . 
T Consensus       142 ~~l-~gktvGIiG~GrIG~avA~r~~--~Fgm~v~y~~~~~~------------------~~~~------~~~~----~-  189 (324)
T COG1052         142 FDL-RGKTLGIIGLGRIGQAVARRLK--GFGMKVLYYDRSPN------------------PEAE------KELG----A-  189 (324)
T ss_pred             cCC-CCCEEEEECCCHHHHHHHHHHh--cCCCEEEEECCCCC------------------hHHH------hhcC----c-
Confidence            457 5999999999999999999999  554 5666553321                  0000      0000    0 


Q ss_pred             EEecccCCcchhhhccCCEEEe-cCCCHHHHHHHHHHHHH
Q 020259          114 PHFCRIEDKDISFYNDFNIIVL-GLDSIEARSYINAVACS  152 (328)
Q Consensus       114 ~~~~~~~~~~~~~~~~~dvVi~-~~d~~~~~~~l~~~~~~  152 (328)
                         ..+.  .++.++++|+|+. |-.+.+++..+|.....
T Consensus       190 ---~y~~--l~ell~~sDii~l~~Plt~~T~hLin~~~l~  224 (324)
T COG1052         190 ---RYVD--LDELLAESDIISLHCPLTPETRHLINAEELA  224 (324)
T ss_pred             ---eecc--HHHHHHhCCEEEEeCCCChHHhhhcCHHHHH
Confidence               1111  4677889999854 55678889888876643

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.70  E-value=1.2  Score=44.20  Aligned_cols=39  Identities=23%  Similarity=0.301  Sum_probs=33.4

Q ss_pred             HHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           34 RDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        34 q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      -..+ ..++|+|+|.|..|..+|+.|...|. .+++.|...
T Consensus         9 ~~~~-~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~   47 (458)
T PRK01710          9 KKFI-KNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS   47 (458)
T ss_pred             hhhh-cCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            3456 47899999999999999999999997 799988543

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=91.67  E-value=0.81  Score=42.56  Aligned_cols=31  Identities=26%  Similarity=0.476  Sum_probs=28.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +|.+||+|-+|..++++|...|. +++++|.+
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~   32 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIG   32 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            59999999999999999999997 78888854

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=91.63  E-value=1.3  Score=45.76  Aligned_cols=96  Identities=16%  Similarity=0.163  Sum_probs=54.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ...+|+|||.|..|-..|..|.+.|. +++++|....-..-+ +. -+....+-+...+.-.+.+.++  ++++.....-
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l-~~-gip~~~l~~~~~~~~~~~~~~~--Gv~~~~~~~v  383 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGML-TF-GIPPFKLDKTVLSQRREIFTAM--GIDFHLNCEI  383 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCee-ec-cCCcccCCHHHHHHHHHHHHHC--CeEEEcCCcc
Confidence            37899999999999999999999998 699998554211111 10 1111112222233334455554  3444332211


Q ss_pred             cCC-cchhhhccCCEEEecCCC
Q 020259          119 IED-KDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~-~~~~~~~~~dvVi~~~d~  139 (328)
                      -.+ ...+....||.||.++..
T Consensus       384 ~~~~~~~~l~~~~DaV~latGa  405 (639)
T PRK12809        384 GRDITFSDLTSEYDAVFIGVGT  405 (639)
T ss_pred             CCcCCHHHHHhcCCEEEEeCCC
Confidence            011 112345679999888765

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.61  E-value=1.4  Score=43.43  Aligned_cols=35  Identities=29%  Similarity=0.502  Sum_probs=30.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+.+|+|+|.|+.|..+|+.|...|. .+++.|...
T Consensus         4 ~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~   38 (445)
T PRK04308          4 QNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAEL   38 (445)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            46789999999999999999999997 788888543

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=91.58  E-value=1.6  Score=42.74  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=31.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      -.+|.|||+|-+|..+|.+|+..|. +++.+|.+.-.
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~   38 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHA   38 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHH
Confidence            3679999999999999999999996 79999965543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=91.49  E-value=0.29  Score=45.50  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=31.4

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .| ..++|+|+|+|++|..+++.|...|. +++++|.
T Consensus       148 ~l-~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R  182 (287)
T TIGR02853       148 TI-HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR  182 (287)
T ss_pred             CC-CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46 57899999999999999999999997 8998874

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=91.48  E-value=0.83  Score=43.46  Aligned_cols=81  Identities=19%  Similarity=0.311  Sum_probs=47.9

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccC
Q 020259           42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE  120 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~  120 (328)
                      +|+|+| .|.+|.|+++.|...|...+.|+=             +.+..+.|+.=.         . ....+...  ++ 
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~-------------~as~~~~g~~~~---------~-~~~~~~~~--~~-   54 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVL-------------LASDRSAGRKVT---------F-KGKELEVN--EA-   54 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEE-------------EeccccCCCeee---------e-CCeeEEEE--eC-
Confidence            589999 889999999999886665443321             123333343211         0 11222221  11 


Q ss_pred             CcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          121 DKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       121 ~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                        ..+.++++|+|+.|+.+...+.+.....
T Consensus        55 --~~~~~~~~D~v~~a~g~~~s~~~a~~~~   82 (339)
T TIGR01296        55 --KIESFEGIDIALFSAGGSVSKEFAPKAA   82 (339)
T ss_pred             --ChHHhcCCCEEEECCCHHHHHHHHHHHH
Confidence              1233588999999999877766655543

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=91.47  E-value=0.28  Score=48.02  Aligned_cols=32  Identities=34%  Similarity=0.457  Sum_probs=29.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ..+|+|||+|-+|+++|..|++.|+ +++|+|.
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl-~V~LiE~   33 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGV-PVELYEM   33 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEEc
Confidence            4689999999999999999999998 7999984

>PLN02253 xanthoxin dehydrogenase

Probab=91.44  E-value=1.2  Score=40.55  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=29.5

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +| ++++++|.| .|++|.++++.|+..|. ++.++|.
T Consensus        15 ~l-~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~   50 (280)
T PLN02253         15 RL-LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL   50 (280)
T ss_pred             cc-CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            46 577899998 78999999999999997 6888764

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.42  E-value=0.29  Score=45.27  Aligned_cols=33  Identities=33%  Similarity=0.655  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|.+|..+|.+|+.+|. +++++|.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~   34 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ   34 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence            479999999999999999999997 799998654

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=91.42  E-value=0.65  Score=45.76  Aligned_cols=76  Identities=18%  Similarity=0.118  Sum_probs=50.7

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHh-------CC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC-CC
Q 020259           40 YARILVVGA-GGLGCELLKDLALS-------GF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-SG  109 (328)
Q Consensus        40 ~~~VliiG~-gglG~evaknL~l~-------Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln-p~  109 (328)
                      -.+|.|||+ |.+|+.+|-.|+..       |+ .+|.++|                   +.+.|++..+--|+... |.
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD-------------------~~~~~a~G~amDL~daa~~~  160 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSE-------------------RSKQALEGVAMELEDSLYPL  160 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEc-------------------CCcchhHHHHHHHHHhhhhh
Confidence            468999999 99999999999988       44 2566655                   33345666666666543 33


Q ss_pred             c-EEEEEecccCCcchhhhccCCEEEecCCC
Q 020259          110 V-NIVPHFCRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       110 v-~v~~~~~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      . ++..     ...+.+-++++|+||.+...
T Consensus       161 ~~~v~i-----~~~~ye~~kdaDiVVitAG~  186 (444)
T PLN00112        161 LREVSI-----GIDPYEVFQDAEWALLIGAK  186 (444)
T ss_pred             cCceEE-----ecCCHHHhCcCCEEEECCCC
Confidence            2 1221     12356778999999887553

>PRK06194 hypothetical protein; Provisional

Probab=91.37  E-value=1.6  Score=39.81  Aligned_cols=33  Identities=24%  Similarity=0.341  Sum_probs=28.3

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.+|+|.| .|++|.++++.|+..|. +++++|.
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r   38 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADV   38 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence            467899998 68999999999999997 6888874

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=91.36  E-value=3  Score=39.62  Aligned_cols=35  Identities=29%  Similarity=0.407  Sum_probs=29.8

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      .++...+|+|+|+||+|.-.++....+| -+++.+|
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~  197 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT  197 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe
Confidence            3434788999999999999999999999 5888876

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=91.32  E-value=0.32  Score=45.09  Aligned_cols=33  Identities=27%  Similarity=0.528  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      -.+|.|||+|.+|..+|.+|+.+|. .++++|.+
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS   36 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4689999999999999999999997 79999854

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=91.30  E-value=0.8  Score=44.77  Aligned_cols=79  Identities=13%  Similarity=0.122  Sum_probs=54.5

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      ..| ..++|.|||+|.+|.++|+.+...|. ++..+|....             ..               . ..+  ..
T Consensus       147 ~~L-~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~~-------------~~---------------~-~~~--~~  193 (409)
T PRK11790        147 FEV-RGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIEDK-------------LP---------------L-GNA--RQ  193 (409)
T ss_pred             ccC-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCcc-------------cc---------------c-CCc--ee
Confidence            458 69999999999999999999999998 7878774210             00               0 001  00


Q ss_pred             EecccCCcchhhhccCCEEEecCC-CHHHHHHHHHHHH
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVAC  151 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~  151 (328)
                           ...-+++++.+|+|+.++. +.+++..+|+...
T Consensus       194 -----~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l  226 (409)
T PRK11790        194 -----VGSLEELLAQSDVVSLHVPETPSTKNMIGAEEL  226 (409)
T ss_pred             -----cCCHHHHHhhCCEEEEcCCCChHHhhccCHHHH
Confidence                 1124677889999977644 5678888876553

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=91.27  E-value=0.5  Score=44.11  Aligned_cols=35  Identities=20%  Similarity=0.237  Sum_probs=30.9

Q ss_pred             HHHcCCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAG-GLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~g-glG~evaknL~l~Gvg~itlvD~   72 (328)
                      .+ ..++|.|||.| -+|..++.+|...|. .+++++.
T Consensus       156 ~l-~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~  191 (301)
T PRK14194        156 DL-TGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHS  191 (301)
T ss_pred             CC-CCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECC
Confidence            46 58999999996 999999999999997 8998863

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=91.26  E-value=1.1  Score=39.63  Aligned_cols=33  Identities=27%  Similarity=0.517  Sum_probs=28.0

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.+++|.| .|++|.++++.|+..|. ++.++|.
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r   35 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDL   35 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecC
Confidence            578899998 68999999999999987 6777663

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=91.15  E-value=1.1  Score=41.99  Aligned_cols=35  Identities=23%  Similarity=0.360  Sum_probs=28.5

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhC-CCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSG-FKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~G-vg~itlvD~d   73 (328)
                      ++.+|+|.| .|++|+.+++.|+..| ..+++++|.+
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~   39 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD   39 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            467899998 5899999999999987 3478887743

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02240 UDP-glucose 4-epimerase

Probab=91.08  E-value=2.5  Score=39.68  Aligned_cols=32  Identities=41%  Similarity=0.603  Sum_probs=28.0

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ++.+|+|.| .|.+|+.+++.|+..|. +++++|
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~   36 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID   36 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence            468899998 58999999999999996 788876

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=91.04  E-value=1.8  Score=41.21  Aligned_cols=29  Identities=31%  Similarity=0.307  Sum_probs=22.5

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEE
Q 020259           41 ARILVVGA-GGLGCELLKDLALSGFKNLEV   69 (328)
Q Consensus        41 ~~VliiG~-gglG~evaknL~l~Gvg~itl   69 (328)
                      .+|+|+|+ |.+|.++++.|....--+++.
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~   32 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVA   32 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEE
Confidence            58999997 889999999998763334444

>PTZ00188 adrenodoxin reductase; Provisional

Probab=91.02  E-value=2.1  Score=42.80  Aligned_cols=93  Identities=12%  Similarity=0.064  Sum_probs=56.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh--hCCCcEEEEEe
Q 020259           40 YARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME--RVSGVNIVPHF  116 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~-l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~--lnp~v~v~~~~  116 (328)
                      ..+|+|||.|..|.++|..|. ..|+ +++|+|....-- =+.|. -..++.   ++.+.+.+.+.+  .++.++... +
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pg-GLvR~-GVaPdh---~~~k~v~~~f~~~~~~~~v~f~g-n  111 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPY-GLIRY-GVAPDH---IHVKNTYKTFDPVFLSPNYRFFG-N  111 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCc-cEEEE-eCCCCC---ccHHHHHHHHHHHHhhCCeEEEe-e
Confidence            568999999999999999765 5676 699999766543 23332 133333   233333344332  235555432 2


Q ss_pred             cccCC--cchhhhccCCEEEecCCC
Q 020259          117 CRIED--KDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       117 ~~~~~--~~~~~~~~~dvVi~~~d~  139 (328)
                      -.+..  ..+++...||.||.++..
T Consensus       112 v~VG~Dvt~eeL~~~YDAVIlAtGA  136 (506)
T PTZ00188        112 VHVGVDLKMEELRNHYNCVIFCCGA  136 (506)
T ss_pred             eEecCccCHHHHHhcCCEEEEEcCC
Confidence            22222  135556789999988775

>PRK06172 short chain dehydrogenase; Provisional

Probab=90.97  E-value=0.93  Score=40.43  Aligned_cols=33  Identities=30%  Similarity=0.323  Sum_probs=28.3

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.+|+|.| .|++|.++++.|+..|. ++.+++.
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r   39 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADR   39 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            578899998 58999999999999997 6878764

>PRK12939 short chain dehydrogenase; Provisional

Probab=90.97  E-value=1.5  Score=38.81  Aligned_cols=32  Identities=38%  Similarity=0.497  Sum_probs=27.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ++.+++|.| .|++|.++++.|+..|. ++.+++
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~   38 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGA-TVAFND   38 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEe
Confidence            478899998 58999999999999997 566664

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=90.94  E-value=0.34  Score=46.10  Aligned_cols=35  Identities=23%  Similarity=0.241  Sum_probs=31.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      ...|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence            5679999999999999999999997 7999998754

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=90.94  E-value=3.3  Score=39.04  Aligned_cols=30  Identities=27%  Similarity=0.537  Sum_probs=25.0

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHh-CCCeEEEEeC
Q 020259           42 RILVVGA-GGLGCELLKDLALS-GFKNLEVIDM   72 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~-Gvg~itlvD~   72 (328)
                      +|+|.|+ |-+|+.+++.|... |. +++.+|.
T Consensus         3 ~ilVtGatGfiGs~l~~~L~~~~~~-~V~~~~r   34 (347)
T PRK11908          3 KVLILGVNGFIGHHLSKRILETTDW-EVYGMDM   34 (347)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCC-eEEEEeC
Confidence            6999996 99999999999976 44 7777763

>PRK06138 short chain dehydrogenase; Provisional

Probab=90.93  E-value=1.4  Score=39.02  Aligned_cols=33  Identities=27%  Similarity=0.298  Sum_probs=27.9

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++++++|.| .|++|.++++.|+..|. ++.+++.
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r   37 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR   37 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence            477899998 58999999999999996 6777653

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=90.93  E-value=1.9  Score=46.52  Aligned_cols=40  Identities=35%  Similarity=0.349  Sum_probs=34.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSN   79 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~n   79 (328)
                      ...+|+|||+|..|-++|..|++.|. ++|++|...++.-+
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGLKITLLP  421 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccccccccc
Confidence            47899999999999999999999998 79999987654333

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=90.91  E-value=1.4  Score=42.01  Aligned_cols=82  Identities=17%  Similarity=0.296  Sum_probs=48.9

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCC--eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFK--NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg--~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      ...+|.|+| .|.+|.|+++.|...+.-  ++..+.               .....|+.=..          ....+.. 
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~la---------------s~rsaGk~~~~----------~~~~~~v-   59 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLA---------------SARSAGKKVTF----------EGRDYTV-   59 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEE---------------ccCCCCCeeee----------cCceeEE-
Confidence            367899999 778999999999986653  444442               22233332111          1111111 


Q ss_pred             ecccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                          .+...+.++++|+||.|+.+-..+.+..++.
T Consensus        60 ----~~~~~~~~~~~D~vf~a~p~~~s~~~~~~~~   90 (344)
T PLN02383         60 ----EELTEDSFDGVDIALFSAGGSISKKFGPIAV   90 (344)
T ss_pred             ----EeCCHHHHcCCCEEEECCCcHHHHHHHHHHH
Confidence                1112233578999999988876766666543

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=90.90  E-value=1.3  Score=45.93  Aligned_cols=34  Identities=21%  Similarity=0.381  Sum_probs=30.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|||+|..|...|..|++.|. +++++|...
T Consensus       193 ~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~  226 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANE  226 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            5789999999999999999999998 799998653

>PLN02858 fructose-bisphosphate aldolase

Probab=90.89  E-value=1.3  Score=49.94  Aligned_cols=34  Identities=26%  Similarity=0.420  Sum_probs=30.2

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +..+|.+||+|.+|..+|+||+..|. .++++|.+
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~-~v~v~dr~   36 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGF-KVQAFEIS   36 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            46789999999999999999999997 78888744

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=90.89  E-value=2  Score=40.65  Aligned_cols=92  Identities=14%  Similarity=0.209  Sum_probs=57.5

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH-HHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE-VAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~-a~~~~l~~lnp~v~v~~~  115 (328)
                      .+...+|.|+|+||+|-.++.-+..+|.++|.-+|-..- .-.+.+.|-.+  +.=.+|-. -+.+.++++.+       
T Consensus       183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~-Kl~~A~~fGAT--~~vn~~~~~~vv~~i~~~T~-------  252 (366)
T COG1062         183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPE-KLELAKKFGAT--HFVNPKEVDDVVEAIVELTD-------  252 (366)
T ss_pred             CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHH-HHHHHHhcCCc--eeecchhhhhHHHHHHHhcC-------
Confidence            335788999999999999999999999999999984331 11222222111  11001111 13333333332       


Q ss_pred             ecccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                                  .+.|.+|+|+.+.+..+.--+.+
T Consensus       253 ------------gG~d~~~e~~G~~~~~~~al~~~  275 (366)
T COG1062         253 ------------GGADYAFECVGNVEVMRQALEAT  275 (366)
T ss_pred             ------------CCCCEEEEccCCHHHHHHHHHHH
Confidence                        16899999999988665544455

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=90.85  E-value=1.1  Score=39.95  Aligned_cols=34  Identities=32%  Similarity=0.444  Sum_probs=29.2

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++++|+|.| .|++|.++++.|+..|. ++.+.|.+
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~   43 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRD   43 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCC
Confidence            578999998 59999999999999998 68887643

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.85  E-value=1.2  Score=39.27  Aligned_cols=31  Identities=29%  Similarity=0.411  Sum_probs=26.0

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEE
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVI   70 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlv   70 (328)
                      ++.+++|+| .|++|.++++.|+..|.. +.++
T Consensus         4 ~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~~   35 (247)
T PRK05565          4 MGKVAIVTGASGGIGRAIAELLAKEGAK-VVIA   35 (247)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEE
Confidence            467899998 589999999999999984 5554

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.82  E-value=0.45  Score=49.91  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=30.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|..|+.||..++.+|. .++++|.+.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~  346 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQ  346 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCH
Confidence            579999999999999999999998 899999553

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=90.78  E-value=1.3  Score=41.65  Aligned_cols=74  Identities=27%  Similarity=0.249  Sum_probs=49.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..++.|+|+|..|-.-++.+.. .++.+|.++|.+                   ..|++..++++++ . .+.+....  
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~-------------------~~~~~~~~~~~~~-~-~~~v~~~~--  184 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRS-------------------PERAEAFAARLRD-L-GVPVVAVD--  184 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SS-------------------HHHHHHHHHHHHC-C-CTCEEEES--
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccC-------------------hhHHHHHHHhhcc-c-cccceecc--
Confidence            4679999999999999888764 679999998722                   2588999999998 3 66666542  


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                         ..++.++++|+|++|+.+
T Consensus       185 ---~~~~av~~aDii~taT~s  202 (313)
T PF02423_consen  185 ---SAEEAVRGADIIVTATPS  202 (313)
T ss_dssp             ---SHHHHHTTSSEEEE----
T ss_pred             ---chhhhcccCCEEEEccCC
Confidence               246778999999999775

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=90.74  E-value=1.9  Score=33.18  Aligned_cols=77  Identities=19%  Similarity=0.167  Sum_probs=49.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      +.+|+-+|||. |......+.+..-.+++-+|.+.                   .-.+.+.+++.+....-+++.+..++
T Consensus         2 ~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d~   61 (112)
T PF12847_consen    2 GGRVLDLGCGT-GRLSIALARLFPGARVVGVDISP-------------------EMLEIARERAAEEGLSDRITFVQGDA   61 (112)
T ss_dssp             TCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSH-------------------HHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred             CCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCH-------------------HHHHHHHHHHHhcCCCCCeEEEECcc
Confidence            67899999885 44444433333445799998433                   23445556664545556677777777


Q ss_pred             CCcchhhhccCCEEEecC
Q 020259          120 EDKDISFYNDFNIIVLGL  137 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~  137 (328)
                       ....+...+||+|+...
T Consensus        62 -~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen   62 -EFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             -HGGTTTSSCEEEEEECS
T ss_pred             -ccCcccCCCCCEEEECC
Confidence             44566667899998876

...

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=90.71  E-value=1.4  Score=47.70  Aligned_cols=94  Identities=19%  Similarity=0.195  Sum_probs=55.2

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCC--CCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLF--RMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~--~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      ...+|+|||+|..|-..|..|++.|. ++||+|...    .++-..-|  ..-.+.+.-.+.-.+.++++  .+++....
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~----~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~--Gv~f~~n~  377 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH----DLGGVLRYGIPEFRLPNQLIDDVVEKIKLL--GGRFVKNF  377 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC----CCCceEEccCCCCcChHHHHHHHHHHHHhh--cCeEEEeE
Confidence            47899999999999999999999998 799998542    22222112  11112222233334455554  45544322


Q ss_pred             cccCCcc-hhhhc-cCCEEEecCCC
Q 020259          117 CRIEDKD-ISFYN-DFNIIVLGLDS  139 (328)
Q Consensus       117 ~~~~~~~-~~~~~-~~dvVi~~~d~  139 (328)
                      .-=.+.. .+..+ +||.||.|+..
T Consensus       378 ~vG~dit~~~l~~~~yDAV~LAtGA  402 (944)
T PRK12779        378 VVGKTATLEDLKAAGFWKIFVGTGA  402 (944)
T ss_pred             EeccEEeHHHhccccCCEEEEeCCC
Confidence            1101112 33334 69999888765

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=90.69  E-value=0.39  Score=44.57  Aligned_cols=33  Identities=30%  Similarity=0.515  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ++|.|||+|-+|+.+|.+|+.+|. +++++|.+.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            679999999999999999999996 899998543

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=90.69  E-value=0.42  Score=45.58  Aligned_cols=42  Identities=17%  Similarity=0.238  Sum_probs=36.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLN   81 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~   81 (328)
                      +..+|+|||.|-+|..+|-.|++.|. +++++|.+.+...+-+
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s~   44 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAAG   44 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcchh
Confidence            46889999999999999999999999 9999998887554433

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.66  E-value=1.1  Score=39.51  Aligned_cols=34  Identities=24%  Similarity=0.399  Sum_probs=29.0

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++.+++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~   40 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART   40 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467899998 77999999999999998 78888744

>PRK12367 short chain dehydrogenase; Provisional

Probab=90.66  E-value=0.53  Score=42.44  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=34.7

Q ss_pred             HHHHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           32 ELRDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        32 ~~q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      -.|.+| +.++++|.| .||+|.++++.|+..|. ++.+++.+.
T Consensus         7 ~~~~~l-~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~   48 (245)
T PRK12367          7 MAQSTW-QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK   48 (245)
T ss_pred             hhHHhh-CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence            468999 789999998 58999999999999997 677777543

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.62  E-value=1.4  Score=43.43  Aligned_cols=34  Identities=29%  Similarity=0.411  Sum_probs=30.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++..|+|+|+|+.|-.+|+.|...|. +++..|..
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~   38 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSR   38 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCC
Confidence            57889999999999999999999998 78998843

>PRK06139 short chain dehydrogenase; Provisional

Probab=90.62  E-value=1.4  Score=41.57  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=28.9

Q ss_pred             HHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      + ++.+|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus         5 l-~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R   39 (330)
T PRK06139          5 L-HGAVVVITGASSGIGQATAEAFARRGA-RLVLAAR   39 (330)
T ss_pred             C-CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            5 5788999995 8999999999999998 6777763

>PRK06125 short chain dehydrogenase; Provisional

Probab=90.60  E-value=1.9  Score=38.66  Aligned_cols=35  Identities=31%  Similarity=0.570  Sum_probs=29.9

Q ss_pred             HHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | ++.+++|.|+ |++|.++++.|+..|. ++.+++.+
T Consensus         5 ~-~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~   40 (259)
T PRK06125          5 L-AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD   40 (259)
T ss_pred             C-CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence            5 5788999986 7999999999999998 78888744

>PRK08339 short chain dehydrogenase; Provisional

Probab=90.58  E-value=2.1  Score=38.77  Aligned_cols=35  Identities=17%  Similarity=0.293  Sum_probs=28.8

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | +++.++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus         6 l-~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~   41 (263)
T PRK08339          6 L-SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRN   41 (263)
T ss_pred             C-CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5 467788888 47999999999999997 68887743

>PRK06940 short chain dehydrogenase; Provisional

Probab=90.56  E-value=1.5  Score=39.93  Aligned_cols=31  Identities=26%  Similarity=0.565  Sum_probs=26.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.++|.|+||+|.++++.|. .|. ++.++|.
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r   32 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADY   32 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeC
Confidence            567888899999999999996 785 7888764

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.53  E-value=1.7  Score=40.88  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=31.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ..++|||+|+|.+|--...-+-.+|.++|.++|-
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~  202 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDL  202 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeec
Confidence            5799999999999999999999999999999983

>PRK04457 spermidine synthase; Provisional

Probab=90.50  E-value=1.5  Score=40.08  Aligned_cols=70  Identities=19%  Similarity=0.183  Sum_probs=44.0

Q ss_pred             CCCCccchhhhh-hhhcCCCCCCCCCCccHHHHHHH---H---cCCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCc
Q 020259            3 DTAPSRSRDLDK-LLLRAGNLVGPTFEPGTELRDDL---Q---EYARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDR   74 (328)
Q Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~rq~~l~G~~~q~~L---r---~~~~VliiG~gglG~evaknL~-l~Gvg~itlvD~d~   74 (328)
                      |..+.||.+++. .....-.++++..++-.-.|.-+   .   ...+|+.||+|+ |+ +++.|. ..+-.+++.+|-|.
T Consensus        23 e~~~~R~L~f~~~~~qs~~~~~~P~~l~~~y~~~m~~~l~~~~~~~~vL~IG~G~-G~-l~~~l~~~~p~~~v~~VEidp  100 (262)
T PRK04457         23 EEGGVRSLHLGSDTVQSSMRIDDPSELELAYTRAMMGFLLFNPRPQHILQIGLGG-GS-LAKFIYTYLPDTRQTAVEINP  100 (262)
T ss_pred             ecCCEEEEEECCCcceeeeecCCcccccCHHHHHHHHHHhcCCCCCEEEEECCCH-hH-HHHHHHHhCCCCeEEEEECCH
Confidence            567889999987 34445556667776643333221   0   146899999985 44 555444 34456899998554

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=90.48  E-value=0.41  Score=44.31  Aligned_cols=33  Identities=27%  Similarity=0.547  Sum_probs=30.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|.+|+.+|..|+..|. +++++|.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            579999999999999999999998 799999654

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=90.48  E-value=1.7  Score=39.54  Aligned_cols=32  Identities=19%  Similarity=0.264  Sum_probs=29.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +|+|||+|..|.+.|..|.+.|. +++|+|...
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   33 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANL-KTLIIEGME   33 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-CEEEEeccC
Confidence            69999999999999999999998 699999654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12827 short chain dehydrogenase; Provisional

Probab=90.39  E-value=1.8  Score=38.20  Aligned_cols=32  Identities=38%  Similarity=0.690  Sum_probs=27.8

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ++.+++|.| .|++|.++++.|+..|. ++++++
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~-~v~~~~   37 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGA-DVIVLD   37 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEc
Confidence            567899998 79999999999999998 577776

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=90.38  E-value=1.8  Score=43.08  Aligned_cols=33  Identities=27%  Similarity=0.425  Sum_probs=30.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|+|||.|..|..+|..|.+.|. +++++|..
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~  175 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA  175 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence            5789999999999999999999998 69999865

>PRK07102 short chain dehydrogenase; Provisional

Probab=90.37  E-value=2.7  Score=37.19  Aligned_cols=32  Identities=22%  Similarity=0.386  Sum_probs=27.1

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++|+|.| .|++|.++++.|+..|. +++++|.+
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~   34 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARD   34 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCC
Confidence            4688888 79999999999999997 68887744

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.35  E-value=1  Score=42.06  Aligned_cols=34  Identities=18%  Similarity=0.248  Sum_probs=30.3

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      .+ +.++|+||| .+-+|..+|.+|...|. .+++++
T Consensus       155 ~~-~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~  189 (296)
T PRK14188        155 DL-SGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAH  189 (296)
T ss_pred             CC-CCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEEC
Confidence            36 689999999 99999999999999997 788885

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.35  E-value=1.9  Score=40.46  Aligned_cols=91  Identities=13%  Similarity=0.211  Sum_probs=57.1

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC--CccCcc-CCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEE
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM--DRIEVS-NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIV  113 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~--d~v~~~-nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~  113 (328)
                      .+..+.|.|+|+|++|..++.---.+|.++|.=+|-  |+++.. -++---++++.|.-+    -+.+.|.++-      
T Consensus       190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~----~i~evi~EmT------  259 (375)
T KOG0022|consen  190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKK----PIQEVIIEMT------  259 (375)
T ss_pred             cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccc----cHHHHHHHHh------
Confidence            336789999999999999999999999999999982  121111 111111112211111    2223333321      


Q ss_pred             EEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          114 PHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       114 ~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                                   -.++|.-+.|+.+.++.+.--+.|
T Consensus       260 -------------dgGvDysfEc~G~~~~m~~al~s~  283 (375)
T KOG0022|consen  260 -------------DGGVDYSFECIGNVSTMRAALESC  283 (375)
T ss_pred             -------------cCCceEEEEecCCHHHHHHHHHHh
Confidence                         147899999999998877665555

>PRK07589 ornithine cyclodeaminase; Validated

Probab=90.34  E-value=1.8  Score=41.30  Aligned_cols=74  Identities=15%  Similarity=0.191  Sum_probs=53.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~-l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..+++|||+|..+..-++.+. ...+.++.+++                   ....|+++.++++++.  .+++...   
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~-------------------r~~~~a~~~~~~~~~~--~~~v~~~---  184 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYD-------------------IDPAATAKLARNLAGP--GLRIVAC---  184 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEe-------------------CCHHHHHHHHHHHHhc--CCcEEEe---
Confidence            477999999999988876554 44678888875                   2235788888888762  4455442   


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                        +..++.++++|+|++|+.+
T Consensus       185 --~~~~~av~~ADIIvtaT~S  203 (346)
T PRK07589        185 --RSVAEAVEGADIITTVTAD  203 (346)
T ss_pred             --CCHHHHHhcCCEEEEecCC
Confidence              2356778999999999865

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=90.33  E-value=0.41  Score=46.34  Aligned_cols=33  Identities=36%  Similarity=0.542  Sum_probs=30.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ++|+|||.|-+|+.+|..|+..|. +++++|.+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            489999999999999999999997 799999876

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=90.32  E-value=1.1  Score=44.07  Aligned_cols=104  Identities=18%  Similarity=0.192  Sum_probs=64.7

Q ss_pred             cEEEEcCChHHH-HHHHHHHH----hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHH-HHhhCCCcEEEEE
Q 020259           42 RILVVGAGGLGC-ELLKDLAL----SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKR-VMERVSGVNIVPH  115 (328)
Q Consensus        42 ~VliiG~gglG~-evaknL~l----~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~-l~~lnp~v~v~~~  115 (328)
                      ||.|||+|+.=+ ++++.|+.    .++++|+|+|-|.   ..+.             .+..++++ +++.++.++|+..
T Consensus         2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~-------------~v~~l~~~~~~~~g~~~~v~~T   65 (437)
T cd05298           2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQE-------------KVAEAVKILFKENYPEIKFVYT   65 (437)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHH-------------HHHHHHHHHHHhhCCCeEEEEE
Confidence            799999998632 56666653    4567999998544   1111             12333333 3445666676664


Q ss_pred             ecccCCcchhhhccCCEEEec--CCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeee
Q 020259          116 FCRIEDKDISFYNDFNIIVLG--LDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGH  181 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~--~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~  181 (328)
                      +.     ..+-++++|.||++  +...+.|..-.++.             .++|+  +-..+.|..|.
T Consensus        66 td-----r~eAl~gADfVi~~irvGg~~~r~~De~Ip-------------~kyGi--~gqET~G~GG~  113 (437)
T cd05298          66 TD-----PEEAFTDADFVFAQIRVGGYAMREQDEKIP-------------LKHGV--VGQETCGPGGF  113 (437)
T ss_pred             CC-----HHHHhCCCCEEEEEeeeCCchHHHHHHhHH-------------HHcCc--ceecCccHHHH
Confidence            32     46778999999988  55566666555565             56675  44466666664

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=90.31  E-value=1.5  Score=41.53  Aligned_cols=80  Identities=20%  Similarity=0.310  Sum_probs=47.5

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCe--EEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKN--LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~--itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      .+|+|+| .|.+|.++++.|...|...  +..+               .+..+.|+.=.         ++ ..++...  
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l---------------~s~~~~g~~l~---------~~-g~~i~v~--   54 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLL---------------ASARSAGKELS---------FK-GKELKVE--   54 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEE---------------EccccCCCeee---------eC-CceeEEe--
Confidence            4799999 7889999999999866643  3333               12222333110         11 1222221  


Q ss_pred             ccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          118 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      ++   ....++++|+||.|+.....+.+...+.
T Consensus        55 d~---~~~~~~~vDvVf~A~g~g~s~~~~~~~~   84 (334)
T PRK14874         55 DL---TTFDFSGVDIALFSAGGSVSKKYAPKAA   84 (334)
T ss_pred             eC---CHHHHcCCCEEEECCChHHHHHHHHHHH
Confidence            11   1223478999999998877776666554

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=90.13  E-value=0.99  Score=44.51  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=32.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      .+.+|+|+|+|..|..+++.|...|. .+++.|.....
T Consensus         6 ~~~kv~V~GLG~sG~a~a~~L~~~G~-~v~v~D~~~~~   42 (448)
T COG0771           6 QGKKVLVLGLGKSGLAAARFLLKLGA-EVTVSDDRPAP   42 (448)
T ss_pred             cCCEEEEEecccccHHHHHHHHHCCC-eEEEEcCCCCc
Confidence            37899999999999999999999995 89999966544

>PRK07774 short chain dehydrogenase; Provisional

Probab=90.09  E-value=1.8  Score=38.32  Aligned_cols=34  Identities=32%  Similarity=0.523  Sum_probs=28.9

Q ss_pred             cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++.+++|.|+ |++|.++++.|+..|. ++.++|.+
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~   39 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADIN   39 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5778999995 9999999999999996 68877643

>PRK07035 short chain dehydrogenase; Provisional

Probab=90.06  E-value=1.8  Score=38.56  Aligned_cols=35  Identities=31%  Similarity=0.332  Sum_probs=30.0

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | ++++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         6 l-~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~   41 (252)
T PRK07035          6 L-TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK   41 (252)
T ss_pred             c-CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5 578899998 88999999999999997 78888753

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=90.06  E-value=2  Score=42.70  Aligned_cols=34  Identities=32%  Similarity=0.402  Sum_probs=30.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...+|+|||.|..|.+.|..|.+.|. +++++|..
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~  173 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRH  173 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Confidence            36789999999999999999999998 58998865

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=90.00  E-value=1.7  Score=38.96  Aligned_cols=34  Identities=26%  Similarity=0.344  Sum_probs=28.7

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      | ++++|+|.| .|++|..+++.|+..|. ++.+++.
T Consensus        13 l-~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~   47 (258)
T PRK06935         13 L-DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTH   47 (258)
T ss_pred             C-CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            6 578899998 68999999999999998 5777654

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=90.00  E-value=1  Score=41.70  Aligned_cols=33  Identities=27%  Similarity=0.475  Sum_probs=27.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|+|+|+|.+|..+++.|...|.. ..+++.|
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~-v~i~g~d   35 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLV-VRIIGRD   35 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCe-EEEEeec
Confidence            56899999999999999999999984 5555533

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=89.95  E-value=1.9  Score=39.44  Aligned_cols=21  Identities=24%  Similarity=0.575  Sum_probs=19.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHh
Q 020259           42 RILVVGAGGLGCELLKDLALS   62 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~   62 (328)
                      ||.|||||.+|..+++.|...
T Consensus         3 rVgIiG~G~iG~~~~~~l~~~   23 (265)
T PRK13303          3 KVAMIGFGAIGAAVLELLEHD   23 (265)
T ss_pred             EEEEECCCHHHHHHHHHHhhC
Confidence            799999999999999999875

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=89.94  E-value=1.8  Score=33.81  Aligned_cols=22  Identities=36%  Similarity=0.620  Sum_probs=20.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhC
Q 020259           42 RILVVGAGGLGCELLKDLALSG   63 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~G   63 (328)
                      ||.|||+|..|...+..+...+
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~   23 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSS   23 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTT
T ss_pred             EEEEECCcHHHHHHHHHHHhcC
Confidence            6999999999999999999883

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK06523 short chain dehydrogenase; Provisional

Probab=89.94  E-value=1.1  Score=40.07  Aligned_cols=37  Identities=27%  Similarity=0.399  Sum_probs=31.4

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ++ ++.+|+|.| .|++|.++++.|+..|. ++.+++.+.
T Consensus         6 ~~-~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~   43 (260)
T PRK06523          6 EL-AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSR   43 (260)
T ss_pred             CC-CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCCh
Confidence            36 578899998 58999999999999998 688888654

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=89.92  E-value=2.5  Score=40.10  Aligned_cols=36  Identities=25%  Similarity=0.523  Sum_probs=30.1

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++...+|+|.|+|++|..++......|+.++..+|.
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~  209 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI  209 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            334678999999999999999888899977887764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK13243 glyoxylate reductase; Reviewed

Probab=89.91  E-value=0.45  Score=45.15  Aligned_cols=96  Identities=16%  Similarity=0.161  Sum_probs=60.7

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      ..| ..++|.|||+|.+|.++|+.|...|. ++..+|...-                    ... .   .+.  .+.   
T Consensus       146 ~~L-~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~--------------------~~~-~---~~~--~~~---  194 (333)
T PRK13243        146 YDV-YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRK--------------------PEA-E---KEL--GAE---  194 (333)
T ss_pred             cCC-CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCC--------------------hhh-H---HHc--CCE---
Confidence            358 69999999999999999999999997 6778774210                    000 0   011  111   


Q ss_pred             EecccCCcchhhhccCCEEEecCC-CHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeec
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE  176 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~  176 (328)
                          . ....+.++++|+|+.++. +.+++..++......          -+.+.-+|+++..
T Consensus       195 ----~-~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~----------mk~ga~lIN~aRg  242 (333)
T PRK13243        195 ----Y-RPLEELLRESDFVSLHVPLTKETYHMINEERLKL----------MKPTAILVNTARG  242 (333)
T ss_pred             ----e-cCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhc----------CCCCeEEEECcCc
Confidence                0 123567889999988754 556777776543221          2345556666543

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=89.90  E-value=7.7  Score=30.03  Aligned_cols=90  Identities=12%  Similarity=0.031  Sum_probs=47.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      +.+|+-+|||. |.-....+...+-++++-+|..                   ....+.+.+.++... .-+++....+.
T Consensus        20 ~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s-------------------~~~~~~a~~~~~~~~-~~~~~~~~~~~   78 (124)
T TIGR02469        20 GDVLWDIGAGS-GSITIEAARLVPNGRVYAIERN-------------------PEALRLIERNARRFG-VSNIVIVEGDA   78 (124)
T ss_pred             CCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCC-------------------HHHHHHHHHHHHHhC-CCceEEEeccc
Confidence            56899999976 6655555544444788888833                   234445555555432 11334443333


Q ss_pred             CCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          120 EDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      ..........||+|+...........+....
T Consensus        79 ~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~  109 (124)
T TIGR02469        79 PEALEDSLPEPDRVFIGGSGGLLQEILEAIW  109 (124)
T ss_pred             cccChhhcCCCCEEEECCcchhHHHHHHHHH
Confidence            2211222358999988653323333344333

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=89.88  E-value=1.6  Score=38.81  Aligned_cols=33  Identities=33%  Similarity=0.480  Sum_probs=28.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.+|+|.| .|++|.++++.|...|. ++.+++.
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r   36 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADL   36 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence            467899998 69999999999999997 6777653

>PLN02928 oxidoreductase family protein

Probab=89.85  E-value=0.27  Score=47.00  Aligned_cols=36  Identities=31%  Similarity=0.407  Sum_probs=32.1

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ..| ..++|.|||+|.+|.++|+.|...|. +++.+|.
T Consensus       155 ~~l-~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr  190 (347)
T PLN02928        155 DTL-FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR  190 (347)
T ss_pred             cCC-CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence            358 69999999999999999999999998 7888875

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=89.84  E-value=0.53  Score=43.86  Aligned_cols=35  Identities=23%  Similarity=0.428  Sum_probs=31.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEV   77 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~   77 (328)
                      .|+|||+|-+|+.+|..|++.|. +++|+|.+.+..
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~   35 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS   35 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence            48999999999999999999999 999999985543

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK06914 short chain dehydrogenase; Provisional

Probab=89.84  E-value=2.4  Score=38.48  Aligned_cols=34  Identities=21%  Similarity=0.272  Sum_probs=27.6

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++.+++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~   36 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRN   36 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCC
Confidence            356688888 68999999999999997 67777644

>PRK06823 ornithine cyclodeaminase; Validated

Probab=89.82  E-value=2.2  Score=40.19  Aligned_cols=74  Identities=19%  Similarity=0.087  Sum_probs=53.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..++.|+|+|..+-.-++.+.. ..+.++.++|.                   ...|+++.++.+++.  .+++...   
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r-------------------~~~~a~~~~~~~~~~--~~~v~~~---  183 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR-------------------SETALEEYRQYAQAL--GFAVNTT---  183 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC-------------------CHHHHHHHHHHHHhc--CCcEEEE---
Confidence            5789999999999988887763 35677777652                   336788888887764  3344332   


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                        +..++.+.++|+|++|+.+
T Consensus       184 --~~~~~av~~ADIV~taT~s  202 (315)
T PRK06823        184 --LDAAEVAHAANLIVTTTPS  202 (315)
T ss_pred             --CCHHHHhcCCCEEEEecCC
Confidence              2346777999999999775

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=89.81  E-value=1.4  Score=39.33  Aligned_cols=33  Identities=30%  Similarity=0.506  Sum_probs=28.2

Q ss_pred             cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +..+++|.|+ |++|..+++.|+..|. ++.+++.
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r   39 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADL   39 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeC
Confidence            4678999985 9999999999999998 6777764

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=89.75  E-value=0.5  Score=43.97  Aligned_cols=34  Identities=26%  Similarity=0.383  Sum_probs=28.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      .+|+|||+|..|+.+|..|++.|+ +++|+|....
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~i~E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGI-DVTIIERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhccc-ccccchhccc
Confidence            479999999999999999999999 6999986543

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=89.73  E-value=1.5  Score=41.64  Aligned_cols=81  Identities=22%  Similarity=0.265  Sum_probs=45.8

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           41 ARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        41 ~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      .+|+|+|+ |-+|.|+++.|...+.-...|.=             +.+.+..|+.=        .  ........     
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~-------------v~s~~~aG~~l--------~--~~~~~l~~-----   56 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEERDFPVGTLHL-------------LASSESAGHSV--------P--FAGKNLRV-----   56 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhCCCCceEEEE-------------EECcccCCCee--------c--cCCcceEE-----
Confidence            57999995 88999999999966554333221             11223345431        1  11111111     


Q ss_pred             CCcchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259          120 EDKDISFYNDFNIIVLGLDSIEARSYINAV  149 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~  149 (328)
                      .+.+..-++++|+|+.|+.+-..+.++..+
T Consensus        57 ~~~~~~~~~~vD~vFla~p~~~s~~~v~~~   86 (336)
T PRK05671         57 REVDSFDFSQVQLAFFAAGAAVSRSFAEKA   86 (336)
T ss_pred             eeCChHHhcCCCEEEEcCCHHHHHHHHHHH
Confidence            111212248899999998865555555544

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=89.69  E-value=1.9  Score=38.62  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=29.9

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++ ++++++|.| .|++|..+++.|+..|. ++++++.
T Consensus         9 ~~-~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r   44 (259)
T PRK08213          9 DL-SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR   44 (259)
T ss_pred             Cc-CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            35 578899998 69999999999999998 6777764

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=89.69  E-value=0.52  Score=44.17  Aligned_cols=34  Identities=26%  Similarity=0.389  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|+|+|++|+-++..|..+|. .++++..+.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~-~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGF-DVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence            4679999999999999999999995 788887654

>PRK13984 putative oxidoreductase; Provisional

Probab=89.68  E-value=1.9  Score=44.31  Aligned_cols=96  Identities=13%  Similarity=0.052  Sum_probs=53.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +..+|+|||+|..|...|..|.+.|+ +++++|....-...+...  +....+.+.-.+...+.+++.+  +++.....-
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~~~gG~~~~~--i~~~~~~~~~~~~~~~~~~~~g--v~~~~~~~v  356 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLSKPGGVMRYG--IPSYRLPDEALDKDIAFIEALG--VKIHLNTRV  356 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceEeec--CCcccCCHHHHHHHHHHHHHCC--cEEECCCEe
Confidence            46789999999999999999999998 799998654322222111  1111122211222334555543  343222110


Q ss_pred             cCC-cchhhhccCCEEEecCCC
Q 020259          119 IED-KDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~-~~~~~~~~~dvVi~~~d~  139 (328)
                      ..+ ...+.-..||.||.++..
T Consensus       357 ~~~~~~~~~~~~yD~vilAtGa  378 (604)
T PRK13984        357 GKDIPLEELREKHDAVFLSTGF  378 (604)
T ss_pred             CCcCCHHHHHhcCCEEEEEcCc
Confidence            011 112233479999888764

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=89.67  E-value=0.74  Score=42.57  Aligned_cols=29  Identities=24%  Similarity=0.484  Sum_probs=25.7

Q ss_pred             EEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           45 VVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        45 iiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +||+|.+|..++++|...|. +++++|.+.
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~   29 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFP   29 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCC-eEEEEeCCH
Confidence            58999999999999999997 799998653

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=89.66  E-value=0.47  Score=45.79  Aligned_cols=35  Identities=26%  Similarity=0.349  Sum_probs=31.6

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .| ..++|.|||+|.+|+.+|+.|...|+ ++..+|+
T Consensus       113 ~L-~gktvGIIG~G~IG~~vA~~l~a~G~-~V~~~dp  147 (378)
T PRK15438        113 SL-HDRTVGIVGVGNVGRRLQARLEALGI-KTLLCDP  147 (378)
T ss_pred             Cc-CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            47 69999999999999999999999998 6778874

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=89.63  E-value=2.4  Score=46.31  Aligned_cols=95  Identities=17%  Similarity=0.259  Sum_probs=55.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +..+|+|||.|..|...|..|++.|. +++|+|....--.-+..  -+...-.++.-.+...+.+.++  ++++.... .
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~~~GG~l~~--gip~~rl~~e~~~~~~~~l~~~--Gv~~~~~~-~  502 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALHVVGGVLQY--GIPSFRLPRDIIDREVQRLVDI--GVKIETNK-V  502 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCcceeec--cCCccCCCHHHHHHHHHHHHHC--CCEEEeCC-c
Confidence            36789999999999999999999998 79999865322111111  1111122333344455566655  35544321 1


Q ss_pred             cC-Ccc-hhhh--ccCCEEEecCCC
Q 020259          119 IE-DKD-ISFY--NDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~-~~~-~~~~--~~~dvVi~~~d~  139 (328)
                      +. +.. .+..  .+||.||.++..
T Consensus       503 vg~~~~~~~l~~~~~yDaViIATGa  527 (1006)
T PRK12775        503 IGKTFTVPQLMNDKGFDAVFLGVGA  527 (1006)
T ss_pred             cCCccCHHHHhhccCCCEEEEecCC
Confidence            11 111 2222  369999888765

>PRK06057 short chain dehydrogenase; Provisional

Probab=89.62  E-value=0.68  Score=41.47  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=31.2

Q ss_pred             HHHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           36 DLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        36 ~Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +| ++.+|+|+|+ |++|.++++.|+..|. ++.++|.+.
T Consensus         4 ~~-~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~   41 (255)
T PRK06057          4 RL-AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDP   41 (255)
T ss_pred             cC-CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            36 6889999995 9999999999999997 688887543

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=89.59  E-value=0.5  Score=44.18  Aligned_cols=32  Identities=25%  Similarity=0.419  Sum_probs=29.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +|.|||+|.+|+.++.+|+..|. +++++|.+.
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence            69999999999999999999998 799999664

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=89.59  E-value=0.52  Score=44.65  Aligned_cols=78  Identities=15%  Similarity=0.097  Sum_probs=51.7

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      ..| ++.+|.|||+|.+|..+|++|..+|+ ++.+.+...                   .++...+   .+.  .+.+  
T Consensus        13 ~~L-~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r~~-------------------~~s~~~A---~~~--G~~~--   64 (330)
T PRK05479         13 SLI-KGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLREG-------------------SKSWKKA---EAD--GFEV--   64 (330)
T ss_pred             hhh-CCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEECCc-------------------hhhHHHH---HHC--CCee--
Confidence            457 68999999999999999999999998 566654211                   1111111   111  2221  


Q ss_pred             EecccCCcchhhhccCCEEEecCCCHHHHHHH
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLDSIEARSYI  146 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l  146 (328)
                           . ...+.++++|+|+.++.+......+
T Consensus        65 -----~-s~~eaa~~ADVVvLaVPd~~~~~V~   90 (330)
T PRK05479         65 -----L-TVAEAAKWADVIMILLPDEVQAEVY   90 (330)
T ss_pred             -----C-CHHHHHhcCCEEEEcCCHHHHHHHH
Confidence                 1 2456778999999998876665555

>PRK09126 hypothetical protein; Provisional

Probab=89.57  E-value=0.45  Score=45.65  Aligned_cols=36  Identities=33%  Similarity=0.521  Sum_probs=31.9

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      ++..|+|||+|..|+.+|..|++.|+ +++|+|....
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~   37 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGL-KVTLIERQPL   37 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCc
Confidence            46789999999999999999999999 6899986653

>PLN02206 UDP-glucuronate decarboxylase

Probab=89.55  E-value=1.7  Score=42.90  Aligned_cols=33  Identities=33%  Similarity=0.479  Sum_probs=28.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.+|+|.| .|-+|+.+++.|...|. ++..+|.
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~  151 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN  151 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence            367899999 69999999999999997 5777764

>PRK12829 short chain dehydrogenase; Provisional

Probab=89.54  E-value=1.6  Score=38.93  Aligned_cols=36  Identities=33%  Similarity=0.559  Sum_probs=30.6

Q ss_pred             HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ..+ ++.+++|.| .|++|..+++.|+..|. ++++++.
T Consensus         7 ~~~-~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r   43 (264)
T PRK12829          7 KPL-DGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDV   43 (264)
T ss_pred             hcc-CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence            346 689999998 69999999999999998 5888773

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=89.53  E-value=0.47  Score=44.79  Aligned_cols=32  Identities=44%  Similarity=0.684  Sum_probs=29.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|+|||+|.+|+.++..|+.+|. +++++|.+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence            579999999999999999999996 79998854

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=89.51  E-value=4.1  Score=37.28  Aligned_cols=30  Identities=33%  Similarity=0.497  Sum_probs=24.8

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCC-CeEEEEe
Q 020259           42 RILVVG-AGGLGCELLKDLALSGF-KNLEVID   71 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~Gv-g~itlvD   71 (328)
                      +|+|.| .|.+|.++++.|...|- .+++++|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~   32 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLD   32 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEec
Confidence            589998 59999999999999873 3677766

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=89.50  E-value=1.8  Score=47.01  Aligned_cols=35  Identities=26%  Similarity=0.374  Sum_probs=31.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ...+|+|||.|..|-.+|..|++.|. +++|+|...
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~  572 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE  572 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence            46789999999999999999999998 799998654

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=89.46  E-value=3.3  Score=40.88  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=31.0

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...+|+|||.|..|.+.|..|.+.|. +++|+|..
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~  165 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL  165 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            46789999999999999999999998 79999964

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=89.43  E-value=0.52  Score=46.30  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=28.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|+|||+|-.|+|+|..|++.|+ +++|++..
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~r   32 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGV-PVILYEMR   32 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-cEEEEecc
Confidence            479999999999999999999998 79999853

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.41  E-value=3.1  Score=38.64  Aligned_cols=79  Identities=23%  Similarity=0.225  Sum_probs=50.5

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      .| ++.+++|.| .||+|.++++.|+..|. ++.+.|...                  ..+++.+.+.++...  .++..
T Consensus         9 ~l-~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~------------------~~~~~~~~~~i~~~g--~~~~~   66 (306)
T PRK07792          9 DL-SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVAS------------------ALDASDVLDEIRAAG--AKAVA   66 (306)
T ss_pred             CC-CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCc------------------hhHHHHHHHHHHhcC--CeEEE
Confidence            45 578888888 68999999999999998 677766321                  123445555565533  34555


Q ss_pred             EecccCCcc---------hhhhccCCEEEecC
Q 020259          115 HFCRIEDKD---------ISFYNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~---------~~~~~~~dvVi~~~  137 (328)
                      ...++.+..         .+ +...|+||.+.
T Consensus        67 ~~~Dv~d~~~~~~~~~~~~~-~g~iD~li~nA   97 (306)
T PRK07792         67 VAGDISQRATADELVATAVG-LGGLDIVVNNA   97 (306)
T ss_pred             EeCCCCCHHHHHHHHHHHHH-hCCCCEEEECC
Confidence            555554421         12 35678887764

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=89.40  E-value=0.49  Score=47.85  Aligned_cols=33  Identities=24%  Similarity=0.318  Sum_probs=30.0

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.+|+|+|+||+|..+++.|+..|+ ++++++.
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR  410 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR  410 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence            46789999999999999999999999 8999863

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=89.36  E-value=0.59  Score=43.58  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=31.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~  184 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK  184 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            48999999999999999999999998 89998744

>PRK05876 short chain dehydrogenase; Provisional

Probab=89.34  E-value=2  Score=39.24  Aligned_cols=34  Identities=24%  Similarity=0.333  Sum_probs=28.5

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++.+++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~   39 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVD   39 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467788887 88999999999999998 67777633

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.33  E-value=1.3  Score=43.54  Aligned_cols=34  Identities=29%  Similarity=0.311  Sum_probs=30.3

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++++|+|+|.|++|..+|+.|...|. ++++.|.+
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~   37 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK   37 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            46789999999999999999999997 78888854

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=89.30  E-value=2.1  Score=38.81  Aligned_cols=35  Identities=29%  Similarity=0.503  Sum_probs=29.6

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      + ++.+++|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         8 ~-~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~   43 (278)
T PRK08277          8 L-KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN   43 (278)
T ss_pred             c-CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5 577889998 58999999999999998 68887743

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=89.27  E-value=1.6  Score=40.67  Aligned_cols=33  Identities=21%  Similarity=0.376  Sum_probs=27.6

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ...+|+|.| .||+|.++++.|+..|. ++.+++.
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r   38 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR   38 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            356788888 68999999999999995 7888764

>PRK09291 short chain dehydrogenase; Provisional

Probab=89.26  E-value=3.1  Score=37.02  Aligned_cols=31  Identities=32%  Similarity=0.402  Sum_probs=25.5

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ..+|+|.| .|++|..+++.|+..|. ++++.+
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~   33 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGH-NVIAGV   33 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEe
Confidence            45799998 58999999999999997 555554

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.26  E-value=1.5  Score=38.84  Aligned_cols=30  Identities=30%  Similarity=0.464  Sum_probs=24.7

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEE
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEV   69 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itl   69 (328)
                      ...+++|.| .|++|.++++.|+..|.. +.+
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~-v~~   33 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYD-IAV   33 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEE
Confidence            457899998 689999999999999974 444

>PRK06436 glycerate dehydrogenase; Provisional

Probab=89.22  E-value=0.31  Score=45.63  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=32.0

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..| ..++|.|+|+|.+|.++|+.|...|. ++..+|..
T Consensus       118 ~~L-~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~  154 (303)
T PRK06436        118 KLL-YNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS  154 (303)
T ss_pred             CCC-CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            468 69999999999999999998887788 78888853

>PRK05872 short chain dehydrogenase; Provisional

Probab=89.20  E-value=3.1  Score=38.35  Aligned_cols=35  Identities=34%  Similarity=0.621  Sum_probs=29.5

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      + ++.+|+|.| .||+|.++++.|+..|. ++.+++.+
T Consensus         7 l-~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~   42 (296)
T PRK05872          7 L-AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLE   42 (296)
T ss_pred             C-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5 578899998 58999999999999997 68887643

>PRK05650 short chain dehydrogenase; Provisional

Probab=89.19  E-value=2.2  Score=38.58  Aligned_cols=30  Identities=33%  Similarity=0.654  Sum_probs=25.4

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +|+|.| .|++|.++++.|+..|. ++++++.
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r   32 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGW-RLALADV   32 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            588888 68999999999999998 5777653

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=89.19  E-value=2.3  Score=42.04  Aligned_cols=34  Identities=24%  Similarity=0.472  Sum_probs=30.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...+|+|||.|..|.+.|..|.+.|. +++|+|..
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~  172 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR  172 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence            35789999999999999999999997 79999855

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=89.13  E-value=0.54  Score=45.46  Aligned_cols=35  Identities=37%  Similarity=0.430  Sum_probs=31.6

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .| .+++|.|||+|.+|..+++.|...|+ ++..+|+
T Consensus       113 ~l-~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp  147 (381)
T PRK00257        113 DL-AERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDP  147 (381)
T ss_pred             Cc-CcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence            57 68999999999999999999999998 6888875

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=89.11  E-value=0.77  Score=43.61  Aligned_cols=34  Identities=29%  Similarity=0.421  Sum_probs=30.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      .|+|||.|-+|+.+|..|+..|. +++|+|.+.+.
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~   35 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA   35 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence            69999999999999999999997 79999988764

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=89.10  E-value=0.59  Score=44.51  Aligned_cols=33  Identities=30%  Similarity=0.453  Sum_probs=29.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      .|+|||.|-+|+.+|..|++.|. +++|+|....
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~   34 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL   34 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            58999999999999999999997 7999998654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=89.04  E-value=2.1  Score=32.64  Aligned_cols=81  Identities=25%  Similarity=0.501  Sum_probs=48.5

Q ss_pred             cCCcEEEEcCChHHHHHHH-HHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVGAGGLGCELLK-DLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG~gglG~evak-nL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +..+|+|+|+|++|..++. .....|.+-..++|.+.              +.+|+.-           . .+.+.   .
T Consensus         2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~--------------~~~G~~i-----------~-gipV~---~   52 (96)
T PF02629_consen    2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDP--------------EKIGKEI-----------G-GIPVY---G   52 (96)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECT--------------TTTTSEE-----------T-TEEEE---S
T ss_pred             CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCC--------------CccCcEE-----------C-CEEee---c
Confidence            3678999999999998864 34567888788888332              2333311           0 22222   1


Q ss_pred             ccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          118 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .+.+ -.+.. +.|+.|.++....++....+++
T Consensus        53 ~~~~-l~~~~-~i~iaii~VP~~~a~~~~~~~~   83 (96)
T PF02629_consen   53 SMDE-LEEFI-EIDIAIITVPAEAAQEVADELV   83 (96)
T ss_dssp             SHHH-HHHHC-TTSEEEEES-HHHHHHHHHHHH
T ss_pred             cHHH-hhhhh-CCCEEEEEcCHHHHHHHHHHHH
Confidence            1111 12222 3888888987777776666665

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=88.98  E-value=3.9  Score=36.10  Aligned_cols=80  Identities=16%  Similarity=0.194  Sum_probs=50.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE  120 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~  120 (328)
                      .++.|+|.|-+|+.++..|+.+|. +++|--               +   -+..+.+++++.+   -|.+.        .
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~-eV~igs---------------~---r~~~~~~a~a~~l---~~~i~--------~   51 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGH-EVIIGS---------------S---RGPKALAAAAAAL---GPLIT--------G   51 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCC-eEEEec---------------C---CChhHHHHHHHhh---ccccc--------c
Confidence            368999999999999999999995 555531               0   0112333333333   33321        1


Q ss_pred             CcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          121 DKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       121 ~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      ..+.+-.+.+|+||.++.-......+.++.
T Consensus        52 ~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~   81 (211)
T COG2085          52 GSNEDAAALADVVVLAVPFEAIPDVLAELR   81 (211)
T ss_pred             CChHHHHhcCCEEEEeccHHHHHhHHHHHH
Confidence            235666788999999988665555444443

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=88.93  E-value=3.2  Score=40.92  Aligned_cols=33  Identities=39%  Similarity=0.436  Sum_probs=28.4

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|+|.| .|-+|+++++.|...|. +++.+|..
T Consensus       120 ~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~  153 (436)
T PLN02166        120 RLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF  153 (436)
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            57899998 68999999999999997 78888743

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=88.90  E-value=0.44  Score=49.93  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=30.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      =.+|.|||+|..|+.||..++.+|+ .++++|.+.
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~  346 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQ  346 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            3579999999999999999999998 899999654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=88.90  E-value=2.8  Score=45.57  Aligned_cols=34  Identities=26%  Similarity=0.327  Sum_probs=31.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|||.|.-|-..|..|++.|. +++|+|...
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~  570 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE  570 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence            5689999999999999999999998 799999654

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=88.89  E-value=0.79  Score=48.05  Aligned_cols=34  Identities=21%  Similarity=0.366  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHH-HhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLA-LSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~-l~Gvg~itlvD~d~   74 (328)
                      -++|.|||+|..|+.+|-.++ .+|+ .++++|.+.
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~  343 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINP  343 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCH
Confidence            368999999999999999999 8898 899999643

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=88.84  E-value=0.53  Score=45.47  Aligned_cols=34  Identities=35%  Similarity=0.488  Sum_probs=30.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ...|+|||+|..|..+|-.|.+.|+ +++|+|...
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGL-EVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence            4679999999999999999999998 799999765

>PRK08643 acetoin reductase; Validated

Probab=88.83  E-value=2.6  Score=37.59  Aligned_cols=32  Identities=31%  Similarity=0.592  Sum_probs=27.0

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.++|.| .|++|.++++.|+..|. ++.++|.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r   34 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDY   34 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            46788887 78999999999999997 6877763

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=88.81  E-value=4.6  Score=35.63  Aligned_cols=70  Identities=21%  Similarity=0.351  Sum_probs=44.7

Q ss_pred             EEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           43 ILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        43 VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      |+|+|+ |.+|..+++.|...|. +++.+               .+..      .....+.++..  .+++.  ..+..+
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l---------------~R~~------~~~~~~~l~~~--g~~vv--~~d~~~   54 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF-SVRAL---------------VRDP------SSDRAQQLQAL--GAEVV--EADYDD   54 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG-CEEEE---------------ESSS------HHHHHHHHHHT--TTEEE--ES-TT-
T ss_pred             CEEECCccHHHHHHHHHHHhCCC-CcEEE---------------Eecc------chhhhhhhhcc--cceEe--ecccCC
Confidence            789995 9999999999999776 45553               1211      22234445553  45543  333333


Q ss_pred             c--chhhhccCCEEEecCC
Q 020259          122 K--DISFYNDFNIIVLGLD  138 (328)
Q Consensus       122 ~--~~~~~~~~dvVi~~~d  138 (328)
                      .  -.+.+++.|.|+.++.
T Consensus        55 ~~~l~~al~g~d~v~~~~~   73 (233)
T PF05368_consen   55 PESLVAALKGVDAVFSVTP   73 (233)
T ss_dssp             HHHHHHHHTTCSEEEEESS
T ss_pred             HHHHHHHHcCCceEEeecC
Confidence            2  2567899999998877

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=88.77  E-value=2.9  Score=39.09  Aligned_cols=76  Identities=22%  Similarity=0.213  Sum_probs=55.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..++.|+|+|..|-.-++.+.. -++.++.++|.                   ...|++..++++++.. .+++...   
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r-------------------~~~~a~~f~~~~~~~~-~~~v~~~---  173 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSR-------------------NFDHARAFAERFSKEF-GVDIRPV---  173 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC-------------------CHHHHHHHHHHHHHhc-CCcEEEe---
Confidence            4678999999999988877764 46788888762                   2367888888888743 3444443   


Q ss_pred             cCCcchhhhccCCEEEecCCCH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSI  140 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~  140 (328)
                        +..++...++|+|++|+.+.
T Consensus       174 --~~~~eav~~aDIV~taT~s~  193 (301)
T PRK06407        174 --DNAEAALRDADTITSITNSD  193 (301)
T ss_pred             --CCHHHHHhcCCEEEEecCCC
Confidence              23567789999999998763

>PRK06185 hypothetical protein; Provisional

Probab=88.68  E-value=0.64  Score=44.89  Aligned_cols=35  Identities=29%  Similarity=0.356  Sum_probs=31.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ++..|+|||.|.+|..+|..|++.|+ +++|+|...
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~   39 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA   39 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            36789999999999999999999998 799999764

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=88.63  E-value=2.5  Score=40.18  Aligned_cols=82  Identities=18%  Similarity=0.174  Sum_probs=49.8

Q ss_pred             cCCcEEEEcC-ChHHHHHHHHHHH--hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           39 EYARILVVGA-GGLGCELLKDLAL--SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        39 ~~~~VliiG~-gglG~evaknL~l--~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      ++.+|.|||+ |-+|.|+++.|..  -.+.+|..+-.+               ...|+.=.      +.  ...+.++  
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~---------------~saG~~~~------~~--~~~~~v~--   57 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASE---------------ESAGETLR------FG--GKSVTVQ--   57 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEcc---------------CcCCceEE------EC--CcceEEE--
Confidence            3678999995 8899999999998  456677776322               23333211      11  1122332  


Q ss_pred             ecccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                        .+   +...|+++|+|+.|+..-....+..++.
T Consensus        58 --~~---~~~~~~~~Dvvf~a~p~~~s~~~~~~~~   87 (336)
T PRK08040         58 --DA---AEFDWSQAQLAFFVAGREASAAYAEEAT   87 (336)
T ss_pred             --eC---chhhccCCCEEEECCCHHHHHHHHHHHH
Confidence              11   1223478999999988766655555543

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=88.58  E-value=2.7  Score=38.57  Aligned_cols=78  Identities=17%  Similarity=0.292  Sum_probs=51.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           41 ARILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gv---g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      .+|.+||+|..|..++.-|...|.   .+|.+.|...                   .|    ++.+...++.. +     
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~-------------------e~----~~~l~~~~g~~-~-----   52 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSE-------------------EK----RAALAAEYGVV-T-----   52 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCH-------------------HH----HHHHHHHcCCc-c-----
Confidence            479999999999999999999994   4666654221                   12    22334434332 1     


Q ss_pred             ccCCcchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259          118 RIEDKDISFYNDFNIIVLGLDSIEARSYINAV  149 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~  149 (328)
                        ...+.+.....|+||.|+-+......+.++
T Consensus        53 --~~~~~~~~~~advv~LavKPq~~~~vl~~l   82 (266)
T COG0345          53 --TTDNQEAVEEADVVFLAVKPQDLEEVLSKL   82 (266)
T ss_pred             --cCcHHHHHhhCCEEEEEeChHhHHHHHHHh
Confidence              233567778899999998875555444443

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=88.54  E-value=0.81  Score=45.98  Aligned_cols=42  Identities=21%  Similarity=0.350  Sum_probs=34.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCcc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNR   82 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r   82 (328)
                      ...|+|||.|.+|+.+|..|++.|. +++|+|...+....-.+
T Consensus         6 ~~DVvIIGGGi~G~~~A~~la~rGl-~V~LvEk~d~~~GtS~~   47 (508)
T PRK12266          6 TYDLLVIGGGINGAGIARDAAGRGL-SVLLCEQDDLASATSSA   47 (508)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-eEEEEecCCCCCCcccc
Confidence            5679999999999999999999999 69999976664433333

>PRK07074 short chain dehydrogenase; Provisional

Probab=88.51  E-value=3  Score=37.17  Aligned_cols=32  Identities=31%  Similarity=0.525  Sum_probs=27.4

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +.+++|.|+ |++|.++++.|+..|. ++.+++.
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r   34 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDI   34 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence            567999985 8999999999999996 6888764

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=88.51  E-value=0.5  Score=45.74  Aligned_cols=92  Identities=21%  Similarity=0.232  Sum_probs=59.9

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCccCccCCccccCCCCCC--CCChHHHHHHHHHHhhCCCc
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFK--NLEVIDMDRIEVSNLNRQFLFRMED--VGKPKAEVAAKRVMERVSGV  110 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg--~itlvD~d~v~~~nl~r~~l~~~~d--iG~~Ka~a~~~~l~~lnp~v  110 (328)
                      ++| ++.+|++.|+|+-|..+++.|..+|+.  +|.++|..=+-..+        .+|  .++.|.+.+.+......   
T Consensus       195 k~l-~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~--------r~~~~~~~~k~~~a~~~~~~~~---  262 (432)
T COG0281         195 KKL-KDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDG--------REDLTMNQKKYAKAIEDTGERT---  262 (432)
T ss_pred             CCc-cceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCC--------CcccccchHHHHHHHhhhcccc---
Confidence            568 699999999999999999999999998  99999966432211        122  45666655543332221   


Q ss_pred             EEEEEecccCCcchhhhccCCEEEecCCC-HHHHHHHHHHH
Q 020259          111 NIVPHFCRIEDKDISFYNDFNIIVLGLDS-IEARSYINAVA  150 (328)
Q Consensus       111 ~v~~~~~~~~~~~~~~~~~~dvVi~~~d~-~~~~~~l~~~~  150 (328)
                      +            .+-+.++|+.|.+... .-...++.+++
T Consensus       263 ~------------~~~~~~adv~iG~S~~G~~t~e~V~~Ma  291 (432)
T COG0281         263 L------------DLALAGADVLIGVSGVGAFTEEMVKEMA  291 (432)
T ss_pred             c------------cccccCCCEEEEcCCCCCcCHHHHHHhc
Confidence            1            1134678888777542 22334555554

>PRK08589 short chain dehydrogenase; Validated

Probab=88.49  E-value=2  Score=38.96  Aligned_cols=33  Identities=27%  Similarity=0.377  Sum_probs=28.1

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      | ++++++|.| .+|+|.++++.|+..|. ++.+++
T Consensus         4 l-~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~   37 (272)
T PRK08589          4 L-ENKVAVITGASTGIGQASAIALAQEGA-YVLAVD   37 (272)
T ss_pred             C-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence            5 577899998 58999999999999997 677765

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=88.44  E-value=0.65  Score=44.53  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=30.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ...|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~   40 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEP   40 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCC
Confidence            4579999999999999999999998 799999764

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=88.42  E-value=0.61  Score=40.35  Aligned_cols=84  Identities=21%  Similarity=0.274  Sum_probs=45.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      +|.|+|+|=+|...|-.|+..|. +++-+|.|.-....+++....    +..+-.+.+.++..+ +......       .
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p----~~E~~l~~ll~~~~~-~~~l~~t-------~   68 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELP----IYEPGLDELLKENVS-AGRLRAT-------T   68 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSS----S-CTTHHHHHHHHHH-TTSEEEE-------S
T ss_pred             EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhcccc----ccccchhhhhccccc-cccchhh-------h
Confidence            69999999999999999999997 788999887655555544221    112222222222221 2222221       1


Q ss_pred             cchhhhccCCEEEecCC
Q 020259          122 KDISFYNDFNIIVLGLD  138 (328)
Q Consensus       122 ~~~~~~~~~dvVi~~~d  138 (328)
                      ...+.++++|+++.|+.
T Consensus        69 ~~~~ai~~adv~~I~Vp   85 (185)
T PF03721_consen   69 DIEEAIKDADVVFICVP   85 (185)
T ss_dssp             EHHHHHHH-SEEEE---
T ss_pred             hhhhhhhccceEEEecC
Confidence            12344688999988865

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=88.28  E-value=2.1  Score=38.12  Aligned_cols=34  Identities=35%  Similarity=0.405  Sum_probs=29.7

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++++++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~   44 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN   44 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence            578899998 68999999999999998 78888754

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=88.28  E-value=3.9  Score=38.20  Aligned_cols=34  Identities=29%  Similarity=0.316  Sum_probs=29.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ...+|+|.|+|++|..++..+...|..+++.+|.
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~  196 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDP  196 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            4679999999999999999999999976777764

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=88.20  E-value=0.53  Score=37.18  Aligned_cols=27  Identities=30%  Similarity=0.445  Sum_probs=18.5

Q ss_pred             cCChHHHHHHHHHHHh----CCCeEEEEeCC
Q 020259           47 GAGGLGCELLKDLALS----GFKNLEVIDMD   73 (328)
Q Consensus        47 G~gglG~evaknL~l~----Gvg~itlvD~d   73 (328)
                      |+|.+|..+++.|...    ++.-..|.|.+
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~   31 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS   31 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESS
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECC
Confidence            8999999999999876    44444555544

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>TIGR02028 ChlP geranylgeranyl reductase

Probab=88.19  E-value=0.63  Score=45.14  Aligned_cols=31  Identities=29%  Similarity=0.485  Sum_probs=28.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +|+|||+|..|+..|..|++.|+ ++.|+|..
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~-~V~llE~~   32 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGI-QTFLLERK   32 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCC-cEEEEecC
Confidence            69999999999999999999998 68898864

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK07326 short chain dehydrogenase; Provisional

Probab=88.11  E-value=3.3  Score=36.34  Aligned_cols=33  Identities=18%  Similarity=0.425  Sum_probs=27.4

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.+|+|+| .|++|.++++.|+..|. ++.+++.
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r   38 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITAR   38 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeC
Confidence            357899998 58999999999999998 5777653

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=88.09  E-value=2.8  Score=44.26  Aligned_cols=34  Identities=26%  Similarity=0.500  Sum_probs=30.9

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...+|+|||+|..|...|..|++.|. +++++|..
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~  463 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEAL  463 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            46789999999999999999999998 79999964

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=87.99  E-value=0.7  Score=48.00  Aligned_cols=33  Identities=24%  Similarity=0.441  Sum_probs=30.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..|+|||.|-+|+.+|..|++.|. +++|+|.+.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            589999999999999999999998 699999874

>TIGR00518 alaDH alanine dehydrogenase

Probab=87.98  E-value=0.77  Score=44.24  Aligned_cols=34  Identities=21%  Similarity=0.388  Sum_probs=30.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...+|+|+|+|.+|..+++.+...|+ +++++|.+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~  199 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN  199 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            36789999999999999999999999 69999854

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PLN00016 RNA-binding protein; Provisional

Probab=87.94  E-value=2.8  Score=40.14  Aligned_cols=35  Identities=26%  Similarity=0.470  Sum_probs=29.1

Q ss_pred             cCCcEEEE----c-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVV----G-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~Vlii----G-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +..+|+|+    | .|-+|+.+++.|...|. ++++++.+.
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~   90 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGK   90 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCC
Confidence            35789999    7 58899999999999996 788887543

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=87.92  E-value=0.93  Score=46.00  Aligned_cols=36  Identities=22%  Similarity=0.531  Sum_probs=32.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      +..|+|||.|.+|+.+|..|++.|. +++|+|...+.
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~~   41 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDIA   41 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCCC
Confidence            5789999999999999999999998 89999976553

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=87.87  E-value=1.3  Score=39.74  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=29.6

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ++.+++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~   40 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKP   40 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence            477899998 69999999999999997 688877544

>PRK07236 hypothetical protein; Provisional

Probab=87.87  E-value=0.74  Score=44.25  Aligned_cols=35  Identities=20%  Similarity=0.233  Sum_probs=31.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +..+|+|||+|..|..+|..|.+.|+ +++|+|...
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   39 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRRAGW-DVDVFERSP   39 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            46789999999999999999999999 699999654

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=87.86  E-value=3.8  Score=36.75  Aligned_cols=33  Identities=21%  Similarity=0.518  Sum_probs=27.5

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVI   70 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlv   70 (328)
                      .| ++++++|.| .+|+|.++++.|+..|. ++.++
T Consensus         5 ~l-~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~   38 (260)
T PRK08416          5 EM-KGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFT   38 (260)
T ss_pred             cc-CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEE
Confidence            36 578888888 68999999999999998 56665

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=87.85  E-value=2.4  Score=41.66  Aligned_cols=88  Identities=16%  Similarity=0.169  Sum_probs=56.6

Q ss_pred             cEEEEcCChH-HHHHHHHHHH----hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHH-HHHHhhCCCcEEEEE
Q 020259           42 RILVVGAGGL-GCELLKDLAL----SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA-KRVMERVSGVNIVPH  115 (328)
Q Consensus        42 ~VliiG~ggl-G~evaknL~l----~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~-~~l~~lnp~v~v~~~  115 (328)
                      ||.|||+|+. .-++++.|+.    ..+++|+|+|-|.=   .+             ..+..++ +.+++..+.++++..
T Consensus         2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~---Rl-------------~~v~~l~~~~~~~~g~~~~v~~t   65 (425)
T cd05197           2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEE---RL-------------DIILTIAKRYVEEVGADIKFEKT   65 (425)
T ss_pred             EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHH---HH-------------HHHHHHHHHHHHhhCCCeEEEEe
Confidence            7999999985 3366777773    44589999995531   11             1133333 344556777777664


Q ss_pred             ecccCCcchhhhccCCEEEec--CCCHHHHHHHHHHH
Q 020259          116 FCRIEDKDISFYNDFNIIVLG--LDSIEARSYINAVA  150 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~--~d~~~~~~~l~~~~  150 (328)
                      +.     ..+-++++|.||++  +...+.|..-.++.
T Consensus        66 tD-----~~~Al~gADfVi~~irvGg~~~r~~De~Ip   97 (425)
T cd05197          66 MD-----LEDAIIDADFVINQFRVGGLTYREKDEQIP   97 (425)
T ss_pred             CC-----HHHHhCCCCEEEEeeecCChHHHHHHHhHH
Confidence            33     46778999999998  55666666444555

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=87.83  E-value=3.5  Score=39.25  Aligned_cols=21  Identities=24%  Similarity=0.358  Sum_probs=18.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHH
Q 020259           41 ARILVVGAGGLGCELLKDLAL   61 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l   61 (328)
                      -||.|+|+|.+|..+++.+..
T Consensus         2 ikVaI~G~GrIGr~va~al~~   22 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAA   22 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhc
Confidence            379999999999999998875

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=87.78  E-value=0.86  Score=43.95  Aligned_cols=34  Identities=18%  Similarity=0.372  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHh--CCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALS--GFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~--Gvg~itlvD~d~   74 (328)
                      ...|+|||+|.+|+.+|..|++.  |. +++|+|...
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~   37 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES   37 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence            36899999999999999999998  86 899999764

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=87.76  E-value=2.4  Score=40.41  Aligned_cols=31  Identities=16%  Similarity=0.307  Sum_probs=26.2

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEE
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVI   70 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlv   70 (328)
                      ..+|+|+| .|-+|.++++.|.....-+|+.+
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~   34 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWFEVTAL   34 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCceEEEE
Confidence            57899998 89999999999987666677776

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=87.71  E-value=1.1  Score=38.72  Aligned_cols=82  Identities=21%  Similarity=0.244  Sum_probs=47.3

Q ss_pred             cEEEEcCChHHHH-HHHHHHH----hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHH-HHHhhCCCcEEEEE
Q 020259           42 RILVVGAGGLGCE-LLKDLAL----SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAK-RVMERVSGVNIVPH  115 (328)
Q Consensus        42 ~VliiG~gglG~e-vaknL~l----~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~-~l~~lnp~v~v~~~  115 (328)
                      ||.+||+|++-.. .+..++.    ...++|.|+|-|.      .|.          ..+..+++ .+++.++.++++..
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~------~RL----------~~~~~~~~~~~~~~~~~~~v~~t   64 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDE------ERL----------EIVERLARRMVEEAGADLKVEAT   64 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCH------HHH----------HHHHHHHHHHHHHCTTSSEEEEE
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCH------HHH----------HHHHHHHHHHHHhcCCCeEEEEe
Confidence            6899999987654 3333332    2335899988554      111          12333344 34556778887664


Q ss_pred             ecccCCcchhhhccCCEEEecC--CCHHHHH
Q 020259          116 FCRIEDKDISFYNDFNIIVLGL--DSIEARS  144 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~--d~~~~~~  144 (328)
                      +.     ..+-++++|.||++.  ...+.|.
T Consensus        65 td-----~~eAl~gADfVi~~irvGg~~~r~   90 (183)
T PF02056_consen   65 TD-----RREALEGADFVINQIRVGGLEARE   90 (183)
T ss_dssp             SS-----HHHHHTTESEEEE---TTHHHHHH
T ss_pred             CC-----HHHHhCCCCEEEEEeeecchHHHH
Confidence            33     466789999999983  3444443

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=87.70  E-value=3.9  Score=38.67  Aligned_cols=32  Identities=25%  Similarity=0.302  Sum_probs=26.7

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +.+|+|.| +|.+|+.+++.|+..|. ++++++.
T Consensus        10 ~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r   42 (353)
T PLN02896         10 TGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLR   42 (353)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            67899999 68899999999999997 5666553

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=87.69  E-value=0.83  Score=44.63  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=31.0

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ...+|+|+|+|.+|..+++.+...|. +++++|.+.
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~  235 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP  235 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence            47799999999999999999999999 788888543

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=87.67  E-value=4.6  Score=39.09  Aligned_cols=33  Identities=27%  Similarity=0.526  Sum_probs=27.5

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +..+|+|+| .|.+|..+++.|...|. ++++++.
T Consensus        59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R   92 (390)
T PLN02657         59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAR   92 (390)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEe
Confidence            356899998 59999999999999997 6777653

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.63  E-value=4.1  Score=37.71  Aligned_cols=84  Identities=21%  Similarity=0.284  Sum_probs=55.2

Q ss_pred             HHHHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCc
Q 020259           32 ELRDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV  110 (328)
Q Consensus        32 ~~q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v  110 (328)
                      ....++ .++-|+|-| ..|+|.++|+.|+..|.+-+.++                +    -..+-+.+++.+++.-|.-
T Consensus         5 ~~~e~~-~~kvVvITGASsGIG~~lA~~la~~G~~l~lva----------------r----~~rrl~~v~~~l~~~~~~~   63 (282)
T KOG1205|consen    5 LFMERL-AGKVVLITGASSGIGEALAYELAKRGAKLVLVA----------------R----RARRLERVAEELRKLGSLE   63 (282)
T ss_pred             ccHHHh-CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEee----------------h----hhhhHHHHHHHHHHhCCcC
Confidence            445678 588888889 56999999999999999544432                1    1124555556666654444


Q ss_pred             EEEEEecccCCcc---------hhhhccCCEEEec
Q 020259          111 NIVPHFCRIEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       111 ~v~~~~~~~~~~~---------~~~~~~~dvVi~~  136 (328)
                      ++.....++.+..         ...+.+.|++|+.
T Consensus        64 ~v~~~~~Dvs~~~~~~~~~~~~~~~fg~vDvLVNN   98 (282)
T KOG1205|consen   64 KVLVLQLDVSDEESVKKFVEWAIRHFGRVDVLVNN   98 (282)
T ss_pred             ccEEEeCccCCHHHHHHHHHHHHHhcCCCCEEEec
Confidence            6777777776532         1345678887764

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=87.62  E-value=0.93  Score=38.37  Aligned_cols=36  Identities=28%  Similarity=0.458  Sum_probs=29.0

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      ..++++|+|.|-+|.-+|+.|...|. ++++.|-|.+
T Consensus        22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi   57 (162)
T PF00670_consen   22 AGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPI   57 (162)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred             CCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChH
Confidence            57889999999999999999999997 8999987763

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=87.60  E-value=3.9  Score=38.97  Aligned_cols=34  Identities=26%  Similarity=0.440  Sum_probs=29.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ...+|+|.|+|++|..++..+...|++++..+|.
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~  224 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL  224 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence            3578999999999999998888999977877763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=87.58  E-value=0.84  Score=43.66  Aligned_cols=36  Identities=28%  Similarity=0.371  Sum_probs=31.9

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      +..+|+|||+|..|..+|..|++.|+ +++|+|.+..
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~   39 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP   39 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence            35689999999999999999999998 7999996654

>PRK08013 oxidoreductase; Provisional

Probab=87.56  E-value=0.77  Score=44.42  Aligned_cols=34  Identities=21%  Similarity=0.383  Sum_probs=30.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ...|+|||+|..|..+|-.|++.|+ +++|+|...
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~-~v~viE~~~   36 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGL-RVAVLEQRV   36 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCC-EEEEEeCCC
Confidence            5689999999999999999999998 799999654

>PRK06398 aldose dehydrogenase; Validated

Probab=87.55  E-value=2.6  Score=37.86  Aligned_cols=73  Identities=18%  Similarity=0.269  Sum_probs=45.4

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChH-HHHHHHHHHhhCCCcEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK-AEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~K-a~a~~~~l~~lnp~v~v~~  114 (328)
                      | ++.+++|.| .||+|.++++.|+..|. ++.+++.+.-...    ...+-..|+.... .+.+.+.+.+....+.+-.
T Consensus         4 l-~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~----~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li   77 (258)
T PRK06398          4 L-KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN----DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILV   77 (258)
T ss_pred             C-CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC----ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            5 478899998 67999999999999997 7888776542221    1112344665543 3444555554444444444


Q ss_pred             E
Q 020259          115 H  115 (328)
Q Consensus       115 ~  115 (328)
                      +
T Consensus        78 ~   78 (258)
T PRK06398         78 N   78 (258)
T ss_pred             E
Confidence            3

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=87.53  E-value=0.97  Score=44.71  Aligned_cols=43  Identities=19%  Similarity=0.206  Sum_probs=35.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHh--CCCeEEEEeCCccCccCCccc
Q 020259           40 YARILVVGAGGLGCELLKDLALS--GFKNLEVIDMDRIEVSNLNRQ   83 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~--Gvg~itlvD~d~v~~~nl~r~   83 (328)
                      +..|+|||.|-+|..+|..|++.  |. +++|+|.+.+-...-+|+
T Consensus        24 ~~DVvIIGgGi~Gls~A~~La~~~~G~-~V~vlE~~~~g~GaSgrn   68 (460)
T TIGR03329        24 QADVCIVGGGFTGLWTAIMIKQQRPAL-DVLVLEADLCGAGASGRN   68 (460)
T ss_pred             eeCEEEECCCHHHHHHHHHHHHhCCCC-eEEEEeCCcccccccccc
Confidence            47899999999999999999998  64 899999888754444444

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK06184 hypothetical protein; Provisional

Probab=87.50  E-value=0.72  Score=46.12  Aligned_cols=34  Identities=32%  Similarity=0.528  Sum_probs=30.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +...|+|||+|..|..+|-.|++.|+ +++|+|..
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi-~v~viE~~   35 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGV-SFRLIEKA   35 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            36789999999999999999999999 69999854

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=87.49  E-value=5.5  Score=37.66  Aligned_cols=34  Identities=29%  Similarity=0.345  Sum_probs=29.2

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +..+|+|.| +|=+|+.+++.|...|. +++.+|..
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~   48 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF   48 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            468999999 59999999999999996 78888743

>PLN02463 lycopene beta cyclase

Probab=87.48  E-value=0.86  Score=45.07  Aligned_cols=52  Identities=19%  Similarity=0.227  Sum_probs=40.2

Q ss_pred             cCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           18 RAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        18 ~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+..+-.+..+....+    ....|+|||+|..|..+|..|+..|+ +++++|...
T Consensus        10 ~~~~~~~~~~~~~~~~~----~~~DVvIVGaGpAGLalA~~La~~Gl-~V~liE~~~   61 (447)
T PLN02463         10 KKENLDFELPRFDPSKS----RVVDLVVVGGGPAGLAVAQQVSEAGL-SVCCIDPSP   61 (447)
T ss_pred             ccccccccccCCCCccc----cCceEEEECCCHHHHHHHHHHHHCCC-eEEEeccCc
Confidence            34455555666665333    35689999999999999999999998 799999754

>PRK15076 alpha-galactosidase; Provisional

Probab=87.45  E-value=1.4  Score=43.42  Aligned_cols=77  Identities=16%  Similarity=0.221  Sum_probs=43.7

Q ss_pred             CcEEEEcCChHHHHHHH--HHH-HhCC--CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHH-HHHHhhCCCcEEEE
Q 020259           41 ARILVVGAGGLGCELLK--DLA-LSGF--KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA-KRVMERVSGVNIVP  114 (328)
Q Consensus        41 ~~VliiG~gglG~evak--nL~-l~Gv--g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~-~~l~~lnp~v~v~~  114 (328)
                      .+|.|||+|++|...+-  .++ ..+.  ..++|+|-|.=      +.          .+++++. ..+....+.++++.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~e------r~----------~~~~~l~~~~~~~~~~~~~i~~   65 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPE------RL----------EESEIVARKLAESLGASAKITA   65 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHH------HH----------HHHHHHHHHHHHhcCCCeEEEE
Confidence            47999999999865544  554 2223  38999984431      00          0122222 23333444555554


Q ss_pred             EecccCCcchhhhccCCEEEecCC
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      .+.     ..+.++++|+||.+..
T Consensus        66 ttD-----~~eal~dADfVv~ti~   84 (431)
T PRK15076         66 TTD-----RREALQGADYVINAIQ   84 (431)
T ss_pred             ECC-----HHHHhCCCCEEeEeee
Confidence            221     2456789999988844

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=87.38  E-value=0.83  Score=43.91  Aligned_cols=35  Identities=20%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ....|+|||+|..|..+|-.|++.|+ +++|+|...
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~-~v~liE~~~   39 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGL-SVALVEGRE   39 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCC-EEEEEeCCC
Confidence            35789999999999999999999999 699999764

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=87.38  E-value=3.2  Score=31.69  Aligned_cols=70  Identities=16%  Similarity=0.119  Sum_probs=46.5

Q ss_pred             hHHHHHHHHHHhhCCCcEEEEE--ecccCCc---chhhhccCCEEEecCC--CHHHHHHHHHHHHHhhhccCCCCccccc
Q 020259           94 PKAEVAAKRVMERVSGVNIVPH--FCRIEDK---DISFYNDFNIIVLGLD--SIEARSYINAVACSFLEYETDDKPREET  166 (328)
Q Consensus        94 ~Ka~a~~~~l~~lnp~v~v~~~--~~~~~~~---~~~~~~~~dvVi~~~d--~~~~~~~l~~~~~~l~~~~~~~~~~~~~  166 (328)
                      .+.....+.+++.  +.+...+  .......   -+..++++|+||..+|  +......+-+.|             ++.
T Consensus        10 ~~~~~~~~~~~~~--G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~a-------------kk~   74 (97)
T PF10087_consen   10 DRERRYKRILEKY--GGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAA-------------KKY   74 (97)
T ss_pred             ccHHHHHHHHHHc--CCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHH-------------HHc
Confidence            3455566777775  4555555  2222222   2556788999988777  556677777788             688


Q ss_pred             cceEEEeeecce
Q 020259          167 IKPMVDGGTEGF  178 (328)
Q Consensus       167 ~~p~i~~~~~G~  178 (328)
                      ++|++.+...|.
T Consensus        75 ~ip~~~~~~~~~   86 (97)
T PF10087_consen   75 GIPIIYSRSRGV   86 (97)
T ss_pred             CCcEEEECCCCH
Confidence            999998876554

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=87.37  E-value=2.9  Score=37.31  Aligned_cols=32  Identities=34%  Similarity=0.443  Sum_probs=27.3

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      .+.+++|.| .|++|.++++.|+..|. ++.+.|
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~   40 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIIND   40 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEc
Confidence            467899998 68999999999999997 677765

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=87.36  E-value=0.85  Score=44.10  Aligned_cols=32  Identities=34%  Similarity=0.531  Sum_probs=29.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +|+|||.|-+|+.+|..|+..|. +++|+|.+.
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            69999999999999999999997 799999874

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=87.34  E-value=3.6  Score=39.05  Aligned_cols=98  Identities=13%  Similarity=0.120  Sum_probs=0.0

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ...+|+|||+|..|.++|..|.+.|. +++++|.+..--.-+...  +..............+++.+.+=.+........
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~~~gg~~~~~--~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~v~~   93 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLPEPGGLMLFG--IPEFRIPIERVREGVKELEEAGVVFHTRTKVCC   93 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCCCceeeec--CcccccCHHHHHHHHHHHHhCCeEEecCcEEee


Q ss_pred             cCC--------------cchhhhccCCEEEecCCC
Q 020259          119 IED--------------KDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~--------------~~~~~~~~~dvVi~~~d~  139 (328)
                      ...              ........+|.||.|+..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs  128 (352)
T PRK12770         94 GEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGT  128 (352)
T ss_pred             ccccccccccccccccCCHHHHHhhCCEEEEEeCC

>PRK08278 short chain dehydrogenase; Provisional

Probab=87.29  E-value=4.3  Score=36.84  Aligned_cols=34  Identities=18%  Similarity=0.325  Sum_probs=29.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++++++|.| .|++|.++++.|+..|. ++.+++..
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~   39 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT   39 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            467899998 69999999999999997 78887754

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=87.28  E-value=15  Score=33.20  Aligned_cols=34  Identities=32%  Similarity=0.403  Sum_probs=26.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ...+|+-+|||. |. ++..++..|.++++-+|.+.
T Consensus       119 ~~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~  152 (250)
T PRK00517        119 PGKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDP  152 (250)
T ss_pred             CCCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCH
Confidence            578999999997 64 44567778888899998654

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=87.28  E-value=2.5  Score=37.77  Aligned_cols=33  Identities=27%  Similarity=0.453  Sum_probs=28.2

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      | ++.+|+|.| .|++|.++++.|+..|. ++.+++
T Consensus         9 l-~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~   42 (255)
T PRK06113          9 L-DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSD   42 (255)
T ss_pred             c-CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEe
Confidence            5 578899998 78999999999999997 566665

>PRK08226 short chain dehydrogenase; Provisional

Probab=87.26  E-value=2.9  Score=37.39  Aligned_cols=36  Identities=28%  Similarity=0.444  Sum_probs=30.0

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +| ++.+++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus         3 ~~-~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~   39 (263)
T PRK08226          3 KL-TGKTALITGALQGIGEGIARVFARHGA-NLILLDIS   39 (263)
T ss_pred             CC-CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence            35 578899998 88999999999999998 58887643

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=87.23  E-value=3.5  Score=41.16  Aligned_cols=34  Identities=24%  Similarity=0.410  Sum_probs=30.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|||+|..|.++|..|.+.|. +++++|...
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~~  176 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERED  176 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence            4799999999999999999999997 799998554

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=87.21  E-value=2.7  Score=37.80  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=27.0

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ++++++|.| .|++|.++++.|+..|. ++.+.+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~   41 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFND   41 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEe
Confidence            467899998 68999999999999997 577765

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.20  E-value=2.3  Score=37.27  Aligned_cols=30  Identities=37%  Similarity=0.375  Sum_probs=25.3

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEE
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEV   69 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itl   69 (328)
                      +..+|+|+| .|++|.++++.|...|.. +++
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~~-v~~   35 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGAD-VVV   35 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCe-EEE
Confidence            457899998 799999999999999984 444

>PRK07677 short chain dehydrogenase; Provisional

Probab=87.19  E-value=2.8  Score=37.34  Aligned_cols=32  Identities=22%  Similarity=0.450  Sum_probs=27.1

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++++|.| .|++|..+++.|+..|. ++.++|.+
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~   34 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT   34 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5688888 67899999999999998 78887754

>PRK12744 short chain dehydrogenase; Provisional

Probab=87.17  E-value=3.5  Score=36.84  Aligned_cols=31  Identities=32%  Similarity=0.492  Sum_probs=25.7

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEE
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEV   69 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itl   69 (328)
                      ++.+++|.| .|++|.++++.|+..|...+.+
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i   38 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI   38 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence            467899998 8899999999999999853433

>PRK12937 short chain dehydrogenase; Provisional

Probab=87.11  E-value=2.9  Score=36.85  Aligned_cols=32  Identities=28%  Similarity=0.497  Sum_probs=26.6

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ++++|+|.| .|++|..+++.|+..|. ++.++.
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~   36 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNY   36 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEec
Confidence            467899998 69999999999999998 455543

>PRK08244 hypothetical protein; Provisional

Probab=87.08  E-value=0.86  Score=45.43  Aligned_cols=33  Identities=30%  Similarity=0.505  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +..|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~-~v~viEr~   34 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGV-KTCVIERL   34 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            4689999999999999999999999 78999854

>PRK06270 homoserine dehydrogenase; Provisional

Probab=87.07  E-value=3.7  Score=39.08  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHh
Q 020259           40 YARILVVGAGGLGCELLKDLALS   62 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~   62 (328)
                      .-+|.|+|+|.+|..+++.|...
T Consensus         2 ~i~V~IiG~G~VG~~~~~~L~~~   24 (341)
T PRK06270          2 EMKIALIGFGGVGQGVAELLAEK   24 (341)
T ss_pred             eEEEEEECCCHHHHHHHHHHHHh
Confidence            35799999999999999999765

>PRK08264 short chain dehydrogenase; Validated

Probab=87.00  E-value=1  Score=39.69  Aligned_cols=36  Identities=22%  Similarity=0.340  Sum_probs=30.9

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+.+|+|.| .|++|.++++.|+..|..++.+++.+.
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~   41 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP   41 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence            468899998 699999999999999987788887543

>PRK07109 short chain dehydrogenase; Provisional

Probab=86.98  E-value=3.7  Score=38.75  Aligned_cols=33  Identities=15%  Similarity=0.342  Sum_probs=28.2

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.+|+|.| .||+|.++++.|+..|. ++.+++.
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R   40 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLAR   40 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            467899998 59999999999999997 6888763

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=86.96  E-value=0.83  Score=44.20  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|+|||+|..|..+|-.|++.|+ +++|+|..
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~-~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDL-RIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            5689999999999999999999998 68999974

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=86.93  E-value=0.77  Score=39.48  Aligned_cols=34  Identities=29%  Similarity=0.559  Sum_probs=28.9

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      .+ ++++|+|||.|-.|.+++.+|+..| .+++++=
T Consensus       164 ~~-~~k~V~VVG~G~SA~d~a~~l~~~g-~~V~~~~  197 (203)
T PF13738_consen  164 DF-KGKRVVVVGGGNSAVDIAYALAKAG-KSVTLVT  197 (203)
T ss_dssp             GC-TTSEEEEE--SHHHHHHHHHHTTTC-SEEEEEE
T ss_pred             hc-CCCcEEEEcChHHHHHHHHHHHhhC-CEEEEEe
Confidence            46 5899999999999999999999999 7999873

...

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=86.91  E-value=0.89  Score=42.75  Aligned_cols=33  Identities=33%  Similarity=0.584  Sum_probs=29.3

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCc
Q 020259           42 RILVVGA-GGLGCELLKDLALSGF-KNLEVIDMDR   74 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~Gv-g~itlvD~d~   74 (328)
                      ||.|||+ |.+|+.+|-.|+..|+ .+|.|+|-..
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG   35 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            6899999 9999999999999998 5799999644

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=86.85  E-value=2.6  Score=36.93  Aligned_cols=34  Identities=29%  Similarity=0.436  Sum_probs=28.7

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++.+|+|.| .|++|.++++.|+..|.. +++++.+
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~   38 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN   38 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            457899998 599999999999999985 7887654

>PRK05717 oxidoreductase; Validated

Probab=86.84  E-value=1.9  Score=38.53  Aligned_cols=34  Identities=29%  Similarity=0.440  Sum_probs=29.0

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++++|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~   43 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD   43 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence            467899998 68999999999999996 78888754

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=86.84  E-value=0.75  Score=43.30  Aligned_cols=32  Identities=25%  Similarity=0.263  Sum_probs=27.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ++.+|.|||+|.+|..++++|..+|+ ++++.+
T Consensus         2 ~~kkIgiIG~G~mG~AiA~~L~~sG~-~Viv~~   33 (314)
T TIGR00465         2 KGKTVAIIGYGSQGHAQALNLRDSGL-NVIVGL   33 (314)
T ss_pred             CcCEEEEEeEcHHHHHHHHHHHHCCC-eEEEEE
Confidence            57899999999999999999999998 455443

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK06114 short chain dehydrogenase; Provisional

Probab=86.80  E-value=2.8  Score=37.42  Aligned_cols=34  Identities=26%  Similarity=0.498  Sum_probs=28.6

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      | ++..++|.| .||+|.++++.|+..|. ++.++|.
T Consensus         6 ~-~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r   40 (254)
T PRK06114          6 L-DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDL   40 (254)
T ss_pred             C-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            5 577888887 77999999999999997 6777764

>PLN02740 Alcohol dehydrogenase-like

Probab=86.79  E-value=5.1  Score=38.40  Aligned_cols=36  Identities=17%  Similarity=0.343  Sum_probs=30.5

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++...+|+|+|+|++|..++..+...|+.+++.+|.
T Consensus       196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~  231 (381)
T PLN02740        196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDI  231 (381)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence            434678999999999999999999999877888764

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=86.75  E-value=3.9  Score=37.44  Aligned_cols=30  Identities=30%  Similarity=0.584  Sum_probs=24.5

Q ss_pred             cEEEEc-CChHHHHHHHHHHH-hCCCeEEEEe
Q 020259           42 RILVVG-AGGLGCELLKDLAL-SGFKNLEVID   71 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l-~Gvg~itlvD   71 (328)
                      +|.|+| +|.+|..+++.+.. .++.=+.++|
T Consensus         3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d   34 (266)
T TIGR00036         3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFE   34 (266)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence            799999 59999999999985 5665556666

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=86.68  E-value=0.55  Score=49.40  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=30.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|..|+.||..++.+|+ .++++|.+.
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~  368 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATP  368 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCH
Confidence            579999999999999999999998 799999554

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=86.62  E-value=0.98  Score=43.49  Aligned_cols=31  Identities=23%  Similarity=0.421  Sum_probs=28.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .|+|||+|..|+..|..|++.|. +++|+|..
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~-~V~l~E~~   32 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGI-ETILLERA   32 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            59999999999999999999998 68999876

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK05855 short chain dehydrogenase; Validated

Probab=86.62  E-value=2.5  Score=42.51  Aligned_cols=41  Identities=22%  Similarity=0.284  Sum_probs=32.6

Q ss_pred             cHHHHHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           30 GTELRDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        30 G~~~q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +...+..+ .+.+++|+| .||+|.++++.|+..|. ++.+++.
T Consensus       306 ~~~~~~~~-~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r  347 (582)
T PRK05855        306 VGRPRGPF-SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDI  347 (582)
T ss_pred             hccccccC-CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            33444567 578899998 59999999999999998 4777763

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=86.58  E-value=3.5  Score=37.01  Aligned_cols=75  Identities=20%  Similarity=0.356  Sum_probs=44.8

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChH-HHHHHHHHHhhCCCcEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK-AEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~K-a~a~~~~l~~lnp~v~v~~  114 (328)
                      | +++.++|.| .|++|.++++.|+..|. ++.++|.+.-.....  +..+-..|+.... .+.+.+.+.+..+.+.+-.
T Consensus         7 l-~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li   82 (266)
T PRK06171          7 L-QGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQHE--NYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLV   82 (266)
T ss_pred             C-CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCccccccC--ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            5 578889998 78999999999999998 677777554222111  1112234565433 3344444444444444443


Q ss_pred             E
Q 020259          115 H  115 (328)
Q Consensus       115 ~  115 (328)
                      +
T Consensus        83 ~   83 (266)
T PRK06171         83 N   83 (266)
T ss_pred             E
Confidence            3

>PRK08163 salicylate hydroxylase; Provisional

Probab=86.46  E-value=1  Score=43.23  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=30.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|||+|..|..+|..|.+.|+ +++|+|...
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~-~v~v~Er~~   37 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGI-KVKLLEQAA   37 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCC-cEEEEeeCc
Confidence            5689999999999999999999999 699998553

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=86.43  E-value=4.8  Score=37.38  Aligned_cols=31  Identities=19%  Similarity=0.312  Sum_probs=25.9

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      +.+|+|.| .|++|+.+++.|+..|. ++.+++
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~   36 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY-TINATV   36 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEE
Confidence            46799998 69999999999999997 566554

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=86.40  E-value=1.1  Score=41.76  Aligned_cols=34  Identities=24%  Similarity=0.401  Sum_probs=30.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..++|.|+|.|-+|.+.||..+.+|. .+||.|-+
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n  200 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLN  200 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCC-eeEEEecC
Confidence            57899999999999999999999997 79999843

>PRK07024 short chain dehydrogenase; Provisional

Probab=86.36  E-value=1.8  Score=38.78  Aligned_cols=33  Identities=21%  Similarity=0.481  Sum_probs=28.3

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~   35 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARR   35 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            45788887 88999999999999998 78888754

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=86.35  E-value=1.2  Score=46.01  Aligned_cols=38  Identities=24%  Similarity=0.473  Sum_probs=33.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSN   79 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~n   79 (328)
                      ..|+|||.|.+|+.+|..|++.|. +++|+|.+.+...-
T Consensus        72 ~DVvVIGGGi~Ga~~A~~lA~rGl-~V~LvE~~d~a~Gt  109 (627)
T PLN02464         72 LDVLVVGGGATGAGVALDAATRGL-RVGLVEREDFSSGT  109 (627)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccccCCCc
Confidence            579999999999999999999999 69999987654433

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=86.33  E-value=1  Score=43.52  Aligned_cols=34  Identities=26%  Similarity=0.427  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|||+|..|..+|-.|++.|+ +++|+|...
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   51 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQP   51 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCC
Confidence            4679999999999999999999998 799998654

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=86.32  E-value=7.2  Score=40.51  Aligned_cols=40  Identities=20%  Similarity=0.358  Sum_probs=30.3

Q ss_pred             HHHHHHHHcCCcEEEEc-CChHHHHHHHHHHHh-CCCeEEEEeC
Q 020259           31 TELRDDLQEYARILVVG-AGGLGCELLKDLALS-GFKNLEVIDM   72 (328)
Q Consensus        31 ~~~q~~Lr~~~~VliiG-~gglG~evaknL~l~-Gvg~itlvD~   72 (328)
                      ..+-..- ++.+|+|.| .|-+|+++++.|... |. +++.+|.
T Consensus       307 ~~~~~~~-~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-~V~~l~r  348 (660)
T PRK08125        307 KPACSAK-RRTRVLILGVNGFIGNHLTERLLRDDNY-EVYGLDI  348 (660)
T ss_pred             cchhhhh-cCCEEEEECCCchHHHHHHHHHHhCCCc-EEEEEeC
Confidence            3333444 478899999 699999999999986 55 7777774

>PRK07856 short chain dehydrogenase; Provisional

Probab=86.32  E-value=2.8  Score=37.32  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=29.9

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ++++++|.| .|++|.++++.|+..|. ++.++|.+.
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~   40 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRA   40 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            578889998 67999999999999998 788887654

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=86.28  E-value=0.92  Score=43.60  Aligned_cols=34  Identities=29%  Similarity=0.347  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|||+|..|..+|-.|++.|+ +++|+|...
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGR-SVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCC-cEEEEcCCC
Confidence            4589999999999999999999998 899999653

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=86.27  E-value=1  Score=43.36  Aligned_cols=33  Identities=27%  Similarity=0.487  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...|+|||+|.+|..+|-.|.+.|+ +++|+|..
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~-~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGL-DVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Confidence            4679999999999999999999997 79999987

>PRK08862 short chain dehydrogenase; Provisional

Probab=86.22  E-value=3.8  Score=36.30  Aligned_cols=33  Identities=24%  Similarity=0.247  Sum_probs=27.4

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +.++++|.| .+|+|.++++.|+..|. ++.+++.
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r   37 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQ   37 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcC
Confidence            467889998 66799999999999998 5777653

>PRK06932 glycerate dehydrogenase; Provisional

Probab=86.21  E-value=0.65  Score=43.71  Aligned_cols=78  Identities=17%  Similarity=0.138  Sum_probs=53.2

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      ..| ..++|.|||+|.+|.++|+-|.-.|. ++..+|...             ..+..              .+      
T Consensus       143 ~~l-~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~~-------------~~~~~--------------~~------  187 (314)
T PRK06932        143 TDV-RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHKG-------------ASVCR--------------EG------  187 (314)
T ss_pred             ccc-CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCc-------------ccccc--------------cc------
Confidence            468 69999999999999999999998888 566655210             00000              00      


Q ss_pred             EecccCCcchhhhccCCEEEecCC-CHHHHHHHHHHHHH
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVACS  152 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~~  152 (328)
                           ...-++.++++|+|+.++. +.+++..+|.....
T Consensus       188 -----~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~  221 (314)
T PRK06932        188 -----YTPFEEVLKQADIVTLHCPLTETTQNLINAETLA  221 (314)
T ss_pred             -----cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHH
Confidence                 0123677889999977754 67788888876543

>PRK06487 glycerate dehydrogenase; Provisional

Probab=86.20  E-value=1  Score=42.48  Aligned_cols=77  Identities=17%  Similarity=0.164  Sum_probs=54.1

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      ..| .+++|.|||+|.+|.++|+-|.-.|. ++..+|...            .....                   .   
T Consensus       144 ~~l-~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~~------------~~~~~-------------------~---  187 (317)
T PRK06487        144 VEL-EGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLPG------------RPARP-------------------D---  187 (317)
T ss_pred             ccc-CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC------------Ccccc-------------------c---
Confidence            358 69999999999999999999998887 677766421            00000                   0   


Q ss_pred             EecccCCcchhhhccCCEEEecCC-CHHHHHHHHHHHHH
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVACS  152 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~~  152 (328)
                         .  ..-+++++++|+|+.++. +.+++..+|.....
T Consensus       188 ---~--~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~  221 (317)
T PRK06487        188 ---R--LPLDELLPQVDALTLHCPLTEHTRHLIGARELA  221 (317)
T ss_pred             ---c--cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHh
Confidence               0  024567889999977744 67788888876644

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=86.18  E-value=5.9  Score=41.36  Aligned_cols=32  Identities=34%  Similarity=0.546  Sum_probs=27.4

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .++|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus       414 gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r  446 (676)
T TIGR02632       414 RRVAFVTGGAGGIGRETARRLAAEGA-HVVLADL  446 (676)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeC
Confidence            56788888 68999999999999997 7888774

>PLN02494 adenosylhomocysteinase

Probab=86.18  E-value=1.1  Score=44.28  Aligned_cols=36  Identities=19%  Similarity=0.298  Sum_probs=31.8

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      ...+|+|+|+|.+|..+|+.+...|. +++++|.|..
T Consensus       253 aGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~  288 (477)
T PLN02494        253 AGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPI  288 (477)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            57899999999999999999999998 6888886643

>PRK12743 oxidoreductase; Provisional

Probab=86.14  E-value=4.4  Score=36.24  Aligned_cols=31  Identities=23%  Similarity=0.282  Sum_probs=25.3

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ..+|+|.| .|++|.++++.|+..|. ++.+++
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~   33 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITW   33 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence            46788888 67999999999999998 555553

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=86.09  E-value=1.2  Score=45.02  Aligned_cols=31  Identities=29%  Similarity=0.491  Sum_probs=24.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      .+||+|||+|..|-..+|+|...|+ .+++++
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~-~~~~fE   31 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGL-EVTCFE   31 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT--EEEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-CCeEEe
Confidence            3689999999999999999999999 678887

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.09  E-value=1.1  Score=44.73  Aligned_cols=34  Identities=32%  Similarity=0.371  Sum_probs=31.0

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...+|+|+|+|+.|..+++.|...|. .+++.|.+
T Consensus        14 ~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~   47 (473)
T PRK00141         14 LSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN   47 (473)
T ss_pred             cCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            46889999999999999999999998 89999854

>PRK08507 prephenate dehydrogenase; Validated

Probab=85.99  E-value=1.2  Score=40.94  Aligned_cols=31  Identities=26%  Similarity=0.298  Sum_probs=26.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCC-eEEEEeC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFK-NLEVIDM   72 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg-~itlvD~   72 (328)
                      +|.|||+|.+|..+++.|...|.. +++.+|.
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~   33 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDH   33 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            699999999999999999999973 5776663

>CHL00194 ycf39 Ycf39; Provisional

Probab=85.98  E-value=8.4  Score=35.84  Aligned_cols=29  Identities=24%  Similarity=0.603  Sum_probs=25.3

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           42 RILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      +|+|.| .|-+|+.+++.|...|. +++.++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~   31 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLV   31 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEE
Confidence            699999 59999999999999997 677765

>PRK12746 short chain dehydrogenase; Provisional

Probab=85.98  E-value=2.6  Score=37.45  Aligned_cols=33  Identities=27%  Similarity=0.379  Sum_probs=27.0

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVI   70 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlv   70 (328)
                      +| ++.+|+|.| .|++|.++++.|+..|. ++.+.
T Consensus         3 ~~-~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~   36 (254)
T PRK12746          3 NL-DGKVALVTGASRGIGRAIAMRLANDGA-LVAIH   36 (254)
T ss_pred             CC-CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEE
Confidence            35 578999998 88999999999999987 45443

>PRK06179 short chain dehydrogenase; Provisional

Probab=85.97  E-value=3.7  Score=36.92  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=28.4

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +.+|+|.| .|++|.++++.|+..|. ++++++.+.
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~   38 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNP   38 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            45688888 68999999999999997 588887654

>PLN02366 spermidine synthase

Probab=85.92  E-value=5.3  Score=37.52  Aligned_cols=33  Identities=30%  Similarity=0.711  Sum_probs=23.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~   74 (328)
                      ..+||+||+|+ |. +++.+++ .++.+++++|-|.
T Consensus        92 pkrVLiIGgG~-G~-~~rellk~~~v~~V~~VEiD~  125 (308)
T PLN02366         92 PKKVLVVGGGD-GG-VLREIARHSSVEQIDICEIDK  125 (308)
T ss_pred             CCeEEEEcCCc-cH-HHHHHHhCCCCCeEEEEECCH
Confidence            47899999885 22 3344444 4688999998654

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=85.91  E-value=1.1  Score=42.13  Aligned_cols=79  Identities=10%  Similarity=0.092  Sum_probs=53.4

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      ..| ..++|.|||+|.+|.++|+.+.-.|. ++..+|.....            .+.+                 +.   
T Consensus       141 ~~L-~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~~~------------~~~~-----------------~~---  186 (311)
T PRK08410        141 GEI-KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSGKN------------KNEE-----------------YE---  186 (311)
T ss_pred             ccc-CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCccc------------cccC-----------------ce---
Confidence            468 69999999999999999999988887 67777752100            0000                 00   


Q ss_pred             EecccCCcchhhhccCCEEEecCC-CHHHHHHHHHHHHH
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVACS  152 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~~  152 (328)
                           ...-+++++.+|+|+.++. +.+++..+++....
T Consensus       187 -----~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~  220 (311)
T PRK08410        187 -----RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELK  220 (311)
T ss_pred             -----eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHH
Confidence                 0013567788898866644 56777777776543

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=85.88  E-value=0.98  Score=43.26  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=30.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHh---CCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALS---GFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~---Gvg~itlvD~d   73 (328)
                      +..+|+|||+|..|..+|-.|.+.   |+ +++|+|..
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~-~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGL-PVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCC-EEEEEeCC
Confidence            357899999999999999999998   98 79999974

>PRK06753 hypothetical protein; Provisional

Probab=85.85  E-value=1.1  Score=42.55  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=29.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +|+|||+|..|..+|..|.+.|+ +++|++.+.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~-~v~v~E~~~   33 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGH-EVKVFEKNE   33 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            69999999999999999999999 589998554

>PRK08303 short chain dehydrogenase; Provisional

Probab=85.81  E-value=6.5  Score=36.60  Aligned_cols=35  Identities=29%  Similarity=0.328  Sum_probs=29.2

Q ss_pred             HHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | ++..++|.|+ +|+|.++++.|+..|. ++.+++.+
T Consensus         6 l-~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~   41 (305)
T PRK08303          6 L-RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS   41 (305)
T ss_pred             C-CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            5 5778888885 6999999999999997 78887754

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=85.74  E-value=2.5  Score=41.55  Aligned_cols=73  Identities=16%  Similarity=0.228  Sum_probs=42.3

Q ss_pred             cEEEEcCChHHHHHHH--HHHHh-CC--CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHH----HHHhhCCCcEE
Q 020259           42 RILVVGAGGLGCELLK--DLALS-GF--KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAK----RVMERVSGVNI  112 (328)
Q Consensus        42 ~VliiG~gglG~evak--nL~l~-Gv--g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~----~l~~lnp~v~v  112 (328)
                      +|.|||+|++|...+-  .++.. +.  .+++|+|.+.                   .+++....    .+....+..++
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~-------------------e~l~~~~~~~~~~~~~~~~~~~I   62 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDE-------------------ERLETVEILAKKIVEELGAPLKI   62 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCH-------------------HHHHHHHHHHHHHHHhcCCCeEE
Confidence            6999999999987554  45421 22  4899998443                   12222222    23333334444


Q ss_pred             EEEecccCCcchhhhccCCEEEecCC
Q 020259          113 VPHFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      ...+     ...+.++++|+||.+..
T Consensus        63 ~~tt-----D~~eal~~AD~Vi~ai~   83 (423)
T cd05297          63 EATT-----DRREALDGADFVINTIQ   83 (423)
T ss_pred             EEeC-----CHHHHhcCCCEEEEeeE
Confidence            4321     12456789999988864

linked to 3D####ucture

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=85.69  E-value=5.2  Score=34.12  Aligned_cols=58  Identities=28%  Similarity=0.405  Sum_probs=39.3

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      .++|+| .||+|.++++.|+..|..+|.++-...                .+..+.+...+.+++.  ..+|.....
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~----------------~~~~~~~~~i~~l~~~--g~~v~~~~~   60 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSG----------------APSAEAEAAIRELESA--GARVEYVQC   60 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG----------------GGSTTHHHHHHHHHHT--T-EEEEEE-
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCC----------------CccHHHHHHHHHHHhC--CCceeeecc
Confidence            578886 999999999999999999999874332                2334555667777765  445554433

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=85.68  E-value=5.4  Score=41.94  Aligned_cols=33  Identities=27%  Similarity=0.545  Sum_probs=28.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGF-KNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d   73 (328)
                      .+|.|||+|.+|..+++.|...|. .+++++|.+
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~   37 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRR   37 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            579999999999999999999995 368888753

>PRK06198 short chain dehydrogenase; Provisional

Probab=85.67  E-value=2.4  Score=37.83  Aligned_cols=36  Identities=28%  Similarity=0.420  Sum_probs=30.8

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      + ++++|+|.| .|++|..+++.|+..|..++.+++.+
T Consensus         4 ~-~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~   40 (260)
T PRK06198          4 L-DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN   40 (260)
T ss_pred             C-CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence            5 578899998 58999999999999998668888753

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=85.64  E-value=3.8  Score=39.65  Aligned_cols=86  Identities=21%  Similarity=0.195  Sum_probs=50.2

Q ss_pred             cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +..+|.|+|+ |.+|.|+++.|..-...+|+.+-.+               ...|+.        +...+|.+.-... .
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~---------------~saG~~--------i~~~~~~l~~~~~-~   92 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD---------------RKAGQS--------FGSVFPHLITQDL-P   92 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh---------------hhcCCC--------chhhCccccCccc-c
Confidence            3679999995 7899999999988755677776422               222321        1112222211000 0


Q ss_pred             ccCCcchhhhccCCEEEecCCCHHHHHHHHH
Q 020259          118 RIEDKDISFYNDFNIIVLGLDSIEARSYINA  148 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~  148 (328)
                      .+.+.....+++.|+|+.|+.+...+.++..
T Consensus        93 ~~~~~~~~~~~~~DvVf~Alp~~~s~~i~~~  123 (381)
T PLN02968         93 NLVAVKDADFSDVDAVFCCLPHGTTQEIIKA  123 (381)
T ss_pred             ceecCCHHHhcCCCEEEEcCCHHHHHHHHHH
Confidence            1112222334889999999988666665555

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=85.64  E-value=1.3  Score=44.03  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=32.7

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .| ...+|+|+|+|.+|..+|+.|...|. +++++|.|.
T Consensus       251 ~L-aGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp  287 (476)
T PTZ00075        251 MI-AGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP  287 (476)
T ss_pred             Cc-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            46 68999999999999999999999998 688887654

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=85.62  E-value=1.3  Score=40.22  Aligned_cols=33  Identities=27%  Similarity=0.448  Sum_probs=30.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      .|+|||+|..|..+|..|++.|+ +++++|.+..
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~   34 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSF   34 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            58999999999999999999999 7999997753

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=85.61  E-value=2.4  Score=40.69  Aligned_cols=64  Identities=28%  Similarity=0.377  Sum_probs=41.6

Q ss_pred             EEEEcCChHHHHHHHHH--HHhCCCeEEEEeCCccC--ccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           43 ILVVGAGGLGCELLKDL--ALSGFKNLEVIDMDRIE--VSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        43 VliiG~gglG~evaknL--~l~Gvg~itlvD~d~v~--~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      |+|||+|..|..+|..|  ...|. ++.|+|...-.  ..|-...  +-..+++.     ..+.+....+...|..
T Consensus         2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~~~~~~~~tW~--~~~~~~~~-----~~~~v~~~w~~~~v~~   69 (374)
T PF05834_consen    2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPKPPWPNDRTWC--FWEKDLGP-----LDSLVSHRWSGWRVYF   69 (374)
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCccccccCCcccc--cccccccc-----hHHHHheecCceEEEe
Confidence            79999999999999999  77776 89999976544  4444222  23334444     3334444445555444

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK06847 hypothetical protein; Provisional

Probab=85.53  E-value=1.2  Score=42.24  Aligned_cols=34  Identities=24%  Similarity=0.472  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|||+|..|..+|..|.+.|+ +++|+|...
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~-~v~v~E~~~   37 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGI-AVDLVEIDP   37 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            4679999999999999999999999 689998653

>PRK14031 glutamate dehydrogenase; Provisional

Probab=85.50  E-value=3.5  Score=40.64  Aligned_cols=36  Identities=25%  Similarity=0.213  Sum_probs=32.0

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | ++.+|+|.|.|-+|+..|+.|...|..-+.+-|.+
T Consensus       226 l-~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~  261 (444)
T PRK14031        226 L-KGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD  261 (444)
T ss_pred             c-CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            7 68999999999999999999999999777777743

>PRK07454 short chain dehydrogenase; Provisional

Probab=85.47  E-value=5  Score=35.36  Aligned_cols=33  Identities=24%  Similarity=0.513  Sum_probs=27.6

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+++|.| .|++|..+++.|+..|. ++.+++.+
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~   39 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW-DLALVARS   39 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            45788888 59999999999999998 78887743

>PRK08265 short chain dehydrogenase; Provisional

Probab=85.42  E-value=1.9  Score=38.82  Aligned_cols=35  Identities=26%  Similarity=0.457  Sum_probs=30.0

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      + ++.+++|.| .|++|.++++.|+..|. +++++|.+
T Consensus         4 ~-~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~   39 (261)
T PRK08265          4 L-AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID   39 (261)
T ss_pred             C-CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5 578899998 59999999999999998 78888754

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=85.38  E-value=1.2  Score=44.05  Aligned_cols=33  Identities=27%  Similarity=0.394  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...|+|||+|..|+..|..|++.|+ +++|+|..
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~-~VlllEr~   71 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGI-ETFLIERK   71 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-cEEEEecC
Confidence            5679999999999999999999998 68888865

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=85.29  E-value=4.5  Score=40.17  Aligned_cols=94  Identities=14%  Similarity=0.155  Sum_probs=59.2

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCC--CCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLF--RMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~--~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      ...+|.+||+|+-|-..+--|+++|+ .+|+++...-.   -++- .|  ..--+.+.=++-..+.|.+.+  +++....
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~~G~-~Vtv~e~~~~~---GGll-~yGIP~~kl~k~i~d~~i~~l~~~G--v~~~~~~  194 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSRAGH-DVTVFERVALD---GGLL-LYGIPDFKLPKDILDRRLELLERSG--VEFKLNV  194 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHhCCC-eEEEeCCcCCC---ceeE-EecCchhhccchHHHHHHHHHHHcC--eEEEEcc
Confidence            46899999999999999999999998 78887643321   1111 12  222223344556666777765  5554432


Q ss_pred             ccc-CCcchhhhccCCEEEecCCC
Q 020259          117 CRI-EDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       117 ~~~-~~~~~~~~~~~dvVi~~~d~  139 (328)
                      ..= +-..+++.+.||.|+.|+..
T Consensus       195 ~vG~~it~~~L~~e~Dav~l~~G~  218 (457)
T COG0493         195 RVGRDITLEELLKEYDAVFLATGA  218 (457)
T ss_pred             eECCcCCHHHHHHhhCEEEEeccc
Confidence            211 22246667888999887654

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=85.27  E-value=1.3  Score=42.67  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~-~v~v~E~~~   35 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGI-DSVVLERRS   35 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCC-CEEEEEcCC
Confidence            4789999999999999999999999 588888665

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=85.25  E-value=1.3  Score=42.65  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=30.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|||+|..|...|..|.+.|+ +++|+|...
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~   35 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQS   35 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            4689999999999999999999999 689998665

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PLN02256 arogenate dehydrogenase

Probab=85.17  E-value=1.4  Score=41.25  Aligned_cols=32  Identities=25%  Similarity=0.310  Sum_probs=28.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ..+|.|||+|.+|..+++.|...|. +++.+|.
T Consensus        36 ~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~   67 (304)
T PLN02256         36 KLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSR   67 (304)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            5689999999999999999999885 7888774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	328
1tt5_B	434	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		6e-88
2nvu_B	805	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		7e-88
1yov_B	444	Insights Into The Ubiquitin Transfer Cascade From T		8e-88
3gzn_B	463	Structure Of Nedd8-Activating Enzyme In Complex Wit		1e-87
3dbl_B	434	Structural Dissection Of A Gating Mechanism Prevent		7e-87
1r4m_B	431	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		8e-87
3dbr_B	434	Structural Dissection Of A Gating Mechanism Prevent		2e-86
3dbh_B	434	Structural Dissection Of A Gating Mechanism Prevent		4e-86
3kyc_B	660	Human Sumo E1 Complex With A Sumo1-Amp Mimic Length		2e-35
3kyd_B	551	Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mi		3e-35
1y8q_B	640	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		2e-34
4ii2_A	1001	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-25
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		8e-25
1jwb_B	249	Structure Of The Covalent Acyl-Adenylate Form Of Th		1e-11
3h5n_A	353	Crystal Structure Of E. Coli Mccb + Atp Length = 35		9e-11
3h5a_A	358	Crystal Structure Of E. Coli Mccb Length = 358		9e-11
1zud_1	251	Structure Of This-Thif Protein Complex Length = 251		4e-10
1zfn_A	253	Structural Analysis Of Escherichia Coli Thif Length		4e-10
1y8q_A	346	Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex		5e-09
3rui_A	340	Crystal Structure Of Atg7c-Atg8 Complex Length = 34		4e-08
4gsk_A	615	Crystal Structure Of An Atg7-Atg10 Crosslinked Comp		4e-08
3vh1_A	598	Crystal Structure Of Saccharomyces Cerevisiae Atg7		5e-08
3vh3_A	340	Crystal Structure Of Atg7ctd-Atg8 Complex Length =		5e-08
3t7e_A	344	Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E		5e-08
3vh2_A	616	Crystal Structure Of Saccharomyces Cerevisiae Atg7		6e-08
4gsl_A	615	Crystal Structure Of An Atg7-Atg3 Crosslinked Compl		6e-08
3gzn_A	534	Structure Of Nedd8-Activating Enzyme In Complex Wit		2e-05
2nvu_A	536	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		2e-05
1tt5_A	531	Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 I		2e-05
1yov_A	537	Insights Into The Ubiquitin Transfer Cascade From T		2e-05
1r4m_A	529	Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Com		2e-05
3guc_A	292	Human Ubiquitin-Activating Enzyme 5 In Complex With		1e-04

>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 434

Iteration: 1
 Score =  320 bits (820), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 155/299 (51%), Positives = 203/299 (67%), Gaps = 4/299 (1%)
Query: 19  AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
           +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct: 19  SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 78
Query: 79  NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
           NLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLD
Sbjct: 79  NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 138
Query: 139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
           SI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ 
Sbjct: 139 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 197
Query: 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
           L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ +++
Sbjct: 198 LYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 257
Query: 256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
           +RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct: 258 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 316

>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 805

Iteration: 1
 Score =  320 bits (820), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 155/299 (51%), Positives = 203/299 (67%), Gaps = 4/299 (1%)
Query: 19  AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
           +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct: 390 SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 449
Query: 79  NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
           NLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLD
Sbjct: 450 NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 509
Query: 139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
           SI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ 
Sbjct: 510 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 568
Query: 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
           L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ +++
Sbjct: 569 LYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 628
Query: 256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
           +RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct: 629 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 687

>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 444

Iteration: 1
 Score =  320 bits (819), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 155/299 (51%), Positives = 203/299 (67%), Gaps = 4/299 (1%)
Query: 19  AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
           +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct: 29  SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 88
Query: 79  NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
           NLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLD
Sbjct: 89  NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 148
Query: 139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
           SI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ 
Sbjct: 149 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 207
Query: 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
           L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ +++
Sbjct: 208 LYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 267
Query: 256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
           +RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct: 268 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 326

>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 463

Iteration: 1
 Score =  319 bits (818), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 155/299 (51%), Positives = 203/299 (67%), Gaps = 4/299 (1%)
Query: 19  AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
           +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct: 48  SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 107
Query: 79  NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
           NLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLD
Sbjct: 108 NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 167
Query: 139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
           SI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ 
Sbjct: 168 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 226
Query: 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
           L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ +++
Sbjct: 227 LYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 286
Query: 256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
           +RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct: 287 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 345

>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190wt-Nedd8ala72gln) Length = 434

Iteration: 1
 Score =  317 bits (812), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 154/299 (51%), Positives = 202/299 (67%), Gaps = 4/299 (1%)
Query: 19  AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
           +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct: 19  SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 78
Query: 79  NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
           NLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLD
Sbjct: 79  NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 138
Query: 139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
           SI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ 
Sbjct: 139 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 197
Query: 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
           L+PPQV FP+ T+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ +++
Sbjct: 198 LYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 257
Query: 256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
           +RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct: 258 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 316

>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 431

Iteration: 1
 Score =  317 bits (811), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 154/299 (51%), Positives = 202/299 (67%), Gaps = 4/299 (1%)
Query: 19  AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
           +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct: 16  SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 75
Query: 79  NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
           NLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLD
Sbjct: 76  NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 135
Query: 139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
           SI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI+PG+T C ECT+ 
Sbjct: 136 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLE 194
Query: 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
           L+PPQV FP+ T+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ +++
Sbjct: 195 LYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 254
Query: 256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
           +RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct: 255 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 313

>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190gln-Nedd8ala72arg) Length = 434

Iteration: 1
 Score =  315 bits (808), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 153/299 (51%), Positives = 202/299 (67%), Gaps = 4/299 (1%)
Query: 19  AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
           +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct: 19  SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 78
Query: 79  NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
           NLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLD
Sbjct: 79  NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 138
Query: 139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
           SI AR +IN +  S L YE D      +I P++DGGTEGFKG+A+VI+PG+T C ECT+ 
Sbjct: 139 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNAQVILPGMTACIECTLE 197
Query: 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
           L+PPQV FP+ T+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ +++
Sbjct: 198 LYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 257
Query: 256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
           +RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct: 258 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 316

>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1- Uba3arg190ala-Nedd8ala72arg) Length = 434

Iteration: 1
 Score =  314 bits (805), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 153/299 (51%), Positives = 201/299 (67%), Gaps = 4/299 (1%)
Query: 19  AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS 78
           +G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+ + VIDMD I+VS
Sbjct: 19  SGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVS 78
Query: 79  NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD 138
           NLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +FY  F+IIV GLD
Sbjct: 79  NLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLD 138
Query: 139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIW 198
           SI AR +IN +  S L YE D      +I P++DGGTEGFKG+A VI+PG+T C ECT+ 
Sbjct: 139 SIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNAAVILPGMTACIECTLE 197
Query: 199 LFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPDDPEHMQWVYSEAV 255
           L+PPQV FP+ T+A  PR   HCIEY  +++W +      G   D DDPEH+QW++ +++
Sbjct: 198 LYPPQVNFPMATIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSL 257
Query: 256 KRAELFGIPGVTYSLTQGVVKXXXXXXXXXXXXXXXXCALETLKIASGCSKTLSNYLTY 314
           +RA  + I GVTY LTQGVVK                CA E  KIA+     L+NYL +
Sbjct: 258 ERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVF 316

>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic Length = 660

Iteration: 1
 Score =  145 bits (367), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 23/225 (10%)
Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
            R+LVVGAGG+GCELLK+L L+GF ++++ID+D I+VSNLNRQFLF+ + VG+ KA+VA 
Sbjct: 38  GRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAK 97
Query: 101 KRVMERVSGVNIVPHFCRIEDKD--ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYET 158
           + V++     NIV +   I + D  + F+  F +++  LD+  AR+++N +  +      
Sbjct: 98  ESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLA------ 151
Query: 159 DDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTA 218
                     P+++ GT G+ G    I  GVT C+EC     P Q  FP CT+  TP   
Sbjct: 152 -------ADVPLIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPGCTIRNTPSEP 202
Query: 219 AHCIEYAHLI---KWDEVHSGKSFDPD--DPEHMQWVYSEAVKRA 258
            HCI +A  +    + E  + +   PD  DPE   W  +EA  RA
Sbjct: 203 IHCIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEARA 246

>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic Length = 551

Iteration: 1
 Score =  145 bits (367), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 23/225 (10%)
Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
            R+LVVGAGG+GCELLK+L L+GF ++++ID+D I+VSNLNRQFLF+ + VG+ KA+VA 
Sbjct: 20  GRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAK 79
Query: 101 KRVMERVSGVNIVPHFCRIEDKD--ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYET 158
           + V++     NIV +   I + D  + F+  F +++  LD+  AR+++N +  +      
Sbjct: 80  ESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMCLA------ 133
Query: 159 DDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTA 218
                     P+++ GT G+ G    I  GVT C+EC     P Q  FP CT+  TP   
Sbjct: 134 -------ADVPLIESGTAGYLGQVTTIKKGVTECYECHP--KPTQRTFPGCTIRNTPSEP 184
Query: 219 AHCIEYAHLI---KWDEVHSGKSFDPD--DPEHMQWVYSEAVKRA 258
            HCI +A  +    + E  + +   PD  DPE   W  +EA  RA
Sbjct: 185 IHCIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEARA 228

>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 640

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 23/225 (10%)
Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
            R+LVVGAGG+GCELLK+L L+GF ++++ID+D I+VSNLNRQFLF+ + VG+ KA+VA 
Sbjct: 18  GRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAK 77
Query: 101 KRVMERVSGVNIVPHFCRIEDKD--ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYET 158
           + V++     NIV +   I + D  + F+  F +++  LD+  AR+++N + C   +   
Sbjct: 78  ESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRM-CLAADV-- 134
Query: 159 DDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTA 218
                     P+++ GT G+ G    I  GVT C+EC     P Q  FP  T+  TP   
Sbjct: 135 ----------PLIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFPGATIRNTPSEP 182
Query: 219 AHCIEYAHLI---KWDEVHSGKSFDPD--DPEHMQWVYSEAVKRA 258
            HCI +A  +    + E  + +   PD  DPE   W  +EA  RA
Sbjct: 183 IHCIVWAKYLFNQLFGEEDADQEVSPDRADPE-AAWEPTEAEARA 226

>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 1001

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 111/209 (53%), Gaps = 28/209 (13%)
Query: 30  GTELRDDLQEYARILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDRIEVSNLNRQF 84
           G+E ++ +   +  LV GAG +GCE+LK+ A+ G       ++ V DMD IE SNLNRQF
Sbjct: 407 GSEFQEKIASLSTFLV-GAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIEKSNLNRQF 465
Query: 85  LFRMEDVGKPKAEVA--AKRVMERVSGVNIVPHFCRI--EDKDI---SFYNDFNIIVLGL 137
           LFR  DVGK K+E A  A  +M       I  +  R+  E + I    F+   +++   L
Sbjct: 466 LFRPRDVGKLKSECASTAVSIMNPSLTGKITSYQERVGPESEGIFGDEFFEKLSLVTNAL 525
Query: 138 DSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTI 197
           D++EAR Y++   C F E            KP+++ GT G KG+ +V++P +T  +  + 
Sbjct: 526 DNVEARMYVDR-RCVFFE------------KPLLESGTLGTKGNTQVVVPHLTESYGSS- 571
Query: 198 WLFPPQVKFPLCTLAETPRTAAHCIEYAH 226
              PP+  FP+CTL   P    H I +A 
Sbjct: 572 -QDPPEKSFPICTLKNFPNRIEHTIAWAR 599

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score =  110 bits (276), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/197 (36%), Positives = 107/197 (54%), Gaps = 27/197 (13%)
Query: 41  ARILVVGAGGLGCELLKDLALSGFKN-----LEVIDMDRIEVSNLNRQFLFRMEDVGKPK 95
           +++ +VG+G +GCE+LK+ AL G  +     + V D D IE SNLNRQFLFR +DVGK K
Sbjct: 426 SKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNK 485
Query: 96  AEVAAKRVM----ERVSGVNIVPHFCRIEDKDI---SFYNDFNIIVLGLDSIEARSYINA 148
           +EVAA+ V     +    +N        E ++I   SF+   + +   LD+++AR+Y++ 
Sbjct: 486 SEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALDNVDARTYVDR 545
Query: 149 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 208
             C F              KP+++ GT G KG+ +VIIP +T  +  +    PP+   PL
Sbjct: 546 -RCVFYR------------KPLLESGTLGTKGNTQVIIPRLTESYSSS--RDPPEKSIPL 590
Query: 209 CTLAETPRTAAHCIEYA 225
           CTL   P    H I +A
Sbjct: 591 CTLRSFPNKIDHTIAWA 607

>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The Moeb-Moad Protein Complex Length = 249

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 88/182 (48%), Gaps = 22/182 (12%)
Query: 22  LVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLN 81
           L G  F+    L+D     +R+L+VG GGLGC   + LA +G  NL ++D D + +SNL 
Sbjct: 18  LRGFDFDGQEALKD-----SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQ 72
Query: 82  RQFLFRMEDVGKPKAEVAAKRVMERVS-GVNIVPHFCRIEDKDI-SFYNDFNIIVLGLDS 139
           RQ L     VG+PK E +A+  + R++  + I P    ++D ++ +   + ++++   D+
Sbjct: 73  RQTLHSDATVGQPKVE-SARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDN 131
Query: 140 IEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVII-PGVTPCFECTIW 198
           +  R+ +NA  C   +             P+V G     +G   V       PC+ C   
Sbjct: 132 VAVRNQLNA-GCFAAKV------------PLVSGAAIRMEGQITVFTYQDGEPCYRCLSR 178
Query: 199 LF 200
           LF
Sbjct: 179 LF 180

>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp Length = 353

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 33  LRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVG 92
           L  D  + A+++++G GG+G  +   LA SG   + +ID D+IE +NL RQ LF  +DVG
Sbjct: 111 LVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVG 170
Query: 93  KPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACS 152
           K K EV  + +++R S +++      I D     Y D + +       EA  ++ +    
Sbjct: 171 KNKTEVIKRELLKRNSEISVSEIALNIND-----YTDLHKVP------EADIWVVSADHP 219
Query: 153 FLEYETDDKPREETIKPMVDGG-TEGFKGHARVIIPGVTPCFEC 195
           F      +K      +P ++ G          + +PG T C+EC
Sbjct: 220 FNLINWVNKYCVRANQPYINAGYVNDIAVFGPLYVPGKTGCYEC 263

>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb Length = 358

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 33  LRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVG 92
           L  D  + A+++++G GG+G  +   LA SG   + +ID D+IE +NL RQ LF  +DVG
Sbjct: 108 LVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVG 167
Query: 93  KPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACS 152
           K K EV  + +++R S +++      I D     Y D + +       EA  ++ +    
Sbjct: 168 KNKTEVIKRELLKRNSEISVSEIALNIND-----YTDLHKVP------EADIWVVSADHP 216
Query: 153 FLEYETDDKPREETIKPMVDGG-TEGFKGHARVIIPGVTPCFEC 195
           F      +K      +P ++ G          + +PG T C+EC
Sbjct: 217 FNLINWVNKYCVRANQPYINAGYVNDIAVFGPLYVPGKTGCYEC 260

>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex Length = 251

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           +++L++G GGLG      LA +G   L + D D + +SNL RQ LF  ED+ +PK++V+ 
Sbjct: 29  SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQ 88
Query: 101 KRVMERVSGVNIVPHFCRIED---KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYE 157
           +R+ +    + +     R+     KD     D  +++   D++  R  INA AC  L   
Sbjct: 89  QRLTQLNPDIQLTALQQRLTGEALKDAVARAD--VVLDCTDNMATRQEINA-ACVALN-- 143
Query: 158 TDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP-CFECTIW 198
                      P++     GF G   V+ P     C+ C +W
Sbjct: 144 ----------TPLITASAVGFGGQLMVLTPPWEQGCYRC-LW 174

>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif Length = 253

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           +++L++G GGLG      LA +G   L + D D + +SNL RQ LF  ED+ +PK++V+ 
Sbjct: 31  SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQ 90
Query: 101 KRVMERVSGVNIVPHFCRIED---KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYE 157
           +R+ +    + +     R+     KD     D  +++   D++  R  INA AC  L   
Sbjct: 91  QRLTQLNPDIQLTALQQRLTGEALKDAVARAD--VVLDCTDNMATRQEINA-ACVALN-- 145
Query: 158 TDDKPREETIKPMVDGGTEGFKGHARVII-PGVTPCFECTIW 198
                      P++     GF G   V+  P    C+ C +W
Sbjct: 146 ----------TPLITASAVGFGGQLMVLTPPWEQGCYRC-LW 176

>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex Length = 346

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 53/95 (55%)
Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           +R+L+VG  GLG E+ K+L L+G K L ++D +++   +   QFL R   VG+ +AE + 
Sbjct: 37  SRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASL 96
Query: 101 KRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVL 135
           +R       V++      IE K  SF+  F+ + L
Sbjct: 97  ERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCL 131

>pdb|3RUI|A Chain A, Crystal Structure Of Atg7c-Atg8 Complex Length = 340

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 32  ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV 91
           +L  D+ +  ++L++GAG LGC + + L   G + +  +D   +  SN  RQ L+  ED 
Sbjct: 26  DLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC 85
Query: 92  GKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYNDF----------NIIVL 135
           GKPKAE+AA   KR+  +   +GV + +P        + + + DF          +II L
Sbjct: 86  GKPKAELAAASLKRIFPLXDATGVKLSIPXIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 145
Query: 136 GLDSIEAR 143
            +DS E+R
Sbjct: 146 LVDSRESR 153

>pdb|4GSK|A Chain A, Crystal Structure Of An Atg7-Atg10 Crosslinked Complex Length = 615

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 32  ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV 91
           +L  D+ +  ++L++GAG LGC + + L   G + +  +D   +  SN  RQ L+  ED 
Sbjct: 318 DLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDA 377
Query: 92  GKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYNDF----------NIIVL 135
           GKPKAE+AA   KR+  +   +GV + +P        + + + DF          +II L
Sbjct: 378 GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 437
Query: 136 GLDSIEAR 143
            +DS E+R
Sbjct: 438 LVDSRESR 445

>pdb|3VH1|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-595) Length = 598

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 32  ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV 91
           +L  D+ +  ++L++GAG LGC + + L   G + +  +D   +  SN  RQ L+  ED 
Sbjct: 319 DLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC 378
Query: 92  GKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYNDF----------NIIVL 135
           GKPKAE+AA   KR+  +   +GV + +P        + + + DF          +II L
Sbjct: 379 GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 438
Query: 136 GLDSIEAR 143
            +DS E+R
Sbjct: 439 LVDSRESR 446

>pdb|3VH3|A Chain A, Crystal Structure Of Atg7ctd-Atg8 Complex Length = 340

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 32  ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV 91
           +L  D+ +  ++L++GAG LGC + + L   G + +  +D   +  SN  RQ L+  ED 
Sbjct: 26  DLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC 85
Query: 92  GKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYNDF----------NIIVL 135
           GKPKAE+AA   KR+  +   +GV + +P        + + + DF          +II L
Sbjct: 86  GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 145
Query: 136 GLDSIEAR 143
            +DS E+R
Sbjct: 146 LVDSRESR 153

>pdb|3T7E|A Chain A, Atg8 Transfer From Atg7 To Atg3: A Distinctive E1-E2 Architecture And Mechanism In The Autophagy Pathway Length = 344

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 32  ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV 91
           +L  D+ +  ++L++GAG LGC + + L   G + +  +D   +  SN  RQ L+  ED 
Sbjct: 30  DLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC 89
Query: 92  GKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYNDF----------NIIVL 135
           GKPKAE+AA   KR+  +   +GV + +P        + + + DF          +II L
Sbjct: 90  GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 149
Query: 136 GLDSIEAR 143
            +DS E+R
Sbjct: 150 LVDSRESR 157

>pdb|3VH2|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Atg7 (1-613) Length = 616

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 32  ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV 91
           +L  D+ +  ++L++GAG LGC + + L   G + +  +D   +  SN  RQ L+  ED 
Sbjct: 319 DLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC 378
Query: 92  GKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYNDF----------NIIVL 135
           GKPKAE+AA   KR+  +   +GV + +P        + + + DF          +II L
Sbjct: 379 GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 438
Query: 136 GLDSIEAR 143
            +DS E+R
Sbjct: 439 LVDSRESR 446

>pdb|4GSL|A Chain A, Crystal Structure Of An Atg7-Atg3 Crosslinked Complex Length = 615

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 16/128 (12%)
Query: 32  ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDV 91
           +L  D+ +  ++L++GAG LGC + + L   G + +  +D   +  SN  RQ L+  ED 
Sbjct: 318 DLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDC 377
Query: 92  GKPKAEVAA---KRV--MERVSGVNI-VPHFCRIEDKDISFYNDF----------NIIVL 135
           GKPKAE+AA   KR+  +   +GV + +P        + + + DF          +II L
Sbjct: 378 GKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFL 437
Query: 136 GLDSIEAR 143
            +DS E+R
Sbjct: 438 LVDSRESR 445

>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8 And Mln4924 Length = 534

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 39  EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98
           E A + ++ A   G E+LK+L L G  +  +ID +++   +    F  +   +GK +AE 
Sbjct: 29  ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEA 88
Query: 99  AAKRVME---RVSGVNIVPHFCRIEDKDISFYNDFNIIV 134
           A + + E    VSG  +      + D D SF+  F ++V
Sbjct: 89  AMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVV 127

>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 536

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 39  EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98
           E A + ++ A   G E+LK+L L G  +  +ID +++   +    F  +   +GK +AE 
Sbjct: 31  ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEA 90
Query: 99  AAKRVME---RVSGVNIVPHFCRIEDKDISFYNDFNIIV 134
           A + + E    VSG  +      + D D SF+  F ++V
Sbjct: 91  AMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVV 129

>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2 Interaction Required For Optimal Conjugation Of The Ubiquitin-Like Protein Nedd8 Length = 531

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 39  EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98
           E A + ++ A   G E+LK+L L G  +  +ID +++   +    F  +   +GK +AE 
Sbjct: 31  ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEA 90
Query: 99  AAKRVME---RVSGVNIVPHFCRIEDKDISFYNDFNIIV 134
           A + + E    VSG  +      + D D SF+  F ++V
Sbjct: 91  AMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVV 129

>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The Refined Structure Of The Activating Enzyme For Nedd8 Length = 537

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 39  EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98
           E A + ++ A   G E+LK+L L G  +  +ID +++   +    F  +   +GK +AE 
Sbjct: 32  ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEA 91
Query: 99  AAKRVME---RVSGVNIVPHFCRIEDKDISFYNDFNIIV 134
           A + + E    VSG  +      + D D SF+  F ++V
Sbjct: 92  AMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVV 130

>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex Length = 529

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 39  EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV 98
           E A + ++ A   G E+LK+L L G  +  +ID +++   +    F  +   +GK +AE 
Sbjct: 29  ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEA 88
Query: 99  AAKRVME---RVSGVNIVPHFCRIEDKDISFYNDFNIIV 134
           A + + E    VSG  +      + D D SF+  F ++V
Sbjct: 89  AMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVV 127

>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp Length = 292

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 66/159 (41%), Gaps = 29/159 (18%)
Query: 59  LALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKR-------VMERVSGVN 111
           L   G   L + D D++E++N+NR F F+    G  K + A          V+  V   N
Sbjct: 55  LTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYN 113
Query: 112 IVP-----HFC-RIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREE 165
           I       HF  RI +  +      ++++  +D+ EAR  IN  AC+ L     +    E
Sbjct: 114 ITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTIN-TACNELGQTWMESGVSE 172
Query: 166 TIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQV 204
                         GH ++IIPG + CF C     PP V
Sbjct: 173 N----------AVSGHIQLIIPGESACFACA----PPLV 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	328
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	1e-149
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	1e-142
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	8e-89
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	4e-26
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	1e-57
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	9e-45
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	2e-23
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	2e-51
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	5e-40
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	2e-32
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	1e-31
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	3e-29
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	5e-29
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	2e-28
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	9e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805

 Score =  438 bits (1127), Expect = e-149
 Identities = 170/312 (54%), Positives = 222/312 (71%), Gaps = 4/312 (1%)

Query: 6   PSRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFK 65
             R   + K L R+G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+
Sbjct: 377 EGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFR 436

Query: 66  NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDIS 125
            + VIDMD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +
Sbjct: 437 QIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDT 496

Query: 126 FYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVI 185
           FY  F+IIV GLDSI AR +IN +  S L YE D      +I P++DGGTEGFKG+ARVI
Sbjct: 497 FYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLDPSSIVPLIDGGTEGFKGNARVI 555

Query: 186 IPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGKSFDPD 242
           +PG+T C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D D
Sbjct: 556 LPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGD 615

Query: 243 DPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIAS 302
           DPEH+QW++ ++++RA  + I GVTY LTQGVVK IIPA+ASTNA+I+A CA E  KIA+
Sbjct: 616 DPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIAT 675

Query: 303 GCSKTLSNYLTY 314
                L+NYL +
Sbjct: 676 SAYIPLNNYLVF 687

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score =  408 bits (1049), Expect = e-142
 Identities = 168/317 (52%), Positives = 219/317 (69%), Gaps = 4/317 (1%)

Query: 1   MADTAPSRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLA 60
           M      R   + K L R+G    P FEP TE    L +  ++LV+GAGGLGCELLK+LA
Sbjct: 1   MKLDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLA 60

Query: 61  LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE 120
           LSGF+ + VIDMD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+
Sbjct: 61  LSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQ 120

Query: 121 DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKG 180
           D + +FY  F+IIV GLDSI AR +IN      L    D      +I P++DGGTEGFKG
Sbjct: 121 DFNDTFYRQFHIIVCGLDSIIARRWING-MLISLLNYEDGVLDPSSIVPLIDGGTEGFKG 179

Query: 181 HARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVH---SGK 237
           +ARVI+PG+T C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++W +      G 
Sbjct: 180 NARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGV 239

Query: 238 SFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALET 297
             D DDPEH+QW++ ++++RA  + I GVTY LTQGVVK IIPA+ASTNA+I+A CA E 
Sbjct: 240 PLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEV 299

Query: 298 LKIASGCSKTLSNYLTY 314
            KIA+     L+NYL +
Sbjct: 300 FKIATSAYIPLNNYLVF 316

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640

 Score =  277 bits (710), Expect = 8e-89
 Identities = 86/249 (34%), Positives = 131/249 (52%), Gaps = 22/249 (8%)

Query: 30  GTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRME 89
             EL + +    R+LVVGAGG+GCELLK+L L+GF ++++ID+D I+VSNLNRQFLF+ +
Sbjct: 8   PRELAEAVAG-GRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKK 66

Query: 90  DVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDI--SFYNDFNIIVLGLDSIEARSYIN 147
            VG+ KA+VA + V++     NIV +   I + D    F+  F +++  LD+  AR+++N
Sbjct: 67  HVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVN 126

Query: 148 AVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFP 207
              C   +             P+++ GT G+ G    I  GVT C+EC     P Q  FP
Sbjct: 127 R-MCLAAD------------VPLIESGTAGYLGQVTTIKKGVTECYECHPK--PTQRTFP 171

Query: 208 LCTLAETPRTAAHCIEYAHLI---KWDEVHSGKSFDPDDPE-HMQWVYSEAVKRAELFGI 263
             T+  TP    HCI +A  +    + E  + +   PD  +    W  +EA  RA     
Sbjct: 172 GATIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARARASNE 231

Query: 264 PGVTYSLTQ 272
            G    ++ 
Sbjct: 232 DGDIKRIST 240

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640

 Score =  107 bits (269), Expect = 4e-26
 Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 1/113 (0%)

Query: 209 CTLAETPRTAAHCIEYAHLIKWDEVH-SGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVT 267
             +    R  +  IE   +   ++   +   +D DDP  M +V S A  R  +F +   +
Sbjct: 313 LDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNMKS 372

Query: 268 YSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFF 320
               + +  NIIPAIA+TNA+I+    LE LKI SG            Q +  
Sbjct: 373 RFDIKSMAGNIIPAIATTNAVIAGLIVLEGLKILSGKIDQCRTIFLNKQPNPR 425

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =  199 bits (507), Expect = 1e-57
 Identities = 69/253 (27%), Positives = 116/253 (45%), Gaps = 31/253 (12%)

Query: 24  GPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLE-----VIDMDRIEVS 78
                 G + +  +   +++ +VG+G +GCE+LK+ AL G  +       V D D IE S
Sbjct: 410 NQIAVFGLDFQKKIAN-SKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKS 468

Query: 79  NLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNI--VPHFCRI-----EDKDISFYNDFN 131
           NLNRQFLFR +DVGK K+EVAA+ V      +         ++     E  + SF+   +
Sbjct: 469 NLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLD 528

Query: 132 IIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTP 191
            +   LD+++AR+Y++     +              KP+++ GT G KG+ +VIIP +T 
Sbjct: 529 FVTNALDNVDARTYVDRRCVFYR-------------KPLLESGTLGTKGNTQVIIPRLTE 575

Query: 192 CFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWD---EVHSGKSFDPDDPEHMQ 248
            +  +    PP+   PLCTL   P    H I +A  +      +     +     P  ++
Sbjct: 576 SYSSS--RDPPEKSIPLCTLRSFPNKIDHTIAWAKSLFQGYFTDSAENVNMYLTQPNFVE 633

Query: 249 WVYSEAVKRAELF 261
               ++     + 
Sbjct: 634 QTLKQSGDVKGVL 646

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =  162 bits (411), Expect = 9e-45
 Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 21/205 (10%)

Query: 30  GTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRME 89
           G E    +Q  + +L++G  GLG E+ K++ L+G K++ V D + +++++L+ QF    +
Sbjct: 18  GKEAMLKMQT-SNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEK 76

Query: 90  DVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVL-GLDSIEARSYINA 148
           D+G+ + +V   ++ E  + V +          D++  + F ++V     S+E +  IN 
Sbjct: 77  DIGQKRGDVTRAKLAELNAYVPVNVL---DSLDDVTQLSQFQVVVATDTVSLEDKVKINE 133

Query: 149 VACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPL 208
             C              +    +   T G  G+  V +       + T           +
Sbjct: 134 -FCH------------SSGIRFISSETRGLFGNTFVDLGDEFTVLDPT---GEEPRTGMV 177

Query: 209 CTLAETPRTAAHCIEYAHLIKWDEV 233
             +               L   + V
Sbjct: 178 SDIEPDGTVTMLDDNRHGLEDGNFV 202

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score =   99 bits (248), Expect = 2e-23
 Identities = 32/185 (17%), Positives = 67/185 (36%), Gaps = 13/185 (7%)

Query: 137 LDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECT 196
              + A + + A        +++ KP  +  K ++D           +IIP  TP     
Sbjct: 719 FHFVVAGASLRAYNYGIKSDDSNSKPNVDEYKSVID----------HMIIPEFTPNANLK 768

Query: 197 IWLFPPQVKFPLCTL---AETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSE 253
           I +                E  +  +   + + L  +         D D   H++++ + 
Sbjct: 769 IQVNDDDPDPNANAANGSDEIDQLVSSLPDPSTLAGFKLEPVDFEKDDDTNHHIEFITAC 828

Query: 254 AVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLT 313
           +  RA+ + I       T+ +   IIPAIA+T ++++    LE  K+    +        
Sbjct: 829 SNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTGLVNLELYKLIDNKTDIEQYKNG 888

Query: 314 YAQLS 318
           +  L+
Sbjct: 889 FVNLA 893

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score =  177 bits (449), Expect = 2e-51
 Identities = 43/214 (20%), Positives = 72/214 (33%), Gaps = 31/214 (14%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           A + ++ A   G E+LK+L L G  +  +ID +++   +    F  +   +GK +AE A 
Sbjct: 33  AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAM 92

Query: 101 KRVME---RVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYE 157
           + + E    VSG  +      + D D SF+  F ++V           +  V        
Sbjct: 93  EFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLW------ 146

Query: 158 TDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRT 217
                   +  P++   T G  G+ R+II              P      L      P  
Sbjct: 147 -------NSQIPLLICRTYGLVGYMRIIIKEHPVIESH-----PDNALEDLRLDKPFPEL 194

Query: 218 AAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVY 251
             H   Y               +  D  H  W+ 
Sbjct: 195 REHFQSYDL----------DHMEKKDHSHTPWIV 218

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score =  142 bits (360), Expect = 5e-40
 Identities = 57/300 (19%), Positives = 112/300 (37%), Gaps = 31/300 (10%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           +R+L+VG  GLG E+ K+L L+G K L ++D +++   +   QFL R   VG+ +AE + 
Sbjct: 37  SRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASL 96

Query: 101 KRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA---------- 150
           +R       V++      IE K  SF+  F+ + L   S +    ++ +           
Sbjct: 97  ERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTG 156

Query: 151 ----------CSFLEYET-DDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWL 199
                      +  E+E  ++K +   +   V+ G +  +     +    T   +  +  
Sbjct: 157 DVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAK---LDSSETTMVKKKVVF 213

Query: 200 FPPQV--KFPLCTL---AETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEA 254
            P +   +    +    A   RT +       L+K+              E  + +    
Sbjct: 214 CPVKEALEVDWSSEKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTYEEDSELLLQIR 273

Query: 255 VKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTY 314
               +  GI      L +  V+     +A   A++    A E +K  S      +N+  +
Sbjct: 274 NDVLDSLGISPDL--LPEDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFF 331

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Length = 292

 Score =  119 bits (300), Expect = 1e-31
 Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 32/179 (17%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
             + +VG GG+G    + L   G   L + D D++E++N+NR   F+    G  K + A 
Sbjct: 37  FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL-FFQPHQAGLSKVQAAE 95

Query: 101 KRVMERVSGVNIVPHFCRIEDKDISFY-------------NDFNIIVLGLDSIEARSYIN 147
             +      V    H   I   +   +                ++++  +D+ EAR  IN
Sbjct: 96  HTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTIN 155

Query: 148 AVACSFLEYETDDKPREETIKPMVDGG--TEGFKGHARVIIPGVTPCFECTIWLFPPQV 204
             AC+ L             +  ++ G       GH ++IIPG + CF C     P  V
Sbjct: 156 T-ACNELG------------QTWMESGVSENAVSGHIQLIIPGESACFAC---APPLVV 198

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Length = 251

 Score =  111 bits (280), Expect = 3e-29
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 18/164 (10%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           +++L++G GGLG      LA +G   L + D D + +SNL RQ LF  ED+ +PK++V+ 
Sbjct: 29  SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQ 88

Query: 101 KRVMERVSGVNIVPHFCRIEDKDI-SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETD 159
           +R+ +    + +     R+  + +       ++++   D++  R  INA AC  L     
Sbjct: 89  QRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINA-ACVALN---- 143

Query: 160 DKPREETIKPMVDGGTEGFKGHARVIIPGV-TPCFECTIWLFPP 202
                    P++     GF G   V+ P     C+ C   L+P 
Sbjct: 144 --------TPLITASAVGFGGQLMVLTPPWEQGCYRC---LWPD 176

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Length = 249

 Score =  111 bits (279), Expect = 5e-29
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 18/164 (10%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           +R+L+VG GGLGC   + LA +G  NL ++D D + +SNL RQ L     VG+PK E A 
Sbjct: 32  SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESAR 91

Query: 101 KRVMERVSGVNIVPHFCRIEDKDI-SFYNDFNIIVLGLDSIEARSYINAVACSFLEYETD 159
             +      + I P    ++D ++ +   + ++++   D++  R+ +NA  C   +    
Sbjct: 92  DALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNA-GCFAAK---- 146

Query: 160 DKPREETIKPMVDGGTEGFKGHARVIIPGV-TPCFECTIWLFPP 202
                    P+V G     +G   V       PC+ C   L   
Sbjct: 147 --------VPLVSGAAIRMEGQITVFTYQDGEPCYRC---LSRL 179

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Length = 340

 Score =  111 bits (280), Expect = 2e-28
 Identities = 41/193 (21%), Positives = 70/193 (36%), Gaps = 37/193 (19%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
            ++L++GAG LGC + + L   G + +  +D   +  SN  RQ L+  ED GKPKAE+AA
Sbjct: 35  TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA 94

Query: 101 KRVMERVSGVNIVPHFCRIEDKDISFYN----------------DFNIIVLGLDSIEARS 144
             +      ++       I        N                + +II L +DS E+R 
Sbjct: 95  ASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRW 154

Query: 145 YINAVACSFLEYETDDKPREETIKPMVDG--GTEG----FKGHARVIIPGVTPCFECTIW 198
             + +  +               K +++   G +       G+          C+ C   
Sbjct: 155 LPS-LLSNIEN------------KTVINAALGFDSYLVMRHGNRDEQSSKQLGCYFCHDV 201

Query: 199 LFPPQ--VKFPLC 209
           + P        L 
Sbjct: 202 VAPTDSLTDRTLD 214

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Length = 598

 Score =  109 bits (274), Expect = 9e-27
 Identities = 40/191 (20%), Positives = 69/191 (36%), Gaps = 35/191 (18%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
            ++L++GAG LGC + + L   G + +  +D   +  SN  RQ L+  ED GKPKAE+AA
Sbjct: 328 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAA 387

Query: 101 KRVMERVSGVNIVPHFCRIEDKDISFYN----------------DFNIIVLGLDSIEARS 144
             +      ++       I        N                + +II L +DS E+R 
Sbjct: 388 ASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRW 447

Query: 145 YINAVACSFLEYETDDKPREETIKPMVDG--GTEG----FKGHARVIIPGVTPCFECTIW 198
             + +  +               K +++   G +       G+          C+ C   
Sbjct: 448 LPS-LLSNIEN------------KTVINAALGFDSYLVMRHGNRDEQSSKQLGCYFCHDV 494

Query: 199 LFPPQVKFPLC 209
           + P        
Sbjct: 495 VAPTDSLTDRT 505

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 1e-08
 Identities = 54/363 (14%), Positives = 102/363 (28%), Gaps = 124/363 (34%)

Query: 5   APSRSRDL-----DKL-----LLRAGNLVGPTFEPGTELRDDLQE---YARILVVGAGGL 51
            PS    +     D+L     +    N+     +P  +LR  L E      +L+ G  G 
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGS 161

Query: 52  G-----CELLKDLALSGFKNLEV--IDM-------DRIE-VSNLNRQFL----------- 85
           G      ++     +    + ++  +++         +E +  L  Q             
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 86  ---FRMEDVGKPKAEVAAKR-------VMERVSGVNIVPHF---CRI----EDKDISFYN 128
               R+  +      +   +       V+  V        F   C+I      K ++ + 
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 129 DFNI--------IVLGLDSIEARSYINAVACSFLEYETDDKPRE-ETIKPMV-------- 171
                         + L   E +S +      +L+    D PRE  T  P          
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLL----LKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 172 -DGGT--EGFK-----GHARVI---IPGVTP-----CFE-CTIWLFPPQVKFPLCTLAET 214
            DG    + +K         +I   +  + P      F+  ++  FPP    P   L+  
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSAHIPTILLS-- 393

Query: 215 PRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQ---WVYSEAVKRAE--LFGIPGVTYS 269
                        + W +V         D   +      YS   K+ +     IP +   
Sbjct: 394 -------------LIWFDV------IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 270 LTQ 272
           L  
Sbjct: 435 LKV 437

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	328
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	100.0
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	100.0
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	100.0
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	100.0
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	100.0
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	100.0
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	100.0
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	100.0
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	100.0
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	100.0
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	100.0
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	100.0
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.95
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.65
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.63
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.61
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.54
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.47
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.24
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.22
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.16
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.07
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.99
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.98
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.97
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.96
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.95
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.93
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.9
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.87
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.86
1z7l_A	276	Ubiquitin-activating enzyme E1 1; SCCH, second cat	96.83
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.73
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.69
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.69
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.64
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.62
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.57
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.52
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.51
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.49
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.49
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.48
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.46
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.45
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.4
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.31
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.29
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.29
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.24
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.21
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	96.21
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	96.2
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.2
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.16
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.16
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.13
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.13
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.12
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	96.1
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.09
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.07
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.06
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.04
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.03
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.03
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.01
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	95.98
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.96
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.92
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	95.92
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	95.91
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	95.89
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.85
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.84
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.84
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	95.82
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.8
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.79
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	95.76
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.75
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	95.72
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	95.72
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.7
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.7
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.67
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.66
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.65
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	95.64
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.62
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.61
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.61
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	95.61
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	95.61
3tl2_A	315	Malate dehydrogenase; center for structural genomi	95.6
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	95.58
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.55
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.53
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	95.53
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.52
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	95.51
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	95.51
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.49
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.48
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.45
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.43
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.43
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.43
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.4
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	95.37
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.37
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.35
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	95.35
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	95.33
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.33
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.32
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.31
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	95.31
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.28
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.27
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.26
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	95.26
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	95.25
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.25
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.24
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.23
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	95.22
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	95.21
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	95.21
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	95.18
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.17
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.15
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	95.12
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	95.11
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.11
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.1
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	95.09
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	95.07
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.06
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.01
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.01
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	95.0
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	94.98
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	94.98
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.98
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.97
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	94.94
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	94.9
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	94.85
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	94.83
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	94.82
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.79
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	94.79
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	94.75
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	94.74
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	94.72
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	94.64
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	94.64
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	94.63
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	94.63
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	94.58
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	94.57
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.55
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	94.54
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.51
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.47
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.42
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	94.4
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	94.37
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	94.34
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	94.31
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	94.25
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	94.21
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	94.17
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	94.09
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.08
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	94.08
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	94.02
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	94.0
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	94.0
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.97
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	93.95
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	93.94
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	93.9
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	93.89
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	93.88
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	93.81
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	93.8
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	93.8
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	93.79
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	93.78
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	93.76
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	93.76
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	93.75
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	93.75
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	93.72
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	93.72
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.72
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	93.71
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	93.66
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	93.65
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	93.62
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	93.6
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	93.59
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	93.59
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	93.56
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	93.56
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	93.54
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	93.54
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	93.5
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	93.5
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	93.49
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	93.44
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	93.44
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	93.43
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	93.4
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	93.4
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	93.39
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	93.38
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	93.38
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	93.38
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	93.37
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	93.35
1lnq_A	336	MTHK channels, potassium channel related protein;	93.35
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	93.34
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	93.32
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	93.32
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	93.31
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	93.3
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	93.23
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	93.2
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	93.19
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	93.17
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	93.11
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.11
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	93.07
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	93.06
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	93.05
3imf_A	257	Short chain dehydrogenase; structural genomics, in	93.02
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	93.0
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.97
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	92.95
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	92.95
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	92.93
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	92.92
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	92.92
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	92.91
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	92.91
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	92.91
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	92.9
1xq1_A	266	Putative tropinone reducatse; structural genomics,	92.9
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	92.88
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	92.84
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	92.83
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	92.82
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	92.81
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	92.77
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	92.75
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	92.72
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	92.71
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	92.71
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	92.67
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	92.66
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	92.6
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	92.6
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	92.58
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	92.57
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	92.55
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	92.55
1spx_A	278	Short-chain reductase family member (5L265); paral	92.52
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	92.51
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	92.51
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	92.47
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	92.46
4hb9_A	412	Similarities with probable monooxygenase; flavin,	92.42
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	92.41
2cul_A	232	Glucose-inhibited division protein A-related PROT	92.41
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	92.38
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	92.36
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	92.35
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	92.34
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	92.34
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	92.31
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	92.29
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	92.29
3rih_A	293	Short chain dehydrogenase or reductase; structural	92.27
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	92.27
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.27
3cxt_A	291	Dehydrogenase with different specificities; rossma	92.24
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	92.21
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	92.2
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	92.19
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	92.18
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	92.18
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	92.16
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	92.14
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	92.13
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	92.12
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	92.12
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	92.11
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	92.08
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	92.08
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	92.07
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	92.04
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	92.03
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	92.03
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	92.03
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	92.02
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	92.01
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	91.94
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	91.94
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	91.91
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	91.9
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	91.88
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	91.85
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	91.84
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	91.83
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.82
1xkq_A	280	Short-chain reductase family member (5D234); parra	91.79
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	91.75
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	91.73
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	91.72
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	91.71
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	91.65
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	91.63
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	91.61
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	91.6
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	91.58
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	91.57
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	91.53
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	91.48
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	91.44
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	91.44
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	91.44
1z7l_A	276	Ubiquitin-activating enzyme E1 1; SCCH, second cat	91.44
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	91.43
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	91.43
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	91.43
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	91.4
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	91.39
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	91.39
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	91.34
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	91.32
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	91.31
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	91.31
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	91.31
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	91.29
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	91.28
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	91.26
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.26
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	91.26
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	91.26
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	91.25
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	91.25
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	91.25
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	91.24
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	91.19
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	91.19
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	91.18
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	91.15
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	91.11
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.09
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	91.05
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	91.03
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	91.03
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	91.02
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	91.01
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	91.01
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	91.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	90.98
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	90.98
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	90.93
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	90.93
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	90.91
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	90.89
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	90.89
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	90.89
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	90.85
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	90.84
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	90.84
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	90.83
1xhl_A	297	Short-chain dehydrogenase/reductase family member	90.82
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	90.82
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	90.79
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	90.78
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	90.78
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	90.74
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	90.72
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	90.71
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	90.7
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	90.68
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	90.67
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	90.66
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.64
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	90.63
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	90.61
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	90.59
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	90.59
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	90.57
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	90.57
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	90.56
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	90.56
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	90.52
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	90.51
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	90.51
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	90.44
4f6c_A	427	AUSA reductase domain protein; thioester reductase	90.44
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	90.43
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	90.42
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	90.42
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	90.39
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	90.35
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	90.33
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	90.32
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	90.31
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	90.31
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	90.3
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	90.29
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	90.26
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	90.25
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	90.24
3l07_A	285	Bifunctional protein fold; structural genomics, ID	90.23
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	90.23
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	90.23
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	90.2
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	90.19
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	90.17
1xq6_A	253	Unknown protein; structural genomics, protein stru	90.16
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	90.07
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	90.05
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	90.03
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	90.02
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	89.99
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	89.99
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	89.98
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	89.97
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	89.96
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	89.96
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	89.91
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	89.91
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	89.89
3dme_A	369	Conserved exported protein; structural genomics, P	89.87
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	89.86
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	89.84
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	89.82
4dqx_A	277	Probable oxidoreductase protein; structural genomi	89.8
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	89.79
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	89.79
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	89.77
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	89.76
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	89.75
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	89.71
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	89.7
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	89.66
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	89.66
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	89.65
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	89.65
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	89.62
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	89.6
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	89.58
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	89.56
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	89.56
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	89.55
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	89.54
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	89.53
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	89.44
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	89.44
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	89.41
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	89.38
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	89.34
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	89.33
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	89.32
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	89.32
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.21
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	89.1
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	89.06
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	89.05
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	89.04
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	89.04
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	89.01
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	89.0
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	89.0
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	89.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	88.92
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	88.91
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	88.9
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	88.88
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	88.87
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	88.86
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	88.84
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	88.84
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	88.75
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	88.75
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	88.74
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	88.71
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	88.61
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	88.61
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	88.6

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=100.00  E-value=1.1e-59  Score=455.49  Aligned_cols=318  Identities=53%  Similarity=0.933  Sum_probs=296.5

Q ss_pred             CCCCCCccchhhhhhhhcCCCCCCCCCCccHHHHHH-HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccC
Q 020259            1 MADTAPSRSRDLDKLLLRAGNLVGPTFEPGTELRDD-LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSN   79 (328)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~rq~~l~G~~~q~~-Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~n   79 (328)
                      |-...+.+|..+++++.+..+|....+.+|.+.|++ | ++++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+|
T Consensus         1 ~~~~~~~r~~~vntl~~~~g~~~g~gf~~g~e~~~~~L-~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sN   79 (434)
T 1tt5_B            1 MKLDWEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLL-DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSN   79 (434)
T ss_dssp             CCSSCTTTTHHHHHHHHSCCSSCCTTCCCCSSHHHHHH-HTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBCCGGG
T ss_pred             CccchhhhhccceEEEcCCCcccccccccCHHHHHHHh-cCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEechhc
Confidence            667789999999999999999999999999988865 5 59999999999999999999999999999999999999999


Q ss_pred             CccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCC
Q 020259           80 LNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETD  159 (328)
Q Consensus        80 l~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~  159 (328)
                      ++|||+|+++|+|++||++++++++++||+++|+++...+.+.+.++++++|+||+|+|+.++|.++|+.|+.+.++.+ 
T Consensus        80 L~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~~R~~in~~c~~~~~~~~-  158 (434)
T 1tt5_B           80 LNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYED-  158 (434)
T ss_dssp             TTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEESCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCBSS-
T ss_pred             cCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEecccchhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhhhccc-
Confidence            9999999999999999999999999999999999999998877788999999999999999999999999987655533 


Q ss_pred             CCccccccceEEEeeecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCC--
Q 020259          160 DKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGK--  237 (328)
Q Consensus       160 ~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--  237 (328)
                      |..++..++|+|++++.|+.|++++++|+.++||+|+++.+|++..+|+|++.++|+.++||+.|+..+.|+..++..  
T Consensus       159 g~~~~~~~iPli~~~~~g~~G~v~v~~p~~t~Cy~C~~~~~p~~~~~p~Ct~~~~p~~~~h~i~~a~~i~~~~~~~~~~~  238 (434)
T 1tt5_B          159 GVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEG  238 (434)
T ss_dssp             SCBCGGGCCCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHSCTTCTT
T ss_pred             cccccccCCcEEEeccccceeEEEEECCCCCCCcccccCCCCCcCCCcccccccCCcchhHHHHHHHHHHHhhhcccccc
Confidence            555566799999999999999999999999999999999888888999999999999999999999999998876543  


Q ss_pred             -CCCCCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeec
Q 020259          238 -SFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQ  316 (328)
Q Consensus       238 -~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg  316 (328)
                       +++.++.+|++++++.++++++.+|+.+.+...++++++++.|+++||+|||||++++|++|+|+|.+.|++|+++||+
T Consensus       239 ~~~d~d~~~~~~~v~~~a~~~~~~~gi~~~~~~~~~gv~~~iipaia~t~aiig~l~a~EaiK~l~g~~~~l~~~l~~d~  318 (434)
T 1tt5_B          239 VPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFND  318 (434)
T ss_dssp             CCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTCSCCCCSEEEEEC
T ss_pred             cccCCCcHHHHHHHHHHHHHHHHHcCCCccCHHHHHhHhhccCcccccHHHHHHHHHHHHHHHHHhCCCcccCceEEEEc
Confidence             7888899999999999999999999998888889999999999999999999999999999999999999999999999


Q ss_pred             Cccc
Q 020259          317 LSFF  320 (328)
Q Consensus       317 ~~~~  320 (328)
                      .++.
T Consensus       319 ~~~~  322 (434)
T 1tt5_B          319 VDGL  322 (434)
T ss_dssp             SBSC
T ss_pred             CCCc
Confidence            8876

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=100.00  E-value=2.1e-59  Score=442.98  Aligned_cols=291  Identities=20%  Similarity=0.249  Sum_probs=251.7

Q ss_pred             CCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHH
Q 020259           19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV   98 (328)
Q Consensus        19 ~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a   98 (328)
                      .++|+||+++||.++|++| ++++|+|||+||+|++++|||+++|||+|+|+|+|.|+++|++||||++++|+|++||++
T Consensus        16 ~~rY~Rq~~l~G~~~q~~L-~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~   94 (346)
T 1y8q_A           16 AAQYDRQIRLWGLEAQKRL-RASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEA   94 (346)
T ss_dssp             HHHHHHHHHHHCHHHHHHH-HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHH
T ss_pred             HHHHHHHHHhhCHHHHHHH-hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHH
Confidence            3579999999999999999 699999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecce
Q 020259           99 AAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF  178 (328)
Q Consensus        99 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~  178 (328)
                      ++++|+++||++++++++..+.+...+++++||+||+|+|+.+.+.++|++|             ++.++|+|.+++.|+
T Consensus        95 ~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~-------------~~~~ip~i~~~~~G~  161 (346)
T 1y8q_A           95 SLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQIC-------------HKNSIKFFTGDVFGY  161 (346)
T ss_dssp             HHHHHHHTCTTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHH-------------HHTTCEEEEEEEEBT
T ss_pred             HHHHHHhHCCCeEEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHH-------------HHcCCCEEEEeeccc
Confidence            9999999999999999999887777889999999999999999999999999             677899999999999


Q ss_pred             eeeEEEEcCCCCCccccccCC--CCC---------C---------------------C--CCCcc--cc-cCCCCChhhH
Q 020259          179 KGHARVIIPGVTPCFECTIWL--FPP---------Q---------------------V--KFPLC--TL-AETPRTAAHC  221 (328)
Q Consensus       179 ~G~v~~~~p~~~~c~~c~~~~--~~~---------~---------------------~--~~~~~--~~-~~~~~~~~~~  221 (328)
                      .|+++++++ .+.|+.|....  .|.         +                     .  ..+.|  .+ ...++.+.++
T Consensus       162 ~G~v~~d~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~r~~~~~  240 (346)
T 1y8q_A          162 HGYTFANLG-EHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSEKAKAALKRTTSDY  240 (346)
T ss_dssp             EEEEEEECS-EEEEEEECC-----------------------CCCEEEEEEECCCHHHHTSCCSCSHHHHHHHTTSCTHH
T ss_pred             EEEEEEecC-CCCEEEcCCCCcCCCcccccCCCCCcccccCCceEEEeceeeccCHHHHhcCCchhhhhhhhcccccHHH
Confidence            999999997 46677775331  100         0                     0  01222  11 1245667788


Q ss_pred             HHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHH
Q 020259          222 IEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIA  301 (328)
Q Consensus       222 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~i  301 (328)
                      +.+..+..|+..+++.|.+..++++++++++.+.+++++++++..  .+.+++++.+.++++|++||+||++||||||++
T Consensus       241 ~~~~al~~f~~~~~~~P~~~~~~~d~~~l~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~l~pv~AiiGGi~aQEviK~i  318 (346)
T 1y8q_A          241 FLLQVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPD--LLPEDFVRYCFSEMAPVCAVVGGILAQEIVKAL  318 (346)
T ss_dssp             HHHHHHHHHHHHSSSCCCGGGHHHHHHHHHHHHHHHHHTTTCCGG--GSCGGGGGSSCSBCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcc--cCCHHHHHHhcCCccHHHHHHHHHHHHHHHHHh
Confidence            889999999999877665556788999999999999999987632  234555666789999999999999999999999


Q ss_pred             hcCCCCCCceEEeecCccccccccc
Q 020259          302 SGCSKTLSNYLTYAQLSFFASAMQF  326 (328)
Q Consensus       302 t~~~~pi~N~~~fdg~~~~~~~~~~  326 (328)
                      |||+.|++|||+||+.++.+.+++|
T Consensus       319 t~k~~Pl~n~~~fD~~~~~~~~~~l  343 (346)
T 1y8q_A          319 SQRDPPHNNFFFFDGMKGNGIVECL  343 (346)
T ss_dssp             HTBSCCCCSEEEEETTTTEEEEECC
T ss_pred             cCCCcccccEEEEEccccceeEEec
Confidence            9999999999999999999999876

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=100.00  E-value=1.1e-56  Score=467.58  Aligned_cols=315  Identities=53%  Similarity=0.940  Sum_probs=294.4

Q ss_pred             CCccchhhhhhhhcCCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCcccc
Q 020259            5 APSRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQF   84 (328)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~   84 (328)
                      -.+||.+++++++|+.+|....+.+|.++|+++.++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+|||
T Consensus       376 l~~rw~~i~~~l~r~g~~~~~~~~~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl~rq~  455 (805)
T 2nvu_B          376 WEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQF  455 (805)
T ss_dssp             CTTTTHHHHHHHHSCCTTSCTTCCCCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBCCGGGGGTCT
T ss_pred             ccchhhHHHHhhcCCCCCCCcccCCCHHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCeeccccccccc
Confidence            46899999999999999999999999999998723999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccc
Q 020259           85 LFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPRE  164 (328)
Q Consensus        85 l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~  164 (328)
                      +++.+|+|++||++++++|+++||+++|+++...+.+.+.++++++|+||+|+|+.++|.++|+.|+.+.++.+ |++++
T Consensus       456 ~~~~~~vg~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~d~vv~~~d~~~~r~~in~~~~~~~~~~~-g~~~~  534 (805)
T 2nvu_B          456 LFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYED-GVLDP  534 (805)
T ss_dssp             TCCGGGTTSBHHHHHHHHHHHHSTTCEEEEEESCGGGSCHHHHHTCSEEEECCSCHHHHHHHHHHHHHTCCEET-TEECG
T ss_pred             ccchhhcCChHHHHHHHHHHHHCCCCEEEEEeccccccHHHHHhcCCEEEECCCCHHHHHHHHHHHHHHhhccc-ccccc
Confidence            99999999999999999999999999999999999887789999999999999999999999999987654433 55556


Q ss_pred             cccceEEEeeecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCC---CCCC
Q 020259          165 ETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGK---SFDP  241 (328)
Q Consensus       165 ~~~~p~i~~~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~~  241 (328)
                      ..++|+|++++.|+.|++++++|+.++||+|.++.+|++...+.|++.++|+.++||+.|+..+.|+..++..   +++.
T Consensus       535 ~~~~p~i~~~~~g~~G~~~~~~p~~~~c~~c~~~~~p~~~~~~~c~~~~~~~~~~~~i~~a~~~~~~~~~~~~~~~~~d~  614 (805)
T 2nvu_B          535 SSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDG  614 (805)
T ss_dssp             GGCCCEEEEEEETTEEEEEEECTTTSCCTTTSGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHHCTTSTTCCCCT
T ss_pred             ccCCcEEEeccccCceeEEEECCCCCCceeccCCCCCCCCCCCccccCCCCCCccHHHHHHHHhhcccccCCCCcccCCC
Confidence            6799999999999999999999999999999998888888899999999999999999999999999887544   7788


Q ss_pred             CChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCccc
Q 020259          242 DDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFF  320 (328)
Q Consensus       242 ~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~  320 (328)
                      ++.+|++++.+.++++++.+|+...+....+++++++.|+++||+|||||++++|++|+|+|++.|++|+++||+.++.
T Consensus       615 ~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~i~p~i~~~~aiig~~~a~e~ik~l~~~~~~l~~~~~~~~~~~~  693 (805)
T 2nvu_B          615 DDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL  693 (805)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCSEEEEECSBSC
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhccccccCceEEecCCCCc
Confidence            8999999999999999999999988888899999999999999999999999999999999999999999999998875

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=100.00  E-value=3.5e-53  Score=419.59  Aligned_cols=156  Identities=24%  Similarity=0.282  Sum_probs=148.1

Q ss_pred             CCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHH
Q 020259           19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV   98 (328)
Q Consensus        19 ~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a   98 (328)
                      .++|+||+++||.++|++| ++++|+|||+||+|++++|||+++|||+|+|+|+|.|+.+||+||||++++|+|++||++
T Consensus        12 ~~rY~Rqi~l~G~~~q~~L-~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~   90 (531)
T 1tt5_A           12 EQKYDRQLRLWGDHGQEAL-ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEA   90 (531)
T ss_dssp             HHHTHHHHHHHHHHHHHHH-HHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHH
T ss_pred             HHHhhHHHHhcCHHHHHHH-hcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHH
Confidence            3579999999999999999 699999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCcEEEEEecccCC---cchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259           99 AAKRVMERVSGVNIVPHFCRIED---KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT  175 (328)
Q Consensus        99 ~~~~l~~lnp~v~v~~~~~~~~~---~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~  175 (328)
                      ++++|+++||++++++++..+.+   ...+++++||+||+|+|+.+.+..+|++|             +..++|+|.+++
T Consensus        91 a~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c-------------~~~~iplI~~~~  157 (531)
T 1tt5_A           91 AMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVL-------------WNSQIPLLICRT  157 (531)
T ss_dssp             HHHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHH-------------HHTTCCEEEEEE
T ss_pred             HHHHHHHhCCCCeEEEeCCCcchhhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHH-------------HHcCCCEEEEEe
Confidence            99999999999999999887754   45788999999999999999999999999             677899999999


Q ss_pred             cceeeeEEEEcCC
Q 020259          176 EGFKGHARVIIPG  188 (328)
Q Consensus       176 ~G~~G~v~~~~p~  188 (328)
                      .|+.|++++++|+
T Consensus       158 ~G~~G~v~~~~p~  170 (531)
T 1tt5_A          158 YGLVGYMRIIIKE  170 (531)
T ss_dssp             ETTEEEEEEECSC
T ss_pred             cCCeEEEEEEcCC
Confidence            9999999999885

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=100.00  E-value=2.5e-51  Score=410.16  Aligned_cols=273  Identities=38%  Similarity=0.632  Sum_probs=243.9

Q ss_pred             CCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHH
Q 020259           25 PTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVM  104 (328)
Q Consensus        25 q~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~  104 (328)
                      |+++||.++|++| ++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+|||+|+.+|+|++||++++++|+
T Consensus         3 qi~l~G~e~Q~kL-~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~   81 (640)
T 1y8q_B            3 LSRGLPRELAEAV-AGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVL   81 (640)
T ss_dssp             ---CCCHHHHHHH-HHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHH
T ss_pred             hhhhcCHHHHHHH-hcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHH
Confidence            8999999999999 699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCcEEEEEecccCCc--chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeE
Q 020259          105 ERVSGVNIVPHFCRIEDK--DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHA  182 (328)
Q Consensus       105 ~lnp~v~v~~~~~~~~~~--~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v  182 (328)
                      ++||+++|+++...+.+.  ..++++++|+||+|+|+.++|.++|+.|             +..++|+|.+++.|+.|++
T Consensus        82 ~iNP~v~V~a~~~~i~~~~~~~~~~~~~DlVvda~Dn~~aR~~ln~~c-------------~~~~iPlI~~g~~G~~G~v  148 (640)
T 1y8q_B           82 QFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAARNHVNRMC-------------LAADVPLIESGTAGYLGQV  148 (640)
T ss_dssp             TTCTTCEEEEEESCTTSTTSCHHHHTTCSEEEECCSCHHHHHHHHHHH-------------HHHTCCEEEEEEETTEEEE
T ss_pred             HHCCCCeEEEEecccchhhhhHhhhcCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEEEecccceE
Confidence            999999999999988653  4688999999999999999999999999             5678999999999999999


Q ss_pred             EEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHH----------------------------------
Q 020259          183 RVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLI----------------------------------  228 (328)
Q Consensus       183 ~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------------------------------  228 (328)
                      ++++|+.++||+|..  .|++..+|.|++.++|+.+.||+.|+..+                                  
T Consensus       149 ~vi~p~~t~Cy~C~~--~p~~~~~p~Cti~~~p~~~~hci~~a~~~f~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (640)
T 1y8q_B          149 TTIKKGVTECYECHP--KPTQRTFPGATIRNTPSEPIHCIVWAKYLFNQLFGEEDADQEVSPDRADPEAAWEPTEAEARA  226 (640)
T ss_dssp             EEECTTTSCCTTSSC--CCCCCCCCTTTTTSCCCSHHHHHHHHHHHHHHHHSCCCGGGCCSCCTTCTTSCCC--------
T ss_pred             EEECCCCCCCcccCC--CCCCcccceeeecCCCCchHHHHHHHHHHHHHHhCCcchhhhhcccccchhhhhhhhhhhhhh
Confidence            999999999999975  45667889999999999999999876543                                  


Q ss_pred             ---------------h------------------------------hhhh------------------------------
Q 020259          229 ---------------K------------------------------WDEV------------------------------  233 (328)
Q Consensus       229 ---------------~------------------------------~~~~------------------------------  233 (328)
                                     .                              |+..                              
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~f~k~F~~~I~~Ll~~~~fW~~kr~P~pl~fd~~~~~~~~~~~~~~~~~~~~~  306 (640)
T 1y8q_B          227 RASNEDGDIKRISTKEWAKSTGYDPVKLFTKLFKDDIRYLLTMDKLWRKRKPPVPLDWAEVQSQGEETNASDQQNEPQLG  306 (640)
T ss_dssp             -------------CHHHHHHTTSCHHHHHHHHHTHHHHHHTTCGGGCSSSCCCCCCCHHHHHHC--------------CC
T ss_pred             hhhhhhhHHHHHhhhhHHHhHhHHHHHHHHHHHhhHHHHHHhCcccccCCCCCCCcccCccccccccccccccccccccC
Confidence                           1                              1100                              


Q ss_pred             --------------------------------hcCCCCCCCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCcc
Q 020259          234 --------------------------------HSGKSFDPDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPA  281 (328)
Q Consensus       234 --------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  281 (328)
                                                      ..+..|++|++.|++|+++++|++++.|+|++.+...+++++++++|+
T Consensus       307 ~~d~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~FdKDDd~h~dFV~aaaNlRA~~y~I~~~~~~~~K~iAG~IIPA  386 (640)
T 1y8q_B          307 LKDQQVLDVKSYARLFSKSIETLRVHLAEKGDGAELIWDKDDPSAMDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPA  386 (640)
T ss_dssp             CGGGSCCCHHHHHHHHHHHHHHHHHHHHHTCTTCCCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHTCCCC
T ss_pred             CChhhhcChhhhhhhHHHHHHHHHHHhhhcccCCCcccCCCCHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCcccc
Confidence                                            012357888999999999999999999999999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHhcCCCCCCceEE
Q 020259          282 IASTNAIISAACALETLKIASGCSKTLSNYLT  313 (328)
Q Consensus       282 l~p~~aivGG~~aqEviK~it~~~~pi~N~~~  313 (328)
                      |++|+|||+|+++.|++|+++++.+-..|.|+
T Consensus       387 IATTnAiVaGl~~lE~~Kvl~~~~~~~kn~f~  418 (640)
T 1y8q_B          387 IATTNAVIAGLIVLEGLKILSGKIDQCRTIFL  418 (640)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCGGGCEEEEE
T ss_pred             hhhHHHHHHHHHHHHHHHHHhccHHhhhhhhe
Confidence            99999999999999999999986554445554

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-50  Score=419.44  Aligned_cols=205  Identities=34%  Similarity=0.565  Sum_probs=188.5

Q ss_pred             ccchhhhhhhhcC----------------CCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCC-----C
Q 020259            7 SRSRDLDKLLLRA----------------GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGF-----K   65 (328)
Q Consensus         7 ~~~~~~~~~~~~~----------------~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gv-----g   65 (328)
                      .+|.++|.+..++                +||+||+++||.++|++| ++++|+|||+||+||+++++|+++||     |
T Consensus       377 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~Ry~rq~~l~G~~~q~kL-~~~~VlvVGaGGlGsevlk~La~~Gv~~g~~G  455 (1015)
T 3cmm_A          377 KQFMYFDSLESLPDPKNFPRNEKTTQPVNSRYDNQIAVFGLDFQKKI-ANSKVFLVGSGAIGCEMLKNWALLGLGSGSDG  455 (1015)
T ss_dssp             CSEEEEECGGGSCCTTTSCCSTTTTSCCSSTTHHHHHHHCHHHHHHH-HTCEEEEECCSHHHHHHHHHHHHHTTTCSTTC
T ss_pred             cceEEecchhhccccccCCCChhhccchhhhhhhHHHhcCHHHHHHH-hcCeEEEEecCHHHHHHHHHHHHcCcCcCCCC
Confidence            5777777665433                589999999999999999 69999999999999999999999999     9


Q ss_pred             eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCc--EEEEEecccCCcc-----hhhhccCCEEEecCC
Q 020259           66 NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV--NIVPHFCRIEDKD-----ISFYNDFNIIVLGLD  138 (328)
Q Consensus        66 ~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v--~v~~~~~~~~~~~-----~~~~~~~dvVi~~~d  138 (328)
                      +|+|+|+|.|+.+||+|||+|+.+|+|++||++++++++++||++  +|+++...+...+     .++++++|+||+|+|
T Consensus       456 ~i~lvD~D~Ve~SNLnRQ~lf~~~dvG~~Ka~~aa~~l~~iNP~v~~~v~~~~~~i~~~~~~~~~~~~~~~~D~Vi~a~D  535 (1015)
T 3cmm_A          456 YIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNALD  535 (1015)
T ss_dssp             EEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCGGGTTTEEEECCCCSGGGTTTSCHHHHHHCSEEEECCS
T ss_pred             eEEEEeCCEeccccccccccCChhhCCCHHHHHHHHHHHHHCCCCcceEEEEecccCchhhhhccHhhhccCCEEEECCC
Confidence            999999999999999999999999999999999999999999999  9999999887533     578899999999999


Q ss_pred             CHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCCh
Q 020259          139 SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTA  218 (328)
Q Consensus       139 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~  218 (328)
                      +.++|.++|+.|             +..++|+|++++.|+.|++.+++|+.++||+|..+  |++...|.|++.++|+.+
T Consensus       536 n~~aR~~ln~~c-------------~~~~~Pli~~g~~G~~G~v~v~~p~~t~cy~c~~d--p~~~~~P~Ctl~~~P~~~  600 (1015)
T 3cmm_A          536 NVDARTYVDRRC-------------VFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRD--PPEKSIPLCTLRSFPNKI  600 (1015)
T ss_dssp             SHHHHHHHHHHH-------------HHHTCCEEEEEEETTEEEEEEECTTTBCCGGGSCC--CCCCCCCHHHHHTCCCSH
T ss_pred             CHHHHHHHHHHH-------------HHcCCcEEEeCCCccccceEEEeCCCCCccCCCCC--CCCCCCCcccccCCCCCc
Confidence            999999999999             56789999999999999999999999999999843  556889999999999999


Q ss_pred             hhHHHHHHH
Q 020259          219 AHCIEYAHL  227 (328)
Q Consensus       219 ~~~i~~~~~  227 (328)
                      +||+.|+..
T Consensus       601 ~h~i~wa~~  609 (1015)
T 3cmm_A          601 DHTIAWAKS  609 (1015)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987654

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-48  Score=409.24  Aligned_cols=281  Identities=18%  Similarity=0.233  Sum_probs=228.0

Q ss_pred             CCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHH
Q 020259           20 GNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVA   99 (328)
Q Consensus        20 ~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~   99 (328)
                      ++|+||+++||.++|+|| ++++|+|||+||+|+++||||+++|||+|+|+|+|.|+.+|++||||++.+|+|++||+++
T Consensus         8 ~rY~Rqi~l~G~~~q~rL-~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~   86 (1015)
T 3cmm_A            8 SLYSRQLYVLGKEAMLKM-QTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVT   86 (1015)
T ss_dssp             HHHHHHHHHSCHHHHHHH-TTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHH
T ss_pred             HhccchHhhcCHHHHHHH-hcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHH
Confidence            469999999999999999 6999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCC-CHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecce
Q 020259          100 AKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF  178 (328)
Q Consensus       100 ~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~  178 (328)
                      +++|+++||.++|+++...++   .+++++||+||+|.| +.+.+..+|++|             ++.++|+|.+++.|+
T Consensus        87 ~~~L~~lNP~v~v~~~~~~l~---~~~l~~~DvVv~~~d~~~~~r~~ln~~c-------------~~~~iplI~~~~~G~  150 (1015)
T 3cmm_A           87 RAKLAELNAYVPVNVLDSLDD---VTQLSQFQVVVATDTVSLEDKVKINEFC-------------HSSGIRFISSETRGL  150 (1015)
T ss_dssp             HHHHTTSCTTSCEEECCCCCC---STTGGGCSEEEECTTSCHHHHHHHHHHH-------------HHHTCEEEEEEEETT
T ss_pred             HHHHHHHCCCCeEEEecCCCC---HHHHhcCCEEEEcCCCCHHHHHHHHHHH-------------HHcCCCEEEEEeccc
Confidence            999999999999999988774   368899999999999 999999999999             677899999999999


Q ss_pred             eeeEEEEcCCCCCccccccCCCCCCCC-----------------------------------------------------
Q 020259          179 KGHARVIIPGVTPCFECTIWLFPPQVK-----------------------------------------------------  205 (328)
Q Consensus       179 ~G~v~~~~p~~~~c~~c~~~~~~~~~~-----------------------------------------------------  205 (328)
                      .|++++++   .+||.|..+...++..                                                     
T Consensus       151 ~G~v~~d~---~~~~~c~~~~~~~p~~~~i~~i~~p~~v~~l~~~~h~~~~gd~v~F~ev~gm~elN~~e~~~i~~~~p~  227 (1015)
T 3cmm_A          151 FGNTFVDL---GDEFTVLDPTGEEPRTGMVSDIEPDGTVTMLDDNRHGLEDGNFVRFSEVEGLDKLNDGTLFKVEVLGPF  227 (1015)
T ss_dssp             EEEEEEEC---CSCEEESBSSCCCCCEEEEEEECTTCEEEESTTCCCCCCTTCEEEEECCBTSGGGGSSCCEECEEEETT
T ss_pred             EEEEEecC---CCceEEeeCCCCCCccccccCCCCCceeEeeecccccCCCCCeEEEEeeccchhhcCccceeeEEcCCc
Confidence            99998865   4577776542111000                                                     


Q ss_pred             ---------------------------CCcccccC---CCC-------Chhh----HHHHHHHHhhhhhh-cCCCCCCCC
Q 020259          206 ---------------------------FPLCTLAE---TPR-------TAAH----CIEYAHLIKWDEVH-SGKSFDPDD  243 (328)
Q Consensus       206 ---------------------------~~~~~~~~---~~~-------~~~~----~i~~~~~~~~~~~~-~~~~~~~~~  243 (328)
                                                 ...+++..   .|.       .+..    .+.+..+..|...+ ++.|. ..+
T Consensus       228 ~f~I~Dts~~~~yv~~g~~~qvk~p~~i~f~~l~~~l~~p~~l~~d~~k~~~~~~l~~~~~Al~~F~~~~~gr~P~-~~~  306 (1015)
T 3cmm_A          228 AFRIGSVKEYGEYKKGGIFTEVKVPRKISFKSLKQQLSNPEFVFSDFAKFDRAAQLHLGFQALHQFAVRHNGELPR-TMN  306 (1015)
T ss_dssp             EEECSCCTTTCCCCBCCEEEECCCCEEECCCCHHHHHHSCCBCCSCGGGTHHHHHHHHHHHHHHHHHHHTTTCCCC-TTC
T ss_pred             eeEecccchhhhhhcCceeEEecCCcccCHHHHHHHHcChHHHHHHHhccCcchHHHHHHHHHHHHHHhcCCCCCC-CCC
Confidence                                       00000000   000       0111    12333444565555 44332 236


Q ss_pred             hhHHHHHHHHHHHHHHHhCCC-----CCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCc
Q 020259          244 PEHMQWVYSEAVKRAELFGIP-----GVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLS  318 (328)
Q Consensus       244 ~~~~~~l~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~  318 (328)
                      .++.+.+...++++.+.++++     ..+.++++++++....+++|+||++||++||||||++|||+.|++|||+||+.+
T Consensus       307 ~~D~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~el~pvaA~iGGivAQEVIKaiT~kf~Pi~~~~~~d~~~  386 (1015)
T 3cmm_A          307 DEDANELIKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVVAFFGGLVAQEVLKACSGKFTPLKQFMYFDSLE  386 (1015)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHCBSCCCCSEEEEECGG
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccccccCcHHHHHHHHHhcCcccCcHHHHhcchHHHHHHHHhccCCCcccceEEecchh
Confidence            778888888888887765532     345678999999999999999999999999999999999999999999999998


Q ss_pred             ccc
Q 020259          319 FFA  321 (328)
Q Consensus       319 ~~~  321 (328)
                      +..
T Consensus       387 ~~~  389 (1015)
T 3cmm_A          387 SLP  389 (1015)
T ss_dssp             GSC
T ss_pred             hcc
Confidence            765

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=100.00  E-value=1.6e-44  Score=327.28  Aligned_cols=223  Identities=22%  Similarity=0.321  Sum_probs=196.0

Q ss_pred             CCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259           20 GNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE   97 (328)
Q Consensus        20 ~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~   97 (328)
                      ++|+||+++  ||.++|++| ++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|++||++++++|+|++||+
T Consensus         7 ~ry~Rq~~l~~~g~~~q~~l-~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~   85 (251)
T 1zud_1            7 MRYSRQILLDDIALDGQQKL-LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQ   85 (251)
T ss_dssp             HHTHHHHTSTTTHHHHHHHH-HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHH
T ss_pred             HHhhhhcchhhcCHHHHHHH-hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHH
Confidence            579999999  999999999 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCcEEEEEecccCCc-chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeec
Q 020259           98 VAAKRVMERVSGVNIVPHFCRIEDK-DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE  176 (328)
Q Consensus        98 a~~~~l~~lnp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~  176 (328)
                      +++++++++||+++++.+...+... ..++++++|+||+|+|+.+.+..+|+.|             ++.++|+|.+++.
T Consensus        86 ~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~-------------~~~~~p~i~~~~~  152 (251)
T 1zud_1           86 VSQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAAC-------------VALNTPLITASAV  152 (251)
T ss_dssp             HHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHH-------------HHTTCCEEEEEEE
T ss_pred             HHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHH-------------HHhCCCEEEEecc
Confidence            9999999999999999998877653 3667899999999999999999999999             5678999999999


Q ss_pred             ceeeeEEEEcCCC-CCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHH
Q 020259          177 GFKGHARVIIPGV-TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAV  255 (328)
Q Consensus       177 G~~G~v~~~~p~~-~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  255 (328)
                      |+.|++.++.|+. ++||+|+++..++.                                         .          
T Consensus       153 g~~G~v~~~~p~~~~~c~~cl~~~~~~~-----------------------------------------~----------  181 (251)
T 1zud_1          153 GFGGQLMVLTPPWEQGCYRCLWPDNQEP-----------------------------------------E----------  181 (251)
T ss_dssp             BTEEEEEEECTTCTTCCHHHHCC---------------------------------------------------------
T ss_pred             ccceEEEEEccCCCCCcEEEeCCCCCCC-----------------------------------------C----------
Confidence            9999999988987 79999987421100                                         0          


Q ss_pred             HHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCcccccccc
Q 020259          256 KRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFFASAMQ  325 (328)
Q Consensus       256 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~~~~~~  325 (328)
                      ..+.                  ..+.++|+++++|+++|+|++|.|+|.+.|.+++++||+.++....+.
T Consensus       182 ~~~~------------------~~g~~~p~~~~~g~~~A~e~lk~l~g~~~~~~~~~~~d~~~~~~~~~~  233 (251)
T 1zud_1          182 RNCR------------------TAGVVGPVVGVMGTLQALEAIKLLSGIETPAGELRLFDGKSSQWRSLA  233 (251)
T ss_dssp             -----------------------CCBCHHHHHHHHHHHHHHHHHHHHTCCCCCSEEEEEETTTTEEEEEE
T ss_pred             Cccc------------------cCCchHHHHHHHHHHHHHHHHHHHhCCCCcCCcEEEEECCCCEEEEEe
Confidence            0000                  123578999999999999999999999999999999999988765544

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=100.00  E-value=3.1e-44  Score=330.09  Aligned_cols=228  Identities=24%  Similarity=0.373  Sum_probs=169.6

Q ss_pred             CCCCCCCCC--ccH-HHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHH
Q 020259           20 GNLVGPTFE--PGT-ELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKA   96 (328)
Q Consensus        20 ~~~~rq~~l--~G~-~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka   96 (328)
                      -+|+||+.|  ||. ++|+|| ++++|+|||+||+|++++++|+++|||+|+|+|+|.|+.+||+||+ |+++|+|++||
T Consensus        14 ~~y~r~i~L~~~G~~~~q~kL-~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~-~~~~diG~~Ka   91 (292)
T 3h8v_A           14 LVPRGSMALKRMGIVSDYEKI-RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKV   91 (292)
T ss_dssp             ------------------CGG-GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC-------------CCTTSBHH
T ss_pred             CCchHhhcccccChHHHHHHH-hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhccccc-CChhhcCchHH
Confidence            479999765  898 999999 6999999999999999999999999999999999999999999996 68999999999


Q ss_pred             HHHHHHHHhhCCCcEEEEEecccCC-cc-hhhh-----------ccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCcc
Q 020259           97 EVAAKRVMERVSGVNIVPHFCRIED-KD-ISFY-----------NDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPR  163 (328)
Q Consensus        97 ~a~~~~l~~lnp~v~v~~~~~~~~~-~~-~~~~-----------~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~  163 (328)
                      ++++++|+++||+++|+++...+.+ .+ .+++           +++|+||+|+||.++|.++|+.|             
T Consensus        92 ~aa~~~L~~iNP~v~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c-------------  158 (292)
T 3h8v_A           92 QAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTAC-------------  158 (292)
T ss_dssp             HHHHHHHHHHCTTSEEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHhhCCCcEEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHH-------------
Confidence            9999999999999999999998875 22 3444           68999999999999999999999             


Q ss_pred             ccccceEEEeeecc--eeeeEEEEcCCCCCccccccCCCCCCCC-CCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCC
Q 020259          164 EETIKPMVDGGTEG--FKGHARVIIPGVTPCFECTIWLFPPQVK-FPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFD  240 (328)
Q Consensus       164 ~~~~~p~i~~~~~G--~~G~v~~~~p~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  240 (328)
                      ++.++|+|++++.|  +.|++.++.|+.++||+|+++..+.... ...|                               
T Consensus       159 ~~~~~Pli~~gv~~~~~~Gqv~~~~pg~t~Cy~Cl~p~~~~~~~~~~~~-------------------------------  207 (292)
T 3h8v_A          159 NELGQTWMESGVSENAVSGHIQLIIPGESACFACAPPLVVAANIDEKTL-------------------------------  207 (292)
T ss_dssp             HHHTCCEEEEEECTTSSEEEEEEECTTTSCCTTSSSCCCCCCC-------------------------------------
T ss_pred             HHhCCCEEEeeeecceeEEEEEEECCCCCCCHhhcCCccccccccccch-------------------------------
Confidence            56789999999975  8999999999999999999753321100 0000                               


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCccc
Q 020259          241 PDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFF  320 (328)
Q Consensus       241 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~  320 (328)
                                        +           ..+.+   .+.++|+.+++|+++|+|++|+|+|.++| ..++.||+.+..
T Consensus       208 ------------------~-----------~~gvc---~~~l~~~~g~vgslqA~EalK~L~g~g~~-~~ll~~D~~~~~  254 (292)
T 3h8v_A          208 ------------------K-----------REGVC---AASLPTTMGVVAGILVQNVLKFLLNFGTV-SFYLGYNAMQDF  254 (292)
T ss_dssp             ------------------------------CHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTCSCC-CSEEEEETTTTB
T ss_pred             ------------------h-----------hcCcc---cCCcchHHHHHHHHHHHHHHHHHhCCCCC-CeEEEEECCCCc
Confidence                              0           00010   12378999999999999999999999887 689999999988


Q ss_pred             cccccc
Q 020259          321 ASAMQF  326 (328)
Q Consensus       321 ~~~~~~  326 (328)
                      ...+.+
T Consensus       255 ~~~~~~  260 (292)
T 3h8v_A          255 FPTMSM  260 (292)
T ss_dssp             CCEECC
T ss_pred             EEEEec
Confidence            776654

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=100.00  E-value=1.1e-42  Score=314.81  Aligned_cols=223  Identities=25%  Similarity=0.391  Sum_probs=195.0

Q ss_pred             CCCCCCCCC--ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259           20 GNLVGPTFE--PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE   97 (328)
Q Consensus        20 ~~~~rq~~l--~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~   97 (328)
                      ++|+||+++  ||.++|++| ++++|+|+|+||+|++++++|+++|+++|+|+|.|.|+++|++||++++++|+|++|++
T Consensus        10 ~ry~Rq~~l~~~g~~~q~~l-~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~   88 (249)
T 1jw9_B           10 LRYNRQIILRGFDFDGQEAL-KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVE   88 (249)
T ss_dssp             HHTHHHHTSTTTHHHHHHHH-HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHH
T ss_pred             HHhhheecccccCHHHHHHH-hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHH
Confidence            579999999  999999999 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCcEEEEEecccCCcc-hhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeec
Q 020259           98 VAAKRVMERVSGVNIVPHFCRIEDKD-ISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE  176 (328)
Q Consensus        98 a~~~~l~~lnp~v~v~~~~~~~~~~~-~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~  176 (328)
                      +++++++++||.++++.+...+.+.+ .++++++|+||+|+|+.+++..+++.|             ++.++|+|+++..
T Consensus        89 ~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~-------------~~~~~p~i~~~~~  155 (249)
T 1jw9_B           89 SARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGC-------------FAAKVPLVSGAAI  155 (249)
T ss_dssp             HHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHH-------------HHHTCCEEEEEEE
T ss_pred             HHHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHHH-------------HHcCCCEEEeeec
Confidence            99999999999999999888776533 567899999999999999999999999             5678999999999


Q ss_pred             ceeeeEEEEcCCC-CCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHH
Q 020259          177 GFKGHARVIIPGV-TPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAV  255 (328)
Q Consensus       177 G~~G~v~~~~p~~-~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  255 (328)
                      |+.|++.++.|+. ++||+|+++..++.  .+.                                               
T Consensus       156 g~~g~v~~~~p~~~~~c~~c~~~~~~~~--~~~-----------------------------------------------  186 (249)
T 1jw9_B          156 RMEGQITVFTYQDGEPCYRCLSRLFGEN--ALT-----------------------------------------------  186 (249)
T ss_dssp             BTEEEEEEECCCTTCCCTHHHHTTCCC-----------------------------------------------------
T ss_pred             cceEEEEEEeCCCCCCceEEECCCCCcc--ccc-----------------------------------------------
Confidence            9999999988876 79999987421110  000                                               


Q ss_pred             HHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCC-CceEEeecCcccccccc
Q 020259          256 KRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL-SNYLTYAQLSFFASAMQ  325 (328)
Q Consensus       256 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi-~N~~~fdg~~~~~~~~~  325 (328)
                        +.                  ..+.++|+++++|+++|+|++|+|+|..+|+ +++++||+.++....+.
T Consensus       187 --c~------------------~~g~~~~~~~~~g~~~a~e~lk~l~g~~~~~~~~~~~~d~~~~~~~~~~  237 (249)
T 1jw9_B          187 --CV------------------EAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMK  237 (249)
T ss_dssp             -----------------------CCBCHHHHHHHHHHHHHHHHHHHHTCSCCCBSEEEEEETTTTEEEEEE
T ss_pred             --cc------------------ccCCcchHHHHHHHHHHHHHHHHHhCCCCCccCeEEEEECCCCEEEEEe
Confidence              00                  1245789999999999999999999999887 57999999988755443

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=100.00  E-value=4.5e-38  Score=293.64  Aligned_cols=220  Identities=21%  Similarity=0.235  Sum_probs=182.8

Q ss_pred             CCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh
Q 020259           27 FEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER  106 (328)
Q Consensus        27 ~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l  106 (328)
                      |+|+..+|++| ++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+|++||++++.+|+|++||++++++++++
T Consensus        22 Rll~~~g~~kL-~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~i  100 (340)
T 3rui_A           22 RILPDLNLDII-KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI  100 (340)
T ss_dssp             HTCTTCCHHHH-HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHH
T ss_pred             hhcchhhHHHH-hCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHh
Confidence            67887788999 69999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEecccC----------------CcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceE
Q 020259          107 VSGVNIVPHFCRIE----------------DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPM  170 (328)
Q Consensus       107 np~v~v~~~~~~~~----------------~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~  170 (328)
                      ||+++++++...+.                +...++++++|+||+|+|+.++|..+|++|             +..++|+
T Consensus       101 nP~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c-------------~~~~~pl  167 (340)
T 3rui_A          101 FPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLS-------------NIENKTV  167 (340)
T ss_dssp             CTTCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGGGHHHHHHH-------------HHTTCEE
T ss_pred             CCCCEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHHHHHHHHHH-------------HHcCCcE
Confidence            99999999886541                112568899999999999999999999999             6789999


Q ss_pred             EEeeecceeeeEEEEc-------CCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCC
Q 020259          171 VDGGTEGFKGHARVII-------PGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDD  243 (328)
Q Consensus       171 i~~~~~G~~G~v~~~~-------p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  243 (328)
                      |.++ .|+.|++.+..       |+.++||+|.....|.......        .                          
T Consensus       168 I~aa-~G~~G~l~v~~g~~~~~~~~~~~Cy~C~~~~~p~~~~~~~--------t--------------------------  212 (340)
T 3rui_A          168 INAA-LGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDSLTDR--------T--------------------------  212 (340)
T ss_dssp             EEEE-ECSSEEEEEECCCCCSSCCCCBCCGGGGSSSCCCCCTTTC--------C--------------------------
T ss_pred             EEee-ecceEEEEEeecccccCCCCCCCeeeeCCCCCCccccccc--------c--------------------------
Confidence            9876 89999998753       5678999999765443110000        0                          


Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCC-----c--eEEeec
Q 020259          244 PEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLS-----N--YLTYAQ  316 (328)
Q Consensus       244 ~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~-----N--~~~fdg  316 (328)
                                                 ..+   .+. .++|+.+++|+++|+|++|+|++.+.|..     +  ...|||
T Consensus       213 ---------------------------~~~---~c~-v~~p~vg~igs~qA~E~lk~l~~~~~~~~~~~~~G~l~~~~d~  261 (340)
T 3rui_A          213 ---------------------------LDQ---MST-VTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRG  261 (340)
T ss_dssp             ---------------------------CGG---GGG-CSCHHHHHHHHHHHHHHHHHHTSCCCTTSSEETTEECCSEEEE
T ss_pred             ---------------------------cCC---Ccc-eecchHHHHHHHHHHHHHHHHhCCCCCccccCccCcccEEEec
Confidence                                       000   111 47999999999999999999999876642     2  278999


Q ss_pred             Cccccccccc
Q 020259          317 LSFFASAMQF  326 (328)
Q Consensus       317 ~~~~~~~~~~  326 (328)
                      ..+.-+.+.+
T Consensus       262 ~~~~f~~~~l  271 (340)
T 3rui_A          262 FLHNFSILKL  271 (340)
T ss_dssp             ETTTTEEEEE
T ss_pred             CcCCceEEEe
Confidence            8877666543

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=100.00  E-value=2.3e-36  Score=299.10  Aligned_cols=219  Identities=21%  Similarity=0.236  Sum_probs=181.1

Q ss_pred             CCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh
Q 020259           27 FEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER  106 (328)
Q Consensus        27 ~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l  106 (328)
                      |+|+..+|++| ++++|+|||+||+||++|++|+++|||+|+|+|+|.|+.+|++||++++.+|+|++||++++++|+++
T Consensus       314 Rllp~~g~ekL-~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~i  392 (615)
T 4gsl_A          314 RILPDLNLDII-KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI  392 (615)
T ss_dssp             HTCTTCCHHHH-HTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHH
T ss_pred             hhcchhhHHHH-hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhh
Confidence            67888888999 69999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEecccC----------------CcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceE
Q 020259          107 VSGVNIVPHFCRIE----------------DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPM  170 (328)
Q Consensus       107 np~v~v~~~~~~~~----------------~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~  170 (328)
                      ||.++++++...+.                +...++++++|+||+|+|+.++|..+|++|             +..++|+
T Consensus       393 NP~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~tR~~ln~~c-------------~~~~~Pl  459 (615)
T 4gsl_A          393 FPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLS-------------NIENKTV  459 (615)
T ss_dssp             CTTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGGGTHHHHHHH-------------HHTTCEE
T ss_pred             CCCcEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHHHHHHHHHHH-------------HHcCCeE
Confidence            99999999986541                112567899999999999999999999999             6789999


Q ss_pred             EEeeecceeeeEEEEc-------CCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCC
Q 020259          171 VDGGTEGFKGHARVII-------PGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDD  243 (328)
Q Consensus       171 i~~~~~G~~G~v~~~~-------p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  243 (328)
                      |.++ .|+.|++.+..       |+.++||+|.....|......        +                           
T Consensus       460 I~aa-lG~~Gql~v~~g~~~~~~~~~~~CY~Cl~~~~P~~~~~~--------r---------------------------  503 (615)
T 4gsl_A          460 INAA-LGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDSLTD--------R---------------------------  503 (615)
T ss_dssp             EEEE-ECSSEEEEEECCC------CCCCCTTTSCSSCTTSCTTT--------T---------------------------
T ss_pred             EEEE-ccceeEEEEeecccccCCCCCCCceeeCCCCCCcccccc--------c---------------------------
Confidence            9975 89999997753       467899999975444211000        0                           


Q ss_pred             hhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCC-----Cce--EEeec
Q 020259          244 PEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTL-----SNY--LTYAQ  316 (328)
Q Consensus       244 ~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi-----~N~--~~fdg  316 (328)
                                                   .....+. .++|+.+++|++.|+|++|+|+|.+.+.     .+.  ..|||
T Consensus       504 -----------------------------tl~~~C~-Vl~P~vgiigs~qA~EaLk~Ll~~g~~~~~~~~~G~l~~~~dg  553 (615)
T 4gsl_A          504 -----------------------------TLDQMCT-VTRPGVAMMASSLAVELMTSLLQTKYSGSETTVLGDIPHQIRG  553 (615)
T ss_dssp             -----------------------------TTTCTTC-CCCHHHHHHHHHHHHHHHHHHHSCCCTTSSEETTEECCSEEEE
T ss_pred             -----------------------------ccccCcc-eecchHHHHHHHHHHHHHHHHhCCCCcccCcCcCCCCcEEEec
Confidence                                         0000111 5799999999999999999999987654     232  68999


Q ss_pred             Ccccccccc
Q 020259          317 LSFFASAMQ  325 (328)
Q Consensus       317 ~~~~~~~~~  325 (328)
                      ..+.-..+.
T Consensus       554 ~~~~f~~~~  562 (615)
T 4gsl_A          554 FLHNFSILK  562 (615)
T ss_dssp             ETTTTEEEE
T ss_pred             cCCcceEEe
Confidence            887766554

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=100.00  E-value=5.4e-36  Score=296.41  Aligned_cols=166  Identities=25%  Similarity=0.318  Sum_probs=144.5

Q ss_pred             CCCCCCCC-------ccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCC
Q 020259           21 NLVGPTFE-------PGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGK   93 (328)
Q Consensus        21 ~~~rq~~l-------~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~   93 (328)
                      +|+||++|       |+..+|++| ++++|+|||+||+|+++|++|+++|||+|+|+|+|.|+.+|++||++++.+|+|+
T Consensus       302 ~~~~~lnL~lmrwrll~~~gq~kL-~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~  380 (598)
T 3vh1_A          302 DQSVDLNLKLMKWRILPDLNLDII-KNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGK  380 (598)
T ss_dssp             HHHHHHHHHHHHHHHCTTCCHHHH-HTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSS
T ss_pred             HHHHhhhhhhhhhhccchhhHHHH-hCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCc
Confidence            46777765       566779999 6999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhCCCcEEEEEecccC----------------CcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhcc
Q 020259           94 PKAEVAAKRVMERVSGVNIVPHFCRIE----------------DKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYE  157 (328)
Q Consensus        94 ~Ka~a~~~~l~~lnp~v~v~~~~~~~~----------------~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~  157 (328)
                      +||++++++|+++||.++++++...+.                +...++++++|+||+|+|+.++|..+|++|       
T Consensus       381 ~KAeaaa~~L~~iNP~v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatDn~~tR~lin~~c-------  453 (598)
T 3vh1_A          381 PKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLS-------  453 (598)
T ss_dssp             BHHHHHHHHHHHHCTTCEEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCSBGGGTHHHHHHH-------
T ss_pred             HHHHHHHHHHHhHCCCcEEEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHH-------
Confidence            999999999999999999999987651                112567899999999999999999999999       


Q ss_pred             CCCCccccccceEEEeeecceeeeEEEEc---C----CCCCccccccCCCC
Q 020259          158 TDDKPREETIKPMVDGGTEGFKGHARVII---P----GVTPCFECTIWLFP  201 (328)
Q Consensus       158 ~~~~~~~~~~~p~i~~~~~G~~G~v~~~~---p----~~~~c~~c~~~~~~  201 (328)
                            +..++|+|.+ ..|+.|++.+..   |    +.++||+|.....|
T Consensus       454 ------~~~~~plI~a-a~G~~Gqv~v~~g~~p~~~~~~~~Cy~Cl~~~~p  497 (598)
T 3vh1_A          454 ------NIENKTVINA-ALGFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAP  497 (598)
T ss_dssp             ------HHTTCEEEEE-EECSSEEEEEEEC--------CBCCTTTSCSSCS
T ss_pred             ------HhcCCCEEEE-EECCccEEEEEccCCCccCCCCCCceeecCccCC
Confidence                  5678999986 689999987653   2    35789999865433

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.95  E-value=2e-05  Score=71.76  Aligned_cols=78  Identities=22%  Similarity=0.272  Sum_probs=63.2

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ++++++|+|+||+|..++..|+..|+++|+|++.+                   ..|++.+++.+...+|.+++...+. 
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~-------------------~~~a~~la~~~~~~~~~~~i~~~~~-  185 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD-------------------TSRAQALADVINNAVGREAVVGVDA-  185 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS-------------------HHHHHHHHHHHHHHHTSCCEEEECS-
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC-------------------HHHHHHHHHHHHhhcCCceEEEcCH-
Confidence            47899999999999999999999999999998644                   2589999999998888777766531 


Q ss_pred             cCCcchhhhccCCEEEecCC
Q 020259          119 IEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d  138 (328)
                        +.-.+.+.++|+||+|+.
T Consensus       186 --~~l~~~l~~~DiVInaTp  203 (283)
T 3jyo_A          186 --RGIEDVIAAADGVVNATP  203 (283)
T ss_dssp             --TTHHHHHHHSSEEEECSS
T ss_pred             --HHHHHHHhcCCEEEECCC
Confidence              112355678999999976

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.65  E-value=0.00017  Score=66.51  Aligned_cols=81  Identities=17%  Similarity=0.174  Sum_probs=59.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +.++++|+|+||+|..++..|+..|+++|+|++.+.                --..|++.+++.+.+..+ +.+...+  
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~----------------~~~~~a~~la~~~~~~~~-~~~~~~~--  213 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD----------------DFYANAEKTVEKINSKTD-CKAQLFD--  213 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS----------------TTHHHHHHHHHHHHHHSS-CEEEEEE--
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC----------------chHHHHHHHHHHhhhhcC-CceEEec--
Confidence            478999999999999999999999999999987431                002588888888887653 4444432  


Q ss_pred             cCCc--chhhhccCCEEEecCC
Q 020259          119 IEDK--DISFYNDFNIIVLGLD  138 (328)
Q Consensus       119 ~~~~--~~~~~~~~dvVi~~~d  138 (328)
                      +.+.  -.+.+.++|+||+|+.
T Consensus       214 ~~~~~~l~~~l~~aDiIINaTp  235 (315)
T 3tnl_A          214 IEDHEQLRKEIAESVIFTNATG  235 (315)
T ss_dssp             TTCHHHHHHHHHTCSEEEECSS
T ss_pred             cchHHHHHhhhcCCCEEEECcc
Confidence            2221  1345678999999976

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.63  E-value=0.00022  Score=54.79  Aligned_cols=83  Identities=23%  Similarity=0.195  Sum_probs=53.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      ..+|+|+|+|++|..+++.|...|..+++++|.+.                   .|.+.+.      .+.+.+  ...++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~-------------------~~~~~~~------~~~~~~--~~~d~   57 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL-------------------AALAVLN------RMGVAT--KQVDA   57 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH-------------------HHHHHHH------TTTCEE--EECCT
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH-------------------HHHHHHH------hCCCcE--EEecC
Confidence            46899999999999999999999966899988431                   2222222      233333  23333


Q ss_pred             CCc--chhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          120 EDK--DISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       120 ~~~--~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .+.  -.+.++++|+||.++..... ..+.+.|
T Consensus        58 ~~~~~~~~~~~~~d~vi~~~~~~~~-~~~~~~~   89 (118)
T 3ic5_A           58 KDEAGLAKALGGFDAVISAAPFFLT-PIIAKAA   89 (118)
T ss_dssp             TCHHHHHHHTTTCSEEEECSCGGGH-HHHHHHH
T ss_pred             CCHHHHHHHHcCCCEEEECCCchhh-HHHHHHH
Confidence            322  24567899999999864333 3444455

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.61  E-value=0.00013  Score=63.95  Aligned_cols=84  Identities=13%  Similarity=0.184  Sum_probs=59.6

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      | ++.+|+|||.|.+|...++.|..+|. ++++++++.-                  +.   +.+ +.+. ..+.  ...
T Consensus        29 L-~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~------------------~~---l~~-l~~~-~~i~--~i~   81 (223)
T 3dfz_A           29 L-KGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVS------------------AE---INE-WEAK-GQLR--VKR   81 (223)
T ss_dssp             C-TTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCC------------------HH---HHH-HHHT-TSCE--EEC
T ss_pred             c-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCC------------------HH---HHH-HHHc-CCcE--EEE
Confidence            5 58999999999999999999999997 8999986421                  01   112 2221 2333  333


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      ...   ..+.+.++|+||.|+++.+....+...|
T Consensus        82 ~~~---~~~dL~~adLVIaAT~d~~~N~~I~~~a  112 (223)
T 3dfz_A           82 KKV---GEEDLLNVFFIVVATNDQAVNKFVKQHI  112 (223)
T ss_dssp             SCC---CGGGSSSCSEEEECCCCTHHHHHHHHHS
T ss_pred             CCC---CHhHhCCCCEEEECCCCHHHHHHHHHHH
Confidence            322   3556789999999999987777776666

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.47  E-value=0.00037  Score=64.17  Aligned_cols=82  Identities=21%  Similarity=0.235  Sum_probs=59.2

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ++++++|+|+||.|..++..|...|+++|+|++.+.                -...|++.+++.+....+ ..+....  
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~----------------~~~~~a~~la~~~~~~~~-~~v~~~~--  207 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKD----------------DFFEKAVAFAKRVNENTD-CVVTVTD--  207 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS----------------THHHHHHHHHHHHHHHSS-CEEEEEE--
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCC----------------chHHHHHHHHHHhhhccC-cceEEec--
Confidence            478999999999999999999999999999986431                002578888888887543 3444332  


Q ss_pred             cCCc--chhhhccCCEEEecCCC
Q 020259          119 IEDK--DISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~--~~~~~~~~dvVi~~~d~  139 (328)
                      +.+.  ..+.+.++|+||+|+..
T Consensus       208 ~~~l~~~~~~l~~~DiIINaTp~  230 (312)
T 3t4e_A          208 LADQHAFTEALASADILTNGTKV  230 (312)
T ss_dssp             TTCHHHHHHHHHHCSEEEECSST
T ss_pred             hHhhhhhHhhccCceEEEECCcC
Confidence            1111  13456789999999763

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.24  E-value=0.0023  Score=52.14  Aligned_cols=38  Identities=24%  Similarity=0.389  Sum_probs=32.5

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +++ ...+|+|+|+|.+|..+++.|...|. +++++|.+.
T Consensus        15 ~~~-~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~   52 (155)
T 2g1u_A           15 KKQ-KSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNE   52 (155)
T ss_dssp             --C-CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCG
T ss_pred             ccc-CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            345 57899999999999999999999997 899998764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.22  E-value=0.0039  Score=49.70  Aligned_cols=84  Identities=14%  Similarity=0.199  Sum_probs=54.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +..+|+|+|+|.+|..+++.|...|. +++++|.+.                   .++    +.+++.  .+.  ....+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~-------------------~~~----~~~~~~--~~~--~~~gd   56 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSK-------------------EKI----ELLEDE--GFD--AVIAD   56 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHH----HHHHHT--TCE--EEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCH-------------------HHH----HHHHHC--CCc--EEECC
Confidence            35789999999999999999999998 799998542                   122    222222  222  22233


Q ss_pred             cCCcc---hhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          119 IEDKD---ISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       119 ~~~~~---~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      ..+..   ..-+.++|+||.++++.+....+-..+
T Consensus        57 ~~~~~~l~~~~~~~~d~vi~~~~~~~~n~~~~~~a   91 (141)
T 3llv_A           57 PTDESFYRSLDLEGVSAVLITGSDDEFNLKILKAL   91 (141)
T ss_dssp             TTCHHHHHHSCCTTCSEEEECCSCHHHHHHHHHHH
T ss_pred             CCCHHHHHhCCcccCCEEEEecCCHHHHHHHHHHH
Confidence            32211   112468999999998877666555555

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.16  E-value=0.001  Score=60.03  Aligned_cols=73  Identities=23%  Similarity=0.280  Sum_probs=53.2

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ++++++|+|+||.|..++..|...|+.+|++++.+                   ..|++.+++.+..  ..  +...+  
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~-------------------~~~a~~la~~~~~--~~--~~~~~--  173 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRD-------------------MAKALALRNELDH--SR--LRISR--  173 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHCC--TT--EEEEC--
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhcc--CC--eeEee--
Confidence            47899999999999999999999999999998632                   1478888777654  22  23221  


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      +.+.. +  .++|+||+|+..
T Consensus       174 ~~~l~-~--~~~DivInaTp~  191 (272)
T 3pwz_A          174 YEALE-G--QSFDIVVNATSA  191 (272)
T ss_dssp             SGGGT-T--CCCSEEEECSSG
T ss_pred             HHHhc-c--cCCCEEEECCCC
Confidence            11111 1  689999999864

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.07  E-value=0.0014  Score=59.30  Aligned_cols=73  Identities=26%  Similarity=0.303  Sum_probs=54.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      .+++++|+|+||.|..++..|...|+.+|++++.+                   ..|++.+++.+.... .+.  ..+  
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~-------------------~~~a~~la~~~~~~~-~~~--~~~--  180 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRT-------------------FAKAEQLAELVAAYG-EVK--AQA--  180 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS-------------------HHHHHHHHHHHGGGS-CEE--EEE--
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC-------------------HHHHHHHHHHhhccC-Cee--Eee--
Confidence            46799999999999999999999999999998732                   257888888877643 233  221  


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      +.    +...++|+||+|+..
T Consensus       181 ~~----~l~~~aDiIInaTp~  197 (281)
T 3o8q_A          181 FE----QLKQSYDVIINSTSA  197 (281)
T ss_dssp             GG----GCCSCEEEEEECSCC
T ss_pred             HH----HhcCCCCEEEEcCcC
Confidence            11    111689999999764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.99  E-value=0.0035  Score=49.36  Aligned_cols=33  Identities=33%  Similarity=0.595  Sum_probs=28.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~   36 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDID   36 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            3579999999999999999999996 79998843

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.98  E-value=0.0074  Score=48.89  Aligned_cols=89  Identities=15%  Similarity=0.078  Sum_probs=57.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      .+.+|+|+|+|.+|..+++.|...|. .++++|.+.-                  .|++.+.+.   ...++.+  ...+
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~------------------~~~~~~~~~---~~~~~~~--i~gd   57 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPE------------------DDIKQLEQR---LGDNADV--IPGD   57 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCH------------------HHHHHHHHH---HCTTCEE--EESC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCh------------------HHHHHHHHh---hcCCCeE--EEcC
Confidence            36789999999999999999999997 7999985410                  122222221   1223333  3333


Q ss_pred             cCCcc---hhhhccCCEEEecCCCHHHHHHHHHHHH
Q 020259          119 IEDKD---ISFYNDFNIIVLGLDSIEARSYINAVAC  151 (328)
Q Consensus       119 ~~~~~---~~~~~~~dvVi~~~d~~~~~~~l~~~~~  151 (328)
                      ..+..   ..-++++|+||.++++.+....+-..++
T Consensus        58 ~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~   93 (153)
T 1id1_A           58 SNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAK   93 (153)
T ss_dssp             TTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHcChhhCCEEEEecCChHHHHHHHHHHH
Confidence            33221   2236789999999988766666655663

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.97  E-value=0.004  Score=59.25  Aligned_cols=89  Identities=16%  Similarity=0.182  Sum_probs=58.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC--CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGF--KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gv--g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      .+|+|+|+|++|..+++.|+..|-  ..++++|.+.                   .|++.+++.+....+ .++.....+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~-------------------~~~~~la~~l~~~~~-~~~~~~~~D   61 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTL-------------------SKCQEIAQSIKAKGY-GEIDITTVD   61 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCH-------------------HHHHHHHHHHHHTTC-CCCEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCH-------------------HHHHHHHHHhhhhcC-CceEEEEec
Confidence            479999999999999999999883  5899987432                   467777777665331 123344444


Q ss_pred             cCCc--chhhhcc--CCEEEecCCCHHHHHHHHHHH
Q 020259          119 IEDK--DISFYND--FNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       119 ~~~~--~~~~~~~--~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      +.+.  -.+.+++  .|+||.++..... ..+.+.|
T Consensus        62 ~~d~~~l~~~l~~~~~DvVin~ag~~~~-~~v~~a~   96 (405)
T 4ina_A           62 ADSIEELVALINEVKPQIVLNIALPYQD-LTIMEAC   96 (405)
T ss_dssp             TTCHHHHHHHHHHHCCSEEEECSCGGGH-HHHHHHH
T ss_pred             CCCHHHHHHHHHhhCCCEEEECCCcccC-hHHHHHH
Confidence            4332  2445565  8999998765432 3344444

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.96  E-value=0.0011  Score=53.35  Aligned_cols=72  Identities=19%  Similarity=0.225  Sum_probs=51.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ...+|+|+|+|++|..+++.|...|+. ++++|.+.                   .|++.+++.+.     ..+..    
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~~-------------------~~~~~~a~~~~-----~~~~~----   70 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRNI-------------------DHVRAFAEKYE-----YEYVL----   70 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESCH-------------------HHHHHHHHHHT-----CEEEE----
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCH-------------------HHHHHHHHHhC-----CceEe----
Confidence            478999999999999999999999986 99988432                   35555444432     22221    


Q ss_pred             cCCcchhhhccCCEEEecCCCH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSI  140 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~  140 (328)
                       .+...+.+.++|+||.|+...
T Consensus        71 -~~~~~~~~~~~Divi~at~~~   91 (144)
T 3oj0_A           71 -INDIDSLIKNNDVIITATSSK   91 (144)
T ss_dssp             -CSCHHHHHHTCSEEEECSCCS
T ss_pred             -ecCHHHHhcCCCEEEEeCCCC
Confidence             122345678999999998764

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.95  E-value=0.007  Score=47.77  Aligned_cols=37  Identities=22%  Similarity=0.514  Sum_probs=30.4

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ++ +..+|+|+|+|.+|..+++.|...|. +++++|.+.
T Consensus         3 ~~-~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~   39 (144)
T 2hmt_A            3 RI-KNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINE   39 (144)
T ss_dssp             ----CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCH
T ss_pred             CC-cCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            45 46789999999999999999999997 688888653

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.93  E-value=0.0016  Score=58.67  Aligned_cols=103  Identities=15%  Similarity=0.146  Sum_probs=59.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcc-CCccccCCCCCCCCChHHHHHHHHHHh-hCCC-----cE
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS-NLNRQFLFRMEDVGKPKAEVAAKRVME-RVSG-----VN  111 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~-nl~r~~l~~~~diG~~Ka~a~~~~l~~-lnp~-----v~  111 (328)
                      ++.+|+|||+|.+|...++.|...|. +++++|++.-..- .--.. +...  -+. ++.  ....++ +++.     -.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~~~~~l~~~~~~-l~~~--~~~-~~~--~~~~~~~~~~~~~~~~g~   84 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPKFGK-FIQN--KDQ-PDY--REDAKRFINPNWDPTKNE   84 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTTHHHHHCG-GGC----------------CEEECTTCCTTSCC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCCCcchhHHHHH-HHhc--ccc-ccc--cchhhcccccccccccCC
Confidence            58899999999999999999999997 7999997652110 00000 1000  000 000  000000 0111     12


Q ss_pred             E-EEEecccCCcchhhhc------cCCEEEecCCCHHHHHHHHHHHH
Q 020259          112 I-VPHFCRIEDKDISFYN------DFNIIVLGLDSIEARSYINAVAC  151 (328)
Q Consensus       112 v-~~~~~~~~~~~~~~~~------~~dvVi~~~d~~~~~~~l~~~~~  151 (328)
                      + ......+   ..+.+.      ++|+||.|+++.+....+...|+
T Consensus        85 i~~~i~~~~---~~~dL~~l~~~~~adlViaat~d~~~n~~I~~~Ar  128 (274)
T 1kyq_A           85 IYEYIRSDF---KDEYLDLENENDAWYIIMTCIPDHPESARIYHLCK  128 (274)
T ss_dssp             CSEEECSSC---CGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHH
T ss_pred             eeEEEcCCC---CHHHHhhcccCCCeEEEEEcCCChHHHHHHHHHHH
Confidence            2 3333322   234455      89999999999888888888883

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.90  E-value=0.001  Score=60.70  Aligned_cols=75  Identities=23%  Similarity=0.270  Sum_probs=52.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ...+|+|+|+|++|..++..|...|+.+++++|.+.                   .|++.+++.+....+  .+  ..  
T Consensus       140 ~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~-------------------~ka~~la~~~~~~~~--~~--~~--  194 (297)
T 2egg_A          140 DGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV-------------------EKAERLVREGDERRS--AY--FS--  194 (297)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH-------------------HHHHHHHHHSCSSSC--CE--EC--
T ss_pred             CCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHhhhccC--ce--ee--
Confidence            478999999999999999999999999999987432                   466666655432111  11  10  


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      + +...+.+.++|+||+|+..
T Consensus       195 ~-~~~~~~~~~aDivIn~t~~  214 (297)
T 2egg_A          195 L-AEAETRLAEYDIIINTTSV  214 (297)
T ss_dssp             H-HHHHHTGGGCSEEEECSCT
T ss_pred             H-HHHHhhhccCCEEEECCCC
Confidence            1 1123456789999999774

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.87  E-value=0.0059  Score=56.06  Aligned_cols=95  Identities=15%  Similarity=0.105  Sum_probs=59.6

Q ss_pred             CccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC
Q 020259           28 EPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV  107 (328)
Q Consensus        28 l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln  107 (328)
                      +|+.+.--.- +..+|.|||+|.+|..++++|+..|..+++++|.+.-..                .|++...+.+.+. 
T Consensus        13 ~~~~~~~~~~-M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~----------------~~~~~~~~~~~~~-   74 (317)
T 4ezb_A           13 LGTENLYFQS-MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDP----------------AASGALRARAAEL-   74 (317)
T ss_dssp             --CCCHHHHT-SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCT----------------TTHHHHHHHHHHT-
T ss_pred             cCcccCcccc-cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccc----------------cchHHHHHHHHHC-
Confidence            4554433222 357899999999999999999999944899988543110                1344445555443 


Q ss_pred             CCcEEEEEecccCC-cchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          108 SGVNIVPHFCRIED-KDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       108 p~v~v~~~~~~~~~-~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                       .+         .. ...+.++++|+||.|+.+......+..+.
T Consensus        75 -g~---------~~~s~~e~~~~aDvVi~avp~~~~~~~~~~i~  108 (317)
T 4ezb_A           75 -GV---------EPLDDVAGIACADVVLSLVVGAATKAVAASAA  108 (317)
T ss_dssp             -TC---------EEESSGGGGGGCSEEEECCCGGGHHHHHHHHG
T ss_pred             -CC---------CCCCHHHHHhcCCEEEEecCCHHHHHHHHHHH
Confidence             22         11 23456678899998887766655554443

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.86  E-value=0.004  Score=60.23  Aligned_cols=83  Identities=14%  Similarity=0.082  Sum_probs=58.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ++.+|+|||.|.+|...++.|..+|. +++++|++.-.                     .+ +.+.+ ...+  +.....
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~~~~---------------------~~-~~l~~-~~~i--~~~~~~   64 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIP---------------------QF-TVWAN-EGML--TLVEGP   64 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCH---------------------HH-HHHHT-TTSC--EEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCCCCH---------------------HH-HHHHh-cCCE--EEEECC
Confidence            58899999999999999999999997 89999964210                     11 11111 1233  333333


Q ss_pred             cCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .   ..+.+.++|+||.++++.+....+...|
T Consensus        65 ~---~~~~l~~~~lVi~at~~~~~n~~i~~~a   93 (457)
T 1pjq_A           65 F---DETLLDSCWLAIAATDDDTVNQRVSDAA   93 (457)
T ss_dssp             C---CGGGGTTCSEEEECCSCHHHHHHHHHHH
T ss_pred             C---CccccCCccEEEEcCCCHHHHHHHHHHH
Confidence            2   3455679999999999987777777777

>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}

Probab=96.83  E-value=0.0027  Score=57.26  Aligned_cols=50  Identities=18%  Similarity=0.422  Sum_probs=34.9

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHhCCCCCc-hhhhHhhhhc-cCccccchh
Q 020259          237 KSFDPDDPEHMQWVYSEAVKRAELFGIPGVT-YSLTQGVVKN-IIPAIASTN  286 (328)
Q Consensus       237 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~-~~~~~~~~~~-~~~~l~p~~  286 (328)
                      ..++..++.|+++|..++++.+..||+++.. ...+.+++.. .+|++.|..
T Consensus       137 L~fd~~~~~h~~fI~aaa~L~A~~~gi~~~~d~~~i~~~~~~~~vp~f~p~~  188 (276)
T 1z7l_A          137 LTFDVNNTLHLDYVMAAANLFAQTYGLTGSQDRAAVASLLQSVQVPEFTPKS  188 (276)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTCCCCCCCCCS
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcCCCCCcCCcc
Confidence            4456667889999999999999999998632 2344444444 356655544

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.73  E-value=0.012  Score=49.13  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=30.3

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALS-GFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~-Gvg~itlvD~d   73 (328)
                      .+.+|+|+|+|.+|..+++.|... |. +++++|.+
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~   72 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIR   72 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECC
Confidence            367999999999999999999999 97 79998854

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.69  E-value=0.0095  Score=54.49  Aligned_cols=34  Identities=15%  Similarity=0.256  Sum_probs=30.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|.|||+|.+|..++++|+..|...++++|.+
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4689999999999999999999998789999864

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.69  E-value=0.0037  Score=56.26  Aligned_cols=67  Identities=18%  Similarity=0.261  Sum_probs=49.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      .++|+|+|+||.|..++..|...|+.+|+|++.+                   ..|++.+++.+..     .+   ....
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt-------------------~~ka~~la~~~~~-----~~---~~~~  171 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN-------------------VKTGQYLAALYGY-----AY---INSL  171 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC-------------------HHHHHHHHHHHTC-----EE---ESCC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC-------------------HHHHHHHHHHcCC-----cc---chhh
Confidence            4689999999999999999999999999998632                   1477777766531     11   1111


Q ss_pred             CCcchhhhccCCEEEecCCC
Q 020259          120 EDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d~  139 (328)
                           . ..++|+||+|+..
T Consensus       172 -----~-~~~~DivInaTp~  185 (271)
T 1npy_A          172 -----E-NQQADILVNVTSI  185 (271)
T ss_dssp             -----T-TCCCSEEEECSST
T ss_pred             -----h-cccCCEEEECCCC
Confidence                 1 3679999999774

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.64  E-value=0.0057  Score=57.20  Aligned_cols=80  Identities=14%  Similarity=0.138  Sum_probs=49.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      +.||+|+|+|.+|..+++.|+..  ..++++|-+.                   .++       .+..+.+..  ..-++
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~~--~~v~~~~~~~-------------------~~~-------~~~~~~~~~--~~~d~   65 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKDE--FDVYIGDVNN-------------------ENL-------EKVKEFATP--LKVDA   65 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTT--SEEEEEESCH-------------------HHH-------HHHTTTSEE--EECCT
T ss_pred             ccEEEEECCCHHHHHHHHHHhcC--CCeEEEEcCH-------------------HHH-------HHHhccCCc--EEEec
Confidence            45799999999999999999643  4777776321                   222       222333322  22223


Q ss_pred             CCc--chhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          120 EDK--DISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       120 ~~~--~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .+.  -.+.++++|+||+|+.... -..+.+.|
T Consensus        66 ~d~~~l~~~~~~~DvVi~~~p~~~-~~~v~~~~   97 (365)
T 3abi_A           66 SNFDKLVEVMKEFELVIGALPGFL-GFKSIKAA   97 (365)
T ss_dssp             TCHHHHHHHHTTCSEEEECCCGGG-HHHHHHHH
T ss_pred             CCHHHHHHHHhCCCEEEEecCCcc-cchHHHHH
Confidence            322  2556789999999987642 23455566

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.62  E-value=0.018  Score=45.93  Aligned_cols=83  Identities=24%  Similarity=0.310  Sum_probs=53.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      +.+|+|+|+|.+|..+++.|...|. .++++|.+.                   .++    +.+++.  .+.+  ...+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~-------------------~~~----~~~~~~--g~~~--i~gd~   58 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSR-------------------TRV----DELRER--GVRA--VLGNA   58 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHH----HHHHHT--TCEE--EESCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHH----HHHHHc--CCCE--EECCC
Confidence            5789999999999999999999998 799998543                   122    233332  3332  22332


Q ss_pred             CCcc---hhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          120 EDKD---ISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       120 ~~~~---~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .+..   ..-++++|+||.++++......+-..+
T Consensus        59 ~~~~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a   92 (140)
T 3fwz_A           59 ANEEIMQLAHLECAKWLILTIPNGYEAGEIVASA   92 (140)
T ss_dssp             TSHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHH
T ss_pred             CCHHHHHhcCcccCCEEEEECCChHHHHHHHHHH
Confidence            2211   112468999999988766544443444

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.57  E-value=0.0089  Score=55.18  Aligned_cols=76  Identities=12%  Similarity=0.233  Sum_probs=52.9

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC----CcEE
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS----GVNI  112 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp----~v~v  112 (328)
                      | +..+|.|||+|.+|..++..|+..|.++++|+|-+.                   .|++..+..|+..++    ..++
T Consensus         5 m-~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~v   64 (324)
T 3gvi_A            5 M-ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE-------------------GTPQGKGLDIAESSPVDGFDAKF   64 (324)
T ss_dssp             --CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS-------------------SHHHHHHHHHHHHHHHHTCCCCE
T ss_pred             C-cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc-------------------hhHHHHHHHHhchhhhcCCCCEE
Confidence            5 577999999999999999999999988899988332                   344444445554432    3444


Q ss_pred             EEEecccCCcchhhhccCCEEEecCC
Q 020259          113 VPHFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      ....      +.+-++++|+||.+..
T Consensus        65 ~~t~------d~~a~~~aDiVIiaag   84 (324)
T 3gvi_A           65 TGAN------DYAAIEGADVVIVTAG   84 (324)
T ss_dssp             EEES------SGGGGTTCSEEEECCS
T ss_pred             EEeC------CHHHHCCCCEEEEccC
Confidence            4321      2356789999988854

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.52  E-value=0.0078  Score=51.80  Aligned_cols=82  Identities=12%  Similarity=0.174  Sum_probs=54.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      +|+|+|+|.+|..+++.|...|. .++++|.+.                   .+++.    +.+. .++.  ....+..+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~-------------------~~~~~----l~~~-~~~~--~i~gd~~~   54 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDR-------------------ELCEE----FAKK-LKAT--IIHGDGSH   54 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHHHH----HHHH-SSSE--EEESCTTS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHHHH----HHHH-cCCe--EEEcCCCC
Confidence            69999999999999999999998 799998543                   12222    2221 1222  23333322


Q ss_pred             c---chhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          122 K---DISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       122 ~---~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .   ...-++++|+||.++++......+...+
T Consensus        55 ~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a   86 (218)
T 3l4b_C           55 KEILRDAEVSKNDVVVILTPRDEVNLFIAQLV   86 (218)
T ss_dssp             HHHHHHHTCCTTCEEEECCSCHHHHHHHHHHH
T ss_pred             HHHHHhcCcccCCEEEEecCCcHHHHHHHHHH
Confidence            1   1223578999999998877666665555

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.51  E-value=0.0018  Score=58.65  Aligned_cols=35  Identities=23%  Similarity=0.297  Sum_probs=31.8

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..++++|+|+||.|..++..|...|+++|++++.+
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt  155 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRN  155 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESC
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            37799999999999999999999999999998633

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.49  E-value=0.0075  Score=54.16  Aligned_cols=31  Identities=32%  Similarity=0.579  Sum_probs=29.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      .++|+|+|+||.|..++..|...| .+|++++
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~n  148 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLN  148 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEe
Confidence            679999999999999999999999 8999986

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.48  E-value=0.0099  Score=53.37  Aligned_cols=35  Identities=26%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      + +..+|+|||+|++|..+++.|...|+ +++++|.+
T Consensus       127 ~-~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~  161 (275)
T 2hk9_A          127 V-KEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRT  161 (275)
T ss_dssp             G-GGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             c-CCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECC
Confidence            5 47899999999999999999999999 99998743

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.46  E-value=0.016  Score=51.28  Aligned_cols=80  Identities=19%  Similarity=0.276  Sum_probs=52.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      ..+|.|||+|.+|..+++.|...|...++++|.+.                   .+++.+.+.+     .+.+  .    
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~-------------------~~~~~~~~~~-----g~~~--~----   59 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE-------------------ESARELAQKV-----EAEY--T----   59 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH-------------------HHHHHHHHHT-----TCEE--E----
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH-------------------HHHHHHHHHc-----CCce--e----
Confidence            46899999999999999999999985578877322                   2333333221     1221  1    


Q ss_pred             CCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          120 EDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                       ....+.++++|+||.|+.+......+..+.
T Consensus        60 -~~~~~~~~~~Dvvi~av~~~~~~~v~~~l~   89 (266)
T 3d1l_A           60 -TDLAEVNPYAKLYIVSLKDSAFAELLQGIV   89 (266)
T ss_dssp             -SCGGGSCSCCSEEEECCCHHHHHHHHHHHH
T ss_pred             -CCHHHHhcCCCEEEEecCHHHHHHHHHHHH
Confidence             123445678999999988766555554443

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.45  E-value=0.0067  Score=56.04  Aligned_cols=73  Identities=19%  Similarity=0.362  Sum_probs=54.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC---CcEEEEE
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS---GVNIVPH  115 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp---~v~v~~~  115 (328)
                      ..+|.|+|+|.+|+.++..|+..|+ ++|.|+|-+                   ..|++..+..|+...|   .+++.. 
T Consensus         9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~-------------------~~k~~g~a~DL~~~~~~~~~~~i~~-   68 (326)
T 3vku_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF-------------------KDKTKGDAIDLEDALPFTSPKKIYS-   68 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHTTGGGSCCCEEEE-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC-------------------hHHHHHHHhhHhhhhhhcCCcEEEE-
Confidence            5789999999999999999999998 589999832                   3567777777776544   333321 


Q ss_pred             ecccCCcchhhhccCCEEEecCC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                            .+.+-++++|+||.+..
T Consensus        69 ------~~~~a~~~aDiVvi~ag   85 (326)
T 3vku_A           69 ------AEYSDAKDADLVVITAG   85 (326)
T ss_dssp             ------CCGGGGTTCSEEEECCC
T ss_pred             ------CcHHHhcCCCEEEECCC
Confidence                  23456899999988754

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.40  E-value=0.014  Score=50.09  Aligned_cols=36  Identities=14%  Similarity=0.338  Sum_probs=29.2

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++ ...+|.|||+|.+|+.+++.|+..|. +++++|.+
T Consensus        16 ~~-~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~   51 (209)
T 2raf_A           16 YF-QGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSK   51 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTT
T ss_pred             cc-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            45 57889999999999999999999997 78888744

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.31  E-value=0.013  Score=53.96  Aligned_cols=75  Identities=13%  Similarity=0.235  Sum_probs=52.8

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC----CCcEEEE
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV----SGVNIVP  114 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln----p~v~v~~  114 (328)
                      +..+|.|||+|.+|+.++..|+..|.++++++|-+.                   .|++..+..|+...    ..+++..
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~-------------------~~~~g~a~dL~~~~~~~~~~~~v~~   64 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ-------------------GMPNGKALDLLQTCPIEGVDFKVRG   64 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh-------------------HHHHHHHHHHHhhhhhcCCCcEEEE
Confidence            467899999999999999999999988899988432                   34444445555432    2445543


Q ss_pred             EecccCCcchhhhccCCEEEecCC
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      ..      +.+-++++|+||.+..
T Consensus        65 t~------d~~a~~~aDvVIi~ag   82 (321)
T 3p7m_A           65 TN------DYKDLENSDVVIVTAG   82 (321)
T ss_dssp             ES------CGGGGTTCSEEEECCS
T ss_pred             cC------CHHHHCCCCEEEEcCC
Confidence            21      2456789999988853

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.29  E-value=0.012  Score=52.30  Aligned_cols=34  Identities=29%  Similarity=0.474  Sum_probs=31.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++ +|+|+|+|+.|..++..|...|+++|+++|.+
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~  141 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT  141 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            46 99999999999999999999999999999854

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.29  E-value=0.047  Score=47.03  Aligned_cols=78  Identities=21%  Similarity=0.248  Sum_probs=48.6

Q ss_pred             HHHHHHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcE
Q 020259           33 LRDDLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVN  111 (328)
Q Consensus        33 ~q~~Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~  111 (328)
                      -+.+| ++.+|+|.|+ |++|.++++.|+..|. ++++++.+.                   .+.+.    +...  .+ 
T Consensus        15 ~~~~l-~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~-------------------~~~~~----~~~~--~~-   66 (236)
T 3e8x_A           15 ENLYF-QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNE-------------------EQGPE----LRER--GA-   66 (236)
T ss_dssp             -------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSG-------------------GGHHH----HHHT--TC-
T ss_pred             cccCc-CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECCh-------------------HHHHH----HHhC--CC-
Confidence            44668 6999999996 9999999999999997 788877432                   12221    2221  23 


Q ss_pred             EEEEecccCCcchhhhccCCEEEecCC
Q 020259          112 IVPHFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       112 v~~~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      .+....++.+.-.+.+.+.|+||.+..
T Consensus        67 ~~~~~~Dl~~~~~~~~~~~D~vi~~ag   93 (236)
T 3e8x_A           67 SDIVVANLEEDFSHAFASIDAVVFAAG   93 (236)
T ss_dssp             SEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred             ceEEEcccHHHHHHHHcCCCEEEECCC
Confidence            033444444334567789999998754

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.24  E-value=0.027  Score=51.50  Aligned_cols=72  Identities=18%  Similarity=0.214  Sum_probs=50.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh----hCCCcEEEEEec
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME----RVSGVNIVPHFC  117 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~----lnp~v~v~~~~~  117 (328)
                      ||.|||+|.+|..++..|+..|+++|.|+|-+                   ..|++..+..+..    .+..+++.... 
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~-------------------~~~~~g~~~dl~~~~~~~~~~~~i~~t~-   60 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIART-------------------PGKPQGEALDLAHAAAELGVDIRISGSN-   60 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-------------------TTHHHHHHHHHHHHHHHHTCCCCEEEES-
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCC-------------------hhhHHHHHHHHHHhhhhcCCCeEEEECC-
Confidence            68999999999999999999999669999843                   1234443444443    34455665531 


Q ss_pred             ccCCcchhhhccCCEEEecCC
Q 020259          118 RIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d  138 (328)
                           +.+-++++|+||.+..
T Consensus        61 -----d~~a~~~aD~Vi~~ag   76 (308)
T 2d4a_B           61 -----SYEDMRGSDIVLVTAG   76 (308)
T ss_dssp             -----CGGGGTTCSEEEECCS
T ss_pred             -----CHHHhCCCCEEEEeCC
Confidence                 1245789999998843

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.21  E-value=0.0094  Score=53.72  Aligned_cols=78  Identities=19%  Similarity=0.190  Sum_probs=53.5

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      + +..+++|+| +||+|..+++.|+..|.. ++++|.+.                   .|++.+++.+... +.+.+.. 
T Consensus       117 l-~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R~~-------------------~~~~~l~~~~~~~-~~~~~~~-  173 (287)
T 1lu9_A          117 V-KGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRKL-------------------DKAQAAADSVNKR-FKVNVTA-  173 (287)
T ss_dssp             C-TTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESSH-------------------HHHHHHHHHHHHH-HTCCCEE-
T ss_pred             C-CCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEECCH-------------------HHHHHHHHHHHhc-CCcEEEE-
Confidence            5 478899999 999999999999999984 98887321                   4666677666543 2232222 


Q ss_pred             ecccCCc--chhhhccCCEEEecCC
Q 020259          116 FCRIEDK--DISFYNDFNIIVLGLD  138 (328)
Q Consensus       116 ~~~~~~~--~~~~~~~~dvVi~~~d  138 (328)
                       .++.+.  -.+.++.+|+||.++.
T Consensus       174 -~D~~~~~~~~~~~~~~DvlVn~ag  197 (287)
T 1lu9_A          174 -AETADDASRAEAVKGAHFVFTAGA  197 (287)
T ss_dssp             -EECCSHHHHHHHTTTCSEEEECCC
T ss_pred             -ecCCCHHHHHHHHHhCCEEEECCC
Confidence             223221  2455678999999874

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=96.21  E-value=0.011  Score=51.84  Aligned_cols=77  Identities=16%  Similarity=0.306  Sum_probs=50.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv---g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      ..+|.|||+|.+|..++++|...|.   .+++++|.+.                   .|++.+++..     .+.     
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~-------------------~~~~~~~~~~-----g~~-----   52 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT-------------------ANLKNASEKY-----GLT-----   52 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH-------------------HHHHHHHHHH-----CCE-----
T ss_pred             CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH-------------------HHHHHHHHHh-----CCE-----
Confidence            3589999999999999999999996   3788877432                   2444443322     121     


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYIN  147 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~  147 (328)
                        ......+.++++|+||.|+........+.
T Consensus        53 --~~~~~~e~~~~aDvVilav~~~~~~~v~~   81 (247)
T 3gt0_A           53 --TTTDNNEVAKNADILILSIKPDLYASIIN   81 (247)
T ss_dssp             --ECSCHHHHHHHCSEEEECSCTTTHHHHC-
T ss_pred             --EeCChHHHHHhCCEEEEEeCHHHHHHHHH
Confidence              12234566778999999986544444443

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=96.20  E-value=0.0047  Score=56.27  Aligned_cols=116  Identities=18%  Similarity=0.108  Sum_probs=61.8

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ++.||.+||+|-.|..+|+||+.+|. +++++|.+.-....+..        .|-..++...+.++  ..++-+...+..
T Consensus         4 Ms~kIgfIGLG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~--------~G~~~~~s~~e~~~--~~dvvi~~l~~~   72 (297)
T 4gbj_A            4 MSEKIAFLGLGNLGTPIAEILLEAGY-ELVVWNRTASKAEPLTK--------LGATVVENAIDAIT--PGGIVFSVLADD   72 (297)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHHTTC-EEEEC-------CTTTT--------TTCEECSSGGGGCC--TTCEEEECCSSH
T ss_pred             CCCcEEEEecHHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH--------cCCeEeCCHHHHHh--cCCceeeeccch
Confidence            46789999999999999999999998 78998854432222211        11111111111111  122323222211


Q ss_pred             c--C----CcchhhhccCCEEEec-CCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecce
Q 020259          119 I--E----DKDISFYNDFNIIVLG-LDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF  178 (328)
Q Consensus       119 ~--~----~~~~~~~~~~dvVi~~-~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~  178 (328)
                      -  .    ..-...++.-+++|++ +-++...+.+.+.+             .+.++.++++.+.|.
T Consensus        73 ~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~-------------~~~g~~~ldapVsGg  126 (297)
T 4gbj_A           73 AAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVH-------------EWYGAHYVGAPIFAR  126 (297)
T ss_dssp             HHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHH-------------HHTTCEEEECCEECC
T ss_pred             hhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHH-------------HhcCCceecCCcCCC
Confidence            0  0    0012233455666665 44566666666666             567888888877763

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.20  E-value=0.017  Score=52.91  Aligned_cols=34  Identities=24%  Similarity=0.485  Sum_probs=30.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +..+|.|||+|.+|..++++|+..|. +++++|.+
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   63 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRT   63 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCC
Confidence            35689999999999999999999997 78888754

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.16  E-value=0.025  Score=49.67  Aligned_cols=95  Identities=15%  Similarity=0.188  Sum_probs=55.5

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC-ccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE-VSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIV  113 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~-~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~  113 (328)
                      ..+ ...+|.|||+|.+|..++++|+..|. +++++|.+.-. ....      ....++..+.    +.+.+..+.... 
T Consensus        15 ~~~-~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~~~~~~~~------~~~~~~~~~~----~~~~~~~~~~~~-   81 (245)
T 3dtt_A           15 LYF-QGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDPKATLARA------EPDAMGAPPF----SQWLPEHPHVHL-   81 (245)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHTCC-------------CCH----HHHGGGSTTCEE-
T ss_pred             ccc-CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCChhhhhhhh------hhhhhcchhh----hHHHhhcCceec-
Confidence            457 68999999999999999999999997 79999865421 0000      0011121111    122222222211 


Q ss_pred             EEecccCCcchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259          114 PHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAV  149 (328)
Q Consensus       114 ~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~  149 (328)
                             ....+.++++|+||.|+.+......+.++
T Consensus        82 -------~~~~e~~~~aDvVilavp~~~~~~~~~~i  110 (245)
T 3dtt_A           82 -------AAFADVAAGAELVVNATEGASSIAALTAA  110 (245)
T ss_dssp             -------EEHHHHHHHCSEEEECSCGGGHHHHHHHH
T ss_pred             -------cCHHHHHhcCCEEEEccCcHHHHHHHHHh
Confidence                   12456678899999998877666655544

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.16  E-value=0.0099  Score=53.47  Aligned_cols=33  Identities=18%  Similarity=0.397  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|.+|..++++|+..|. +++++|.+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~   34 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSP   34 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            579999999999999999999996 788888543

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.13  E-value=0.008  Score=58.18  Aligned_cols=87  Identities=16%  Similarity=0.228  Sum_probs=58.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      .-||+|+|+|-+|..+|+.|...|. .++++|.|.-                   +    .+++++.. ++.  ....+.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~-~v~vId~d~~-------------------~----~~~~~~~~-~~~--~i~Gd~   55 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENN-DITIVDKDGD-------------------R----LRELQDKY-DLR--VVNGHA   55 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTE-EEEEEESCHH-------------------H----HHHHHHHS-SCE--EEESCT
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHH-------------------H----HHHHHHhc-CcE--EEEEcC
Confidence            3479999999999999999998886 7999996641                   2    23333322 232  333333


Q ss_pred             CCc---chhhhccCCEEEecCCCHHHHHHHHHHHHHh
Q 020259          120 EDK---DISFYNDFNIIVLGLDSIEARSYINAVACSF  153 (328)
Q Consensus       120 ~~~---~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l  153 (328)
                      .+.   ...-++++|++|.++++.+.-...-.+++.+
T Consensus        56 ~~~~~L~~Agi~~ad~~ia~t~~De~Nl~~~~~Ak~~   92 (461)
T 4g65_A           56 SHPDVLHEAGAQDADMLVAVTNTDETNMAACQVAFTL   92 (461)
T ss_dssp             TCHHHHHHHTTTTCSEEEECCSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHhcCCCcCCEEEEEcCChHHHHHHHHHHHHh
Confidence            221   2334578999999999887766555555443

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.13  E-value=0.019  Score=52.96  Aligned_cols=75  Identities=20%  Similarity=0.247  Sum_probs=53.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCc--EEEEEe
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV--NIVPHF  116 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v--~v~~~~  116 (328)
                      ..+|.|||+|.+|+.++..|+..|. ++++++|-+                   ..|++..+..|+...|..  .+....
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~-------------------~~k~~g~a~DL~~~~~~~~~~v~i~~   65 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN-------------------KEKAMGDVMDLNHGKAFAPQPVKTSY   65 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGSSSCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc-------------------hHHHHHHHHHHHhccccccCCeEEEe
Confidence            4689999999999999999999998 589999832                   356777666666654432  122221


Q ss_pred             cccCCcchhhhccCCEEEecCC
Q 020259          117 CRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                           .+.+-++++|+||.+..
T Consensus        66 -----~~~~a~~~aDvVvi~ag   82 (326)
T 3pqe_A           66 -----GTYEDCKDADIVCICAG   82 (326)
T ss_dssp             -----ECGGGGTTCSEEEECCS
T ss_pred             -----CcHHHhCCCCEEEEecc
Confidence                 12456789999988754

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.058  Score=48.46  Aligned_cols=87  Identities=15%  Similarity=0.189  Sum_probs=65.0

Q ss_pred             HHHHHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCC--eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC
Q 020259           31 TELRDDLQEYARILVVG-AGGLGCELLKDLALSGFK--NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV  107 (328)
Q Consensus        31 ~~~q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg--~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln  107 (328)
                      .....+| ++++++|.| .||+|.++++.|+..|.+  ++.++|.+                   ..+.+.+++.+.+.+
T Consensus        25 ~~~~~~l-~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~-------------------~~~~~~~~~~l~~~~   84 (287)
T 3rku_A           25 RKAAERL-AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARR-------------------LEKLEELKKTIDQEF   84 (287)
T ss_dssp             HHHHHHH-TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESC-------------------HHHHHHHHHHHHHHC
T ss_pred             ccchhhc-CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECC-------------------HHHHHHHHHHHHhhC
Confidence            3445678 688899998 689999999999999985  77777632                   246777788888888


Q ss_pred             CCcEEEEEecccCCcc--h-------hhhccCCEEEecC
Q 020259          108 SGVNIVPHFCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       108 p~v~v~~~~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      |..++.....++.+..  .       +.+.+.|++|.+.
T Consensus        85 ~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA  123 (287)
T 3rku_A           85 PNAKVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNA  123 (287)
T ss_dssp             TTCEEEEEECCTTCGGGHHHHHHTSCGGGCSCCEEEECC
T ss_pred             CCCeEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            8888888888776532  2       2234789998864

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=96.10  E-value=0.017  Score=51.89  Aligned_cols=81  Identities=14%  Similarity=0.283  Sum_probs=54.2

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCC--CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGF--KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gv--g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      +..+|.|||+|.+|..+++.|...|.  .+++++|.+.                   .|++.+++.    . .+.+    
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~-------------------~~~~~l~~~----~-gi~~----   53 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL-------------------DKLDFFKEK----C-GVHT----   53 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS-------------------HHHHHHHHT----T-CCEE----
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH-------------------HHHHHHHHH----c-CCEE----
Confidence            35789999999999999999999996  2788887332                   233333322    1 2221    


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                         .....+.++++|+||.|+........+.++.
T Consensus        54 ---~~~~~~~~~~aDvVilav~p~~~~~vl~~l~   84 (280)
T 3tri_A           54 ---TQDNRQGALNADVVVLAVKPHQIKMVCEELK   84 (280)
T ss_dssp             ---ESCHHHHHSSCSEEEECSCGGGHHHHHHHHH
T ss_pred             ---eCChHHHHhcCCeEEEEeCHHHHHHHHHHHH
Confidence               1234566789999999987655555555443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.09  E-value=0.019  Score=51.39  Aligned_cols=72  Identities=18%  Similarity=0.271  Sum_probs=51.3

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +.++|+|+|+||+|..++..|+..| .+++++|.+.                   .|++.+++.+.... .  +....  
T Consensus       118 ~~~~vlvlGaGg~g~a~a~~L~~~G-~~v~v~~R~~-------------------~~a~~l~~~~~~~~-~--~~~~~--  172 (272)
T 1p77_A          118 PNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTF-------------------SKTKELAERFQPYG-N--IQAVS--  172 (272)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSH-------------------HHHHHHHHHHGGGS-C--EEEEE--
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCH-------------------HHHHHHHHHccccC-C--eEEee--
Confidence            4678999999999999999999999 7999987332                   47777777765421 2  22221  


Q ss_pred             cCCcchhhh-ccCCEEEecCCC
Q 020259          119 IEDKDISFY-NDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~-~~~dvVi~~~d~  139 (328)
                      +.    +.. .++|+||+|+..
T Consensus       173 ~~----~~~~~~~DivIn~t~~  190 (272)
T 1p77_A          173 MD----SIPLQTYDLVINATSA  190 (272)
T ss_dssp             GG----GCCCSCCSEEEECCCC
T ss_pred             HH----HhccCCCCEEEECCCC
Confidence            11    111 389999999775

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.07  E-value=0.034  Score=50.94  Aligned_cols=72  Identities=26%  Similarity=0.309  Sum_probs=50.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC----CcEEEE
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS----GVNIVP  114 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp----~v~v~~  114 (328)
                      ..+|.|||+|.+|+.++..|+..|. ++|.++|-+.                   .|+++.+..+....+    .+++..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~-------------------~~~~~~~~dl~~~~~~~~~~~~i~~   66 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE-------------------SKAIGDAMDFNHGKVFAPKPVDIWH   66 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH-------------------HHHHHHHHHHHHHTTSSSSCCEEEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc-------------------chHHHHHhhHHHHhhhcCCCeEEEc
Confidence            3689999999999999999999885 6799998431                   244444444444444    444442


Q ss_pred             EecccCCcchhhhccCCEEEecC
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~  137 (328)
                             ...+-++++|+||.+.
T Consensus        67 -------~~~~al~~aDvViia~   82 (316)
T 1ldn_A           67 -------GDYDDCRDADLVVICA   82 (316)
T ss_dssp             -------CCGGGTTTCSEEEECC
T ss_pred             -------CcHHHhCCCCEEEEcC
Confidence                   1234578999999884

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.04  E-value=0.016  Score=52.00  Aligned_cols=33  Identities=21%  Similarity=0.394  Sum_probs=29.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|.+|..++++|+..|. +++++|.+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~   34 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNP   34 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTC-CEEEECSSG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            479999999999999999999996 788887543

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.03  E-value=0.031  Score=50.86  Aligned_cols=124  Identities=21%  Similarity=0.239  Sum_probs=69.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE  120 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~  120 (328)
                      ++|.+||+|..|..+|+||+.+|. .++++|.+.-....+..        .|-..+...++.++  ..++-+...+..-.
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~-~v~v~dr~~~~~~~l~~--------~Ga~~a~s~~e~~~--~~dvv~~~l~~~~~   72 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVA--------AGASAARSARDAVQ--GADVVISMLPASQH   72 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH--------TTCEECSSHHHHHT--TCSEEEECCSCHHH
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHH--------cCCEEcCCHHHHHh--cCCceeecCCchHH
Confidence            479999999999999999999998 79998754321111111        11111111222222  23343333322110


Q ss_pred             --C---c---chhhhccCCEEEec-CCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecce-----eeeEEEEc
Q 020259          121 --D---K---DISFYNDFNIIVLG-LDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGF-----KGHARVII  186 (328)
Q Consensus       121 --~---~---~~~~~~~~dvVi~~-~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G~-----~G~v~~~~  186 (328)
                        +   .   -.+.++.-++||++ +.+++..+.+.+.+             .+.++.|+++.+.|.     .|.+.+..
T Consensus        73 v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~-------------~~~G~~~lDaPVsGg~~~A~~G~L~imv  139 (300)
T 3obb_A           73 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAA-------------RERGLAMLDAPVSGGTAGAAAGTLTFMV  139 (300)
T ss_dssp             HHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHH-------------HTTTCEEEECCEESCHHHHHHTCEEEEE
T ss_pred             HHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHH-------------HHcCCEEEecCCCCCHHHHHhCCEEEEE
Confidence              0   0   01122334577766 55667767777776             677899999887764     35554444


Q ss_pred             CC
Q 020259          187 PG  188 (328)
Q Consensus       187 p~  188 (328)
                      .+
T Consensus       140 GG  141 (300)
T 3obb_A          140 GG  141 (300)
T ss_dssp             ES
T ss_pred             eC
Confidence            44

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.03  E-value=0.03  Score=51.39  Aligned_cols=74  Identities=18%  Similarity=0.315  Sum_probs=50.9

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC----CCcEEE
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV----SGVNIV  113 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln----p~v~v~  113 (328)
                      +..+|.|||+|.+|..++..|+..|. .+|.++|-+.                   .|++..+..+....    ..+++.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~v~   65 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDT-------------------EKVRGDVMDLKHATPYSPTTVRVK   65 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCH-------------------HHHHHHHHHHHHHGGGSSSCCEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh-------------------hHhhhhhhhHHhhhhhcCCCeEEE
Confidence            46799999999999999999999886 6799998431                   24443333333322    344554


Q ss_pred             EEecccCCcchhhhccCCEEEecCC
Q 020259          114 PHFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       114 ~~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      .       ...+-++++|+||.+..
T Consensus        66 ~-------~~~~a~~~aDvVvi~ag   83 (317)
T 3d0o_A           66 A-------GEYSDCHDADLVVICAG   83 (317)
T ss_dssp             E-------CCGGGGTTCSEEEECCC
T ss_pred             e-------CCHHHhCCCCEEEECCC
Confidence            3       13455899999988854

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.01  E-value=0.023  Score=50.77  Aligned_cols=73  Identities=23%  Similarity=0.293  Sum_probs=49.8

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +.++|+|+|+||+|..+++.|+..| .+++++|.+.                   .|++.+++.+.... .  +...  .
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G-~~V~v~~R~~-------------------~~~~~la~~~~~~~-~--~~~~--~  172 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLD-CAVTITNRTV-------------------SRAEELAKLFAHTG-S--IQAL--S  172 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSH-------------------HHHHHHHHHTGGGS-S--EEEC--C
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEECCH-------------------HHHHHHHHHhhccC-C--eeEe--c
Confidence            4678999999999999999999999 6899986332                   46666666654321 1  2221  1


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      +.+. .+  .++|+||+++..
T Consensus       173 ~~~~-~~--~~~DivVn~t~~  190 (271)
T 1nyt_A          173 MDEL-EG--HEFDLIINATSS  190 (271)
T ss_dssp             SGGG-TT--CCCSEEEECCSC
T ss_pred             HHHh-cc--CCCCEEEECCCC
Confidence            1110 11  589999999875

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=95.98  E-value=0.026  Score=51.13  Aligned_cols=32  Identities=31%  Similarity=0.630  Sum_probs=29.0

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|.||| +|.+|..+++.|...|. +++++|.+
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~   54 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRE   54 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            5799999 99999999999999997 78898854

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.96  E-value=0.018  Score=51.16  Aligned_cols=66  Identities=20%  Similarity=0.148  Sum_probs=47.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +. +|+|||+|++|..+++.|...|+ +++++|.+.                   .|++.+++.+..     .       
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~~-------------------~~~~~l~~~~~~-----~-------  162 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRTP-------------------QRALALAEEFGL-----R-------  162 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH-------------------HHHHHHHHHHTC-----E-------
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHhcc-----c-------
Confidence            46 99999999999999999999998 899987332                   345555444321     1       


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      .. ...+. +++|+||.|+..
T Consensus       163 ~~-~~~~~-~~~Divi~~tp~  181 (263)
T 2d5c_A          163 AV-PLEKA-REARLLVNATRV  181 (263)
T ss_dssp             EC-CGGGG-GGCSEEEECSST
T ss_pred             hh-hHhhc-cCCCEEEEccCC
Confidence            11 12344 789999999775

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.92  E-value=0.031  Score=51.54  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=30.9

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +..+|.|||+|.+|..+|..|+..|...++++|-+
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~   47 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDII   47 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            35689999999999999999999999569999854

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=95.92  E-value=0.041  Score=49.99  Aligned_cols=72  Identities=22%  Similarity=0.200  Sum_probs=51.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh----CCCcEEEEEe
Q 020259           42 RILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER----VSGVNIVPHF  116 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l----np~v~v~~~~  116 (328)
                      ||.|||+|++|+.+|-.|+..|. ++|.|+|-                   .+.|++..+--|+..    +...++... 
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di-------------------~~~~~~G~a~DL~h~~~~~~~~~~i~~~-   61 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI-------------------AEDLAVGEAMDLAHAAAGIDKYPKIVGG-   61 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECS-------------------SHHHHHHHHHHHHHHHGGGTCCCEEEEE-
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCCcchhhhhhhhcccccCCCCCeEecC-
Confidence            69999999999999999999886 78999982                   234566666666663    323344332 


Q ss_pred             cccCCcchhhhccCCEEEecCC
Q 020259          117 CRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                           .+.+-++++|+||.+..
T Consensus        62 -----~d~~~~~~aDvVvitAG   78 (294)
T 2x0j_A           62 -----ADYSLLKGSEIIVVTAG   78 (294)
T ss_dssp             -----SCGGGGTTCSEEEECCC
T ss_pred             -----CCHHHhCCCCEEEEecC
Confidence                 12355789999977654

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=95.91  E-value=0.022  Score=54.10  Aligned_cols=73  Identities=22%  Similarity=0.266  Sum_probs=51.6

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      + ...+|+|+|+|++|..+++.|...|+++++++|.+.                   .|++.+++.+.     ..  ...
T Consensus       165 l-~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~-------------------~ra~~la~~~g-----~~--~~~  217 (404)
T 1gpj_A          165 L-HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY-------------------ERAVELARDLG-----GE--AVR  217 (404)
T ss_dssp             C-TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH-------------------HHHHHHHHHHT-----CE--ECC
T ss_pred             c-cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHcC-----Cc--eec
Confidence            5 588999999999999999999999999999987331                   35544444432     11  111


Q ss_pred             cccCCcchhhhccCCEEEecCCC
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                        . +...+.+.++|+||+|+..
T Consensus       218 --~-~~l~~~l~~aDvVi~at~~  237 (404)
T 1gpj_A          218 --F-DELVDHLARSDVVVSATAA  237 (404)
T ss_dssp             --G-GGHHHHHHTCSEEEECCSS
T ss_pred             --H-HhHHHHhcCCCEEEEccCC
Confidence              1 1224556899999999764

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=95.89  E-value=0.034  Score=51.76  Aligned_cols=75  Identities=15%  Similarity=0.128  Sum_probs=54.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..+|+|||+|+.|...++.|.. .++.+++++|.+                   ..|++.+++.+.+. +.+.+...   
T Consensus       129 ~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~-------------------~~~a~~la~~~~~~-~g~~~~~~---  185 (350)
T 1x7d_A          129 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTD-------------------PLATAKLIANLKEY-SGLTIRRA---  185 (350)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSS-------------------HHHHHHHHHHHTTC-TTCEEEEC---
T ss_pred             CCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCC-------------------HHHHHHHHHHHHhc-cCceEEEe---
Confidence            5789999999999999999864 478899998732                   24777777776542 34444332   


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                        +...+.++++|+||+|+.+
T Consensus       186 --~~~~eav~~aDiVi~aTps  204 (350)
T 1x7d_A          186 --SSVAEAVKGVDIITTVTAD  204 (350)
T ss_dssp             --SSHHHHHTTCSEEEECCCC
T ss_pred             --CCHHHHHhcCCEEEEeccC
Confidence              2345667889999999876

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.85  E-value=0.069  Score=47.37  Aligned_cols=33  Identities=30%  Similarity=0.577  Sum_probs=28.8

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +..+|+|.|+|.+|+.+++.|...|. +++.++.
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r   34 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGH-EVTGLRR   34 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            35689999999999999999999997 6777764

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.84  E-value=0.046  Score=49.06  Aligned_cols=33  Identities=27%  Similarity=0.571  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|.+|+.+|..|+.+|. +++++|.+.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~   37 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINT   37 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            689999999999999999999998 899988543

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.84  E-value=0.045  Score=50.21  Aligned_cols=74  Identities=18%  Similarity=0.320  Sum_probs=53.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC---CCcEEEEE
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV---SGVNIVPH  115 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln---p~v~v~~~  115 (328)
                      ..||.|||+|.+|..++..|+..|. .+|.|+|-                   ...|++..+..|....   +.+++.. 
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di-------------------~~~~~~g~~~dl~~~~~~~~~~~v~~-   64 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDV-------------------VKDRTKGDALDLEDAQAFTAPKKIYS-   64 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS-------------------SHHHHHHHHHHHHGGGGGSCCCEEEE-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC-------------------CchHHHHHHHHHHHHHHhcCCeEEEE-
Confidence            4689999999999999999999885 56888873                   2246666566665543   3444443 


Q ss_pred             ecccCCcchhhhccCCEEEecCCC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                            ...+-++++|+||.+...
T Consensus        65 ------~~~~a~~~aDvVii~ag~   82 (318)
T 1ez4_A           65 ------GEYSDCKDADLVVITAGA   82 (318)
T ss_dssp             ------CCGGGGTTCSEEEECCCC
T ss_pred             ------CCHHHhCCCCEEEECCCC
Confidence                  134558999999888653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=95.82  E-value=0.093  Score=47.93  Aligned_cols=81  Identities=17%  Similarity=0.148  Sum_probs=52.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..+|.|||+|.+|..+++.|...|.. +++++|.+.                   .+.+.    +.+..-...       
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~-------------------~~~~~----a~~~G~~~~-------   82 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP-------------------ESISK----AVDLGIIDE-------   82 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH-------------------HHHHH----HHHTTSCSE-------
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH-------------------HHHHH----HHHCCCcch-------
Confidence            36899999999999999999999974 788887432                   12221    222211001       


Q ss_pred             cCCcchh-hhccCCEEEecCCCHHHHHHHHHHH
Q 020259          119 IEDKDIS-FYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       119 ~~~~~~~-~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      ......+ .++++|+||.|+........+.++.
T Consensus        83 ~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l~  115 (314)
T 3ggo_A           83 GTTSIAKVEDFSPDFVMLSSPVRTFREIAKKLS  115 (314)
T ss_dssp             EESCTTGGGGGCCSEEEECSCGGGHHHHHHHHH
T ss_pred             hcCCHHHHhhccCCEEEEeCCHHHHHHHHHHHh
Confidence            1112345 6789999999987666555555544

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.80  E-value=0.033  Score=50.43  Aligned_cols=33  Identities=18%  Similarity=0.277  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|.|||+|.+|..++++|+..|. +++++|.+
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   39 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLN   39 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            4689999999999999999999997 78888744

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.79  E-value=0.045  Score=49.76  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=29.8

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +..+|.|||+|.+|..++++|+..|. +++++|.+
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~   41 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRS   41 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35689999999999999999999997 68888743

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=95.76  E-value=0.015  Score=52.49  Aligned_cols=74  Identities=23%  Similarity=0.273  Sum_probs=50.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC--C-CcEEEEE
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV--S-GVNIVPH  115 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln--p-~v~v~~~  115 (328)
                      +..+++|+|+||+|..+++.|+..|  +++++|.+.                   .|++.+++.+....  + .+.+...
T Consensus       127 ~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~~-------------------~~~~~l~~~~~~~~~~~~~~~~d~~  185 (287)
T 1nvt_A          127 KDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTV-------------------EKAEALAKEIAEKLNKKFGEEVKFS  185 (287)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSH-------------------HHHHHHHHHHHHHHTCCHHHHEEEE
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCC--CEEEEECCH-------------------HHHHHHHHHHhhhcccccceeEEEe
Confidence            4688999999999999999999999  899986321                   35666666665421  0 0122221


Q ss_pred             ecccCCcchhhhccCCEEEecCCC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      .  +    .+.+.++|+||+++..
T Consensus       186 ~--~----~~~~~~~DilVn~ag~  203 (287)
T 1nvt_A          186 G--L----DVDLDGVDIIINATPI  203 (287)
T ss_dssp             C--T----TCCCTTCCEEEECSCT
T ss_pred             e--H----HHhhCCCCEEEECCCC
Confidence            1  1    3445789999999763

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.75  E-value=0.021  Score=53.45  Aligned_cols=35  Identities=23%  Similarity=0.492  Sum_probs=31.0

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +..+|.|||+|.+|..++++|+..|. .++++|.+.
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~   55 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNV   55 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCH
Confidence            46789999999999999999999996 799998664

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=95.72  E-value=0.021  Score=51.98  Aligned_cols=75  Identities=21%  Similarity=0.378  Sum_probs=50.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC----CCcEEEEE
Q 020259           41 ARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV----SGVNIVPH  115 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln----p~v~v~~~  115 (328)
                      .+|.|||+|.+|+.++..|+..|. .+++++|.+.                   .|++.++..+...+    ..+++.  
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~--   60 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE-------------------AKVKADQIDFQDAMANLEAHGNIV--   60 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH-------------------HHHHHHHHHHHHHGGGSSSCCEEE--
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH-------------------HHHHHHHHHHHhhhhhcCCCeEEE--
Confidence            379999999999999999999996 6799988432                   34555554444322    122332  


Q ss_pred             ecccCCcchhhhccCCEEEecCCCHH
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLDSIE  141 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d~~~  141 (328)
                      ..     +.+.++++|+||.|+....
T Consensus        61 ~~-----d~~~~~~aDvViiav~~~~   81 (309)
T 1hyh_A           61 IN-----DWAALADADVVISTLGNIK   81 (309)
T ss_dssp             ES-----CGGGGTTCSEEEECCSCGG
T ss_pred             eC-----CHHHhCCCCEEEEecCCcc
Confidence            11     1245789999999977533

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=95.72  E-value=0.022  Score=50.13  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF---KNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv---g~itlvD~d   73 (328)
                      ..+|.|||+|.+|+.++++|...|.   ..++++|.+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~   40 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPS   40 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCC
Confidence            4579999999999999999999995   589999854

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.70  E-value=0.049  Score=49.44  Aligned_cols=72  Identities=22%  Similarity=0.187  Sum_probs=49.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC----CCcEEEEEe
Q 020259           42 RILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV----SGVNIVPHF  116 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln----p~v~v~~~~  116 (328)
                      +|.|+|+|.+|..++..|+..|.. +++|+|-+.                   .|++..+-.++..+    ...++....
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~-------------------~~~~g~~~dl~~~~~~~~~~~~i~~t~   62 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE-------------------DLAVGEAMDLAHAAAGIDKYPKIVGGA   62 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH-------------------HHHHHHHHHHHHHHHTTTCCCEEEEES
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh-------------------HHHHHHHHHHHhhhhhcCCCCEEEEeC
Confidence            699999999999999999999974 899998432                   33443333344333    234454421


Q ss_pred             cccCCcchhhhccCCEEEecCC
Q 020259          117 CRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                            +.+-++++|+||.+..
T Consensus        63 ------d~~a~~~aDiVViaag   78 (294)
T 1oju_A           63 ------DYSLLKGSEIIVVTAG   78 (294)
T ss_dssp             ------CGGGGTTCSEEEECCC
T ss_pred             ------CHHHhCCCCEEEECCC
Confidence                  2556789999988754

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.70  E-value=0.052  Score=49.99  Aligned_cols=74  Identities=20%  Similarity=0.369  Sum_probs=52.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC---CCcEEEE
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV---SGVNIVP  114 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln---p~v~v~~  114 (328)
                      +..||.|||+|.+|..++..|+..|. .+|.|+|-                   ...|++..+..|....   +.+++..
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di-------------------~~~~~~g~~~dl~~~~~~~~~~~i~~   68 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDI-------------------FKDKTKGDAIDLSNALPFTSPKKIYS   68 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECS-------------------CHHHHHHHHHHHHTTGGGSCCCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeC-------------------CchHhHHHHHHHHHHHHhcCCeEEEE
Confidence            35689999999999999999998885 46888873                   2245665555555433   3444543


Q ss_pred             EecccCCcchhhhccCCEEEecCC
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                             ...+-++++|+||.+..
T Consensus        69 -------~~~~a~~~aDvVii~ag   85 (326)
T 2zqz_A           69 -------AEYSDAKDADLVVITAG   85 (326)
T ss_dssp             -------CCGGGGGGCSEEEECCC
T ss_pred             -------CCHHHhCCCCEEEEcCC
Confidence                   13455899999988865

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.67  E-value=0.13  Score=45.41  Aligned_cols=68  Identities=18%  Similarity=0.241  Sum_probs=46.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      ..+|+|.|+|.+|+.+++.|...|. +++.++.+.                   .+...    +..  +.  ++....++
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~----~~~--~~--~~~~~~D~   56 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNP-------------------DQMEA----IRA--SG--AEPLLWPG   56 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCG-------------------GGHHH----HHH--TT--EEEEESSS
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcCh-------------------hhhhh----Hhh--CC--CeEEEecc
Confidence            4789999999999999999999997 677775321                   12221    222  23  44455555


Q ss_pred             CCcchhhhccCCEEEecCC
Q 020259          120 EDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d  138 (328)
                      .+..   +.++|+||.+..
T Consensus        57 ~d~~---~~~~d~vi~~a~   72 (286)
T 3ius_A           57 EEPS---LDGVTHLLISTA   72 (286)
T ss_dssp             SCCC---CTTCCEEEECCC
T ss_pred             cccc---cCCCCEEEECCC
Confidence            5433   789999998853

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.66  E-value=0.073  Score=48.53  Aligned_cols=73  Identities=18%  Similarity=0.198  Sum_probs=49.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh----hCCCcEEEEEe
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME----RVSGVNIVPHF  116 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~----lnp~v~v~~~~  116 (328)
                      .+|.|||+|.+|..++..|+..|.-.++++|-+.                   .|++..+..+.+    .....++....
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~~i~~t~   63 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE-------------------GVPQGKALDLYEASPIEGFDVRVTGTN   63 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCCEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc-------------------cHHHHHHHhHHHhHhhcCCCeEEEECC
Confidence            5899999999999999999999974599988432                   133333333333    23344554421


Q ss_pred             cccCCcchhhhccCCEEEecCC
Q 020259          117 CRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                            +.+-++++|+||.+..
T Consensus        64 ------d~~a~~~aD~Vi~a~g   79 (309)
T 1ur5_A           64 ------NYADTANSDVIVVTSG   79 (309)
T ss_dssp             ------CGGGGTTCSEEEECCC
T ss_pred             ------CHHHHCCCCEEEEcCC
Confidence                  1245789999999864

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.65  E-value=0.072  Score=48.97  Aligned_cols=33  Identities=30%  Similarity=0.368  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|+|||+|.+|+.++..|+..|. +++++|.+
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~   36 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   36 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            4689999999999999999999996 68888744

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=95.64  E-value=0.025  Score=51.88  Aligned_cols=72  Identities=24%  Similarity=0.415  Sum_probs=48.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC---CCcEEEEEec
Q 020259           42 RILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV---SGVNIVPHFC  117 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln---p~v~v~~~~~  117 (328)
                      +|.|||+|.+|+.++..|+..|. ++++++|.+.                   .|++..+..+....   +..++..   
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~-------------------~~~~~~~~~l~~~~~~~~~~~i~~---   59 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK-------------------KRAEGDALDLIHGTPFTRRANIYA---   59 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH-------------------HHHHHHHHHHHHHGGGSCCCEEEE---
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh-------------------HHHHHHHHHHHhhhhhcCCcEEEe---
Confidence            69999999999999999999995 4788887432                   23444443333322   2334432   


Q ss_pred             ccCCcchhhhccCCEEEecCCC
Q 020259          118 RIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                        .  +.+.++++|+||.|+..
T Consensus        60 --~--d~~~~~~aDvViiav~~   77 (319)
T 1a5z_A           60 --G--DYADLKGSDVVIVAAGV   77 (319)
T ss_dssp             --C--CGGGGTTCSEEEECCCC
T ss_pred             --C--CHHHhCCCCEEEEccCC
Confidence              1  13456899999998663

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.62  E-value=0.12  Score=47.09  Aligned_cols=85  Identities=16%  Similarity=0.053  Sum_probs=53.2

Q ss_pred             HHHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCC--
Q 020259           33 LRDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG--  109 (328)
Q Consensus        33 ~q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~--  109 (328)
                      .+..+ +..+|+|.| .|.+|+.+++.|...|. +++.++...-.                   .....+.+....+.  
T Consensus        19 ~~~~~-~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~~   77 (351)
T 3ruf_A           19 QQLIF-SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTG-------------------HQYNLDEVKTLVSTEQ   77 (351)
T ss_dssp             HHHHH-SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC-------------------CHHHHHHHHHTSCHHH
T ss_pred             hhCCC-CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCC-------------------chhhhhhhhhcccccc
Confidence            34456 688999999 58999999999999996 77777642210                   01112222222110  


Q ss_pred             -cEEEEEecccCCcc--hhhhccCCEEEecCC
Q 020259          110 -VNIVPHFCRIEDKD--ISFYNDFNIIVLGLD  138 (328)
Q Consensus       110 -v~v~~~~~~~~~~~--~~~~~~~dvVi~~~d  138 (328)
                       -.++....++.+..  ...++++|+||.+..
T Consensus        78 ~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~  109 (351)
T 3ruf_A           78 WSRFCFIEGDIRDLTTCEQVMKGVDHVLHQAA  109 (351)
T ss_dssp             HTTEEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CCceEEEEccCCCHHHHHHHhcCCCEEEECCc
Confidence             23455556665432  456779999998864

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.61  E-value=0.048  Score=49.84  Aligned_cols=34  Identities=18%  Similarity=0.407  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|.|||+|.+|+.++..|+..|...++++|.+
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~   37 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIA   37 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            4689999999999999999999998679999854

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.61  E-value=0.025  Score=51.48  Aligned_cols=72  Identities=24%  Similarity=0.344  Sum_probs=48.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC---CCcEEEEEec
Q 020259           42 RILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV---SGVNIVPHFC  117 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln---p~v~v~~~~~  117 (328)
                      ||.|||+|.+|+.++..|+..|. ++++++|-+.                   .|++..+..+...+   +.+++..  .
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~-------------------~~~~~~~~~l~~~~~~~~~~~i~~--~   60 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE-------------------DRAQAEAEDIAHAAPVSHGTRVWH--G   60 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH-------------------HHHHHHHHHHTTSCCTTSCCEEEE--E
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH-------------------HHHHHHHHhhhhhhhhcCCeEEEE--C
Confidence            79999999999999999999985 5799998542                   23333333444333   2344442  1


Q ss_pred             ccCCcchhhhccCCEEEecCCC
Q 020259          118 RIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                           +.+-++++|+||.+...
T Consensus        61 -----~~~a~~~aDvVIi~~~~   77 (304)
T 2v6b_A           61 -----GHSELADAQVVILTAGA   77 (304)
T ss_dssp             -----CGGGGTTCSEEEECC--
T ss_pred             -----CHHHhCCCCEEEEcCCC
Confidence                 23457899999999743

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=95.61  E-value=0.026  Score=51.61  Aligned_cols=71  Identities=14%  Similarity=0.117  Sum_probs=49.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLALS-GFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~-Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..+|.|||+|..|..++++|... |+.+++++|.+.                   .|++.+++.+..     ++..    
T Consensus       135 ~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~-------------------~~~~~l~~~~~~-----~~~~----  186 (312)
T 2i99_A          135 SEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTK-------------------ENAEKFADTVQG-----EVRV----  186 (312)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSH-------------------HHHHHHHHHSSS-----CCEE----
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCH-------------------HHHHHHHHHhhC-----CeEE----
Confidence            56899999999999999999988 888999987322                   344444443221     1111    


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                       .....+.++++|+|+.|+..
T Consensus       187 -~~~~~e~v~~aDiVi~atp~  206 (312)
T 2i99_A          187 -CSSVQEAVAGADVIITVTLA  206 (312)
T ss_dssp             -CSSHHHHHTTCSEEEECCCC
T ss_pred             -eCCHHHHHhcCCEEEEEeCC
Confidence             12345667889999999764

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=95.61  E-value=0.027  Score=54.41  Aligned_cols=96  Identities=15%  Similarity=0.182  Sum_probs=62.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHh-CC--CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           40 YARILVVGAGGLGCELLKDLALS-GF--KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~-Gv--g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      +.+|+|||+|++|+.++..|++. ++  ..|+++|.+...                +..    .+.+     .+++.  .
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~----------------~~~----~~~~-----g~~~~--~   65 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTK----------------VDV----AQQY-----GVSFK--L   65 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCS----------------CCH----HHHH-----TCEEE--E
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhh----------------hhH----Hhhc-----CCcee--E
Confidence            68899999999999999999986 45  589999855421                111    1111     23332  2


Q ss_pred             cccCCc-----chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeec
Q 020259          117 CRIEDK-----DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE  176 (328)
Q Consensus       117 ~~~~~~-----~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~  176 (328)
                      ..++..     -..++++.|+||++...... ..+-+.|             .+.++-+++...+
T Consensus        66 ~~Vdadnv~~~l~aLl~~~DvVIN~s~~~~~-l~Im~ac-------------leaGv~YlDTa~E  116 (480)
T 2ph5_A           66 QQITPQNYLEVIGSTLEENDFLIDVSIGISS-LALIILC-------------NQKGALYINAATE  116 (480)
T ss_dssp             CCCCTTTHHHHTGGGCCTTCEEEECCSSSCH-HHHHHHH-------------HHHTCEEEESSCC
T ss_pred             EeccchhHHHHHHHHhcCCCEEEECCccccC-HHHHHHH-------------HHcCCCEEECCCC
Confidence            333332     23456667999998765444 3455677             5778888887654

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=95.60  E-value=0.051  Score=49.85  Aligned_cols=76  Identities=20%  Similarity=0.257  Sum_probs=51.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC----CCcEEEEE
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV----SGVNIVPH  115 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln----p~v~v~~~  115 (328)
                      ..+|.|+|+|.+|+.++..|+..|.++++++|-+.-                 ..|++..+..+....    ...++...
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~-----------------~~~~~g~a~dl~~~~~~~~~~~~i~~t   70 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQL-----------------ENPTKGKALDMLEASPVQGFDANIIGT   70 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGG-----------------HHHHHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccch-----------------HHHHHHhhhhHHHhhhhccCCCEEEEc
Confidence            568999999999999999999999988999985420                 123333333333321    23344432


Q ss_pred             ecccCCcchhhhccCCEEEecCC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      .      +.+-++++|+||.+..
T Consensus        71 ~------d~~a~~~aDvVIiaag   87 (315)
T 3tl2_A           71 S------DYADTADSDVVVITAG   87 (315)
T ss_dssp             S------CGGGGTTCSEEEECCS
T ss_pred             C------CHHHhCCCCEEEEeCC
Confidence            1      2456789999988853

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=95.58  E-value=0.059  Score=52.34  Aligned_cols=37  Identities=19%  Similarity=0.391  Sum_probs=30.2

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+ ++.+|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus        11 ~~~-~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~~r~   47 (480)
T 2zyd_A           11 HHM-SKQQIGVVGMAVMGRNLALNIESRGY-TVSIFNRS   47 (480)
T ss_dssp             -----CBSEEEECCSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             ccc-CCCeEEEEccHHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            346 68899999999999999999999998 68888754

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.55  E-value=0.076  Score=48.75  Aligned_cols=73  Identities=12%  Similarity=0.180  Sum_probs=49.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh----hCCCcEEEEE
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME----RVSGVNIVPH  115 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~----lnp~v~v~~~  115 (328)
                      ..+|.|||+|.+|..++..|+..|...++|+|-+.                   .|++..+..+..    .....++...
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~-------------------~~l~~~~~~l~~~~~~~~~~~~i~~t   64 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK-------------------NMPHGKALDTSHTNVMAYSNCKVSGS   64 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS-------------------SHHHHHHHHHHTHHHHHTCCCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH-------------------HHHHHHHHHHHhhhhhcCCCcEEEEC
Confidence            35899999999999999999999985599998431                   233333333333    2333444432


Q ss_pred             ecccCCcchhhhccCCEEEecC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~  137 (328)
                      .      +.+-++++|+||.+.
T Consensus        65 ~------d~~al~~aD~Vi~a~   80 (322)
T 1t2d_A           65 N------TYDDLAGADVVIVTA   80 (322)
T ss_dssp             C------CGGGGTTCSEEEECC
T ss_pred             C------CHHHhCCCCEEEEeC
Confidence            1      124578999999886

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.53  E-value=0.16  Score=45.15  Aligned_cols=80  Identities=18%  Similarity=0.214  Sum_probs=51.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      .+|.|||+|.+|..+++.|...|.. +++++|.+.                   .+.+.    +.+..  +....     
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~-------------------~~~~~----~~~~g--~~~~~-----   51 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP-------------------ESISK----AVDLG--IIDEG-----   51 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH-------------------HHHHH----HHHTT--SCSEE-----
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH-------------------HHHHH----HHHCC--Ccccc-----
Confidence            3799999999999999999999963 688877432                   12222    22221  11001     


Q ss_pred             CCcchhhhc-cCCEEEecCCCHHHHHHHHHHH
Q 020259          120 EDKDISFYN-DFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       120 ~~~~~~~~~-~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .....+.++ ++|+||.|+........+.++.
T Consensus        52 ~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~   83 (281)
T 2g5c_A           52 TTSIAKVEDFSPDFVMLSSPVRTFREIAKKLS   83 (281)
T ss_dssp             ESCGGGGGGTCCSEEEECSCHHHHHHHHHHHH
T ss_pred             cCCHHHHhcCCCCEEEEcCCHHHHHHHHHHHH
Confidence            112335667 8999999988766665555543

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=95.53  E-value=0.026  Score=51.92  Aligned_cols=33  Identities=24%  Similarity=0.287  Sum_probs=29.3

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +..+|.|||+|.+|+.++.+|+.+|. .++++|.
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r   45 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGE-EVILWAR   45 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeC
Confidence            47899999999999999999999996 7888874

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.52  E-value=0.057  Score=49.48  Aligned_cols=73  Identities=16%  Similarity=0.253  Sum_probs=50.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh----CCCcEEEEEe
Q 020259           42 RILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER----VSGVNIVPHF  116 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l----np~v~v~~~~  116 (328)
                      +|.|+|+|.+|+.++..|+..|+ ++++++|-+.                   .|++..+..|+..    ...+++... 
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~-------------------~k~~g~a~DL~~~~~~~~~~~~v~~~-   61 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD-------------------GMPQGKALDMRESSPIHGFDTRVTGT-   61 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST-------------------THHHHHHHHHHHHHHHHTCCCEEEEE-
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch-------------------HHHHHHHHHHhccccccCCCcEEEEC-
Confidence            69999999999999999999997 5899988332                   2444444444442    224455432 


Q ss_pred             cccCCcchhhhccCCEEEecCCC
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                           .+.+-++++|+||.+...
T Consensus        62 -----~~~~a~~~aDvVii~ag~   79 (314)
T 3nep_X           62 -----NDYGPTEDSDVCIITAGL   79 (314)
T ss_dssp             -----SSSGGGTTCSEEEECCCC
T ss_pred             -----CCHHHhCCCCEEEECCCC
Confidence                 234567899999887553

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=95.51  E-value=0.016  Score=52.56  Aligned_cols=37  Identities=16%  Similarity=0.166  Sum_probs=32.9

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..| ..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       118 ~~l-~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~  154 (290)
T 3gvx_A          118 TLL-YGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRS  154 (290)
T ss_dssp             CCC-TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             eee-ecchheeeccCchhHHHHHHHHhhCc-EEEEEecc
Confidence            457 68999999999999999999999998 78888854

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=95.51  E-value=0.083  Score=47.24  Aligned_cols=75  Identities=15%  Similarity=0.333  Sum_probs=50.7

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           41 ARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        41 ~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      .+|.|||+ |.+|+.+++.|...|. +++++|.+.                   .+++.+.    +.  .+.+       
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~-------------------~~~~~~~----~~--g~~~-------   58 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAP-------------------EGRDRLQ----GM--GIPL-------   58 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSH-------------------HHHHHHH----HT--TCCC-------
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCH-------------------HHHHHHH----hc--CCCc-------
Confidence            47999999 9999999999999997 788877322                   2232222    21  2211       


Q ss_pred             CCcchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259          120 EDKDISFYNDFNIIVLGLDSIEARSYINAV  149 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~  149 (328)
                      . ...+.++++|+||.|+........+.++
T Consensus        59 ~-~~~~~~~~aDvVi~av~~~~~~~v~~~l   87 (286)
T 3c24_A           59 T-DGDGWIDEADVVVLALPDNIIEKVAEDI   87 (286)
T ss_dssp             C-CSSGGGGTCSEEEECSCHHHHHHHHHHH
T ss_pred             C-CHHHHhcCCCEEEEcCCchHHHHHHHHH
Confidence            1 2345678899999998876655555444

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.49  E-value=0.077  Score=47.13  Aligned_cols=76  Identities=22%  Similarity=0.192  Sum_probs=48.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      +|.|||+|.+|..+++.|...|. +++++|.+.                   .+++.    +.+..  +....     ..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~-------------------~~~~~----~~~~g--~~~~~-----~~   50 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQ-------------------STCEK----AVERQ--LVDEA-----GQ   50 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH-------------------HHHHH----HHHTT--SCSEE-----ES
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHH----HHhCC--CCccc-----cC
Confidence            69999999999999999999997 788887432                   12222    22221  11011     11


Q ss_pred             cchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259          122 KDISFYNDFNIIVLGLDSIEARSYINAV  149 (328)
Q Consensus       122 ~~~~~~~~~dvVi~~~d~~~~~~~l~~~  149 (328)
                      ...+. .++|+||.|+.+......+.++
T Consensus        51 ~~~~~-~~~D~vi~av~~~~~~~~~~~l   77 (279)
T 2f1k_A           51 DLSLL-QTAKIIFLCTPIQLILPTLEKL   77 (279)
T ss_dssp             CGGGG-TTCSEEEECSCHHHHHHHHHHH
T ss_pred             CHHHh-CCCCEEEEECCHHHHHHHHHHH
Confidence            22344 7899999998876555555544

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.48  E-value=0.079  Score=47.16  Aligned_cols=29  Identities=24%  Similarity=0.425  Sum_probs=26.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +|.|||+|.+|..+++.|.. |. +++++|.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~   31 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RF-PTLVWNR   31 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TS-CEEEECS
T ss_pred             eEEEEcccHHHHHHHHHHhC-CC-eEEEEeC
Confidence            69999999999999999999 97 6888763

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.45  E-value=0.028  Score=50.88  Aligned_cols=34  Identities=15%  Similarity=0.229  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|.|||+|.+|..++++|+..|. +++++|.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   48 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRI   48 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            4689999999999999999999997 788887543

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.43  E-value=0.051  Score=48.82  Aligned_cols=33  Identities=21%  Similarity=0.364  Sum_probs=28.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|.|||+|.+|..++++|...|. +++++|.+
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   36 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLM   36 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4579999999999999999999997 78888743

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.43  E-value=0.04  Score=50.13  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      -.+|.|||+|.+|..++++|+..|. +++++|.+.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   54 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTL   54 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            4689999999999999999999997 899988654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.43  E-value=0.074  Score=50.60  Aligned_cols=84  Identities=15%  Similarity=0.204  Sum_probs=56.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      +.+|+|+|+|.+|..+++.|...|+ .++++|.|.-                   ++    +.+++.  ++.  ++..+.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~-------------------~v----~~~~~~--g~~--vi~GDa   55 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPD-------------------HI----ETLRKF--GMK--VFYGDA   55 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHH-------------------HH----HHHHHT--TCC--CEESCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHH-------------------HH----HHHHhC--CCe--EEEcCC
Confidence            5689999999999999999999998 7999996641                   22    222222  222  222332


Q ss_pred             CCcc---hhhhccCCEEEecCCCHHHHHHHHHHHH
Q 020259          120 EDKD---ISFYNDFNIIVLGLDSIEARSYINAVAC  151 (328)
Q Consensus       120 ~~~~---~~~~~~~dvVi~~~d~~~~~~~l~~~~~  151 (328)
                      .+..   ..-++++|+||.++++.+....+-..++
T Consensus        56 t~~~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar   90 (413)
T 3l9w_A           56 TRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVK   90 (413)
T ss_dssp             TCHHHHHHTTTTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCHHHHHhcCCCccCEEEECCCChHHHHHHHHHHH
Confidence            2211   1225789999999998877766666664

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.40  E-value=0.03  Score=50.94  Aligned_cols=34  Identities=26%  Similarity=0.486  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF-KNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d   73 (328)
                      ..+|+|||+|++|+.++..|+..|. ++++++|.+
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4689999999999999999999995 479998854

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=95.37  E-value=0.096  Score=46.14  Aligned_cols=80  Identities=18%  Similarity=0.340  Sum_probs=54.6

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++++++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..+..++...
T Consensus        11 l-~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~   69 (267)
T 1iy8_A           11 F-TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSS-------------------EGLEASKAAVLETAPDAEVLTT   69 (267)
T ss_dssp             C-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHCTTCCEEEE
T ss_pred             C-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhhcCCceEEEE
Confidence            5 577888887 78999999999999997 688876332                   2445556666666555566666


Q ss_pred             ecccCCcc--hhh-------hccCCEEEecC
Q 020259          116 FCRIEDKD--ISF-------YNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~~~-------~~~~dvVi~~~  137 (328)
                      ..++.+..  ...       +.+.|+||.+.
T Consensus        70 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA  100 (267)
T 1iy8_A           70 VADVSDEAQVEAYVTATTERFGRIDGFFNNA  100 (267)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66665432  222       34679888764

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.37  E-value=0.026  Score=52.24  Aligned_cols=75  Identities=19%  Similarity=0.255  Sum_probs=53.8

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCC---cEEEE
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG---VNIVP  114 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~---v~v~~  114 (328)
                      ...+|.|||+|.+|+.++..|+..|. ..++|+|-+                   ..|++..+..|+...+.   ..+..
T Consensus        18 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~~~~g~a~DL~~~~~~~~~~~i~~   78 (331)
T 4aj2_A           18 PQNKITVVGVGAVGMACAISILMKDLADELALVDVI-------------------EDKLKGEMMDLQHGSLFLKTPKIVS   78 (331)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGCSCCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC-------------------hHHHHHHHHhhhhhhhccCCCeEEE
Confidence            47899999999999999999999997 479998832                   35777777777765322   22221


Q ss_pred             EecccCCcchhhhccCCEEEecCC
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                       .     .+.+-++++|+||.+..
T Consensus        79 -~-----~d~~~~~~aDiVvi~aG   96 (331)
T 4aj2_A           79 -S-----KDYSVTANSKLVIITAG   96 (331)
T ss_dssp             -C-----SSGGGGTTEEEEEECCS
T ss_pred             -c-----CCHHHhCCCCEEEEccC
Confidence             1     12345899999987744

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.35  E-value=0.031  Score=54.18  Aligned_cols=35  Identities=20%  Similarity=0.202  Sum_probs=29.0

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +..+|+|+|+|++|..+++.|+..|--+++++|.+
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~   56 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRT   56 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESS
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECC
Confidence            46789999999999999999999833379998743

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=95.35  E-value=0.074  Score=47.00  Aligned_cols=79  Identities=16%  Similarity=0.281  Sum_probs=57.9

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++++++|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.+..+...+.....
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~   68 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRR-------------------EENVNETIKEIRAQYPDAILQPVVA   68 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS-------------------HHHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCceEEEEec
Confidence            466788887 68999999999999997 68887633                   2456677778888887778777777


Q ss_pred             ccCCcc--hh---hhccCCEEEecC
Q 020259          118 RIEDKD--IS---FYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~~---~~~~~dvVi~~~  137 (328)
                      ++.+..  .+   .+.+.|++|.+.
T Consensus        69 D~~~~~~~~~~~~~~g~id~lv~nA   93 (267)
T 3t4x_A           69 DLGTEQGCQDVIEKYPKVDILINNL   93 (267)
T ss_dssp             CTTSHHHHHHHHHHCCCCSEEEECC
T ss_pred             CCCCHHHHHHHHHhcCCCCEEEECC
Confidence            766532  22   234789998864

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=95.33  E-value=0.065  Score=46.66  Aligned_cols=32  Identities=25%  Similarity=0.416  Sum_probs=27.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ||.|||+|.+|..++++|...|+.-..++|.+
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~   33 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVR   33 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecC
Confidence            69999999999999999998887434688865

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.33  E-value=0.038  Score=51.53  Aligned_cols=88  Identities=14%  Similarity=0.097  Sum_probs=53.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHH--hhCCCcEEEEEec
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVM--ERVSGVNIVPHFC  117 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~--~lnp~v~v~~~~~  117 (328)
                      ..+|.|||+|.+|+.++..|+..|. .++++|.+.-                   +++.+.+.-.  ..-|++.+   +.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~~-------------------~~~~i~~~~~~~~~l~g~~l---~~   85 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYESD-------------------HVDEMQAEGVNNRYLPNYPF---PE   85 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCHH-------------------HHHHHHHHSSBTTTBTTCCC---CT
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHH-------------------HHHHHHHcCCCcccCCCCcc---CC
Confidence            3589999999999999999999996 7899885432                   2222221100  00122211   11


Q ss_pred             cc--CCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          118 RI--EDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       118 ~~--~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .+  .....+.++++|+||.|+.+...+..+.++.
T Consensus        86 ~i~~t~d~~ea~~~aDvVilaVp~~~~~~vl~~i~  120 (356)
T 3k96_A           86 TLKAYCDLKASLEGVTDILIVVPSFAFHEVITRMK  120 (356)
T ss_dssp             TEEEESCHHHHHTTCCEEEECCCHHHHHHHHHHHG
T ss_pred             CeEEECCHHHHHhcCCEEEECCCHHHHHHHHHHHH
Confidence            11  1123456789999999988765555554443

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.32  E-value=0.031  Score=48.47  Aligned_cols=81  Identities=14%  Similarity=0.061  Sum_probs=53.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      +.+|+|+|+|.+|..+++.|...|.  ++++|.+.                   .++    +.+.   +++.  ....+.
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~-------------------~~~----~~~~---~~~~--~i~gd~   58 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV--FVLAEDEN-------------------VRK----KVLR---SGAN--FVHGDP   58 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGG-------------------GHH----HHHH---TTCE--EEESCT
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe--EEEEECCH-------------------HHH----HHHh---cCCe--EEEcCC
Confidence            5789999999999999999998887  88887432                   122    2222   2333  333333


Q ss_pred             CCcc---hhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          120 EDKD---ISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       120 ~~~~---~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .+..   ..-++++|+||.++++.+....+-..+
T Consensus        59 ~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a   92 (234)
T 2aef_A           59 TRVSDLEKANVRGARAVIVDLESDSETIHCILGI   92 (234)
T ss_dssp             TCHHHHHHTTCTTCSEEEECCSCHHHHHHHHHHH
T ss_pred             CCHHHHHhcCcchhcEEEEcCCCcHHHHHHHHHH
Confidence            3221   223678999999988876655555555

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.31  E-value=0.066  Score=51.53  Aligned_cols=33  Identities=39%  Similarity=0.429  Sum_probs=30.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|.+|..+|.+|+..|. +++++|.+.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCH
Confidence            589999999999999999999997 899999765

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=95.31  E-value=0.13  Score=45.58  Aligned_cols=81  Identities=17%  Similarity=0.273  Sum_probs=55.2

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      .| ++.+|+|.| .|++|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++.....++..
T Consensus        29 ~l-~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~   87 (279)
T 1xg5_A           29 RW-RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTV-------------------GNIEELAAECKSAGYPGTLIP   87 (279)
T ss_dssp             GG-TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTCSSEEEE
T ss_pred             cc-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCh-------------------HHHHHHHHHHHhcCCCceEEE
Confidence            47 578899997 78999999999999997 688776431                   345555666666544445666


Q ss_pred             EecccCCcc--hhh-------hccCCEEEecC
Q 020259          115 HFCRIEDKD--ISF-------YNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~~~-------~~~~dvVi~~~  137 (328)
                      ...++.+..  ..+       +.+.|+||.+.
T Consensus        88 ~~~Dl~~~~~v~~~~~~~~~~~g~iD~vi~~A  119 (279)
T 1xg5_A           88 YRCDLSNEEDILSMFSAIRSQHSGVDICINNA  119 (279)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCCSEEEECC
T ss_pred             EEecCCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            666665432  122       24789988864

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.28  E-value=0.2  Score=42.20  Aligned_cols=68  Identities=22%  Similarity=0.279  Sum_probs=46.5

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccC
Q 020259           42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE  120 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~  120 (328)
                      +|+|.| .|++|.++++.|+..|. ++++++.+.                   .+.+       ++.+.++  ....++.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~-------------------~~~~-------~~~~~~~--~~~~D~~   52 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNA-------------------GKIT-------QTHKDIN--ILQKDIF   52 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCS-------------------HHHH-------HHCSSSE--EEECCGG
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCc-------------------hhhh-------hccCCCe--EEecccc
Confidence            699999 59999999999999996 788876431                   1211       1224444  4445554


Q ss_pred             CcchhhhccCCEEEecCC
Q 020259          121 DKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       121 ~~~~~~~~~~dvVi~~~d  138 (328)
                      +...+.+.++|+||.+..
T Consensus        53 d~~~~~~~~~d~vi~~ag   70 (221)
T 3ew7_A           53 DLTLSDLSDQNVVVDAYG   70 (221)
T ss_dssp             GCCHHHHTTCSEEEECCC
T ss_pred             ChhhhhhcCCCEEEECCc
Confidence            443377789999998854

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.27  E-value=0.08  Score=47.00  Aligned_cols=32  Identities=28%  Similarity=0.337  Sum_probs=29.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +|.|||+|.+|+.+++.|+..|. +++++|.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCc
Confidence            69999999999999999999997 899998654

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.26  E-value=0.059  Score=49.16  Aligned_cols=39  Identities=23%  Similarity=0.254  Sum_probs=27.2

Q ss_pred             HHHHHHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           33 LRDDLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        33 ~q~~Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .++.+ +..+|+|.|+ |.+|+.+++.|...|. +++++|..
T Consensus        13 ~~~~~-~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~   52 (347)
T 4id9_A           13 GLVPR-GSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLR   52 (347)
T ss_dssp             ---------CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             ccccc-CCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCC
Confidence            34556 6889999996 9999999999999997 67777654

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=95.26  E-value=0.057  Score=48.47  Aligned_cols=32  Identities=28%  Similarity=0.489  Sum_probs=28.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|.|||+|.+|..++++|...|. +++++|.+
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   37 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRN   37 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            589999999999999999999997 68888743

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=95.25  E-value=0.034  Score=47.97  Aligned_cols=72  Identities=10%  Similarity=0.169  Sum_probs=46.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEE-EeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEV-IDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itl-vD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      -.+|.|||+|.+|..+++.|+..|. ++++ +|.+.                   .|++.+++.+   .  +...     
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~-~V~~v~~r~~-------------------~~~~~l~~~~---g--~~~~-----   72 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQI-PAIIANSRGP-------------------ASLSSVTDRF---G--ASVK-----   72 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTC-CEEEECTTCG-------------------GGGHHHHHHH---T--TTEE-----
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCCH-------------------HHHHHHHHHh---C--CCcc-----
Confidence            3689999999999999999999997 5666 55321                   2333333332   1  1111     


Q ss_pred             cCCcchhhhccCCEEEecCCCHHHH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSIEAR  143 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~~~~  143 (328)
                        ....+.++++|+||.|+.....+
T Consensus        73 --~~~~~~~~~aDvVilavp~~~~~   95 (220)
T 4huj_A           73 --AVELKDALQADVVILAVPYDSIA   95 (220)
T ss_dssp             --ECCHHHHTTSSEEEEESCGGGHH
T ss_pred             --cChHHHHhcCCEEEEeCChHHHH
Confidence              12334468899999998754443

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.25  E-value=0.033  Score=51.09  Aligned_cols=74  Identities=23%  Similarity=0.304  Sum_probs=48.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC---CcEEEEE
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS---GVNIVPH  115 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp---~v~v~~~  115 (328)
                      ..||.|||+|.+|..++-.|+..|. ++|.++|-+.                   .|++..+..+....|   .+++.. 
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~-------------------~~~~g~~~dl~~~~~~~~~~~i~~-   66 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK-------------------EKAIGEAMDINHGLPFMGQMSLYA-   66 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC----------------------CCHHHHHHTTSCCCTTCEEEC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh-------------------HHHHHHHHHHHHhHHhcCCeEEEE-
Confidence            4689999999999999999999886 6799998442                   122222334444323   333332 


Q ss_pred             ecccCCcchhhhccCCEEEecCCC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                            .+.+-++++|+||.+...
T Consensus        67 ------~~~~a~~~aDvVii~~g~   84 (318)
T 1y6j_A           67 ------GDYSDVKDCDVIVVTAGA   84 (318)
T ss_dssp             -------CGGGGTTCSEEEECCCC
T ss_pred             ------CCHHHhCCCCEEEEcCCC
Confidence                  124458999999988654

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.24  E-value=0.13  Score=42.81  Aligned_cols=34  Identities=26%  Similarity=0.467  Sum_probs=29.3

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +.+|+|.|+ |++|.++++.|...|. ++++++.+.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~   37 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDS   37 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCG
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeCh
Confidence            468999996 9999999999999995 888887654

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.23  E-value=0.043  Score=50.98  Aligned_cols=76  Identities=21%  Similarity=0.215  Sum_probs=52.6

Q ss_pred             cCCcEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh-CCCcEEEEE
Q 020259           39 EYARILVVGA-GGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER-VSGVNIVPH  115 (328)
Q Consensus        39 ~~~~VliiG~-gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l-np~v~v~~~  115 (328)
                      ...||.|||+ |.+|+.+|..|+..|. .+++++|-+                   +.|++..+..|+.. .|..++.. 
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~-------------------~~k~~g~a~DL~~~~~~~~~i~~-   66 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF-------------------AVGLEGVAEEIRHCGFEGLNLTF-   66 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC-------------------HHHHHHHHHHHHHHCCTTCCCEE-
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC-------------------chhHHHHHHhhhhCcCCCCceEE-
Confidence            4779999997 9999999999999997 589999832                   24566655555553 23222221 


Q ss_pred             ecccCCcchhhhccCCEEEecCC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                          .....+-++++|+||.+..
T Consensus        67 ----t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A           67 ----TSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             ----ESCHHHHHTTEEEEEECCC
T ss_pred             ----cCCHHHHhCCCCEEEEccC
Confidence                1223455789999988754

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=95.22  E-value=0.066  Score=45.41  Aligned_cols=81  Identities=25%  Similarity=0.217  Sum_probs=50.4

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccC
Q 020259           42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE  120 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~  120 (328)
                      +|+|+| +|.+|+.+++.|...|. +++++|.+.                   .+++.+.+.+...-+...+..      
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~------   55 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRRE-------------------EKAEAKAAEYRRIAGDASITG------   55 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSH-------------------HHHHHHHHHHHHHHSSCCEEE------
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHhccccccCCCCh------
Confidence            699999 99999999999999997 788887432                   133333332221101011221      


Q ss_pred             CcchhhhccCCEEEecCCCHHHHHHHHH
Q 020259          121 DKDISFYNDFNIIVLGLDSIEARSYINA  148 (328)
Q Consensus       121 ~~~~~~~~~~dvVi~~~d~~~~~~~l~~  148 (328)
                      ....+.++++|+||.|+........+.+
T Consensus        56 ~~~~~~~~~~D~Vi~~~~~~~~~~~~~~   83 (212)
T 1jay_A           56 MKNEDAAEACDIAVLTIPWEHAIDTARD   83 (212)
T ss_dssp             EEHHHHHHHCSEEEECSCHHHHHHHHHH
T ss_pred             hhHHHHHhcCCEEEEeCChhhHHHHHHH
Confidence            1124556789999999886555544443

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=95.21  E-value=0.11  Score=45.73  Aligned_cols=79  Identities=19%  Similarity=0.253  Sum_probs=56.7

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +++.++|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.+.++..++.....
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~   66 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARD-------------------GERLRAAESALRQRFPGARLFASVC   66 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHSTTCCEEEEEC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhcCCceEEEEeC
Confidence            467788887 68999999999999998 68887743                   2456667777777667666777777


Q ss_pred             ccCCcc---------hhhhccCCEEEecC
Q 020259          118 RIEDKD---------ISFYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~---------~~~~~~~dvVi~~~  137 (328)
                      ++.+..         .+.+.+.|++|.+.
T Consensus        67 Dv~~~~~v~~~~~~~~~~~g~id~lvnnA   95 (265)
T 3lf2_A           67 DVLDALQVRAFAEACERTLGCASILVNNA   95 (265)
T ss_dssp             CTTCHHHHHHHHHHHHHHHCSCSEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            766532         12234778888764

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=95.21  E-value=0.093  Score=48.14  Aligned_cols=72  Identities=13%  Similarity=0.090  Sum_probs=53.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLALS-GFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~-Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..+|+|||+|+.|...++.|... ++.+++++|.+                   ..|++.+++.+....  +.+. .   
T Consensus       125 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-------------------~~~a~~la~~~~~~~--~~~~-~---  179 (322)
T 1omo_A          125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVR-------------------EKAAKKFVSYCEDRG--ISAS-V---  179 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSS-------------------HHHHHHHHHHHHHTT--CCEE-E---
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhcC--ceEE-E---
Confidence            57899999999999999999874 68899998732                   257888888776531  3332 2   


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                        +...+.+ ++|+|++|+.+
T Consensus       180 --~~~~e~v-~aDvVi~aTp~  197 (322)
T 1omo_A          180 --QPAEEAS-RCDVLVTTTPS  197 (322)
T ss_dssp             --CCHHHHT-SSSEEEECCCC
T ss_pred             --CCHHHHh-CCCEEEEeeCC
Confidence              1234556 89999999875

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.18  E-value=0.12  Score=44.06  Aligned_cols=33  Identities=24%  Similarity=0.514  Sum_probs=28.7

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|+|.| .|.+|..+++.|...|. ++++++.+.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~   38 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHP   38 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCc
Confidence            5899999 59999999999999995 888887653

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.17  E-value=0.019  Score=48.71  Aligned_cols=33  Identities=21%  Similarity=0.395  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +..|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~-~V~v~Ek~   34 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGH-QVHLFDKS   34 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            5779999999999999999999999 79999954

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.15  E-value=0.32  Score=43.81  Aligned_cols=78  Identities=14%  Similarity=0.070  Sum_probs=50.5

Q ss_pred             cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE-e
Q 020259           39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH-F  116 (328)
Q Consensus        39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~-~  116 (328)
                      ++.+|+|.|+ |.+|+++++.|...|. ++++++.+.                   .+.+.+.+.+....+ -+++.. .
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~-~~~~~~~~   68 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSA-------------------SKLANLQKRWDAKYP-GRFETAVV   68 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHHST-TTEEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCc-------------------ccHHHHHHHhhccCC-CceEEEEe
Confidence            4678999996 9999999999999996 677766321                   233334444443332 234444 4


Q ss_pred             cccCCc--chhhhccCCEEEecC
Q 020259          117 CRIEDK--DISFYNDFNIIVLGL  137 (328)
Q Consensus       117 ~~~~~~--~~~~~~~~dvVi~~~  137 (328)
                      .++.+.  -.+.++++|+||.+.
T Consensus        69 ~D~~d~~~~~~~~~~~d~vih~A   91 (342)
T 1y1p_A           69 EDMLKQGAYDEVIKGAAGVAHIA   91 (342)
T ss_dssp             SCTTSTTTTTTTTTTCSEEEECC
T ss_pred             cCCcChHHHHHHHcCCCEEEEeC
Confidence            455432  245567899998874

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=95.12  E-value=0.057  Score=47.47  Aligned_cols=31  Identities=13%  Similarity=0.297  Sum_probs=27.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +|.|||+|.+|+.++++|...|...++++|.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r   32 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANR   32 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECC
Confidence            6999999999999999999999447888763

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=95.11  E-value=0.061  Score=49.86  Aligned_cols=93  Identities=14%  Similarity=0.167  Sum_probs=55.3

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      ..| ..++|.|||+|.+|..+|+.|...|. ++..+|...-.             ..+                 ..  .
T Consensus       167 ~~l-~gktiGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~-------------~~~-----------------~~--~  212 (340)
T 4dgs_A          167 HSP-KGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLS-------------GVD-----------------WI--A  212 (340)
T ss_dssp             CCC-TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCT-------------TSC-----------------CE--E
T ss_pred             ccc-cCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCccc-------------ccC-----------------ce--e
Confidence            458 58999999999999999999999898 78888743211             000                 00  0


Q ss_pred             EecccCCcchhhhccCCEEEecCC-CHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeec
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLD-SIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE  176 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d-~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~  176 (328)
                           .....+.++++|+|+.++. +.+++..+++.....          -+.+..+|+++..
T Consensus       213 -----~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~----------mk~gailIN~aRG  260 (340)
T 4dgs_A          213 -----HQSPVDLARDSDVLAVCVAASAATQNIVDASLLQA----------LGPEGIVVNVARG  260 (340)
T ss_dssp             -----CSSHHHHHHTCSEEEECC----------CHHHHHH----------TTTTCEEEECSCC
T ss_pred             -----cCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhc----------CCCCCEEEECCCC
Confidence                 1234677889999988865 455666664433221          1335557766553

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.11  E-value=0.035  Score=51.27  Aligned_cols=34  Identities=18%  Similarity=0.292  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|.|||+|.+|..++..|+..|...++|+|-+
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~   42 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   42 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            3589999999999999999999998559999854

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.10  E-value=0.11  Score=44.72  Aligned_cols=74  Identities=11%  Similarity=0.152  Sum_probs=48.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +..+|+|.| .|++|.++++.|+..|--++++++.+.-....+.                         .+  .+.....
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~-------------------------~~--~~~~~~~   74 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPY-------------------------PT--NSQIIMG   74 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSC-------------------------CT--TEEEEEC
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccc-------------------------cC--CcEEEEe
Confidence            356799999 7999999999999999337888775432111100                         01  2444555


Q ss_pred             ccCCcc--hhhhccCCEEEecCCC
Q 020259          118 RIEDKD--ISFYNDFNIIVLGLDS  139 (328)
Q Consensus       118 ~~~~~~--~~~~~~~dvVi~~~d~  139 (328)
                      ++.+..  ...++++|+||.+...
T Consensus        75 Dl~d~~~~~~~~~~~D~vv~~a~~   98 (236)
T 3qvo_A           75 DVLNHAALKQAMQGQDIVYANLTG   98 (236)
T ss_dssp             CTTCHHHHHHHHTTCSEEEEECCS
T ss_pred             cCCCHHHHHHHhcCCCEEEEcCCC
Confidence            555432  4567889999877554

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=95.09  E-value=0.068  Score=46.96  Aligned_cols=31  Identities=19%  Similarity=0.392  Sum_probs=27.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .+|.|||+|.+|..++++|...|. .++++|.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~-~v~~~~~   34 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPH-ELIISGS   34 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSC-EEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEECC
Confidence            479999999999999999999984 7888774

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=95.07  E-value=0.082  Score=51.55  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=30.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++.+|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~-~V~v~dr~   42 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGF-TVCAYNRT   42 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            47899999999999999999999998 78898754

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.06  E-value=0.068  Score=48.84  Aligned_cols=71  Identities=21%  Similarity=0.340  Sum_probs=51.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC---CCcEEEEEec
Q 020259           42 RILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV---SGVNIVPHFC  117 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln---p~v~v~~~~~  117 (328)
                      ||.|||+|.+|..++..|+..|. ++|.|+|-+                   +.|++..+..|....   ..+++..   
T Consensus         2 KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~k~~g~a~dl~~~~~~~~~~~v~~---   59 (310)
T 2xxj_A            2 KVGIVGSGMVGSATAYALALLGVAREVVLVDLD-------------------RKLAQAHAEDILHATPFAHPVWVWA---   59 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS-------------------HHHHHHHHHHHHTTGGGSCCCEEEE---
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC-------------------hhHHHHHHHHHHHhHhhcCCeEEEE---
Confidence            79999999999999999998875 579998832                   246666566665543   3445553   


Q ss_pred             ccCCcchhhhccCCEEEecCC
Q 020259          118 RIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d  138 (328)
                        .  +.+-++++|+||.+..
T Consensus        60 --~--~~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A           60 --G--SYGDLEGARAVVLAAG   76 (310)
T ss_dssp             --C--CGGGGTTEEEEEECCC
T ss_pred             --C--CHHHhCCCCEEEECCC
Confidence              1  2445789999988754

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.01  E-value=0.13  Score=43.72  Aligned_cols=67  Identities=18%  Similarity=0.262  Sum_probs=45.8

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccC
Q 020259           42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE  120 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~  120 (328)
                      +|+|.| .|++|.++++.|+..|. ++++++.+.-....+                           +  .++....++.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~---------------------------~--~~~~~~~D~~   51 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY---------------------------N--NVKAVHFDVD   51 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC---------------------------T--TEEEEECCTT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc---------------------------C--CceEEEeccc
Confidence            699999 89999999999999996 788887543211100                           2  2344555555


Q ss_pred             C-c--chhhhccCCEEEecCC
Q 020259          121 D-K--DISFYNDFNIIVLGLD  138 (328)
Q Consensus       121 ~-~--~~~~~~~~dvVi~~~d  138 (328)
                      + .  -.+.++++|+||.+..
T Consensus        52 d~~~~~~~~~~~~d~vi~~ag   72 (219)
T 3dqp_A           52 WTPEEMAKQLHGMDAIINVSG   72 (219)
T ss_dssp             SCHHHHHTTTTTCSEEEECCC
T ss_pred             CCHHHHHHHHcCCCEEEECCc
Confidence            4 2  2455678999988754

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.01  E-value=0.084  Score=46.41  Aligned_cols=80  Identities=15%  Similarity=0.248  Sum_probs=54.6

Q ss_pred             HHcCCcEEEEcC-C-hHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           37 LQEYARILVVGA-G-GLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        37 Lr~~~~VliiG~-g-glG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      | ++.+|+|.|+ | |+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++.. ..++..
T Consensus        20 l-~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~-~~~~~~   77 (266)
T 3o38_A           20 L-KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHE-------------------RRLGETRDQLADLG-LGRVEA   77 (266)
T ss_dssp             T-TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHTTC-SSCEEE
T ss_pred             C-CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCH-------------------HHHHHHHHHHHhcC-CCceEE
Confidence            6 5888999998 6 899999999999997 688877432                   34555666665543 345666


Q ss_pred             EecccCCcc--hh-------hhccCCEEEecCC
Q 020259          115 HFCRIEDKD--IS-------FYNDFNIIVLGLD  138 (328)
Q Consensus       115 ~~~~~~~~~--~~-------~~~~~dvVi~~~d  138 (328)
                      +..++.+..  ..       .+.+.|+||.+..
T Consensus        78 ~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~Ag  110 (266)
T 3o38_A           78 VVCDVTSTEAVDALITQTVEKAGRLDVLVNNAG  110 (266)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEeCCCCHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence            666665422  11       2346788887643

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=95.00  E-value=0.036  Score=51.07  Aligned_cols=37  Identities=19%  Similarity=0.361  Sum_probs=32.8

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..| .+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       133 ~~l-~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  169 (324)
T 3evt_A          133 STL-TGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTT  169 (324)
T ss_dssp             CCS-TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccc-cCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCC
Confidence            457 69999999999999999999999998 78888854

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=94.98  E-value=0.086  Score=46.40  Aligned_cols=29  Identities=21%  Similarity=0.253  Sum_probs=25.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      +|.|||+|.+|..++++|+..|. +++++|
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~-~V~~~~   30 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSL   30 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECC
T ss_pred             eEEEEechHHHHHHHHHHHHCCC-eEEEeC
Confidence            69999999999999999999997 677754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=94.98  E-value=0.055  Score=45.97  Aligned_cols=69  Identities=19%  Similarity=0.169  Sum_probs=46.3

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccC
Q 020259           42 RILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE  120 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~  120 (328)
                      +|+|.|+ |++|.++++.|+..|. ++++++.+.                   .+..    .+  ..+.+  +....++.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~-------------------~~~~----~~--~~~~~--~~~~~D~~   53 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDP-------------------QKAA----DR--LGATV--ATLVKEPL   53 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHH----HH--TCTTS--EEEECCGG
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecc-------------------cccc----cc--cCCCc--eEEecccc
Confidence            5999996 9999999999999996 788876321                   1111    11  12333  34445555


Q ss_pred             CcchhhhccCCEEEecCC
Q 020259          121 DKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       121 ~~~~~~~~~~dvVi~~~d  138 (328)
                      +...+.+.++|+||.+..
T Consensus        54 d~~~~~~~~~d~vi~~ag   71 (224)
T 3h2s_A           54 VLTEADLDSVDAVVDALS   71 (224)
T ss_dssp             GCCHHHHTTCSEEEECCC
T ss_pred             cccHhhcccCCEEEECCc
Confidence            443477889999998864

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.98  E-value=0.041  Score=50.84  Aligned_cols=38  Identities=21%  Similarity=0.428  Sum_probs=29.4

Q ss_pred             HHHHHcCCcEEEEc-CChHHHHHHHHHHHh-CCCeEEEEeCC
Q 020259           34 RDDLQEYARILVVG-AGGLGCELLKDLALS-GFKNLEVIDMD   73 (328)
Q Consensus        34 q~~Lr~~~~VliiG-~gglG~evaknL~l~-Gvg~itlvD~d   73 (328)
                      ...| +..+|+|.| .|.+|+.+++.|... |. +++.+|..
T Consensus        19 ~~~m-~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~   58 (372)
T 3slg_A           19 PGSM-KAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQ   58 (372)
T ss_dssp             -----CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESC
T ss_pred             Cccc-CCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCC
Confidence            4457 678999999 699999999999998 76 78888753

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.97  E-value=0.11  Score=47.49  Aligned_cols=31  Identities=29%  Similarity=0.524  Sum_probs=26.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEE
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVI   70 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlv   70 (328)
                      ...+|+|||+|++|+.++..|+.+|. .++++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~   48 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGH-EVILI   48 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCC-eEEEE
Confidence            35789999999999999999999996 67776

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=94.94  E-value=0.097  Score=48.27  Aligned_cols=73  Identities=18%  Similarity=0.251  Sum_probs=50.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC---CcEEEEE
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS---GVNIVPH  115 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp---~v~v~~~  115 (328)
                      ..+|.|+|+|.+|+.++..|+..|+ ++++++|-+                   +.|++..+..|+...+   ..++...
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~-------------------~~~~~g~a~DL~~~~~~~~~~~i~~t   81 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVM-------------------EDKLKGEMMDLEHGSLFLHTAKIVSG   81 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC-------------------HHHHHHHHHHHHHHGGGSCCSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC-------------------HHHHHHHHHHhhhhhhcccCCeEEEc
Confidence            4789999999999999999999998 689999832                   2345555555554322   3334332


Q ss_pred             ecccCCcchhhhccCCEEEecC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~  137 (328)
                       .     +.+-++++|+||.+.
T Consensus        82 -~-----d~~~~~daDiVIita   97 (330)
T 3ldh_A           82 -K-----DYSVSAGSKLVVITA   97 (330)
T ss_dssp             -S-----SSCSCSSCSEEEECC
T ss_pred             -C-----CHHHhCCCCEEEEeC
Confidence             1     122379999998764

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=94.90  E-value=0.085  Score=48.25  Aligned_cols=80  Identities=14%  Similarity=0.206  Sum_probs=51.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC---CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF---KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv---g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      ..+|.|||+|.+|+.++++|..+|+   ..++++|.+.-                 ..+++.+.    +.  .+.+.   
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~-----------------~~~~~~l~----~~--G~~~~---   75 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMD-----------------LATVSALR----KM--GVKLT---   75 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTT-----------------SHHHHHHH----HH--TCEEE---
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCcc-----------------HHHHHHHH----Hc--CCEEe---
Confidence            4589999999999999999999995   57888763310                 01333332    22  23221   


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAV  149 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~  149 (328)
                          ....+..+++|+||.|+-+......+.++
T Consensus        76 ----~~~~e~~~~aDvVilav~~~~~~~vl~~l  104 (322)
T 2izz_A           76 ----PHNKETVQHSDVLFLAVKPHIIPFILDEI  104 (322)
T ss_dssp             ----SCHHHHHHHCSEEEECSCGGGHHHHHHHH
T ss_pred             ----CChHHHhccCCEEEEEeCHHHHHHHHHHH
Confidence                12345567889999998765555555443

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=94.85  E-value=0.11  Score=45.41  Aligned_cols=79  Identities=19%  Similarity=0.265  Sum_probs=53.3

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCC-cEEEEEe
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG-VNIVPHF  116 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~-v~v~~~~  116 (328)
                      ++..++|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.+.++. .++..+.
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~   65 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARS-------------------KQNLEKVHDEIMRSNKHVQEPIVLP   65 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTSCCCEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHhccccCcceEEe
Confidence            467788888 68999999999999998 78887743                   23566666677666554 4555555


Q ss_pred             cccCCcc--h-------hhhccCCEEEecC
Q 020259          117 CRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       117 ~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      .++.+..  .       +.+.+.|++|.+.
T Consensus        66 ~Dv~~~~~v~~~~~~~~~~~g~iD~lvnnA   95 (250)
T 3nyw_A           66 LDITDCTKADTEIKDIHQKYGAVDILVNAA   95 (250)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred             ccCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            5655421  1       1234677777764

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=94.83  E-value=0.16  Score=49.09  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=29.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|.|||+|.+|..++++|+..|. +++++|.+
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~-~V~v~dr~   37 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGY-TVAIYNRT   37 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            4689999999999999999999998 68888743

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=94.82  E-value=0.061  Score=49.26  Aligned_cols=72  Identities=21%  Similarity=0.208  Sum_probs=52.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLALS-GFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~-Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..+++|||+|..|...++.|... ++.+|+++|.+                     |++.+++++++.. .+.+...   
T Consensus       121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~---------------------~a~~la~~l~~~~-g~~~~~~---  175 (313)
T 3hdj_A          121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY---------------------ASPEILERIGRRC-GVPARMA---  175 (313)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT---------------------CCHHHHHHHHHHH-TSCEEEC---
T ss_pred             CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc---------------------HHHHHHHHHHHhc-CCeEEEe---
Confidence            56899999999999999999874 78899998733                     4455566665432 3344332   


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                         ...+.+.++|+||+|+.+
T Consensus       176 ---~~~eav~~aDIVi~aT~s  193 (313)
T 3hdj_A          176 ---APADIAAQADIVVTATRS  193 (313)
T ss_dssp             ---CHHHHHHHCSEEEECCCC
T ss_pred             ---CHHHHHhhCCEEEEccCC
Confidence               235667899999999875

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.79  E-value=0.15  Score=45.69  Aligned_cols=32  Identities=31%  Similarity=0.441  Sum_probs=28.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|+|||+|.+|+.++..|+..|. +++++|.+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            479999999999999999999997 78888743

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=94.79  E-value=0.14  Score=44.68  Aligned_cols=78  Identities=19%  Similarity=0.302  Sum_probs=52.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++.+|+|.| .||+|.++++.|+..|...+.++|.+.                   .+  ...+.+.+..+..++..+..
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~-------------------~~--~~~~~l~~~~~~~~~~~~~~   62 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE-------------------NP--TALAELKAINPKVNITFHTY   62 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC-------------------CH--HHHHHHHHHCTTSEEEEEEC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCc-------------------hH--HHHHHHHHhCCCceEEEEEE
Confidence            467899997 789999999999999986688876431                   00  12334455555556777777


Q ss_pred             ccCCc-c--hhh-------hccCCEEEecC
Q 020259          118 RIEDK-D--ISF-------YNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~-~--~~~-------~~~~dvVi~~~  137 (328)
                      ++.+. .  .+.       +.+.|+||.+.
T Consensus        63 D~~~~~~~~~~~~~~~~~~~g~id~lv~~A   92 (254)
T 1sby_A           63 DVTVPVAESKKLLKKIFDQLKTVDILINGA   92 (254)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ecCCChHHHHHHHHHHHHhcCCCCEEEECC
Confidence            76643 2  122       24789998864

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=94.75  E-value=0.06  Score=48.21  Aligned_cols=31  Identities=26%  Similarity=0.483  Sum_probs=27.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +|.|||+|.+|..++++|...|. +++++|.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~   32 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVF   32 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSS
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            69999999999999999999997 68888743

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=94.74  E-value=0.14  Score=45.81  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=28.6

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|+|.| .|.+|+.+++.|...|. +++.++..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   35 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRS   35 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            46899999 69999999999999997 78887754

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=94.72  E-value=0.072  Score=47.65  Aligned_cols=81  Identities=15%  Similarity=0.178  Sum_probs=51.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..+|.|||+|.+|..+++.|...|.+ +++++|.+.                   .+++.    +.+..  +....    
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~-------------------~~~~~----~~~~g--~~~~~----   56 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD-------------------RSRDI----ALERG--IVDEA----   56 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH-------------------HHHHH----HHHTT--SCSEE----
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH-------------------HHHHH----HHHcC--Ccccc----
Confidence            46899999999999999999999643 677776332                   12222    22211  10001    


Q ss_pred             cCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                       .....+.++++|+||.|+........+.++.
T Consensus        57 -~~~~~~~~~~aDvVilavp~~~~~~v~~~l~   87 (290)
T 3b1f_A           57 -TADFKVFAALADVIILAVPIKKTIDFIKILA   87 (290)
T ss_dssp             -ESCTTTTGGGCSEEEECSCHHHHHHHHHHHH
T ss_pred             -cCCHHHhhcCCCEEEEcCCHHHHHHHHHHHH
Confidence             1122345678999999988766655555543

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=94.64  E-value=0.089  Score=47.91  Aligned_cols=35  Identities=23%  Similarity=0.233  Sum_probs=27.4

Q ss_pred             cCCcEEEEcC-ChHHHHHHHHHHHhCCC-eEEEEeCC
Q 020259           39 EYARILVVGA-GGLGCELLKDLALSGFK-NLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~-gglG~evaknL~l~Gvg-~itlvD~d   73 (328)
                      +..+|+|.|+ |.+|+.+++.|...|.. +++.+|..
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~   59 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDAL   59 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecc
Confidence            4578999996 99999999999999942 55666543

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=94.63  E-value=0.2  Score=43.79  Aligned_cols=79  Identities=25%  Similarity=0.312  Sum_probs=49.9

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++++++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..+..++.....
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~   65 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNR-------------------EKLEAAASRIASLVSGAQVDIVAG   65 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHSTTCCEEEEEC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCCCCeEEEEEc
Confidence            467788887 68999999999999997 688876432                   234445555554433334555555


Q ss_pred             ccCCcc--hhhhc------cCCEEEecC
Q 020259          118 RIEDKD--ISFYN------DFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~~~~~------~~dvVi~~~  137 (328)
                      ++.+..  ...++      +.|+||.+.
T Consensus        66 D~~~~~~v~~~~~~~~~~~gid~lv~~A   93 (260)
T 2z1n_A           66 DIREPGDIDRLFEKARDLGGADILVYST   93 (260)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCSEEEECC
T ss_pred             cCCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence            555421  22222      378887764

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=94.63  E-value=0.13  Score=47.37  Aligned_cols=77  Identities=16%  Similarity=0.186  Sum_probs=53.7

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHh-CCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           39 EYARILVVG-AGGLGCELLKDLALS-GFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~-Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      ++.+|+|.| .|++|+++++.|+.. |..++++++.+.                   .|.+.+.+.+.    ...+....
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~-------------------~~~~~~~~~~~----~~~v~~~~   76 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDE-------------------LKQSEMAMEFN----DPRMRFFI   76 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCH-------------------HHHHHHHHHHC----CTTEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECCh-------------------hhHHHHHHHhc----CCCEEEEE
Confidence            578899999 699999999999999 987898887432                   23333333332    12455566


Q ss_pred             cccCCcc--hhhhccCCEEEecCC
Q 020259          117 CRIEDKD--ISFYNDFNIIVLGLD  138 (328)
Q Consensus       117 ~~~~~~~--~~~~~~~dvVi~~~d  138 (328)
                      .++.+..  ...++++|+||.+..
T Consensus        77 ~Dl~d~~~l~~~~~~~D~Vih~Aa  100 (344)
T 2gn4_A           77 GDVRDLERLNYALEGVDICIHAAA  100 (344)
T ss_dssp             CCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CCCCCHHHHHHHHhcCCEEEECCC
Confidence            6665532  456778999988754

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=94.58  E-value=0.089  Score=47.71  Aligned_cols=32  Identities=22%  Similarity=0.388  Sum_probs=28.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|.|||+|.+|+.+++.|...|. +++++|.+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~   62 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRT   62 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            579999999999999999999997 68888754

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=94.57  E-value=0.097  Score=47.65  Aligned_cols=30  Identities=23%  Similarity=0.412  Sum_probs=27.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +|.|||+|.+|+.++..|+..|. +++++|.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-eEEEEEc
Confidence            69999999999999999999996 7999875

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.55  E-value=0.096  Score=47.48  Aligned_cols=31  Identities=26%  Similarity=0.446  Sum_probs=28.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ..+|.|||+|-+|+.+|.+|+ +|. .++++|.
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~   42 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDV   42 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECS
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEEC
Confidence            578999999999999999999 998 7999884

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=94.54  E-value=0.19  Score=45.86  Aligned_cols=83  Identities=17%  Similarity=0.098  Sum_probs=51.5

Q ss_pred             HHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh-CCCcEEEE
Q 020259           37 LQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER-VSGVNIVP  114 (328)
Q Consensus        37 Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l-np~v~v~~  114 (328)
                      + +..+|+|.|+ |.+|+.+++.|...|. +++++|...-.               ...+.+.+.+.+... .+  .++.
T Consensus        25 ~-~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~---------------~~~~~~~~~~~~~~~~~~--~~~~   85 (352)
T 1sb8_A           25 A-QPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATG---------------HQRNLDEVRSLVSEKQWS--NFKF   85 (352)
T ss_dssp             H-SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC---------------CHHHHHHHHHHSCHHHHT--TEEE
T ss_pred             c-cCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCcc---------------chhhHHHHhhhcccccCC--ceEE
Confidence            5 5678999996 9999999999999996 78887743210               011222222222111 12  3445


Q ss_pred             EecccCCcc--hhhhccCCEEEecCC
Q 020259          115 HFCRIEDKD--ISFYNDFNIIVLGLD  138 (328)
Q Consensus       115 ~~~~~~~~~--~~~~~~~dvVi~~~d  138 (328)
                      ...++.+..  .+.++++|+||.+..
T Consensus        86 ~~~Dl~d~~~~~~~~~~~d~vih~A~  111 (352)
T 1sb8_A           86 IQGDIRNLDDCNNACAGVDYVLHQAA  111 (352)
T ss_dssp             EECCTTSHHHHHHHHTTCSEEEECCS
T ss_pred             EECCCCCHHHHHHHhcCCCEEEECCc
Confidence            555665432  456779999998754

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.51  E-value=0.095  Score=45.62  Aligned_cols=78  Identities=22%  Similarity=0.337  Sum_probs=53.7

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      + ++++|+|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.+..+  ++...
T Consensus         7 ~-~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~   63 (253)
T 3qiv_A            7 F-ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADIN-------------------AEAAEAVAKQIVADGG--TAISV   63 (253)
T ss_dssp             T-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--EEEEE
T ss_pred             c-CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCC-------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence            5 577889998 68999999999999998 68887743                   2455666666666544  45555


Q ss_pred             ecccCCcc--hh-------hhccCCEEEecC
Q 020259          116 FCRIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      ..++.+..  ..       .+.+.|+||.+.
T Consensus        64 ~~D~~~~~~~~~~~~~~~~~~g~id~li~~A   94 (253)
T 3qiv_A           64 AVDVSDPESAKAMADRTLAEFGGIDYLVNNA   94 (253)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66665422  22       234789888764

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.47  E-value=0.042  Score=51.68  Aligned_cols=37  Identities=30%  Similarity=0.470  Sum_probs=34.7

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +| ++.+|+|+|+|..|..+++.|+.+|+++|+++|.+
T Consensus       189 ~l-~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          189 KI-EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             CT-TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CC-CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            46 68999999999999999999999999999999976

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.42  E-value=0.26  Score=44.81  Aligned_cols=32  Identities=31%  Similarity=0.511  Sum_probs=27.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGF-KNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv-g~itlvD~d   73 (328)
                      +|.|||+|.+|+.++..|+..|. .+++++|.+
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~   34 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            69999999999999999998754 479999854

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=94.40  E-value=0.038  Score=49.78  Aligned_cols=37  Identities=30%  Similarity=0.331  Sum_probs=33.7

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      + ++++|+|+|+||.|..++..|...|++++++++.+.
T Consensus       115 l-~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          115 I-EDAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             G-GGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             c-CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            5 478999999999999999999999999999997654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=94.37  E-value=0.25  Score=45.08  Aligned_cols=91  Identities=16%  Similarity=0.207  Sum_probs=54.5

Q ss_pred             cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +..+|+|.|+ |.+|..+++.|...|. ++++++.+.               +-...|+..+ +.+..  +.+  +....
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~---------------~~~~~~~~~~-~~l~~--~~v--~~~~~   67 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHR-PTYILARPG---------------PRSPSKAKIF-KALED--KGA--IIVYG   67 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSS---------------CCCHHHHHHH-HHHHH--TTC--EEEEC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCC---------------CCChhHHHHH-HHHHh--CCc--EEEEe
Confidence            4578999997 9999999999999995 677776432               0011233222 22222  333  34455


Q ss_pred             ccCCcc--hhhhc--cCCEEEecCC--CHHHHHHHHHHH
Q 020259          118 RIEDKD--ISFYN--DFNIIVLGLD--SIEARSYINAVA  150 (328)
Q Consensus       118 ~~~~~~--~~~~~--~~dvVi~~~d--~~~~~~~l~~~~  150 (328)
                      ++.+..  ...++  ++|+||.+..  +......+-+.|
T Consensus        68 Dl~d~~~l~~~~~~~~~d~Vi~~a~~~n~~~~~~l~~aa  106 (346)
T 3i6i_A           68 LINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAM  106 (346)
T ss_dssp             CTTCHHHHHHHHHHTTCCEEEECCCGGGGGGHHHHHHHH
T ss_pred             ecCCHHHHHHHHhhCCCCEEEECCchhhHHHHHHHHHHH
Confidence            555422  45677  9999998865  333334444555

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=94.34  E-value=0.15  Score=47.44  Aligned_cols=90  Identities=17%  Similarity=0.271  Sum_probs=53.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC------CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh--hCCCcE-
Q 020259           41 ARILVVGAGGLGCELLKDLALSGF------KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME--RVSGVN-  111 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gv------g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~--lnp~v~-  111 (328)
                      .+|.|||+|.+|+.++..|+.+|.      ..++++|.+.-.              .++.+++.+.+.-..  .-|... 
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~~   87 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFV--------------NGERMVDIINNKHENTKYLKGVPL   87 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC-----------------CCHHHHHHHHCBCTTTSTTCBC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhh--------------hhHHHHHHHHhcCcccccCCcccC
Confidence            479999999999999999999992      378998854210              123355444332100  011211 


Q ss_pred             ---EEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259          112 ---IVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAV  149 (328)
Q Consensus       112 ---v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~  149 (328)
                         +...     ....+.++++|+||.|+-+...+..+.++
T Consensus        88 ~~~i~~~-----~~~~ea~~~aDvVilav~~~~~~~vl~~i  123 (375)
T 1yj8_A           88 PHNIVAH-----SDLASVINDADLLIFIVPCQYLESVLASI  123 (375)
T ss_dssp             CTTEEEE-----SSTHHHHTTCSEEEECCCHHHHHHHHHHH
T ss_pred             cCCeEEE-----CCHHHHHcCCCEEEEcCCHHHHHHHHHHH
Confidence               1111     12345567899999998875555444433

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=94.31  E-value=0.22  Score=45.18  Aligned_cols=71  Identities=17%  Similarity=0.212  Sum_probs=48.2

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCC-eEEEEeC--CccCccCCccccCCCCCCCCChHHHHHHHHHHh---hCCCcEEEE
Q 020259           42 RILVVG-AGGLGCELLKDLALSGFK-NLEVIDM--DRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME---RVSGVNIVP  114 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~Gvg-~itlvD~--d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~---lnp~v~v~~  114 (328)
                      ||+|+| +|.+|..++..|+..|.. ++.|+|-  +.                   .|++..+..+..   ....+++..
T Consensus         2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~-------------------~~~~~~~~dl~~~~~~~~~~~v~~   62 (303)
T 1o6z_A            2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKE-------------------DDTVGQAADTNHGIAYDSNTRVRQ   62 (303)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGH-------------------HHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCCh-------------------hhHHHHHHHHHHHHhhCCCcEEEe
Confidence            799999 999999999999988864 5888884  21                   233332333333   245566655


Q ss_pred             EecccCCcchhhhccCCEEEecCC
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                        .     +.+.++++|+||.+..
T Consensus        63 --~-----~~~a~~~aDvVi~~ag   79 (303)
T 1o6z_A           63 --G-----GYEDTAGSDVVVITAG   79 (303)
T ss_dssp             --C-----CGGGGTTCSEEEECCC
T ss_pred             --C-----CHHHhCCCCEEEEcCC
Confidence              1     2455789999988754

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=94.25  E-value=0.063  Score=52.18  Aligned_cols=34  Identities=21%  Similarity=0.331  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|.|||+|.+|..+|++|+..|. +++++|.+.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence            4689999999999999999999997 799998654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=94.21  E-value=0.32  Score=41.21  Aligned_cols=74  Identities=9%  Similarity=0.135  Sum_probs=48.2

Q ss_pred             CcEEEEc-CChHHHHHHHHHH-HhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           41 ARILVVG-AGGLGCELLKDLA-LSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~-l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ++|+|.| .|++|.++++.|+ ..|. ++++++.+.-+                  +.+    .+.+..+  .+.....+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~------------------~~~----~~~~~~~--~~~~~~~D   60 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKT------------------RIP----PEIIDHE--RVTVIEGS   60 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHH------------------HSC----HHHHTST--TEEEEECC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccc------------------cch----hhccCCC--ceEEEECC
Confidence            4599999 6999999999999 8998 78887743210                  111    1111233  34455556


Q ss_pred             cCCcc--hhhhccCCEEEecCCC
Q 020259          119 IEDKD--ISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~--~~~~~~~dvVi~~~d~  139 (328)
                      +.+..  .+.++++|+||.+...
T Consensus        61 ~~d~~~~~~~~~~~d~vv~~ag~   83 (221)
T 3r6d_A           61 FQNPGXLEQAVTNAEVVFVGAME   83 (221)
T ss_dssp             TTCHHHHHHHHTTCSEEEESCCC
T ss_pred             CCCHHHHHHHHcCCCEEEEcCCC
Confidence            65432  4567899999988653

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=94.17  E-value=0.21  Score=48.45  Aligned_cols=42  Identities=19%  Similarity=0.177  Sum_probs=34.0

Q ss_pred             HHHHHHcCCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCcc
Q 020259           33 LRDDLQEYARILVVGAGGLGCELLKDLALS-GFKNLEVIDMDRI   75 (328)
Q Consensus        33 ~q~~Lr~~~~VliiG~gglG~evaknL~l~-Gvg~itlvD~d~v   75 (328)
                      ..++. .-.+|.|||+|.+|..+|.+|+.. |...++++|.+.-
T Consensus        12 ~~~~~-~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           12 LKERG-PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             HHHHC-SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             HhhcC-CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            34444 456899999999999999999999 8757999996643

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=94.09  E-value=0.5  Score=40.38  Aligned_cols=37  Identities=22%  Similarity=0.465  Sum_probs=31.1

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCC-eEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFK-NLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg-~itlvD~d   73 (328)
                      .| +..+|+|.| .|++|.++++.|+..|.. ++++++.+
T Consensus        15 ~m-~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~   53 (242)
T 2bka_A           15 RM-QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRR   53 (242)
T ss_dssp             HH-TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             hh-cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcC
Confidence            36 578899999 699999999999999973 78888754

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.08  E-value=0.057  Score=50.88  Aligned_cols=38  Identities=26%  Similarity=0.424  Sum_probs=35.4

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ++ ++.||+|+|+|..|..+++.|+.+|+++|+++|.+-
T Consensus       185 ~l-~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          185 SL-DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             CT-TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CC-CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            57 688999999999999999999999999999999875

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=94.08  E-value=0.15  Score=46.81  Aligned_cols=91  Identities=14%  Similarity=0.189  Sum_probs=54.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC------CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh--hCCCc-
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF------KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME--RVSGV-  110 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv------g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~--lnp~v-  110 (328)
                      ..+|.|||+|.+|+.++..|+.+|.      .+++++|.+.-.              .++.+++.+.+.-..  .-|.. 
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~   73 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDI--------------GGKKLTEIINTQHENVKYLPGHK   73 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBS--------------SSSBHHHHHHHHSCCTTTSTTCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhh--------------hhhHHHHHHHhcCcccccCCccc
Confidence            4589999999999999999999992      378998854310              113344444322100  01111 


Q ss_pred             ---EEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259          111 ---NIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAV  149 (328)
Q Consensus       111 ---~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~  149 (328)
                         .+...     ....+.++++|+||.|+-+......+..+
T Consensus        74 ~~~~~~~~-----~~~~~~~~~aD~Vilav~~~~~~~v~~~i  110 (354)
T 1x0v_A           74 LPPNVVAV-----PDVVQAAEDADILIFVVPHQFIGKICDQL  110 (354)
T ss_dssp             CCTTEEEE-----SSHHHHHTTCSEEEECCCGGGHHHHHHHH
T ss_pred             CccCeEEE-----cCHHHHHcCCCEEEEeCCHHHHHHHHHHH
Confidence               11111     12235567899999998775555555443

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=94.02  E-value=0.26  Score=44.64  Aligned_cols=36  Identities=33%  Similarity=0.454  Sum_probs=30.3

Q ss_pred             HHHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+ ++.+|+|.|+ |++|+++++.|+..|. +++++|..
T Consensus        17 ~~-~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~   53 (330)
T 2pzm_A           17 RG-SHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNF   53 (330)
T ss_dssp             TT-TCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECC
T ss_pred             cC-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            35 4678999996 9999999999999996 78888753

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=94.00  E-value=0.37  Score=46.59  Aligned_cols=31  Identities=32%  Similarity=0.551  Sum_probs=28.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +|.|||+|.+|+.++++|+..|. +++++|.+
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~-~V~v~dr~   33 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRT   33 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEEEChHHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            69999999999999999999998 68888754

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=94.00  E-value=0.21  Score=43.42  Aligned_cols=77  Identities=17%  Similarity=0.233  Sum_probs=50.2

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++.+|+|.| .|++|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++..+  ++.....
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~--~~~~~~~   69 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDE-------------------AMATKAVEDLRMEGH--DVSSVVM   69 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTC--CEEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--ceEEEEe
Confidence            467899997 68999999999999997 788876332                   234445555655443  3445555


Q ss_pred             ccCCcc--hhh-------hccCCEEEecC
Q 020259          118 RIEDKD--ISF-------YNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~~~-------~~~~dvVi~~~  137 (328)
                      ++.+..  .+.       +.+.|+||.+.
T Consensus        70 D~~~~~~~~~~~~~~~~~~~~id~vi~~A   98 (260)
T 3awd_A           70 DVTNTESVQNAVRSVHEQEGRVDILVACA   98 (260)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            555421  122       23688888764

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.97  E-value=0.31  Score=43.07  Aligned_cols=78  Identities=13%  Similarity=0.267  Sum_probs=55.3

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | +++.++|-| .+|+|.++|+.|+..|. ++.++|.+                   +.+.+.+++.+++...  ++..+
T Consensus         5 L-~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~-------------------~~~~~~~~~~i~~~g~--~~~~~   61 (254)
T 4fn4_A            5 L-KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELL-------------------EDRLNQIVQELRGMGK--EVLGV   61 (254)
T ss_dssp             G-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             C-CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence            6 577777777 78999999999999998 78888732                   2467777777877644  45556


Q ss_pred             ecccCCcc---------hhhhccCCEEEecC
Q 020259          116 FCRIEDKD---------ISFYNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~---------~~~~~~~dvVi~~~  137 (328)
                      ..++.+..         .+.+.+.|++|+..
T Consensus        62 ~~Dvt~~~~v~~~~~~~~~~~G~iDiLVNNA   92 (254)
T 4fn4_A           62 KADVSKKKDVEEFVRRTFETYSRIDVLCNNA   92 (254)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            66665421         23456788888753

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=93.95  E-value=0.081  Score=49.96  Aligned_cols=89  Identities=16%  Similarity=0.191  Sum_probs=53.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-------eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh--C----
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFK-------NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER--V----  107 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg-------~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l--n----  107 (328)
                      .||.|+|+|+-|+.+|+.|+..|-+       .++++-.+.-              -.++.-    .+.+++.  |    
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e--------------~~~~~~----~e~in~~~~N~~YL   96 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEE--------------INGEKL----TEIINTRHQNVKYL   96 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCB--------------SSSCBH----HHHHTTTCCBTTTB
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchH--------------hhhHHH----HHHHHhcCcCcccC
Confidence            4899999999999999999998743       4778743320              001111    1112111  1    


Q ss_pred             CCcEEEEEeccc--CCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          108 SGVNIVPHFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       108 p~v~v~~~~~~~--~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      |++++   +..+  ...-.+.++++|+||.++.+...+..+.++.
T Consensus        97 pgv~L---p~~i~~t~dl~~al~~ad~ii~avPs~~~r~~l~~l~  138 (391)
T 4fgw_A           97 PGITL---PDNLVANPDLIDSVKDVDIIVFNIPHQFLPRICSQLK  138 (391)
T ss_dssp             TTCCC---CSSEEEESCHHHHHTTCSEEEECSCGGGHHHHHHHHT
T ss_pred             CCCcC---CCCcEEeCCHHHHHhcCCEEEEECChhhhHHHHHHhc
Confidence            22221   1111  1123566789999999999987777666654

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=93.94  E-value=0.16  Score=44.52  Aligned_cols=78  Identities=22%  Similarity=0.353  Sum_probs=52.8

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++++++|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+++..+  ++..+
T Consensus        10 l-~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~   66 (256)
T 3gaf_A           10 L-NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLK-------------------SEGAEAVAAAIRQAGG--KAIGL   66 (256)
T ss_dssp             C-TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESS-------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             C-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence            5 467788887 78999999999999998 68887742                   2356666677766544  44555


Q ss_pred             ecccCCcc--h-------hhhccCCEEEecC
Q 020259          116 FCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      ..++.+..  .       +.+.+.|++|.+.
T Consensus        67 ~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA   97 (256)
T 3gaf_A           67 ECNVTDEQHREAVIKAALDQFGKITVLVNNA   97 (256)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            55655421  1       2234788888763

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=93.90  E-value=0.21  Score=44.04  Aligned_cols=31  Identities=26%  Similarity=0.474  Sum_probs=24.2

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHh-CCCeEEEEeC
Q 020259           42 RILVVGA-GGLGCELLKDLALS-GFKNLEVIDM   72 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~-Gvg~itlvD~   72 (328)
                      ||.|+|+ |.+|..+++.+... |..=+.++|.
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~   34 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDA   34 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEcc
Confidence            6999997 99999999998765 7643446664

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.89  E-value=0.11  Score=45.97  Aligned_cols=91  Identities=18%  Similarity=0.162  Sum_probs=56.3

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      +| ++++|+|.| .||+|.++++.|+..|. ++.++|.+.-...+-.       ......+.+.+.+.+....+  ++..
T Consensus         7 ~l-~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~   75 (287)
T 3pxx_A            7 RV-QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEY-------PLATSRDLEEAGLEVEKTGR--KAYT   75 (287)
T ss_dssp             TT-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCS-------CCCCHHHHHHHHHHHHHTTS--CEEE
T ss_pred             cc-CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEccccccccccc-------chhhhHHHHHHHHHHHhcCC--ceEE
Confidence            46 578889998 67999999999999997 6888875421111100       00112345555666666543  5556


Q ss_pred             EecccCCcc--hh-------hhccCCEEEecC
Q 020259          115 HFCRIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      +..++.+..  ..       .+.+.|++|.+.
T Consensus        76 ~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA  107 (287)
T 3pxx_A           76 AEVDVRDRAAVSRELANAVAEFGKLDVVVANA  107 (287)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            666665422  12       234789998863

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=93.88  E-value=0.2  Score=44.60  Aligned_cols=79  Identities=16%  Similarity=0.233  Sum_probs=50.9

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      .+ +.+.++|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+++..+  ++..
T Consensus        21 m~-~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~--~~~~   77 (279)
T 3sju_A           21 MS-RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARD-------------------AKNVSAAVDGLRAAGH--DVDG   77 (279)
T ss_dssp             -----CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTTC--CEEE
T ss_pred             cc-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCC--cEEE
Confidence            35 467788888 68999999999999998 68777643                   2355666667766543  4555


Q ss_pred             EecccCCcc--h-------hhhccCCEEEecC
Q 020259          115 HFCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      ...++.+..  .       +.+.+.|+||.+.
T Consensus        78 ~~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA  109 (279)
T 3sju_A           78 SSCDVTSTDEVHAAVAAAVERFGPIGILVNSA  109 (279)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCSCCEEEECC
T ss_pred             EECCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            555655421  1       2234678888764

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=93.81  E-value=0.3  Score=43.33  Aligned_cols=95  Identities=20%  Similarity=0.160  Sum_probs=57.9

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      +| +++.++|.| .+|+|.++++.|+..|. ++.++|.+.-.........+.   .-...+.+.+++.+....+  ++..
T Consensus         8 ~l-~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~   80 (286)
T 3uve_A            8 RV-EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIP---ASTPEDLAETADLVKGHNR--RIVT   80 (286)
T ss_dssp             TT-TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSC---CCCHHHHHHHHHHHHTTTC--CEEE
T ss_pred             cc-CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccc---cCCHHHHHHHHHHHhhcCC--ceEE
Confidence            35 577888888 67999999999999998 688888653222111111000   0113455566666665543  5566


Q ss_pred             EecccCCcc--h-------hhhccCCEEEecC
Q 020259          115 HFCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      +..++.+..  .       +.+.+.|++|.+.
T Consensus        81 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA  112 (286)
T 3uve_A           81 AEVDVRDYDALKAAVDSGVEQLGRLDIIVANA  112 (286)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            666665422  1       2234789998864

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=93.80  E-value=0.15  Score=44.82  Aligned_cols=78  Identities=17%  Similarity=0.293  Sum_probs=53.6

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++.+|+|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.+..+  ++..+
T Consensus        27 l-~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~   83 (262)
T 3rkr_A           27 L-SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARD-------------------VEKLRAVEREIVAAGG--EAESH   83 (262)
T ss_dssp             T-TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--EEEEE
T ss_pred             c-CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHhCC--ceeEE
Confidence            5 467888888 68999999999999998 68887743                   2456666677766544  55566


Q ss_pred             ecccCCcc--h-------hhhccCCEEEecC
Q 020259          116 FCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      ..++.+..  .       +.+.+.|+||.+.
T Consensus        84 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~~A  114 (262)
T 3rkr_A           84 ACDLSHSDAIAAFATGVLAAHGRCDVLVNNA  114 (262)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EecCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            66665422  1       2234689888764

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=93.80  E-value=0.26  Score=47.70  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=28.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|.|||+|.+|..++.+|+..|. +++++|.+
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~-~V~v~dr~   34 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRT   34 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            479999999999999999999998 68888754

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=93.79  E-value=0.29  Score=43.33  Aligned_cols=92  Identities=14%  Similarity=0.195  Sum_probs=58.1

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      .| +++.++|.| .||+|.++++.|+..|. ++.++|.+.-....+...      .-...+.+.+++.+.+..+  ++..
T Consensus        12 ~l-~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~   81 (280)
T 3pgx_A           12 SL-QGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYA------PASPEDLDETARLVEDQGR--KALT   81 (280)
T ss_dssp             TT-TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSC------CCCHHHHHHHHHHHHTTTC--CEEE
T ss_pred             cc-CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecccccccccccc------ccCHHHHHHHHHHHHhcCC--eEEE
Confidence            36 577888888 68999999999999998 788888643222111110      1123456666677766543  4555


Q ss_pred             EecccCCcc--h-------hhhccCCEEEecC
Q 020259          115 HFCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      +..++.+..  .       +.+.+.|++|.+.
T Consensus        82 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA  113 (280)
T 3pgx_A           82 RVLDVRDDAALRELVADGMEQFGRLDVVVANA  113 (280)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            656665422  1       2234789998874

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=93.78  E-value=0.3  Score=44.58  Aligned_cols=74  Identities=18%  Similarity=0.235  Sum_probs=49.8

Q ss_pred             cEEEEc-CChHHHHHHHHHHHh-CC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           42 RILVVG-AGGLGCELLKDLALS-GF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~-Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ||.|+| +|.+|..++..|... +. .+|.|+|-+.                    |++..+-.|+.....+++..+.. 
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~--------------------~~~G~a~Dl~~~~~~~~v~~~~~-   60 (312)
T 3hhp_A            2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP--------------------VTPGVAVDLSHIPTAVKIKGFSG-   60 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST--------------------THHHHHHHHHTSCSSEEEEEECS-
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC--------------------CchhHHHHhhCCCCCceEEEecC-
Confidence            799999 899999999999876 55 5899988432                    12222344454433455555421 


Q ss_pred             cCCcchhhhccCCEEEecCC
Q 020259          119 IEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d  138 (328)
                        ..+.+-++++|+||.+..
T Consensus        61 --~~~~~~~~~aDivii~ag   78 (312)
T 3hhp_A           61 --EDATPALEGADVVLISAG   78 (312)
T ss_dssp             --SCCHHHHTTCSEEEECCS
T ss_pred             --CCcHHHhCCCCEEEEeCC
Confidence              235677899999987754

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=93.76  E-value=0.41  Score=42.38  Aligned_cols=81  Identities=17%  Similarity=0.215  Sum_probs=53.7

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC-CcEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS-GVNIV  113 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp-~v~v~  113 (328)
                      .| ++++|+|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++..+ ..++.
T Consensus         8 ~l-~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~   66 (281)
T 3svt_A            8 SF-QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNP-------------------DKLAGAVQELEALGANGGAIR   66 (281)
T ss_dssp             CC-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHTTCCSSCEEE
T ss_pred             Cc-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhCCCCceEE
Confidence            45 577888887 78999999999999998 688877432                   345556666665543 12566


Q ss_pred             EEecccCCcc--h-------hhhccCCEEEecC
Q 020259          114 PHFCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       114 ~~~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      ....++.+..  .       +.+.+.|++|.+.
T Consensus        67 ~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   99 (281)
T 3svt_A           67 YEPTDITNEDETARAVDAVTAWHGRLHGVVHCA   99 (281)
T ss_dssp             EEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            6666665421  1       1234678887763

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=93.76  E-value=0.31  Score=44.06  Aligned_cols=32  Identities=31%  Similarity=0.517  Sum_probs=27.4

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +.+|+|.| .|++|..+++.|+..|. +++++|.
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r   37 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGY-DVVIADN   37 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEec
Confidence            46899998 69999999999999997 6777763

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=93.75  E-value=0.24  Score=42.75  Aligned_cols=81  Identities=14%  Similarity=0.134  Sum_probs=50.9

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC-CCcEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-SGVNIV  113 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln-p~v~v~  113 (328)
                      .| ++++++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++.. +.+.+.
T Consensus        11 ~l-~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~   69 (247)
T 3i1j_A           11 LL-KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTE-------------------ASLAEVSDQIKSAGQPQPLII   69 (247)
T ss_dssp             TT-TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTSCCCEEE
T ss_pred             cC-CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCH-------------------HHHHHHHHHHHhcCCCCceEE
Confidence            36 577888888 68999999999999998 688877432                   35555666666654 344433


Q ss_pred             EEecccCCcc---------hhhhccCCEEEecC
Q 020259          114 PHFCRIEDKD---------ISFYNDFNIIVLGL  137 (328)
Q Consensus       114 ~~~~~~~~~~---------~~~~~~~dvVi~~~  137 (328)
                      ...-+..+..         .+.+.+.|++|.+.
T Consensus        70 ~~d~d~~~~~~~~~~~~~~~~~~g~id~lv~nA  102 (247)
T 3i1j_A           70 ALNLENATAQQYRELAARVEHEFGRLDGLLHNA  102 (247)
T ss_dssp             ECCTTTCCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EeccccCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            3322222211         12234678887763

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=93.75  E-value=0.24  Score=44.60  Aligned_cols=79  Identities=19%  Similarity=0.336  Sum_probs=53.1

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++.+|+|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.....  ++...
T Consensus        29 l-~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~--~~~~~   85 (301)
T 3tjr_A           29 F-DGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVD-------------------QPALEQAVNGLRGQGF--DAHGV   85 (301)
T ss_dssp             S-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             c-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--ceEEE
Confidence            5 467899998 68999999999999997 68887643                   2455666666666543  45555


Q ss_pred             ecccCCcc--hhh-------hccCCEEEecCC
Q 020259          116 FCRIEDKD--ISF-------YNDFNIIVLGLD  138 (328)
Q Consensus       116 ~~~~~~~~--~~~-------~~~~dvVi~~~d  138 (328)
                      ..++.+..  .++       +.+.|+||.+..
T Consensus        86 ~~Dv~d~~~v~~~~~~~~~~~g~id~lvnnAg  117 (301)
T 3tjr_A           86 VCDVRHLDEMVRLADEAFRLLGGVDVVFSNAG  117 (301)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred             EccCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            55655422  122       347898887743

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=93.72  E-value=0.16  Score=43.95  Aligned_cols=77  Identities=17%  Similarity=0.294  Sum_probs=50.3

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++.+|+|.| .|++|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++..+.  +.....
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~--~~~~~~   67 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINA-------------------DAANHVVDEIQQLGGQ--AFACRC   67 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTCC--EEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HHHHHHHHHHHHhCCc--eEEEEc
Confidence            467888888 68999999999999997 688876321                   2444555566655443  444455


Q ss_pred             ccCCcc--hhh-------hccCCEEEecC
Q 020259          118 RIEDKD--ISF-------YNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~~~-------~~~~dvVi~~~  137 (328)
                      ++.+..  ...       +.+.|+||.+.
T Consensus        68 D~~~~~~~~~~~~~~~~~~~~~d~vi~~A   96 (255)
T 1fmc_A           68 DITSEQELSALADFAISKLGKVDILVNNA   96 (255)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            554421  222       23789888764

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=93.72  E-value=0.23  Score=44.06  Aligned_cols=93  Identities=16%  Similarity=0.131  Sum_probs=56.7

Q ss_pred             HHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEE
Q 020259           34 RDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNI  112 (328)
Q Consensus        34 q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v  112 (328)
                      ...| ++++++|.| .||+|.++++.|+..|. ++.++|.+.-...  .     ........+.+...+.+.+..+  ++
T Consensus         5 m~~l-~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~--~~   73 (281)
T 3s55_A            5 MADF-EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDV--V-----GYPLATADDLAETVALVEKTGR--RC   73 (281)
T ss_dssp             -CTT-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTT--C-----SSCCCCHHHHHHHHHHHHHTTC--CE
T ss_pred             cccc-CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccc--c-----ccccccHHHHHHHHHHHHhcCC--eE
Confidence            3456 578889998 78999999999999998 6888886431110  0     0001122345555556665543  45


Q ss_pred             EEEecccCCcc--hh-------hhccCCEEEecC
Q 020259          113 VPHFCRIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       113 ~~~~~~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      .....++.+..  ..       .+.+.|++|.+.
T Consensus        74 ~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA  107 (281)
T 3s55_A           74 ISAKVDVKDRAALESFVAEAEDTLGGIDIAITNA  107 (281)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            55556665421  22       234789998864

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.72  E-value=0.21  Score=48.20  Aligned_cols=85  Identities=19%  Similarity=0.291  Sum_probs=60.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      ..+|+|+|.|-+|..+|+.|-. + .++++++.|.                   .|++.+++.    .|++.|  ...+.
T Consensus       235 ~~~v~I~GgG~ig~~lA~~L~~-~-~~v~iIE~d~-------------------~r~~~la~~----l~~~~V--i~GD~  287 (461)
T 4g65_A          235 YRRIMIVGGGNIGASLAKRLEQ-T-YSVKLIERNL-------------------QRAEKLSEE----LENTIV--FCGDA  287 (461)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT-T-SEEEEEESCH-------------------HHHHHHHHH----CTTSEE--EESCT
T ss_pred             ccEEEEEcchHHHHHHHHHhhh-c-CceEEEecCH-------------------HHHHHHHHH----CCCceE--Eeccc
Confidence            5789999999999999999853 4 4788887554                   455555554    355443  23333


Q ss_pred             CC---cchhhhccCCEEEecCCCHHHHHHHHHHHH
Q 020259          120 ED---KDISFYNDFNIIVLGLDSIEARSYINAVAC  151 (328)
Q Consensus       120 ~~---~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~  151 (328)
                      .+   ..++-+.++|++|.++++.+.-....-++.
T Consensus       288 td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk  322 (461)
T 4g65_A          288 ADQELLTEENIDQVDVFIALTNEDETNIMSAMLAK  322 (461)
T ss_dssp             TCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHH
T ss_pred             cchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHH
Confidence            33   235667899999999999888777766773

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=93.71  E-value=0.19  Score=45.67  Aligned_cols=80  Identities=16%  Similarity=0.271  Sum_probs=53.6

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++.+|+|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+....+..++.....
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~   66 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIR-------------------QDSIDKALATLEAEGSGPEVMGVQL   66 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHTCGGGEEEEEC
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCCeEEEEEC
Confidence            467899998 68999999999999998 68887643                   2355566666666665555666666


Q ss_pred             ccCCcc--hhh-------hccCCEEEecCC
Q 020259          118 RIEDKD--ISF-------YNDFNIIVLGLD  138 (328)
Q Consensus       118 ~~~~~~--~~~-------~~~~dvVi~~~d  138 (328)
                      ++.+..  ...       +.+.|+||.+..
T Consensus        67 Dl~~~~~v~~~~~~~~~~~g~id~lv~nAg   96 (319)
T 3ioy_A           67 DVASREGFKMAADEVEARFGPVSILCNNAG   96 (319)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            665421  111       235677777643

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=93.66  E-value=0.31  Score=43.26  Aligned_cols=79  Identities=20%  Similarity=0.289  Sum_probs=52.2

Q ss_pred             HHHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      .+ ++.+|+|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+.. ..++..
T Consensus        25 ~~-~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~-~~~~~~   82 (286)
T 1xu9_A           25 ML-QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSK-------------------ETLQKVVSHCLELG-AASAHY   82 (286)
T ss_dssp             GG-TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHT-CSEEEE
T ss_pred             hc-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHHhC-CCceEE
Confidence            46 5788999984 8999999999999997 688877432                   24445555555543 234555


Q ss_pred             EecccCCcc--hhh-------hccCCEEEec
Q 020259          115 HFCRIEDKD--ISF-------YNDFNIIVLG  136 (328)
Q Consensus       115 ~~~~~~~~~--~~~-------~~~~dvVi~~  136 (328)
                      ...++.+..  ..+       +.+.|+||.+
T Consensus        83 ~~~Dl~d~~~v~~~~~~~~~~~g~iD~li~n  113 (286)
T 1xu9_A           83 IAGTMEDMTFAEQFVAQAGKLMGGLDMLILN  113 (286)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHTSCSEEEEC
T ss_pred             EeCCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            666665421  122       2478888865

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=93.65  E-value=0.2  Score=45.48  Aligned_cols=94  Identities=16%  Similarity=0.201  Sum_probs=60.4

Q ss_pred             HHHHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCc
Q 020259           32 ELRDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV  110 (328)
Q Consensus        32 ~~q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v  110 (328)
                      .....| +++.++|.| .||+|.++++.|+..|. ++.++|.+.-.    .     ....-...+.+.+.+.+.+..+  
T Consensus        20 ~~m~~l-~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~--   86 (322)
T 3qlj_A           20 GSMGVV-DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGL----D-----GSPASGGSAAQSVVDEITAAGG--   86 (322)
T ss_dssp             --CCTT-TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCT----T-----SSBTCTTSHHHHHHHHHHHTTC--
T ss_pred             chhccc-CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccc----c-----ccccccHHHHHHHHHHHHhcCC--
Confidence            334457 577788887 68999999999999998 78888755311    1     1111224567777777777643  


Q ss_pred             EEEEEecccCCcc--hh-------hhccCCEEEecCC
Q 020259          111 NIVPHFCRIEDKD--IS-------FYNDFNIIVLGLD  138 (328)
Q Consensus       111 ~v~~~~~~~~~~~--~~-------~~~~~dvVi~~~d  138 (328)
                      ++..+..++.+..  ..       .+.+.|++|.+..
T Consensus        87 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg  123 (322)
T 3qlj_A           87 EAVADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAG  123 (322)
T ss_dssp             EEEEECCCTTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            5666666665532  22       2347899987643

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=93.62  E-value=0.26  Score=43.43  Aligned_cols=78  Identities=17%  Similarity=0.200  Sum_probs=51.4

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++.+|+|.| .|++|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++..+  ++...
T Consensus        29 l-~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~--~~~~~   85 (272)
T 1yb1_A           29 V-TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINK-------------------HGLEETAAKCKGLGA--KVHTF   85 (272)
T ss_dssp             C-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTC--CEEEE
T ss_pred             c-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCH-------------------HHHHHHHHHHHhcCC--eEEEE
Confidence            5 578899998 78999999999999997 688877432                   234445555555433  44555


Q ss_pred             ecccCCcc--hh-------hhccCCEEEecC
Q 020259          116 FCRIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      ..++.+..  ..       .+.+.|+||.+.
T Consensus        86 ~~Dl~~~~~v~~~~~~~~~~~g~iD~li~~A  116 (272)
T 1yb1_A           86 VVDCSNREDIYSSAKKVKAEIGDVSILVNNA  116 (272)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTCCCSEEEECC
T ss_pred             EeeCCCHHHHHHHHHHHHHHCCCCcEEEECC
Confidence            55555421  11       124688888764

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=93.60  E-value=0.22  Score=44.25  Aligned_cols=79  Identities=22%  Similarity=0.325  Sum_probs=51.0

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      .| ++.+++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+++.+.+...  ++..
T Consensus        29 ~l-~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~--~~~~   85 (276)
T 3r1i_A           29 DL-SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHS-------------------DALQVVADEIAGVGG--KALP   85 (276)
T ss_dssp             CC-TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSG-------------------GGGHHHHHHHHHTTC--CCEE
T ss_pred             CC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--eEEE
Confidence            36 577888888 68999999999999998 688887432                   234455566665543  3344


Q ss_pred             EecccCCcc--hhh-------hccCCEEEecC
Q 020259          115 HFCRIEDKD--ISF-------YNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~~~-------~~~~dvVi~~~  137 (328)
                      +..++.+..  .++       +.+.|++|.+.
T Consensus        86 ~~~Dl~d~~~v~~~~~~~~~~~g~iD~lvnnA  117 (276)
T 3r1i_A           86 IRCDVTQPDQVRGMLDQMTGELGGIDIAVCNA  117 (276)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            445554421  122       23678887763

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=93.59  E-value=0.099  Score=50.29  Aligned_cols=35  Identities=23%  Similarity=0.228  Sum_probs=30.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +..+|+|+|+|++|..+++.|+..|. +++++|.+.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~   36 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL   36 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCH
Confidence            35789999999999999999999996 699988653

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=93.59  E-value=0.11  Score=46.41  Aligned_cols=30  Identities=27%  Similarity=0.462  Sum_probs=27.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      .+|.|||+|.+|..+++.|...|. +++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~   33 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT   33 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTC-EEEECC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc
Confidence            479999999999999999999997 788887

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=93.56  E-value=0.49  Score=41.30  Aligned_cols=77  Identities=17%  Similarity=0.333  Sum_probs=50.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++.+|+|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..  .++.....
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~--~~~~~~~~   65 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQ-------------------KELNDCLTQWRSKG--FKVEASVC   65 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTT--CEEEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcC--CcEEEEEc
Confidence            467888888 68999999999999997 688876432                   23444455555443  34555555


Q ss_pred             ccCCcc--hhh-------h-ccCCEEEecC
Q 020259          118 RIEDKD--ISF-------Y-NDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~~~-------~-~~~dvVi~~~  137 (328)
                      ++.+..  ...       + .+.|+||.+.
T Consensus        66 D~~~~~~~~~~~~~~~~~~~g~id~lv~~A   95 (260)
T 2ae2_A           66 DLSSRSERQELMNTVANHFHGKLNILVNNA   95 (260)
T ss_dssp             CTTCHHHHHHHHHHHHHHTTTCCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCCEEEECC
Confidence            655421  112       2 4678888764

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=93.56  E-value=0.3  Score=43.95  Aligned_cols=75  Identities=15%  Similarity=0.130  Sum_probs=45.1

Q ss_pred             cCCcEEEEcCChHHHH-HHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           39 EYARILVVGAGGLGCE-LLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        39 ~~~~VliiG~gglG~e-vaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      +..+|.|||+|.+|.. .++.|.. .|+.-+.++|.+.                   .|++.+++...     +.     
T Consensus         5 ~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~-------------------~~~~~~a~~~~-----~~-----   55 (308)
T 3uuw_A            5 KNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNK-------------------VKREKICSDYR-----IM-----   55 (308)
T ss_dssp             CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCH-------------------HHHHHHHHHHT-----CC-----
T ss_pred             ccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCH-------------------HHHHHHHHHcC-----CC-----
Confidence            4678999999999996 8888876 4543333666432                   34544444321     11     


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARS  144 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~  144 (328)
                       . ....++.+++.|+|+.|+.+.....
T Consensus        56 -~-~~~~~~ll~~~D~V~i~tp~~~h~~   81 (308)
T 3uuw_A           56 -P-FDSIESLAKKCDCIFLHSSTETHYE   81 (308)
T ss_dssp             -B-CSCHHHHHTTCSEEEECCCGGGHHH
T ss_pred             -C-cCCHHHHHhcCCEEEEeCCcHhHHH
Confidence             0 1223455567888888877654433

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=93.54  E-value=0.18  Score=44.34  Aligned_cols=82  Identities=16%  Similarity=0.205  Sum_probs=49.6

Q ss_pred             HHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEE
Q 020259           34 RDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNI  112 (328)
Q Consensus        34 q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v  112 (328)
                      +..+ ++.+|+|.| .||+|.++++.|+..|. ++.+.+..                  ...+.+...+.+.+..+.  +
T Consensus        21 ~~~l-~~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r------------------~~~~~~~~~~~l~~~~~~--~   78 (267)
T 4iiu_A           21 QSNA-MSRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHR------------------DAAGAQETLNAIVANGGN--G   78 (267)
T ss_dssp             -----CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESS------------------CHHHHHHHHHHHHHTTCC--E
T ss_pred             cccc-CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC------------------chHHHHHHHHHHHhcCCc--e
Confidence            4557 677888887 68999999999999998 45454321                  123455566666665544  4


Q ss_pred             EEEecccCCcc--hh-------hhccCCEEEecC
Q 020259          113 VPHFCRIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       113 ~~~~~~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      .....++.+..  .+       .+...|+||.+.
T Consensus        79 ~~~~~Dl~~~~~~~~~~~~~~~~~g~id~li~nA  112 (267)
T 4iiu_A           79 RLLSFDVANREQCREVLEHEIAQHGAWYGVVSNA  112 (267)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECC
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhCCccEEEECC
Confidence            44555554421  12       234788888764

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=93.54  E-value=0.42  Score=43.73  Aligned_cols=34  Identities=29%  Similarity=0.338  Sum_probs=28.8

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHH--hCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLAL--SGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l--~Gvg~itlvD~d   73 (328)
                      +..+|+|.| .|.+|+.+++.|..  .|. +++++|..
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~   45 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKF   45 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECC
Confidence            467899997 69999999999999  787 78888753

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=93.50  E-value=0.18  Score=44.51  Aligned_cols=78  Identities=17%  Similarity=0.189  Sum_probs=51.0

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++++|+|.| .||+|.++++.|+..|. ++.+++.+.                  ..+.+.+.+.+++...  ++.....
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~--~~~~~~~   86 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSN------------------AEVADALKNELEEKGY--KAAVIKF   86 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTC--CEEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCC------------------HHHHHHHHHHHHhcCC--ceEEEEC
Confidence            467788887 68999999999999998 677776421                  1345556666666543  4445555


Q ss_pred             ccCCcc--hh-------hhccCCEEEecC
Q 020259          118 RIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      ++.+..  ..       .+.+.|+||.+.
T Consensus        87 D~~~~~~v~~~~~~~~~~~g~id~li~nA  115 (271)
T 4iin_A           87 DAASESDFIEAIQTIVQSDGGLSYLVNNA  115 (271)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            554421  11       224788888764

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=93.50  E-value=0.36  Score=42.92  Aligned_cols=79  Identities=22%  Similarity=0.320  Sum_probs=54.3

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++.+|+|.| .||+|.++++.|+..|. ++.+++.+                   ..|.+.+.+.+++.++ .++..+..
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~-~~~~~~~~   69 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRD-------------------VTKGHEAVEKLKNSNH-ENVVFHQL   69 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTTC-CSEEEEEC
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCC-CceEEEEc
Confidence            467788888 58999999999999998 78887643                   2456666677766543 35666666


Q ss_pred             ccCCc-c--h-------hhhccCCEEEecCC
Q 020259          118 RIEDK-D--I-------SFYNDFNIIVLGLD  138 (328)
Q Consensus       118 ~~~~~-~--~-------~~~~~~dvVi~~~d  138 (328)
                      ++.+. .  .       +.+.+.|+||.+..
T Consensus        70 Dl~~~~~~v~~~~~~~~~~~g~iD~lv~nAg  100 (311)
T 3o26_A           70 DVTDPIATMSSLADFIKTHFGKLDILVNNAG  100 (311)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             cCCCcHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence            66553 2  1       12347899988754

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=93.49  E-value=0.31  Score=42.54  Aligned_cols=76  Identities=18%  Similarity=0.296  Sum_probs=49.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++.+++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+++.+++..+  ++..+..
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~--~~~~~~~   63 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNG-------------------EKLAPLVAEIEAAGG--RIVARSL   63 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSG-------------------GGGHHHHHHHHHTTC--EEEEEEC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--eEEEEEC
Confidence            467788888 67999999999999998 688887432                   244455555655533  4555555


Q ss_pred             ccCCcc--hhhh------ccCCEEEec
Q 020259          118 RIEDKD--ISFY------NDFNIIVLG  136 (328)
Q Consensus       118 ~~~~~~--~~~~------~~~dvVi~~  136 (328)
                      ++.+..  ..++      .+.|++|.+
T Consensus        64 Dv~~~~~v~~~~~~~~~~g~id~lv~n   90 (252)
T 3h7a_A           64 DARNEDEVTAFLNAADAHAPLEVTIFN   90 (252)
T ss_dssp             CTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred             cCCCHHHHHHHHHHHHhhCCceEEEEC
Confidence            554421  2222      256777665

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=93.44  E-value=0.45  Score=42.33  Aligned_cols=30  Identities=37%  Similarity=0.665  Sum_probs=26.4

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           42 RILVVGA-GGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +|+|.|+ |.+|..+++.|...|. +++++|.
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   32 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKLVELGY-EVVVVDN   32 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             EEEEECCCChHHHHHHHHHHhCCC-EEEEEeC
Confidence            6999996 9999999999999997 7887764

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=93.44  E-value=0.35  Score=41.76  Aligned_cols=79  Identities=10%  Similarity=0.180  Sum_probs=50.9

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++.+|+|.| .|++|.++++.|+..|. ++.++|.+.                  ..+.+.+.+.++...  .++..+
T Consensus         5 l-~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~   62 (258)
T 3afn_B            5 L-KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKA------------------PANIDETIASMRADG--GDAAFF   62 (258)
T ss_dssp             G-TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------CTTHHHHHHHHHHTT--CEEEEE
T ss_pred             C-CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCc------------------hhhHHHHHHHHHhcC--CceEEE
Confidence            5 467788887 68999999999999997 688876431                  123444455555543  345556


Q ss_pred             ecccCCcc--hhhh-------ccCCEEEecC
Q 020259          116 FCRIEDKD--ISFY-------NDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~~~~-------~~~dvVi~~~  137 (328)
                      ..++.+..  ...+       .+.|+||.+.
T Consensus        63 ~~D~~~~~~~~~~~~~~~~~~g~id~vi~~A   93 (258)
T 3afn_B           63 AADLATSEACQQLVDEFVAKFGGIDVLINNA   93 (258)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSSCSEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            56665422  2222       3789888764

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=93.43  E-value=0.37  Score=42.84  Aligned_cols=81  Identities=14%  Similarity=0.231  Sum_probs=52.7

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      .+ +++.++|.| .||+|.++++.|+..|. ++.++|...                  ..+.+.+++.+....+  ++..
T Consensus        26 ~~-~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~   83 (280)
T 4da9_A           26 QK-ARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGD------------------AEGVAPVIAELSGLGA--RVIF   83 (280)
T ss_dssp             CC-CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCC------------------HHHHHHHHHHHHHTTC--CEEE
T ss_pred             cc-CCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCC------------------HHHHHHHHHHHHhcCC--cEEE
Confidence            35 467788887 68999999999999998 688876311                  1345556666666544  4555


Q ss_pred             EecccCCcc--hhh-------hccCCEEEecCC
Q 020259          115 HFCRIEDKD--ISF-------YNDFNIIVLGLD  138 (328)
Q Consensus       115 ~~~~~~~~~--~~~-------~~~~dvVi~~~d  138 (328)
                      +..++.+..  ..+       +.+.|++|.+..
T Consensus        84 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  116 (280)
T 4da9_A           84 LRADLADLSSHQATVDAVVAEFGRIDCLVNNAG  116 (280)
T ss_dssp             EECCTTSGGGHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             EEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            555665422  222       347888887643

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.40  E-value=0.29  Score=43.01  Aligned_cols=78  Identities=12%  Similarity=0.212  Sum_probs=52.5

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++++++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++.. ..++..+..
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~-~~~~~~~~~   67 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRST-------------------ADIDACVADLDQLG-SGKVIGVQT   67 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHTTS-SSCEEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhhC-CCcEEEEEc
Confidence            467788887 78999999999999998 788887432                   34556666666543 235566666


Q ss_pred             ccCCcc--hh-------hhccCCEEEecC
Q 020259          118 RIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      ++.+..  ..       .+.+.|++|.+.
T Consensus        68 Dv~~~~~v~~~~~~~~~~~g~id~lvnnA   96 (262)
T 3pk0_A           68 DVSDRAQCDALAGRAVEEFGGIDVVCANA   96 (262)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            665422  11       234788888764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=93.40  E-value=0.34  Score=47.62  Aligned_cols=80  Identities=15%  Similarity=0.164  Sum_probs=55.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      ..+|+|+|+|.+|..+++.|...|. .++++|.|.-....+.                               .....+.
T Consensus       348 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~-------------------------------~~i~gD~  395 (565)
T 4gx0_A          348 DELIFIIGHGRIGCAAAAFLDRKPV-PFILIDRQESPVCNDH-------------------------------VVVYGDA  395 (565)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCCSSCCSS-------------------------------CEEESCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-CEEEEECChHHHhhcC-------------------------------CEEEeCC
Confidence            3789999999999999999999998 7999997764322211                               1122222


Q ss_pred             CC---cchhhhccCCEEEecCCCHHHHHHHHHHHH
Q 020259          120 ED---KDISFYNDFNIIVLGLDSIEARSYINAVAC  151 (328)
Q Consensus       120 ~~---~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~  151 (328)
                      .+   ....-++++|.+|.++++.+....+-..++
T Consensus       396 t~~~~L~~agi~~ad~vi~~~~~d~~ni~~~~~ak  430 (565)
T 4gx0_A          396 TVGQTLRQAGIDRASGIIVTTNDDSTNIFLTLACR  430 (565)
T ss_dssp             SSSTHHHHHTTTSCSEEEECCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHhcCccccCEEEEECCCchHHHHHHHHHH
Confidence            22   123446789999999998776666655663

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=93.39  E-value=0.38  Score=42.15  Aligned_cols=79  Identities=19%  Similarity=0.312  Sum_probs=49.7

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++.+|+|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..+..++.....
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~~~   65 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNL-------------------EAGVQCKAALHEQFEPQKTLFIQC   65 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHTTTSCGGGEEEEEC
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHhhcCCCceEEEec
Confidence            356788888 68999999999999997 688876332                   233334444444333334555555


Q ss_pred             ccCCcc--hh-------hhccCCEEEecC
Q 020259          118 RIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      ++.+..  ..       .+.+.|+||.+.
T Consensus        66 D~~~~~~v~~~~~~~~~~~g~id~lv~~A   94 (267)
T 2gdz_A           66 DVADQQQLRDTFRKVVDHFGRLDILVNNA   94 (267)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            655421  11       234578888774

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=93.38  E-value=0.2  Score=44.35  Aligned_cols=77  Identities=16%  Similarity=0.321  Sum_probs=51.8

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++++++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+++.+++..  .++.....
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~--~~~~~~~~   60 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQ-------------------ARIEAIATEIRDAG--GTALAQVL   60 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHTT--CEEEEEEC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHhcC--CcEEEEEc
Confidence            356788887 68999999999999998 688877432                   35666666776653  34555555


Q ss_pred             ccCCcc--h-------hhhccCCEEEecC
Q 020259          118 RIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      ++.+..  .       +.+.+.|++|.+.
T Consensus        61 Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA   89 (264)
T 3tfo_A           61 DVTDRHSVAAFAQAAVDTWGRIDVLVNNA   89 (264)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            665421  1       2234788888764

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=93.38  E-value=0.37  Score=43.02  Aligned_cols=82  Identities=21%  Similarity=0.364  Sum_probs=52.8

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC---CCcE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV---SGVN  111 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln---p~v~  111 (328)
                      +| ++.+|+|.| .|++|.++++.|+..|. +++++|.+.                   .+.+.+.+.+++..   ...+
T Consensus        15 ~l-~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~   73 (303)
T 1yxm_A           15 LL-QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKL-------------------ERLKSAADELQANLPPTKQAR   73 (303)
T ss_dssp             TT-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTSCTTCCCC
T ss_pred             CC-CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhhccccCCcc
Confidence            46 578899998 78999999999999997 688876432                   24444555555421   1334


Q ss_pred             EEEEecccCCcc--hhh-------hccCCEEEecCC
Q 020259          112 IVPHFCRIEDKD--ISF-------YNDFNIIVLGLD  138 (328)
Q Consensus       112 v~~~~~~~~~~~--~~~-------~~~~dvVi~~~d  138 (328)
                      +..+..++.+..  ...       +.+.|+||.+..
T Consensus        74 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag  109 (303)
T 1yxm_A           74 VIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGG  109 (303)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEEEecCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            556666665421  122       235898887643

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.38  E-value=0.3  Score=42.88  Aligned_cols=79  Identities=19%  Similarity=0.224  Sum_probs=52.5

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      .| ++++++|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.+...  ++..
T Consensus         8 ~l-~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~   64 (264)
T 3ucx_A            8 LL-TDKVVVISGVGPALGTTLARRCAEQGA-DLVLAART-------------------VERLEDVAKQVTDTGR--RALS   64 (264)
T ss_dssp             TT-TTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEE
T ss_pred             Cc-CCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCC-------------------HHHHHHHHHHHHhcCC--cEEE
Confidence            35 577888888 67999999999999998 68887743                   2355666666666533  4555


Q ss_pred             EecccCCcc--hh-------hhccCCEEEecC
Q 020259          115 HFCRIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      +..++.+..  ..       .+.+.|++|.+.
T Consensus        65 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   96 (264)
T 3ucx_A           65 VGTDITDDAQVAHLVDETMKAYGRVDVVINNA   96 (264)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            555555421  11       234678887764

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=93.37  E-value=0.26  Score=45.58  Aligned_cols=33  Identities=21%  Similarity=0.334  Sum_probs=28.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|.|||+|.+|..+++.|...|. +++++|.+
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~   40 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANH-SVFGYNRS   40 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTC-CEEEECSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4679999999999999999999995 78888743

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=93.35  E-value=0.15  Score=44.71  Aligned_cols=79  Identities=16%  Similarity=0.276  Sum_probs=50.2

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      .| ++++++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..+  ++..
T Consensus        11 ~l-~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~--~~~~   67 (260)
T 2zat_A           11 PL-ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQ-------------------ENVDRTVATLQGEGL--SVTG   67 (260)
T ss_dssp             TT-TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTC--CEEE
T ss_pred             CC-CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--ceEE
Confidence            36 567788887 78999999999999997 788876431                   234444555554433  3444


Q ss_pred             EecccCCcc--hh-------hhccCCEEEecC
Q 020259          115 HFCRIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      ...++.+..  ..       .+.+.|+||.+.
T Consensus        68 ~~~D~~~~~~~~~~~~~~~~~~g~iD~lv~~A   99 (260)
T 2zat_A           68 TVCHVGKAEDRERLVAMAVNLHGGVDILVSNA   99 (260)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            555554321  11       234788888763

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=93.35  E-value=0.18  Score=46.19  Aligned_cols=81  Identities=14%  Similarity=0.088  Sum_probs=52.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      ..+|+|+|+|.+|..+++.|...|.  ++++|.|.                   .+++     +++  ..+.  ....+.
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~--v~vid~~~-------------------~~~~-----~~~--~~~~--~i~gd~  164 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV--FVLAEDEN-------------------VRKK-----VLR--SGAN--FVHGDP  164 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE--EEEESCGG-------------------GHHH-----HHH--TTCE--EEESCT
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc--EEEEeCCh-------------------hhhh-----HHh--CCcE--EEEeCC
Confidence            4689999999999999999999887  88887543                   1232     222  2333  333333


Q ss_pred             CCcc---hhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          120 EDKD---ISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       120 ~~~~---~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .+..   ..-++++|.|+.++++.+....+-..+
T Consensus       165 ~~~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~a  198 (336)
T 1lnq_A          165 TRVSDLEKANVRGARAVIVDLESDSETIHCILGI  198 (336)
T ss_dssp             TSHHHHHHTCSTTEEEEEECCSSHHHHHHHHHHH
T ss_pred             CCHHHHHhcChhhccEEEEcCCccHHHHHHHHHH
Confidence            3221   223578899999988766555554555

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=93.34  E-value=0.33  Score=42.57  Aligned_cols=78  Identities=10%  Similarity=0.032  Sum_probs=50.6

Q ss_pred             HHcCCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEE
Q 020259           37 LQEYARILVVGAG---GLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIV  113 (328)
Q Consensus        37 Lr~~~~VliiG~g---glG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~  113 (328)
                      | +++.++|-|++   |+|.++|+.|+..|. ++.+.|.+.                   .+.+.+.+.+.+.+. .++.
T Consensus         4 l-~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~-------------------~~~~~~~~~~~~~~~-~~~~   61 (256)
T 4fs3_A            4 L-ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKE-------------------RSRKELEKLLEQLNQ-PEAH   61 (256)
T ss_dssp             C-TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSG-------------------GGHHHHHHHHGGGTC-SSCE
T ss_pred             C-CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHhcCC-CcEE
Confidence            5 57888888974   899999999999998 788887432                   234445555665542 2344


Q ss_pred             EEecccCCcc---------hhhhccCCEEEec
Q 020259          114 PHFCRIEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       114 ~~~~~~~~~~---------~~~~~~~dvVi~~  136 (328)
                      .+..++.+..         .+.+.+.|++|.+
T Consensus        62 ~~~~Dv~~~~~v~~~~~~~~~~~G~iD~lvnn   93 (256)
T 4fs3_A           62 LYQIDVQSDEEVINGFEQIGKDVGNIDGVYHS   93 (256)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHCCCSEEEEC
T ss_pred             EEEccCCCHHHHHHHHHHHHHHhCCCCEEEec
Confidence            4445554321         2334567877765

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=93.32  E-value=0.49  Score=40.45  Aligned_cols=77  Identities=19%  Similarity=0.377  Sum_probs=50.4

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      .++++|.| .||+|.++++.|+..|. ++.+++.+.                   .+.+.+.+.+.+.. ..++.....+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~-~~~~~~~~~D   60 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSV-------------------DRLEKIAHELMQEQ-GVEVFYHHLD   60 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHH-CCCEEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhhc-CCeEEEEEec
Confidence            45688888 68999999999999997 588876432                   35555566655322 3455666666


Q ss_pred             cCCcc--h-------hhhccCCEEEecC
Q 020259          119 IEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       119 ~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      +.+..  .       +.+.+.|++|.+.
T Consensus        61 ~~~~~~v~~~~~~~~~~~g~id~li~~A   88 (235)
T 3l77_A           61 VSKAESVEEFSKKVLERFGDVDVVVANA   88 (235)
T ss_dssp             TTCHHHHHHHCC-HHHHHSSCSEEEECC
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            65421  1       2234789988874

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=93.32  E-value=0.07  Score=51.13  Aligned_cols=35  Identities=26%  Similarity=0.492  Sum_probs=32.6

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCC--CeEEEEe
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGF--KNLEVID   71 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gv--g~itlvD   71 (328)
                      .| ++.+|+|+|+||.|..+++.|...|+  ++|+++|
T Consensus       183 ~l-~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          183 KI-SEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             CT-TTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             Cc-cCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            35 57899999999999999999999999  8999998

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=93.31  E-value=0.29  Score=43.09  Aligned_cols=37  Identities=22%  Similarity=0.317  Sum_probs=27.7

Q ss_pred             HHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           34 RDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        34 q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +.+| ++.+++|.| .||+|.++++.|+..|. ++.++|.
T Consensus         6 ~~~~-~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r   43 (276)
T 1mxh_A            6 HEAS-ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYR   43 (276)
T ss_dssp             ------CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             hhcc-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4557 577788887 78999999999999997 7888774

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=93.30  E-value=0.63  Score=44.60  Aligned_cols=42  Identities=21%  Similarity=0.261  Sum_probs=34.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLN   81 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~   81 (328)
                      .+-+|.+||+|.+|..+|.+|+..|. +++++|-+.-....++
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~-~V~~~D~~~~kv~~l~   48 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGH-EVVCVDKDARKIELLH   48 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHT
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHh
Confidence            46789999999999999999999997 8999996654433333

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=93.23  E-value=0.18  Score=43.91  Aligned_cols=80  Identities=14%  Similarity=0.221  Sum_probs=51.3

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      .| ++.+|+|.| .|++|.++++.|+..|. ++.+++..                  ...+.+.+.+.+.+..+  ++..
T Consensus         4 ~l-~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~------------------~~~~~~~~~~~l~~~~~--~~~~   61 (261)
T 1gee_A            4 DL-EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRS------------------KEDEANSVLEEIKKVGG--EAIA   61 (261)
T ss_dssp             GG-TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS------------------CHHHHHHHHHHHHHTTC--EEEE
T ss_pred             CC-CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCC------------------ChHHHHHHHHHHHhcCC--ceEE
Confidence            35 577888887 78999999999999997 68777641                  01244455555655433  4555


Q ss_pred             EecccCCcc--hhh-------hccCCEEEecC
Q 020259          115 HFCRIEDKD--ISF-------YNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~~~-------~~~~dvVi~~~  137 (328)
                      ...++.+..  .+.       +.+.|+||.+.
T Consensus        62 ~~~D~~~~~~~~~~~~~~~~~~g~id~li~~A   93 (261)
T 1gee_A           62 VKGDVTVESDVINLVQSAIKEFGKLDVMINNA   93 (261)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            555555421  122       23788888763

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=93.20  E-value=0.045  Score=52.87  Aligned_cols=33  Identities=15%  Similarity=0.374  Sum_probs=30.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|.+|+.+|.+|+.+|. .++++|.+.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~   87 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNE   87 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcH
Confidence            689999999999999999999998 899998554

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=93.19  E-value=0.65  Score=42.80  Aligned_cols=37  Identities=35%  Similarity=0.528  Sum_probs=30.2

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++ +..+|+|.| .|.+|..+++.|...|..+++++|..
T Consensus        29 ~~-~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   66 (377)
T 2q1s_A           29 KL-ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNL   66 (377)
T ss_dssp             GG-TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCC
T ss_pred             Hh-CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECC
Confidence            35 567899999 59999999999999994478887643

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=93.17  E-value=0.31  Score=43.27  Aligned_cols=84  Identities=15%  Similarity=0.217  Sum_probs=52.6

Q ss_pred             HHHHHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCC
Q 020259           31 TELRDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG  109 (328)
Q Consensus        31 ~~~q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~  109 (328)
                      ......| ++.+++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..+ 
T Consensus        25 ~~~~~~l-~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~-   82 (275)
T 4imr_A           25 LETIFGL-RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKP-------------------GSTAAVQQRIIASGG-   82 (275)
T ss_dssp             HHHHHCC-TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESST-------------------TTTHHHHHHHHHTTC-
T ss_pred             ccccCCC-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCH-------------------HHHHHHHHHHHhcCC-
Confidence            3444456 577778887 68999999999999998 788877421                   233445555555433 


Q ss_pred             cEEEEEecccCCcc--hhhh------ccCCEEEecC
Q 020259          110 VNIVPHFCRIEDKD--ISFY------NDFNIIVLGL  137 (328)
Q Consensus       110 v~v~~~~~~~~~~~--~~~~------~~~dvVi~~~  137 (328)
                       ++.....++.+..  ..++      .+.|++|.+.
T Consensus        83 -~~~~~~~Dv~~~~~~~~~~~~~~~~g~iD~lvnnA  117 (275)
T 4imr_A           83 -TAQELAGDLSEAGAGTDLIERAEAIAPVDILVINA  117 (275)
T ss_dssp             -CEEEEECCTTSTTHHHHHHHHHHHHSCCCEEEECC
T ss_pred             -eEEEEEecCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence             4455555554421  2222      3678887764

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=93.11  E-value=0.11  Score=42.69  Aligned_cols=33  Identities=33%  Similarity=0.415  Sum_probs=29.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|+|||.|..|.++|..|...|. +++++|...
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~-~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGL-KVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            369999999999999999999998 799999764

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=93.11  E-value=0.29  Score=43.30  Aligned_cols=78  Identities=18%  Similarity=0.261  Sum_probs=51.2

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++++++|.| .||+|.++++.|+..|. ++.++|...                  ..+.+.+.+.+++..+  ++.....
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~------------------~~~~~~~~~~l~~~~~--~~~~~~~   88 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNA------------------AERAQAVVSEIEQAGG--RAVAIRA   88 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTC--CEEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCC------------------HHHHHHHHHHHHhcCC--cEEEEEC
Confidence            467788888 68999999999999998 677765321                  1355666666766544  4445555


Q ss_pred             ccCCcc--hh-------hhccCCEEEecC
Q 020259          118 RIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      ++.+..  ..       .+.+.|++|.+.
T Consensus        89 Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA  117 (271)
T 3v2g_A           89 DNRDAEAIEQAIRETVEALGGLDILVNSA  117 (271)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            555421  12       234788888764

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=93.07  E-value=0.2  Score=43.41  Aligned_cols=77  Identities=21%  Similarity=0.181  Sum_probs=50.7

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++++++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++.++  ++.....
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~--~~~~~~~   61 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQ-------------------ASAEKFENSMKEKGF--KARGLVL   61 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHTTC--CEEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--ceEEEEe
Confidence            467788887 68999999999999997 687776432                   355566666666544  4445555


Q ss_pred             ccCCcc--hh-------hhccCCEEEecC
Q 020259          118 RIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      ++.+..  ..       .+.+.|+||.+.
T Consensus        62 D~~~~~~~~~~~~~~~~~~~~id~li~~A   90 (247)
T 3lyl_A           62 NISDIESIQNFFAEIKAENLAIDILVNNA   90 (247)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCCSEEEECC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            554421  11       123578888764

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=93.06  E-value=0.37  Score=42.04  Aligned_cols=63  Identities=16%  Similarity=0.174  Sum_probs=46.3

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHH---hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           39 EYARILVVG-AGGLGCELLKDLAL---SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l---~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      ++++++|.| .||+|.++++.|+.   .|. ++.++|.+.                   .+.+.+.+.+.+.+|..++..
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~   64 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSE-------------------SMLRQLKEELGAQQPDLKVVL   64 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCH-------------------HHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCH-------------------HHHHHHHHHHHhhCCCCeEEE
Confidence            456677777 78999999999998   897 788876332                   355666677777666667777


Q ss_pred             EecccCC
Q 020259          115 HFCRIED  121 (328)
Q Consensus       115 ~~~~~~~  121 (328)
                      ...++.+
T Consensus        65 ~~~Dv~~   71 (259)
T 1oaa_A           65 AAADLGT   71 (259)
T ss_dssp             EECCTTS
T ss_pred             EecCCCC
Confidence            7777765

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=93.05  E-value=0.59  Score=43.20  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=28.4

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|+|.|+ |.+|+.+++.|...|. +++++|.+
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   62 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGH-YVIASDWK   62 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECC
Confidence            467999996 9999999999999996 78888754

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=93.02  E-value=0.17  Score=44.40  Aligned_cols=79  Identities=14%  Similarity=0.266  Sum_probs=49.9

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      +| ++++++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++...  ++..
T Consensus         3 ~l-~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~--~~~~   59 (257)
T 3imf_A            3 AM-KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTK-------------------EKLEEAKLEIEQFPG--QILT   59 (257)
T ss_dssp             TT-TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHCCSTT--CEEE
T ss_pred             CC-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--cEEE
Confidence            35 567788887 68999999999999997 688877432                   344445555544332  4445


Q ss_pred             EecccCCcc--h-------hhhccCCEEEecC
Q 020259          115 HFCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      +..++.+..  .       +.+.+.|++|.+.
T Consensus        60 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   91 (257)
T 3imf_A           60 VQMDVRNTDDIQKMIEQIDEKFGRIDILINNA   91 (257)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            555554421  1       1234678887754

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=93.00  E-value=0.36  Score=45.26  Aligned_cols=30  Identities=23%  Similarity=0.324  Sum_probs=26.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHH-hCCCeEEEEe
Q 020259           41 ARILVVGAGGLGCELLKDLAL-SGFKNLEVID   71 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l-~Gvg~itlvD   71 (328)
                      .+|.|||+|.+|+.++..|+. +|. .++++|
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~-~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGV-EVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTE-EEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCC-EEEEEe
Confidence            379999999999999999998 586 788887

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.97  E-value=0.42  Score=46.23  Aligned_cols=35  Identities=23%  Similarity=0.358  Sum_probs=31.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+.+|.|||+|.+|..+|..|+..|. +++++|.+.
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~~   41 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVDQ   41 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            46789999999999999999999997 799998764

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=92.95  E-value=0.4  Score=42.38  Aligned_cols=92  Identities=20%  Similarity=0.185  Sum_probs=57.6

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      +| +++.++|.| .+|+|.++++.|+..|. ++.++|...-.+..+.+.      .-...+.+.+.+.+...++  ++..
T Consensus         8 ~l-~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~   77 (277)
T 3tsc_A            8 KL-EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYD------PASPDDLSETVRLVEAANR--RIVA   77 (277)
T ss_dssp             TT-TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSC------CCCHHHHHHHHHHHHHTTC--CEEE
T ss_pred             cc-CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEecccccccccccc------ccCHHHHHHHHHHHHhcCC--eEEE
Confidence            46 577888888 68999999999999998 788888543222211111      1123455666666666554  4555


Q ss_pred             EecccCCcc--h-------hhhccCCEEEecC
Q 020259          115 HFCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      ...++.+..  .       +.+.+.|++|.+.
T Consensus        78 ~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnA  109 (277)
T 3tsc_A           78 AVVDTRDFDRLRKVVDDGVAALGRLDIIVANA  109 (277)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            556665421  1       2235689998864

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=92.95  E-value=0.43  Score=41.39  Aligned_cols=78  Identities=15%  Similarity=0.192  Sum_probs=51.5

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++++++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..  .++...
T Consensus         5 l-~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~--~~~~~~   61 (247)
T 2jah_A            5 L-QGKVALITGASSGIGEATARALAAEGA-AVAIAARRV-------------------EKLRALGDELTAAG--AKVHVL   61 (247)
T ss_dssp             T-TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTT--CCEEEE
T ss_pred             C-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHhcC--CcEEEE
Confidence            5 467888888 78999999999999997 688876431                   34455556665543  345555


Q ss_pred             ecccCCcc--h-------hhhccCCEEEecC
Q 020259          116 FCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      ..++.+..  .       +.+.+.|++|.+.
T Consensus        62 ~~Dv~~~~~~~~~~~~~~~~~g~id~lv~nA   92 (247)
T 2jah_A           62 ELDVADRQGVDAAVASTVEALGGLDILVNNA   92 (247)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            55655421  1       1234788888763

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=92.93  E-value=0.23  Score=43.21  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=27.4

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHH-hCCCeEEEEeCC
Q 020259           40 YARILVVG-AGGLGCELLKDLAL-SGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l-~Gvg~itlvD~d   73 (328)
                      ..+|+|.| .|++|.++++.|+. .|. ++.+++.+
T Consensus         4 ~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~   38 (276)
T 1wma_A            4 IHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARD   38 (276)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            56788887 78999999999999 897 78887643

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=92.92  E-value=0.38  Score=42.35  Aligned_cols=79  Identities=19%  Similarity=0.388  Sum_probs=51.7

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++++|+|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+.. ..++..+
T Consensus        18 l-~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~-~~~~~~~   75 (266)
T 4egf_A           18 L-DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDV-------------------SELDAARRALGEQF-GTDVHTV   75 (266)
T ss_dssp             C-TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHH-CCCEEEE
T ss_pred             C-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhc-CCcEEEE
Confidence            5 467788887 68999999999999998 688877432                   34555556665521 2345555


Q ss_pred             ecccCCcc--h-------hhhccCCEEEecC
Q 020259          116 FCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      ..++.+..  .       +.+.+.|++|.+.
T Consensus        76 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA  106 (266)
T 4egf_A           76 AIDLAEPDAPAELARRAAEAFGGLDVLVNNA  106 (266)
T ss_dssp             ECCTTSTTHHHHHHHHHHHHHTSCSEEEEEC
T ss_pred             EecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            56665432  1       2234788887763

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=92.92  E-value=0.42  Score=42.29  Aligned_cols=80  Identities=14%  Similarity=0.257  Sum_probs=51.9

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      .| ++++++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+...+.+.+.. ..++..
T Consensus        24 ~l-~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~-~~~~~~   81 (277)
T 4fc7_A           24 LL-RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSL-------------------PRVLTAARKLAGAT-GRRCLP   81 (277)
T ss_dssp             TT-TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCH-------------------HHHHHHHHHHHHHH-SSCEEE
T ss_pred             cc-CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhc-CCcEEE
Confidence            46 578889998 67999999999999998 788887432                   34444445554322 234555


Q ss_pred             EecccCCcc--h-------hhhccCCEEEecC
Q 020259          115 HFCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      +..++.+..  .       +.+.+.|++|.+.
T Consensus        82 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA  113 (277)
T 4fc7_A           82 LSMDVRAPPAVMAAVDQALKEFGRIDILINCA  113 (277)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            656665421  1       1234678888764

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=92.91  E-value=0.49  Score=42.66  Aligned_cols=32  Identities=25%  Similarity=0.438  Sum_probs=27.6

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|+|.| .|.+|+.+++.|...|. +++++|.+
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   46 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGH-DLVLIHRP   46 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecC
Confidence            3799999 59999999999999995 78888754

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=92.91  E-value=1.1  Score=39.60  Aligned_cols=79  Identities=18%  Similarity=0.257  Sum_probs=49.1

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCC--hHHHHHHHHHHhhCCCcEEEEEe
Q 020259           40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGK--PKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        40 ~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~--~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      ..+|+|.|+ |.+|..+++.|...|. ++++++.+.-              .-..  .|++.+ +.+..  +.++  ...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~--------------~~~~~~~~~~~~-~~l~~--~~v~--~v~   61 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTI--------------TAANPETKEELI-DNYQS--LGVI--LLE   61 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSC--------------CSSCHHHHHHHH-HHHHH--TTCE--EEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCc--------------ccCChHHHHHHH-HHHHh--CCCE--EEE
Confidence            467999996 9999999999999995 6777653320              0001  233322 22322  3444  344


Q ss_pred             cccCCcc--hhhhccCCEEEecCC
Q 020259          117 CRIEDKD--ISFYNDFNIIVLGLD  138 (328)
Q Consensus       117 ~~~~~~~--~~~~~~~dvVi~~~d  138 (328)
                      .++.+..  ...++++|+||.+..
T Consensus        62 ~D~~d~~~l~~~~~~~d~vi~~a~   85 (307)
T 2gas_A           62 GDINDHETLVKAIKQVDIVICAAG   85 (307)
T ss_dssp             CCTTCHHHHHHHHTTCSEEEECSS
T ss_pred             eCCCCHHHHHHHHhCCCEEEECCc
Confidence            5554422  456789999998865

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=92.91  E-value=0.34  Score=42.36  Aligned_cols=36  Identities=28%  Similarity=0.477  Sum_probs=30.0

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +| ++++++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus         5 ~l-~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   41 (259)
T 4e6p_A            5 RL-EGKSALITGSARGIGRAFAEAYVREGA-TVAIADID   41 (259)
T ss_dssp             TT-TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cC-CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35 477888988 68999999999999998 68888743

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=92.90  E-value=0.46  Score=42.19  Aligned_cols=35  Identities=20%  Similarity=0.424  Sum_probs=29.5

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .| +.++++|.| .||+|.++++.|+..|. ++.++|.
T Consensus        22 ~l-~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r   57 (281)
T 3v2h_A           22 SM-MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGF   57 (281)
T ss_dssp             CC-TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             cc-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46 577888888 68999999999999998 7888764

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=92.90  E-value=0.29  Score=42.75  Aligned_cols=77  Identities=13%  Similarity=0.279  Sum_probs=49.0

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++.+|+|.| .|++|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..+  ++.....
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~--~~~~~~~   70 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNE-------------------YELNECLSKWQKKGF--QVTGSVC   70 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTC--CEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--eeEEEEC
Confidence            467788887 78999999999999997 788876432                   234444555555433  3444545


Q ss_pred             ccCCcc--hhh-------h-ccCCEEEecC
Q 020259          118 RIEDKD--ISF-------Y-NDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~~~-------~-~~~dvVi~~~  137 (328)
                      ++.+..  ...       + .+.|+||.+.
T Consensus        71 D~~~~~~~~~~~~~~~~~~~~~id~li~~A  100 (266)
T 1xq1_A           71 DASLRPEREKLMQTVSSMFGGKLDILINNL  100 (266)
T ss_dssp             CTTSHHHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCcEEEECC
Confidence            554421  112       2 5678888764

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=92.88  E-value=0.5  Score=42.55  Aligned_cols=33  Identities=30%  Similarity=0.318  Sum_probs=28.1

Q ss_pred             cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.+|+|.|+ |++|+++++.|+..|. +++++|.
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r   35 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGY-EVYGADR   35 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            3678999996 9999999999999996 7888764

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=92.84  E-value=0.36  Score=43.04  Aligned_cols=35  Identities=37%  Similarity=0.483  Sum_probs=29.5

Q ss_pred             cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +..+|+|.|+ |.+|+.+++.|...|. +++.++...
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   41 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE-EVTVLDDLR   41 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCS
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCC
Confidence            4789999997 8999999999999997 688877544

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=92.83  E-value=0.43  Score=41.67  Aligned_cols=77  Identities=13%  Similarity=0.251  Sum_probs=49.5

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh-CCCcEEEEEe
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER-VSGVNIVPHF  116 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l-np~v~v~~~~  116 (328)
                      ++++++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+. ..  ++....
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~--~~~~~~   63 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQV-------------------DRLHEAARSLKEKFGV--RVLEVA   63 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHHCC--CEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCH-------------------HHHHHHHHHHHHhcCC--ceEEEE
Confidence            467788888 68999999999999997 788876432                   2344445555443 32  344555


Q ss_pred             cccCCcc--hhh-------hccCCEEEecC
Q 020259          117 CRIEDKD--ISF-------YNDFNIIVLGL  137 (328)
Q Consensus       117 ~~~~~~~--~~~-------~~~~dvVi~~~  137 (328)
                      .++.+..  ...       +.+.|+||.+.
T Consensus        64 ~D~~~~~~~~~~~~~~~~~~g~id~lv~~A   93 (263)
T 3ai3_A           64 VDVATPEGVDAVVESVRSSFGGADILVNNA   93 (263)
T ss_dssp             CCTTSHHHHHHHHHHHHHHHSSCSEEEECC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            5555421  122       34788888764

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=92.82  E-value=0.31  Score=43.37  Aligned_cols=84  Identities=21%  Similarity=0.300  Sum_probs=54.8

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +++.++|.| .||+|.++++.|+..|. ++.++|.+.-....+            ..+.+.+.+.+.+..+  ++..+..
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~~~   72 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKL------------PGTIYTAAKEIEEAGG--QALPIVG   72 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSS------------CCCHHHHHHHHHHHTS--EEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhh------------hHHHHHHHHHHHhcCC--cEEEEEC
Confidence            467888888 68999999999999998 788888654322221            1134455666666644  5566666


Q ss_pred             ccCCcc--hh-------hhccCCEEEecC
Q 020259          118 RIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      ++.+..  ..       .+.+.|++|.+.
T Consensus        73 Dv~~~~~v~~~~~~~~~~~g~id~lvnnA  101 (285)
T 3sc4_A           73 DIRDGDAVAAAVAKTVEQFGGIDICVNNA  101 (285)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            665422  12       234789888763

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=92.81  E-value=0.59  Score=41.15  Aligned_cols=91  Identities=19%  Similarity=0.203  Sum_probs=57.2

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      .| ++++++|.| .||+|.++++.|+..|. ++.++|.+.-. .....      ..-...+.+...+.+.+..+  ++..
T Consensus        10 ~l-~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~   78 (278)
T 3sx2_A           10 PL-TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQI-ASVPY------PLATPEELAATVKLVEDIGS--RIVA   78 (278)
T ss_dssp             TT-TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCC-TTCSS------CCCCHHHHHHHHHHHHHHTC--CEEE
T ss_pred             CC-CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeccccc-ccccc------cccchHHHHHHHHHHHhcCC--eEEE
Confidence            46 578888988 68999999999999998 68888754210 00000      00113455666666666654  4556


Q ss_pred             EecccCCcc--hhh-------hccCCEEEecC
Q 020259          115 HFCRIEDKD--ISF-------YNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~~~-------~~~~dvVi~~~  137 (328)
                      +..++.+..  ..+       +.+.|++|.+.
T Consensus        79 ~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA  110 (278)
T 3sx2_A           79 RQADVRDRESLSAALQAGLDELGRLDIVVANA  110 (278)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_pred             EeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            666665532  222       34789998874

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=92.77  E-value=1.1  Score=42.90  Aligned_cols=33  Identities=27%  Similarity=0.279  Sum_probs=27.5

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHh---CCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALS---GFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~---Gvg~itlvD~   72 (328)
                      +..+|+|.| .|.+|+++++.|...   |. ++++++.
T Consensus        72 ~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~-~V~~l~R  108 (478)
T 4dqv_A           72 ELRTVLLTGATGFLGRYLVLELLRRLDVDG-RLICLVR  108 (478)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHHSCTTC-EEEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhcCCCCC-EEEEEEC
Confidence            367899999 599999999999998   54 7888764

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=92.75  E-value=0.47  Score=41.29  Aligned_cols=76  Identities=22%  Similarity=0.366  Sum_probs=48.4

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +++++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+...  ++..+..+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~--~~~~~~~D   59 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYND-------------------ATAKAVASEINQAGG--HAVAVKVD   59 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTC--CEEEEECC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--cEEEEEec
Confidence            46788887 78999999999999997 688876332                   234445555554433  34455555


Q ss_pred             cCCcc--hhh-------hccCCEEEecC
Q 020259          119 IEDKD--ISF-------YNDFNIIVLGL  137 (328)
Q Consensus       119 ~~~~~--~~~-------~~~~dvVi~~~  137 (328)
                      +.+..  ...       +.+.|+||.+.
T Consensus        60 ~~~~~~v~~~~~~~~~~~g~id~lv~nA   87 (256)
T 1geg_A           60 VSDRDQVFAAVEQARKTLGGFDVIVNNA   87 (256)
T ss_dssp             TTSHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            55421  122       23688888764

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=92.72  E-value=1  Score=40.76  Aligned_cols=37  Identities=30%  Similarity=0.498  Sum_probs=28.7

Q ss_pred             HHHHcCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+ +..+|+|.|+ |.+|+.+++.|...|. +++++|..
T Consensus        23 ~~~-~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   60 (343)
T 2b69_A           23 MEK-DRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNF   60 (343)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             ccc-CCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            345 5788999996 9999999999999996 78887743

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=92.71  E-value=0.45  Score=42.12  Aligned_cols=78  Identities=18%  Similarity=0.260  Sum_probs=50.6

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++.+++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++...  ++...
T Consensus        20 l-~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~--~~~~~   76 (277)
T 2rhc_B           20 Q-DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGE-------------------EGLRTTLKELREAGV--EADGR   76 (277)
T ss_dssp             T-TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTC--CEEEE
T ss_pred             C-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCC--ceEEE
Confidence            6 577888887 78999999999999997 688877432                   234445555555433  34455


Q ss_pred             ecccCCcc--hh-------hhccCCEEEecC
Q 020259          116 FCRIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      ..++.+..  ..       .+.+.|+||.+.
T Consensus        77 ~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~~A  107 (277)
T 2rhc_B           77 TCDVRSVPEIEALVAAVVERYGPVDVLVNNA  107 (277)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            55554421  11       224688888764

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=92.71  E-value=0.31  Score=43.10  Aligned_cols=87  Identities=17%  Similarity=0.157  Sum_probs=50.4

Q ss_pred             CccHHHHH-HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh
Q 020259           28 EPGTELRD-DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME  105 (328)
Q Consensus        28 l~G~~~q~-~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~  105 (328)
                      .+|+.... .| +++.++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+
T Consensus        16 ~~gp~~m~~~l-~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~   74 (270)
T 3ftp_A           16 TQGPGSMDKTL-DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTE-------------------AGAEGIGAAFKQ   74 (270)
T ss_dssp             -------CCTT-TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHH
T ss_pred             CCCCcccccCC-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHh
Confidence            34444332 36 466677777 68999999999999998 788876432                   345556666666


Q ss_pred             hCCCcEEEEEecccCCcc--h-------hhhccCCEEEecC
Q 020259          106 RVSGVNIVPHFCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       106 lnp~v~v~~~~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      ....+  .....++.+..  .       +.+.+.|++|.+.
T Consensus        75 ~~~~~--~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA  113 (270)
T 3ftp_A           75 AGLEG--RGAVLNVNDATAVDALVESTLKEFGALNVLVNNA  113 (270)
T ss_dssp             HTCCC--EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             cCCcE--EEEEEeCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            54433  33444444321  1       1234678887764

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=92.67  E-value=0.41  Score=41.88  Aligned_cols=78  Identities=23%  Similarity=0.362  Sum_probs=50.2

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++.+++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+..  .++..+
T Consensus         5 l-~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~--~~~~~~   61 (262)
T 1zem_A            5 F-NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNR-------------------EALEKAEASVREKG--VEARSY   61 (262)
T ss_dssp             T-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHTTT--SCEEEE
T ss_pred             c-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcC--CcEEEE
Confidence            5 467888887 68999999999999997 688876332                   23444555555443  245555


Q ss_pred             ecccCCcc--h-------hhhccCCEEEecC
Q 020259          116 FCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      ..++.+..  .       +.+.+.|+||.+.
T Consensus        62 ~~D~~~~~~~~~~~~~~~~~~g~id~lv~nA   92 (262)
T 1zem_A           62 VCDVTSEEAVIGTVDSVVRDFGKIDFLFNNA   92 (262)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EecCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            55554421  1       1234788888764

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=92.66  E-value=0.41  Score=42.62  Aligned_cols=78  Identities=17%  Similarity=0.246  Sum_probs=49.1

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      .+ ++..++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+++.+.+..  .++..
T Consensus        25 ~~-~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~--~~~~~   81 (283)
T 3v8b_A           25 NQ-PSPVALITGAGSGIGRATALALAADGV-TVGALGRTR-------------------TEVEEVADEIVGAG--GQAIA   81 (283)
T ss_dssp             ---CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHTTTT--CCEEE
T ss_pred             CC-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcC--CcEEE
Confidence            46 577788887 68999999999999998 788887432                   34455555555433  34455


Q ss_pred             EecccCCcc--h-------hhhccCCEEEec
Q 020259          115 HFCRIEDKD--I-------SFYNDFNIIVLG  136 (328)
Q Consensus       115 ~~~~~~~~~--~-------~~~~~~dvVi~~  136 (328)
                      ...++.+..  .       +.+.+.|++|.+
T Consensus        82 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnn  112 (283)
T 3v8b_A           82 LEADVSDELQMRNAVRDLVLKFGHLDIVVAN  112 (283)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EEccCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence            555554421  1       123467887765

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=92.60  E-value=0.37  Score=46.15  Aligned_cols=35  Identities=29%  Similarity=0.252  Sum_probs=31.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ++++|+|+|.|+.|-.+|+.|...|. +++..|...
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~-~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGA-IVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEeCCc
Confidence            47899999999999999999999997 899999654

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=92.60  E-value=0.39  Score=41.22  Aligned_cols=77  Identities=16%  Similarity=0.177  Sum_probs=49.3

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCC------eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEE
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFK------NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNI  112 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg------~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v  112 (328)
                      +.+|+|.| .|++|.++++.|+..|..      ++.+++.+.                   .+.+.+.+.+.+.  ..++
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~-------------------~~~~~~~~~~~~~--~~~~   60 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTA-------------------ADLEKISLECRAE--GALT   60 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCH-------------------HHHHHHHHHHHTT--TCEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCH-------------------HHHHHHHHHHHcc--CCee
Confidence            45688887 789999999999999985      687776432                   2344444555433  3355


Q ss_pred             EEEecccCCcc--hhh-------hccCCEEEecC
Q 020259          113 VPHFCRIEDKD--ISF-------YNDFNIIVLGL  137 (328)
Q Consensus       113 ~~~~~~~~~~~--~~~-------~~~~dvVi~~~  137 (328)
                      ..+..++.+..  ...       +.+.|+||.+.
T Consensus        61 ~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~~A   94 (244)
T 2bd0_A           61 DTITADISDMADVRRLTTHIVERYGHIDCLVNNA   94 (244)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred             eEEEecCCCHHHHHHHHHHHHHhCCCCCEEEEcC
Confidence            56666665421  112       23688888764

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=92.58  E-value=0.24  Score=43.36  Aligned_cols=79  Identities=15%  Similarity=0.180  Sum_probs=49.7

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++.+|+|.| .|++|.++++.|+..|. ++.+++...                  ..+.+.+.+.+++..+  ++...
T Consensus        19 ~-~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~l~~~~~--~~~~~   76 (274)
T 1ja9_A           19 L-AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSS------------------SKAAEEVVAELKKLGA--QGVAI   76 (274)
T ss_dssp             T-TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             C-CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCc------------------hHHHHHHHHHHHhcCC--cEEEE
Confidence            5 577888888 68999999999999997 677776410                  1234445555555443  34445


Q ss_pred             ecccCCcc--hhhh-------ccCCEEEecC
Q 020259          116 FCRIEDKD--ISFY-------NDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~~~~-------~~~dvVi~~~  137 (328)
                      ..++.+..  ...+       .+.|+||.+.
T Consensus        77 ~~D~~~~~~~~~~~~~~~~~~~~~d~vi~~A  107 (274)
T 1ja9_A           77 QADISKPSEVVALFDKAVSHFGGLDFVMSNS  107 (274)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred             EecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            55554421  2222       3678887764

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=92.57  E-value=0.48  Score=41.86  Aligned_cols=84  Identities=18%  Similarity=0.264  Sum_probs=52.3

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++++++|.| .||+|.++++.|+..|. ++.++|.+.-....+.            .+.+.+.+.+.+..+  ++..+..
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~------------~~~~~~~~~~~~~~~--~~~~~~~   69 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLP------------GTIHSAAAAVNAAGG--QGLALKC   69 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSC------------CCHHHHHHHHHHHTS--EEEEEEC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhH------------HHHHHHHHHHHhcCC--eEEEEeC
Confidence            467788887 78999999999999998 7888885542211111            123344555555533  4555556


Q ss_pred             ccCCcc--h-------hhhccCCEEEecC
Q 020259          118 RIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      ++.+..  .       +.+.+.|++|.+.
T Consensus        70 Dv~~~~~v~~~~~~~~~~~g~iD~lvnnA   98 (274)
T 3e03_A           70 DIREEDQVRAAVAATVDTFGGIDILVNNA   98 (274)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            665421  1       1234678887764

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=92.55  E-value=0.21  Score=43.54  Aligned_cols=34  Identities=32%  Similarity=0.435  Sum_probs=29.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++.+|+|.| .|++|.++++.|+..|. +++++|.+
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~   40 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLD   40 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467899997 78999999999999997 78888754

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=92.55  E-value=0.5  Score=42.86  Aligned_cols=32  Identities=16%  Similarity=0.278  Sum_probs=25.3

Q ss_pred             cEEEEcCChHHHHH-HHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVGAGGLGCEL-LKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~ev-aknL~l~Gvg~itlvD~d   73 (328)
                      +|.|||+|.+|... ++.|...|+.-+.++|.+
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~   34 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTS   34 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSC
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCC
Confidence            69999999999998 888888666444577744

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.52  E-value=0.43  Score=42.03  Aligned_cols=33  Identities=15%  Similarity=0.242  Sum_probs=27.7

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   38 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGR   38 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            466788887 68999999999999997 7888764

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=92.51  E-value=0.28  Score=43.71  Aligned_cols=35  Identities=26%  Similarity=0.287  Sum_probs=28.6

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | +++.++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus         6 l-~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~   41 (280)
T 3tox_A            6 L-EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARN   41 (280)
T ss_dssp             T-TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSC
T ss_pred             C-CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5 467788887 68999999999999998 68887643

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=92.51  E-value=0.42  Score=42.58  Aligned_cols=80  Identities=16%  Similarity=0.243  Sum_probs=50.9

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      .| ++.+|+|.| .|++|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++.. ..++..
T Consensus        23 ~l-~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~-~~~~~~   80 (302)
T 1w6u_A           23 SF-QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKM-------------------DVLKATAEQISSQT-GNKVHA   80 (302)
T ss_dssp             TT-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHH-SSCEEE
T ss_pred             cC-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHhc-CCceEE
Confidence            36 578899998 68999999999999997 688876432                   23444455555441 124555


Q ss_pred             EecccCCcc--hh-------hhccCCEEEecC
Q 020259          115 HFCRIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      +..++.+..  ..       .+.+.|+||.+.
T Consensus        81 ~~~Dl~~~~~~~~~~~~~~~~~g~id~li~~A  112 (302)
T 1w6u_A           81 IQCDVRDPDMVQNTVSELIKVAGHPNIVINNA  112 (302)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             EEeCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            555555421  11       233568888764

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=92.47  E-value=0.44  Score=40.94  Aligned_cols=33  Identities=24%  Similarity=0.355  Sum_probs=27.7

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.+|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r   39 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGT   39 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            466788887 78999999999999997 6888764

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=92.46  E-value=0.13  Score=46.86  Aligned_cols=34  Identities=29%  Similarity=0.401  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|||+|++|+.++..|+.+|. .++++|.+.
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (320)
T 3i83_A            2 SLNILVIGTGAIGSFYGALLAKTGH-CVSVVSRSD   35 (320)
T ss_dssp             -CEEEEESCCHHHHHHHHHHHHTTC-EEEEECSTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCh
Confidence            4689999999999999999999996 899987543

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=92.42  E-value=0.13  Score=47.57  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=29.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      -||+|||+|..|..+|-.|.+.|+ +++|+|.+.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~-~v~v~Er~~   34 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGI-KVTIYERNS   34 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            589999999999999999999999 799998543

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=92.41  E-value=0.13  Score=46.24  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .| ...+|+|||+|.+|..+++.|...|. +++++|..
T Consensus       152 ~l-~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~  187 (293)
T 3d4o_A          152 TI-HGANVAVLGLGRVGMSVARKFAALGA-KVKVGARE  187 (293)
T ss_dssp             CS-TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CC-CCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            36 58899999999999999999999998 89998843

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=92.41  E-value=0.16  Score=43.85  Aligned_cols=34  Identities=29%  Similarity=0.351  Sum_probs=31.0

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +..+|+|||.|..|.++|..|++.|. +++++|..
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~-~v~lie~~   35 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGV-RVGLLTQS   35 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecC
Confidence            46789999999999999999999998 79999976

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=92.38  E-value=0.18  Score=44.76  Aligned_cols=78  Identities=19%  Similarity=0.231  Sum_probs=49.6

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++.+++|.| .||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+++..+  ++...
T Consensus        24 l-~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~--~~~~~   80 (271)
T 4ibo_A           24 L-GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTD-------------------PSRVAQTVQEFRNVGH--DAEAV   80 (271)
T ss_dssp             C-TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSC-------------------HHHHHHHHHHHHHTTC--CEEEC
T ss_pred             C-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCC--ceEEE
Confidence            5 467777777 68999999999999998 67776532                   2345556666665443  34444


Q ss_pred             ecccCCcc--hhh-------hccCCEEEecC
Q 020259          116 FCRIEDKD--ISF-------YNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~~~-------~~~~dvVi~~~  137 (328)
                      ..++.+..  .++       +.+.|+||.+.
T Consensus        81 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nA  111 (271)
T 4ibo_A           81 AFDVTSESEIIEAFARLDEQGIDVDILVNNA  111 (271)
T ss_dssp             CCCTTCHHHHHHHHHHHHHHTCCCCEEEECC
T ss_pred             EcCCCCHHHHHHHHHHHHHHCCCCCEEEECC
Confidence            45554421  112       23678887763

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=92.36  E-value=0.55  Score=41.10  Aligned_cols=34  Identities=26%  Similarity=0.426  Sum_probs=29.1

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      | ++.+|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus        14 l-~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r   48 (278)
T 2bgk_A           14 L-QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADI   48 (278)
T ss_dssp             T-TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             c-cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            6 578899998 68999999999999997 7888764

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=92.35  E-value=1.1  Score=40.16  Aligned_cols=80  Identities=13%  Similarity=0.152  Sum_probs=49.2

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCC-ChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVG-KPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        40 ~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG-~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ..+|+|.|+ |.+|+.+++.|...|. ++++++.+.-              +-. ..|++.+. .+..  +.++  ....
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~--------------~~~~~~~~~~l~-~~~~--~~v~--~v~~   63 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSH-PTFIYARPLT--------------PDSTPSSVQLRE-EFRS--MGVT--IIEG   63 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECCCC--------------TTCCHHHHHHHH-HHHH--TTCE--EEEC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCC-cEEEEECCcc--------------cccChHHHHHHH-Hhhc--CCcE--EEEe
Confidence            467999995 9999999999999995 6777764310              000 12332222 2222  3443  3445


Q ss_pred             ccCCc--chhhhccCCEEEecCCC
Q 020259          118 RIEDK--DISFYNDFNIIVLGLDS  139 (328)
Q Consensus       118 ~~~~~--~~~~~~~~dvVi~~~d~  139 (328)
                      ++.+.  -...++++|+||.+...
T Consensus        64 D~~d~~~l~~a~~~~d~vi~~a~~   87 (321)
T 3c1o_A           64 EMEEHEKMVSVLKQVDIVISALPF   87 (321)
T ss_dssp             CTTCHHHHHHHHTTCSEEEECCCG
T ss_pred             cCCCHHHHHHHHcCCCEEEECCCc
Confidence            55442  24567899999988653

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=92.34  E-value=0.56  Score=41.34  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=29.3

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | ++.+++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus        19 l-~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   54 (273)
T 1ae1_A           19 L-KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRN   54 (273)
T ss_dssp             C-TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             C-CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5 467888888 68999999999999997 68887643

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=92.34  E-value=0.14  Score=46.21  Aligned_cols=33  Identities=21%  Similarity=0.450  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|.+|+.+|..|+.+|. +++++|.+.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            479999999999999999999997 799998543

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=92.31  E-value=0.51  Score=42.79  Aligned_cols=34  Identities=29%  Similarity=0.529  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF-KNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d   73 (328)
                      ..+|.|||+|.+|+.++..|+..|. .++.|+|-+
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~   48 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLS   48 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            4789999999999999999999996 469999843

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=92.29  E-value=0.44  Score=40.97  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=27.2

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ++.+|+|.| .|++|.++++.|+..|. ++.++|
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~   36 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNG   36 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence            467788887 68999999999999997 677774

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=92.29  E-value=0.37  Score=41.69  Aligned_cols=78  Identities=21%  Similarity=0.287  Sum_probs=49.3

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++.+++|.| .||+|.++++.|+..|. ++.+++..                  ...+.+.+++.+++..+  ++..+..
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~------------------~~~~~~~~~~~~~~~~~--~~~~~~~   61 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAG------------------NEQKANEVVDEIKKLGS--DAIAVRA   61 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS------------------CHHHHHHHHHHHHHTTC--CEEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC------------------CHHHHHHHHHHHHhcCC--cEEEEEc
Confidence            356778877 78999999999999997 67776531                  01245555566655443  3445555


Q ss_pred             ccCCcc--hhh-------hccCCEEEecC
Q 020259          118 RIEDKD--ISF-------YNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~~~-------~~~~dvVi~~~  137 (328)
                      ++.+..  ...       +.+.|++|.+.
T Consensus        62 D~~~~~~~~~~~~~~~~~~g~id~lv~nA   90 (246)
T 2uvd_A           62 DVANAEDVTNMVKQTVDVFGQVDILVNNA   90 (246)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            555421  122       34788888764

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=92.27  E-value=0.4  Score=43.06  Aligned_cols=78  Identities=15%  Similarity=0.241  Sum_probs=49.4

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++++|+|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++..+ .++..+..
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~-~~~~~~~~   98 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSP-------------------RELSSVTAELGELGA-GNVIGVRL   98 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSG-------------------GGGHHHHHHHTTSSS-SCEEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHhhCC-CcEEEEEE
Confidence            466777777 68999999999999998 788887442                   233444555554431 24555555


Q ss_pred             ccCCcc---------hhhhccCCEEEecC
Q 020259          118 RIEDKD---------ISFYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~---------~~~~~~~dvVi~~~  137 (328)
                      ++.+..         .+.+.+.|++|.+.
T Consensus        99 Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA  127 (293)
T 3rih_A           99 DVSDPGSCADAARTVVDAFGALDVVCANA  127 (293)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             eCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            555421         12234678887753

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=92.27  E-value=0.57  Score=40.70  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=28.8

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++.+|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~   45 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLP   45 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467889987 78999999999999997 68887744

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=92.27  E-value=0.31  Score=42.27  Aligned_cols=78  Identities=22%  Similarity=0.327  Sum_probs=50.0

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++++++|.| .||+|.++++.|+..|. ++.++|...                  ..+.+.+.+.+++..+  ++..+..
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~~~   61 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGS------------------KEKAEAVVEEIKAKGV--DSFAIQA   61 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTS--CEEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCC------------------HHHHHHHHHHHHhcCC--cEEEEEc
Confidence            356677777 68999999999999998 677765321                  1355666666666543  4445555


Q ss_pred             ccCCcc--hh-------hhccCCEEEecC
Q 020259          118 RIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      ++.+..  ..       .+.+.|++|.+.
T Consensus        62 Dv~d~~~v~~~~~~~~~~~g~id~lv~nA   90 (246)
T 3osu_A           62 NVADADEVKAMIKEVVSQFGSLDVLVNNA   90 (246)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            555421  12       234778887763

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=92.21  E-value=0.59  Score=40.70  Aligned_cols=32  Identities=34%  Similarity=0.614  Sum_probs=27.0

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +++++|.| .||+|.++++.|+..|. ++.++|.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   34 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADL   34 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEEC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            46788887 78999999999999997 6888763

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=92.20  E-value=0.44  Score=41.47  Aligned_cols=36  Identities=28%  Similarity=0.328  Sum_probs=30.4

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .| ++++++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus         9 ~l-~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   45 (252)
T 3f1l_A            9 LL-NDRIILVTGASDGIGREAAMTYARYGA-TVILLGRN   45 (252)
T ss_dssp             TT-TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cc-CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46 578888888 68999999999999998 78888743

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=92.19  E-value=0.48  Score=43.69  Aligned_cols=87  Identities=16%  Similarity=0.225  Sum_probs=55.0

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      +| +++.|+|.| .||+|.++++.|+..|. ++.+++.+.-....+.            .+.+.+++.+.+..  .++..
T Consensus        42 ~l-~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~------------~~l~~~~~~~~~~g--~~~~~  105 (346)
T 3kvo_A           42 RL-AGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLL------------GTIYTAAEEIEAVG--GKALP  105 (346)
T ss_dssp             TT-TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSC------------CCHHHHHHHHHHTT--CEEEE
T ss_pred             CC-CCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhH------------HHHHHHHHHHHhcC--CeEEE
Confidence            46 578899998 68999999999999997 7888875532211111            12334455566543  35556


Q ss_pred             EecccCCcc--h-------hhhccCCEEEecCC
Q 020259          115 HFCRIEDKD--I-------SFYNDFNIIVLGLD  138 (328)
Q Consensus       115 ~~~~~~~~~--~-------~~~~~~dvVi~~~d  138 (328)
                      +..++.+..  .       +.+.+.|+||.+..
T Consensus       106 ~~~Dv~d~~~v~~~~~~~~~~~g~iDilVnnAG  138 (346)
T 3kvo_A          106 CIVDVRDEQQISAAVEKAIKKFGGIDILVNNAS  138 (346)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            666665422  1       22347888887643

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=92.18  E-value=0.4  Score=41.29  Aligned_cols=33  Identities=18%  Similarity=0.341  Sum_probs=27.8

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +.+|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~   35 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLS   35 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46788888 68999999999999996 78888743

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=92.18  E-value=1.4  Score=38.73  Aligned_cols=31  Identities=16%  Similarity=0.254  Sum_probs=25.6

Q ss_pred             cEEEEc-CChHHHHHHHHHHHh-CCCeEEEEeCC
Q 020259           42 RILVVG-AGGLGCELLKDLALS-GFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~-Gvg~itlvD~d   73 (328)
                      +|+|.| .|.+|+.+++.|... |. ++++++.+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~   34 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRN   34 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESS
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECC
Confidence            699999 599999999999987 65 67777654

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=92.16  E-value=0.39  Score=42.92  Aligned_cols=37  Identities=24%  Similarity=0.476  Sum_probs=30.8

Q ss_pred             HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+| ++++|+|.| .||+|.++++.|+..|. ++.++|.+
T Consensus        43 ~~l-~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~   80 (291)
T 3ijr_A           43 EKL-KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLD   80 (291)
T ss_dssp             STT-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCC-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            357 688899998 68999999999999997 68887743

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=92.14  E-value=0.33  Score=42.68  Aligned_cols=80  Identities=14%  Similarity=0.187  Sum_probs=52.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +++.++|.| .+|+|.++++.|+..|. ++.++|...                ....+.+.+.+.+++..  .++..+..
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~----------------~~~~~~~~~~~~~~~~~--~~~~~~~~   70 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQA----------------KDSDTANKLKDELEDQG--AKVALYQS   70 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCG----------------GGHHHHHHHHHHHHTTT--CEEEEEEC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCc----------------cCHHHHHHHHHHHHhcC--CcEEEEEC
Confidence            467788887 68999999999999998 677765321                11235566666666553  35666666


Q ss_pred             ccCCcc--hh-------hhccCCEEEecC
Q 020259          118 RIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      ++.+..  ..       .+.+.|++|.+.
T Consensus        71 Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA   99 (262)
T 3ksu_A           71 DLSNEEEVAKLFDFAEKEFGKVDIAINTV   99 (262)
T ss_dssp             CCCSHHHHHHHHHHHHHHHCSEEEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            665422  11       234678887764

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=92.13  E-value=1.3  Score=39.30  Aligned_cols=79  Identities=15%  Similarity=0.240  Sum_probs=48.3

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..+|+|.| .|.+|..+++.|...|. ++++++.+.-.              ....|++.+. .+.  .+.++  ....+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~--------------~~~~~~~~~~-~~~--~~~~~--~~~~D   63 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEVV--------------SNIDKVQMLL-YFK--QLGAK--LIEAS   63 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCCS--------------SCHHHHHHHH-HHH--TTTCE--EECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECCCcc--------------cchhHHHHHH-HHH--hCCeE--EEeCC
Confidence            46799999 59999999999999995 67776532100              0011332221 122  23443  44455


Q ss_pred             cCCcc--hhhhccCCEEEecCC
Q 020259          119 IEDKD--ISFYNDFNIIVLGLD  138 (328)
Q Consensus       119 ~~~~~--~~~~~~~dvVi~~~d  138 (328)
                      +.+..  ...++++|+||.+..
T Consensus        64 ~~d~~~l~~~~~~~d~vi~~a~   85 (313)
T 1qyd_A           64 LDDHQRLVDALKQVDVVISALA   85 (313)
T ss_dssp             SSCHHHHHHHHTTCSEEEECCC
T ss_pred             CCCHHHHHHHHhCCCEEEECCc
Confidence            55422  456789999998754

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=92.12  E-value=0.58  Score=41.75  Aligned_cols=29  Identities=38%  Similarity=0.596  Sum_probs=23.3

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      .+|+|.| .|.+|+.+++.|...|  .++.++
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~   31 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESN--EIVVID   31 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTS--CEEEEC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCC--CEEEEE
Confidence            3799999 5999999999999999  444444

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=92.12  E-value=1.5  Score=42.55  Aligned_cols=32  Identities=19%  Similarity=0.291  Sum_probs=27.9

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|+|.| .|.+|+.+++.|...|. +++.++.+
T Consensus       148 m~VLVTGatG~IG~~l~~~L~~~G~-~V~~l~R~  180 (516)
T 3oh8_A          148 LTVAITGSRGLVGRALTAQLQTGGH-EVIQLVRK  180 (516)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4899999 69999999999999997 78887754

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=92.11  E-value=0.12  Score=46.40  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|+|||+|++|+.++..|..+|. .++++|.+
T Consensus         2 ~mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~   34 (294)
T 3g17_A            2 SLSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRH   34 (294)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESS
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCC-eEEEEEec
Confidence            4689999999999999999999996 79999876

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=92.08  E-value=0.46  Score=42.06  Aligned_cols=35  Identities=17%  Similarity=0.455  Sum_probs=26.9

Q ss_pred             HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ..| + ++++|.| .||+|.++++.|+..|. ++.++|.
T Consensus        18 ~~~-~-k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r   53 (272)
T 2nwq_A           18 SHM-S-STLFITGATSGFGEACARRFAEAGW-SLVLTGR   53 (272)
T ss_dssp             ----C-CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCc-C-cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            446 5 6677777 78999999999999997 6888774

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=92.08  E-value=0.49  Score=43.51  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=25.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHh--CCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALS--GFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~--Gvg~itlvD~   72 (328)
                      ..+|.|||+|.+|...++.|...  |+.-+.++|.
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~   47 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDI   47 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECS
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcC
Confidence            35799999999999999999987  5533446663

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=92.07  E-value=0.15  Score=46.00  Aligned_cols=36  Identities=22%  Similarity=0.354  Sum_probs=32.0

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .| ...+|+|||+|.+|..+++.|...|. +++++|..
T Consensus       154 ~l-~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~  189 (300)
T 2rir_A          154 TI-HGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARS  189 (300)
T ss_dssp             CS-TTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CC-CCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            36 58899999999999999999999998 89998843

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=92.04  E-value=0.13  Score=46.75  Aligned_cols=33  Identities=33%  Similarity=0.329  Sum_probs=28.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|+|||+|++|+.++..|+.+|. .+++++.+
T Consensus         2 ~mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~   34 (312)
T 3hn2_A            2 SLRIAIVGAGALGLYYGALLQRSGE-DVHFLLRR   34 (312)
T ss_dssp             --CEEEECCSTTHHHHHHHHHHTSC-CEEEECST
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcC
Confidence            4689999999999999999999996 78888754

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=92.03  E-value=0.28  Score=44.66  Aligned_cols=76  Identities=20%  Similarity=0.338  Sum_probs=47.7

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC----CCcEEEEE
Q 020259           42 RILVVGA-GGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV----SGVNIVPH  115 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln----p~v~v~~~  115 (328)
                      ||+|+|+ |.+|+.++..|+..|. .++.|+|-.    .|             ..|++..+..+....    ..+++...
T Consensus         2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~----~~-------------~~~~~~~~~dl~~~~~~~~~~~~i~~~   64 (313)
T 1hye_A            2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE----HS-------------INKLEGLREDIYDALAGTRSDANIYVE   64 (313)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG----GG-------------HHHHHHHHHHHHHHHTTSCCCCEEEEE
T ss_pred             EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCC----Cc-------------hhhhHHHHHHHHHhHHhcCCCeEEEeC
Confidence            7999998 9999999999998886 459998840    00             123443333333322    33455442


Q ss_pred             ecccCCcchhhhccCCEEEecCC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      +.    .-.+.++++|+||.+..
T Consensus        65 ~d----~l~~al~gaD~Vi~~Ag   83 (313)
T 1hye_A           65 SD----ENLRIIDESDVVIITSG   83 (313)
T ss_dssp             ET----TCGGGGTTCSEEEECCS
T ss_pred             Cc----chHHHhCCCCEEEECCC
Confidence            11    12455789999987754

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=92.03  E-value=0.95  Score=41.24  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChHHHH-HHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCE-LLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~e-vaknL~l~Gvg~itlvD~d   73 (328)
                      -.+|.+||.|+.|-. +|+.|...|. ++++.|..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~-~V~~~D~~   37 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGF-EVSGCDAK   37 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            368999999999996 9999999998 79999854

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=92.03  E-value=0.5  Score=41.85  Aligned_cols=35  Identities=26%  Similarity=0.320  Sum_probs=29.4

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | ++.+|+|.| .||+|.++++.|+..|. ++.++|.+
T Consensus        27 l-~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~   62 (276)
T 2b4q_A           27 L-AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARD   62 (276)
T ss_dssp             C-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             C-CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            6 577889998 68999999999999997 68887643

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=92.02  E-value=0.63  Score=42.38  Aligned_cols=74  Identities=18%  Similarity=0.240  Sum_probs=47.5

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           42 RILVVGA-GGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      ||+|+|+ |.+|..++..|+..|. .+|.++|-+.                     ++..+..|.......++.....  
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~---------------------~~~~a~dL~~~~~~~~l~~~~~--   58 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH---------------------TPGVAADLSHIETRATVKGYLG--   58 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS---------------------HHHHHHHHTTSSSSCEEEEEES--
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc---------------------cHHHHHHHhccCcCceEEEecC--
Confidence            7999998 9999999999998875 5799999543                     1122233444333334444311  


Q ss_pred             CCcchhhhccCCEEEecCC
Q 020259          120 EDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d  138 (328)
                      .....+.++++|+||.+..
T Consensus        59 t~d~~~a~~~aDvVvi~ag   77 (314)
T 1mld_A           59 PEQLPDCLKGCDVVVIPAG   77 (314)
T ss_dssp             GGGHHHHHTTCSEEEECCS
T ss_pred             CCCHHHHhCCCCEEEECCC
Confidence            0112345799999988754

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=92.01  E-value=0.62  Score=42.13  Aligned_cols=32  Identities=34%  Similarity=0.512  Sum_probs=27.6

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ..+|+|.| .|.+|+++++.|+..|. +++++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r   34 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEec
Confidence            46899998 69999999999999996 6888774

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=91.94  E-value=0.36  Score=42.20  Aligned_cols=34  Identities=24%  Similarity=0.536  Sum_probs=29.0

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++.+|+|.| .||+|.++++.|+..|. ++.++|.+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   45 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLD   45 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467889998 78999999999999997 78888754

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=91.94  E-value=0.79  Score=40.05  Aligned_cols=35  Identities=26%  Similarity=0.342  Sum_probs=29.3

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | ++.+|+|.| .||+|.++++.|+..|. ++.++|.+
T Consensus         5 l-~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   40 (260)
T 1nff_A            5 L-TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDIL   40 (260)
T ss_dssp             T-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             C-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5 467889998 78999999999999997 68887643

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=91.91  E-value=0.62  Score=40.96  Aligned_cols=35  Identities=31%  Similarity=0.428  Sum_probs=29.1

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | ++++++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus        19 l-~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   54 (267)
T 1vl8_A           19 L-RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRN   54 (267)
T ss_dssp             C-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             C-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5 467788887 78999999999999997 68887643

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=91.90  E-value=0.21  Score=45.87  Aligned_cols=33  Identities=27%  Similarity=0.231  Sum_probs=29.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ..+|+|+|+|++|..++..+...|.++++.+|.
T Consensus       168 g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~  200 (348)
T 2d8a_A          168 GKSVLITGAGPLGLLGIAVAKASGAYPVIVSEP  200 (348)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            568999999999999999999999978888763

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=91.88  E-value=0.79  Score=39.80  Aligned_cols=34  Identities=29%  Similarity=0.476  Sum_probs=28.9

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +..+|+|.| .||+|.++++.|+..|. ++.++|.+
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~   42 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRD   42 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCC
Confidence            477889998 57999999999999997 68888754

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=91.84  E-value=0.44  Score=41.74  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=28.1

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      +| ++++++|.| .||+|.++++.|+..|. ++.+++
T Consensus         5 ~l-~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~   39 (259)
T 3edm_A            5 RF-TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTY   39 (259)
T ss_dssp             TT-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CC-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence            35 577888888 67999999999999998 566663

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=91.83  E-value=0.24  Score=44.39  Aligned_cols=33  Identities=15%  Similarity=0.180  Sum_probs=30.1

Q ss_pred             HHcCCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q 020259           37 LQEYARILVVGAGG-LGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        37 Lr~~~~VliiG~gg-lG~evaknL~l~Gvg~itlvD   71 (328)
                      | ..++++|||.|+ +|..+++.|...|. .+|+++
T Consensus       148 l-~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~  181 (276)
T 3ngx_A          148 Y-HENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCH  181 (276)
T ss_dssp             C-CSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             c-CCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEe
Confidence            7 699999999987 89999999999998 799986

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=91.82  E-value=0.71  Score=40.99  Aligned_cols=37  Identities=22%  Similarity=0.338  Sum_probs=27.3

Q ss_pred             HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..| +++.++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus        29 ~~l-~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~   66 (281)
T 4dry_A           29 GSG-EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRR   66 (281)
T ss_dssp             ------CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            346 577788887 68999999999999998 68887743

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=91.79  E-value=0.55  Score=41.52  Aligned_cols=34  Identities=18%  Similarity=0.341  Sum_probs=28.2

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++++++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   39 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRS   39 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            466778877 78999999999999997 78887743

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=91.75  E-value=1.2  Score=39.41  Aligned_cols=81  Identities=21%  Similarity=0.297  Sum_probs=48.8

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..+|+|.|+ |.+|..+++.|...|. ++++++.+.-..    +         ...|++.+ +.+.  .+.++  ....+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~----~---------~~~~~~~~-~~l~--~~~v~--~v~~D   64 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTAS----S---------NSEKAQLL-ESFK--ASGAN--IVHGS   64 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTT----T---------THHHHHHH-HHHH--TTTCE--EECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-CEEEEECCcccc----c---------CHHHHHHH-HHHH--hCCCE--EEEec
Confidence            467999996 9999999999999995 677765322100    0         01233222 1222  23443  34455


Q ss_pred             cCCcc--hhhhccCCEEEecCCC
Q 020259          119 IEDKD--ISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~--~~~~~~~dvVi~~~d~  139 (328)
                      +.+..  ...++++|+||.+...
T Consensus        65 ~~d~~~l~~~~~~~d~vi~~a~~   87 (308)
T 1qyc_A           65 IDDHASLVEAVKNVDVVISTVGS   87 (308)
T ss_dssp             TTCHHHHHHHHHTCSEEEECCCG
T ss_pred             cCCHHHHHHHHcCCCEEEECCcc
Confidence            54422  4567889999998654

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=91.73  E-value=0.48  Score=43.36  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=24.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeC
Q 020259           41 ARILVVGAGGLGCELLKDLALS-GFKNLEVIDM   72 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~-Gvg~itlvD~   72 (328)
                      .+|.|||+|.+|...+++|... |+.-+.++|.
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~   37 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADP   37 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECC
Confidence            5799999999999999999875 4422335553

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=91.72  E-value=0.2  Score=45.95  Aligned_cols=36  Identities=28%  Similarity=0.456  Sum_probs=32.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      ...|+|||+|.+|+.+|..|++.|. +++|+|.+.+.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~~~~   41 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccCCC
Confidence            5689999999999999999999997 89999976653

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=91.71  E-value=0.26  Score=49.89  Aligned_cols=35  Identities=37%  Similarity=0.636  Sum_probs=31.3

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ...+|+|||.|..|.+.|..|++.|. +++|+|...
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~-~V~liE~~~  424 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGY-DVVLAEAGR  424 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            35789999999999999999999998 799999753

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=91.65  E-value=0.17  Score=46.32  Aligned_cols=32  Identities=41%  Similarity=0.571  Sum_probs=28.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ..+|+|||+|++|+.++..|+.+|. .++++|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~r   34 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGE-AINVLAR   34 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            5689999999999999999999997 7888863

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=91.63  E-value=1.1  Score=40.44  Aligned_cols=34  Identities=21%  Similarity=0.329  Sum_probs=28.8

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +..+|+|.| .|++|..+++.|+..|. +++++|.+
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~   54 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD-KVVGIDNF   54 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            467899998 69999999999999995 78888754

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=91.61  E-value=0.27  Score=43.40  Aligned_cols=37  Identities=22%  Similarity=0.295  Sum_probs=30.2

Q ss_pred             HHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           34 RDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        34 q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ...| ++++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus        22 m~~l-~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r   59 (266)
T 3grp_A           22 MFKL-TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGT   59 (266)
T ss_dssp             TTCC-TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             hhcc-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            3456 577888887 68999999999999997 6888764

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=91.60  E-value=0.3  Score=43.15  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=28.4

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...+|+|.| .|.+|+++++.|...|. ++++++.+
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   45 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNV-EVIPTDVQ   45 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTT
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCC-eEEeccCc
Confidence            467899998 68999999999999995 78887754

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=91.58  E-value=0.66  Score=41.99  Aligned_cols=91  Identities=21%  Similarity=0.280  Sum_probs=55.2

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      +| +++.++|.| .||+|.++++.|+..|. ++.++|.+.-. .++..    .  .-...+.+.+.+.+.+...  ++..
T Consensus        43 ~l-~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~-~~~~~----~--~~~~~~~~~~~~~~~~~~~--~~~~  111 (317)
T 3oec_A           43 RL-QGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQ-PNLDY----A--QGSPEELKETVRLVEEQGR--RIIA  111 (317)
T ss_dssp             TT-TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCC-TTCCS----C--CCCHHHHHHHHHHHHHTTC--CEEE
T ss_pred             cc-CCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEeccccc-ccccc----c--ccCHHHHHHHHHHHHhcCC--eEEE
Confidence            45 466777777 68999999999999998 78888754311 11110    0  0112345555566665543  4556


Q ss_pred             EecccCCcc--hh-------hhccCCEEEecC
Q 020259          115 HFCRIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      +..++.+..  ..       .+.+.|++|.+.
T Consensus       112 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA  143 (317)
T 3oec_A          112 RQADVRDLASLQAVVDEALAEFGHIDILVSNV  143 (317)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            666665422  22       234789998864

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=91.57  E-value=0.38  Score=44.95  Aligned_cols=83  Identities=14%  Similarity=0.189  Sum_probs=51.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      ..+|+|||.|.+|.|+|..|...|. ++|+++...-        ++  ....+..-++.+.+.+++.  .+++.... .+
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~-~Vtvv~~~~~--------~l--~~~~~~~~~~~~~~~l~~~--gV~~~~~~-~v  211 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGT-PASIGIILEY--------PL--ERQLDRDGGLFLKDKLDRL--GIKIYTNS-NF  211 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTC-CEEEECSSSS--------SC--TTTSCHHHHHHHHHHHHTT--TCEEECSC-CG
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-eEEEEEcCCc--------cc--hhhcCHHHHHHHHHHHHhC--CCEEEeCC-EE
Confidence            6899999999999999999999997 7999875431        11  1112333455566666654  45543321 11


Q ss_pred             CCcchhhhccCCEEEecCC
Q 020259          120 EDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d  138 (328)
                      ... ... -.+|+||.++.
T Consensus       212 ~~i-g~~-~~~D~vv~a~G  228 (385)
T 3klj_A          212 EEM-GDL-IRSSCVITAVG  228 (385)
T ss_dssp             GGC-HHH-HHHSEEEECCC
T ss_pred             EEc-CeE-EecCeEEECcC
Confidence            111 111 24899988866

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=91.53  E-value=0.7  Score=41.37  Aligned_cols=91  Identities=18%  Similarity=0.157  Sum_probs=55.9

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      +| +++.++|.| .+|+|.++++.|+..|. ++.++|.+.-...    ..+ .  .-...+.+.+.+.+.+..+  ++..
T Consensus        25 ~l-~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~----~~~-~--~~~~~~~~~~~~~~~~~~~--~~~~   93 (299)
T 3t7c_A           25 KV-EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDG----VKL-P--MSTPDDLAETVRQVEALGR--RIIA   93 (299)
T ss_dssp             TT-TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTT----CCS-C--CCCHHHHHHHHHHHHHTTC--CEEE
T ss_pred             cc-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeccccccc----ccc-c--ccCHHHHHHHHHHHHhcCC--ceEE
Confidence            46 577888888 68999999999999998 6888875421100    000 0  0112355556666666543  4556


Q ss_pred             EecccCCcc--h-------hhhccCCEEEecC
Q 020259          115 HFCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      ...++.+..  .       +.+.+.|++|.+.
T Consensus        94 ~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nA  125 (299)
T 3t7c_A           94 SQVDVRDFDAMQAAVDDGVTQLGRLDIVLANA  125 (299)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EECCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            666665532  1       2234789988763

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=91.48  E-value=0.58  Score=41.42  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=27.7

Q ss_pred             HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+ +++.++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus        24 ~~~-~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~   61 (272)
T 4dyv_A           24 SKT-GKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRR   61 (272)
T ss_dssp             -----CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCC-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            346 466777777 68999999999999998 68888743

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=91.44  E-value=0.22  Score=42.55  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=28.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..+|.|||+|.+|..+++.|...|. +++++|.+
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~   60 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSRN   60 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3579999999999999999999997 68888743

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=91.44  E-value=0.91  Score=40.87  Aligned_cols=31  Identities=35%  Similarity=0.508  Sum_probs=26.7

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .+|+|.| .|.+|+.+++.|+..|. +++++|.
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r   33 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC-EEEEEeC
Confidence            3699998 69999999999999996 7888763

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=91.44  E-value=0.18  Score=46.34  Aligned_cols=35  Identities=14%  Similarity=0.139  Sum_probs=30.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...+|+|+|+|++|..++..+...|.++++.+|.+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~  200 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSR  200 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence            46789999999999999999999999889888743

>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}

Probab=91.44  E-value=0.22  Score=44.64  Aligned_cols=44  Identities=23%  Similarity=0.341  Sum_probs=37.8

Q ss_pred             cCCCCCCCChh--HHHHHHHHHHHHHHHhCCCCCchhhhHhhhhcc
Q 020259          235 SGKSFDPDDPE--HMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNI  278 (328)
Q Consensus       235 ~~~~~~~~~~~--~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~  278 (328)
                      .+..|.+|++.  |+++|..++|+++..|+|++.+...++.++.++
T Consensus       230 ~pl~FeKDDd~N~hmdFItAaSNLRA~nY~I~~~dr~~~K~IAG~I  275 (276)
T 1z7l_A          230 YPIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKI  275 (276)
T ss_dssp             CCCCCCSSCTTSSHHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTC-
T ss_pred             CCcceecCCCcccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCc
Confidence            45678999988  999999999999999999999887777776654

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=91.43  E-value=0.21  Score=47.02  Aligned_cols=37  Identities=32%  Similarity=0.513  Sum_probs=33.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      ...|+|||+|..|..+|..|++.|..+++|+|....-
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~   42 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVP   42 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            4689999999999999999999998789999987653

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=91.43  E-value=0.52  Score=43.36  Aligned_cols=34  Identities=29%  Similarity=0.340  Sum_probs=30.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ...+|+|+|+|++|..++..+...|.++++.+|.
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  204 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL  204 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            4678999999999999999988999988888874

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=91.43  E-value=0.48  Score=41.80  Aligned_cols=79  Identities=15%  Similarity=0.198  Sum_probs=50.2

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | +++.|+|.| .||+|.++++.|+..|. ++.+.|...                  ..+.+.+.+.+++...  ++...
T Consensus        26 l-~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~   83 (269)
T 4dmm_A           26 L-TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASS------------------AGAADEVVAAIAAAGG--EAFAV   83 (269)
T ss_dssp             T-TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             C-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCC------------------hHHHHHHHHHHHhcCC--cEEEE
Confidence            5 466777777 68999999999999998 677765321                  1345555666665543  44555


Q ss_pred             ecccCCcc--h-------hhhccCCEEEecC
Q 020259          116 FCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      ..++.+..  .       +.+.+.|++|.+.
T Consensus        84 ~~D~~d~~~v~~~~~~~~~~~g~id~lv~nA  114 (269)
T 4dmm_A           84 KADVSQESEVEALFAAVIERWGRLDVLVNNA  114 (269)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            55555421  1       1234678887763

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=91.40  E-value=0.28  Score=44.42  Aligned_cols=34  Identities=15%  Similarity=0.272  Sum_probs=30.6

Q ss_pred             HHcCCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVGAGG-LGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG~gg-lG~evaknL~l~Gvg~itlvD~   72 (328)
                      | ..++++|||.|+ +|..+++.|...|. .+|+++.
T Consensus       163 l-~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~  197 (300)
T 4a26_A          163 M-AGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHS  197 (300)
T ss_dssp             C-TTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECT
T ss_pred             C-CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence            6 588999999988 79999999999998 7999874

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=91.39  E-value=0.81  Score=40.57  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=28.0

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .| ++.+++|.| .||+|.++++.|+..|. ++.++|.
T Consensus        20 ~l-~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r   55 (288)
T 2x9g_A           20 HM-EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYH   55 (288)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEES
T ss_pred             CC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeC
Confidence            46 577788887 78999999999999997 6888764

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=91.39  E-value=0.65  Score=42.73  Aligned_cols=35  Identities=14%  Similarity=0.136  Sum_probs=26.2

Q ss_pred             cCCcEEEEcCChHHH-HHHHHHHHh-CCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGC-ELLKDLALS-GFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~-evaknL~l~-Gvg~itlvD~d   73 (328)
                      +.-+|.|||+|.+|. ..++.|... |+.-+.++|.+
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~   62 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRR   62 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESS
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence            456899999999998 789999876 54333466643

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=91.34  E-value=0.59  Score=40.68  Aligned_cols=34  Identities=24%  Similarity=0.410  Sum_probs=28.7

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++.+|+|.| .||+|.++++.|+..|. ++.++|.+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   38 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVL   38 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467889998 58999999999999997 68887743

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=91.32  E-value=0.36  Score=43.39  Aligned_cols=33  Identities=24%  Similarity=0.352  Sum_probs=29.8

Q ss_pred             HHcCCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q 020259           37 LQEYARILVVGAGG-LGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        37 Lr~~~~VliiG~gg-lG~evaknL~l~Gvg~itlvD   71 (328)
                      | ..++++|||.|+ +|..++..|...|. .+|+++
T Consensus       158 l-~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h  191 (285)
T 3p2o_A          158 L-EGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCH  191 (285)
T ss_dssp             C-TTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             C-CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEe
Confidence            5 589999999988 79999999999998 699986

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=91.31  E-value=0.77  Score=42.26  Aligned_cols=36  Identities=22%  Similarity=0.294  Sum_probs=31.2

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++...+|+|+|+|++|..++..+...|...+..+|.
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  212 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDI  212 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            434678999999999999999999999987888874

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=91.31  E-value=0.41  Score=44.69  Aligned_cols=81  Identities=17%  Similarity=0.253  Sum_probs=47.9

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCC--eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFK--NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg--~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      .-+|.||| .|-+|.|+++.|...++-  +++++.               +....|+.-+         . ....+....
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~a---------------s~~saG~~~~---------~-~~~~~~~~~   56 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLA---------------SARSAGKSLK---------F-KDQDITIEE   56 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEE---------------CTTTTTCEEE---------E-TTEEEEEEE
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEE---------------ccccCCCcce---------e-cCCCceEee
Confidence            35799999 677899999998886553  444443               2333444321         0 011222211


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                        +   +.+.++++|+|+.|+.....+.+.....
T Consensus        57 --~---~~~~~~~~Dvvf~a~~~~~s~~~a~~~~   85 (366)
T 3pwk_A           57 --T---TETAFEGVDIALFSAGSSTSAKYAPYAV   85 (366)
T ss_dssp             --C---CTTTTTTCSEEEECSCHHHHHHHHHHHH
T ss_pred             --C---CHHHhcCCCEEEECCChHhHHHHHHHHH
Confidence              1   2233578999999998766665555443

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=91.31  E-value=0.55  Score=40.44  Aligned_cols=35  Identities=14%  Similarity=0.293  Sum_probs=29.2

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | ++.+|+|.| .|++|.++++.|+..|. ++.++|.+
T Consensus         4 ~-~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~   39 (251)
T 1zk4_A            4 L-DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRH   39 (251)
T ss_dssp             T-TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             C-CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5 577888887 78999999999999997 68887743

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=91.29  E-value=0.65  Score=41.04  Aligned_cols=77  Identities=13%  Similarity=0.161  Sum_probs=49.5

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++.+++|.| .||+|.++++.|+..|. ++.++|..                    .+.+..++.+.+..  .++...
T Consensus        29 l-~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~--------------------~~~~~~~~~~~~~~--~~~~~~   84 (273)
T 3uf0_A           29 L-AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRT--------------------DGVKEVADEIADGG--GSAEAV   84 (273)
T ss_dssp             C-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS--------------------THHHHHHHHHHTTT--CEEEEE
T ss_pred             C-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCH--------------------HHHHHHHHHHHhcC--CcEEEE
Confidence            6 577888888 68999999999999998 68887621                    12344445555443  345555


Q ss_pred             ecccCCcc--hh------hhccCCEEEecC
Q 020259          116 FCRIEDKD--IS------FYNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~~------~~~~~dvVi~~~  137 (328)
                      ..++.+..  ..      -+.+.|+||.+.
T Consensus        85 ~~Dv~d~~~v~~~~~~~~~~g~iD~lv~nA  114 (273)
T 3uf0_A           85 VADLADLEGAANVAEELAATRRVDVLVNNA  114 (273)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EecCCCHHHHHHHHHHHHhcCCCcEEEECC
Confidence            55655421  11      124678887763

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=91.28  E-value=0.71  Score=40.23  Aligned_cols=77  Identities=16%  Similarity=0.219  Sum_probs=50.2

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++++++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+++..+  ++..+..
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~--~~~~~~~   61 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHL-------------------DTLRVVAQEAQSLGG--QCVPVVC   61 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHSS--EEEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHHcCC--ceEEEEC
Confidence            466777777 78999999999999997 688876432                   234455555655543  4555556


Q ss_pred             ccCCcc--h----h----hhccCCEEEecC
Q 020259          118 RIEDKD--I----S----FYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~----~----~~~~~dvVi~~~  137 (328)
                      ++.+..  .    .    .+.+.|++|.+.
T Consensus        62 Dv~~~~~v~~~~~~~~~~~~g~id~lvnnA   91 (260)
T 2qq5_A           62 DSSQESEVRSLFEQVDREQQGRLDVLVNNA   91 (260)
T ss_dssp             CTTSHHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCceEEEECC
Confidence            665421  1    1    145678888776

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=91.26  E-value=0.54  Score=41.67  Aligned_cols=78  Identities=19%  Similarity=0.156  Sum_probs=48.8

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++.+|+|.| .|++|.++++.|+..|. ++.+++.+.                   .+.+.+.+.+++..+  ++...
T Consensus        42 l-~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~--~~~~~   98 (285)
T 2c07_A           42 G-ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQ-------------------KSCDSVVDEIKSFGY--ESSGY   98 (285)
T ss_dssp             C-SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSH-------------------HHHHHHHHHHHTTTC--CEEEE
T ss_pred             C-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCH-------------------HHHHHHHHHHHhcCC--ceeEE
Confidence            5 467899997 78999999999999997 677765321                   234444555554433  34445


Q ss_pred             ecccCCcc--hhh-------hccCCEEEecC
Q 020259          116 FCRIEDKD--ISF-------YNDFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~~~-------~~~~dvVi~~~  137 (328)
                      ..++.+..  .+.       +.+.|+||.+.
T Consensus        99 ~~Dl~d~~~v~~~~~~~~~~~~~id~li~~A  129 (285)
T 2c07_A           99 AGDVSKKEEISEVINKILTEHKNVDILVNNA  129 (285)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHCSCCCEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            55554421  111       24678887764

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=91.26  E-value=0.7  Score=42.07  Aligned_cols=83  Identities=13%  Similarity=0.119  Sum_probs=53.4

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +++.|+|.| .||+|.++++.|+..|. ++.+.+.+..              +....+.+.+.+.+.+..+  ++.....
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~--------------~r~~~~~~~l~~~~~~~~~--~~~~~~~   66 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIV--------------GRNASNVEAIAGFARDNDV--DLRTLEL   66 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTT--------------TTTHHHHHHHHHHHHHHTC--CEEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCccc--------------ccCHHHHHHHHHHHHhcCC--cEEEEEe
Confidence            356778887 68999999999999997 5666553321              1223456667777766544  4555556


Q ss_pred             ccCCcc--hhh-------hccCCEEEecCC
Q 020259          118 RIEDKD--ISF-------YNDFNIIVLGLD  138 (328)
Q Consensus       118 ~~~~~~--~~~-------~~~~dvVi~~~d  138 (328)
                      ++.+..  .+.       +.+.|+||.+..
T Consensus        67 Dvtd~~~v~~~~~~~~~~~g~iD~lVnnAG   96 (324)
T 3u9l_A           67 DVQSQVSVDRAIDQIIGEDGRIDVLIHNAG   96 (324)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             ecCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            665421  222       347899988744

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=91.26  E-value=0.44  Score=41.94  Aligned_cols=80  Identities=19%  Similarity=0.233  Sum_probs=51.6

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      +| ++++++|.| .||+|.++++.|+..|. ++.+.|...                  ..+.+.+.+.+++..+  ++..
T Consensus        15 ~l-~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~   72 (270)
T 3is3_A           15 RL-DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANS------------------TKDAEKVVSEIKALGS--DAIA   72 (270)
T ss_dssp             CC-TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTC--CEEE
T ss_pred             Cc-CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCC------------------HHHHHHHHHHHHhcCC--cEEE
Confidence            36 577788887 67999999999999998 677765321                  1345566666666544  4445


Q ss_pred             EecccCCcc--h-------hhhccCCEEEecC
Q 020259          115 HFCRIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      +..++.+..  .       +.+.+.|++|.+.
T Consensus        73 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA  104 (270)
T 3is3_A           73 IKADIRQVPEIVKLFDQAVAHFGHLDIAVSNS  104 (270)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            555555421  1       2234678888763

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=91.26  E-value=0.23  Score=43.58  Aligned_cols=34  Identities=35%  Similarity=0.451  Sum_probs=28.4

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|.| .|++|.++++.|+..|. ++.+.|.+.
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~~   37 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSP   37 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecCC
Confidence            35789998 79999999999999996 788887543

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=91.25  E-value=0.27  Score=43.83  Aligned_cols=37  Identities=22%  Similarity=0.380  Sum_probs=30.7

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .| ++.+|+|.| .||+|.++++.|+..|. ++.++|.+.
T Consensus        13 ~l-~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~   50 (291)
T 3rd5_A           13 SF-AQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDT   50 (291)
T ss_dssp             CC-TTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CC-CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCH
Confidence            35 578888988 68999999999999997 788887543

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=91.25  E-value=0.92  Score=38.78  Aligned_cols=75  Identities=15%  Similarity=0.239  Sum_probs=46.9

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEE-eCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVI-DMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlv-D~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      .+|+|.| .|++|.++++.|+..|. ++.++ +.+                   ..+.+.+.+.+++..+  ++.....+
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~~~D   59 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARS-------------------AKAAEEVSKQIEAYGG--QAITFGGD   59 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC-------------------HHHHHHHHHHHHHHTC--EEEEEECC
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCC-------------------HHHHHHHHHHHHhcCC--cEEEEeCC
Confidence            4677777 78999999999999997 55553 321                   1344555556665543  45555556


Q ss_pred             cCCcc--hhh-------hccCCEEEecC
Q 020259          119 IEDKD--ISF-------YNDFNIIVLGL  137 (328)
Q Consensus       119 ~~~~~--~~~-------~~~~dvVi~~~  137 (328)
                      +.+..  ...       +.+.|+||.+.
T Consensus        60 ~~~~~~~~~~~~~~~~~~g~id~li~~A   87 (244)
T 1edo_A           60 VSKEADVEAMMKTAIDAWGTIDVVVNNA   87 (244)
T ss_dssp             TTSHHHHHHHHHHHHHHSSCCSEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            55421  222       23689888764

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=91.25  E-value=0.71  Score=42.38  Aligned_cols=33  Identities=12%  Similarity=0.132  Sum_probs=25.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALS-GFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~-Gvg~itlvD~   72 (328)
                      ..+|.|||+|.+|...+++|... |+.-+.++|.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~   38 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSR   38 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECS
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECC
Confidence            45899999999999999999876 5533446564

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=91.24  E-value=0.33  Score=43.44  Aligned_cols=35  Identities=23%  Similarity=0.339  Sum_probs=29.6

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +| ++++++|.| .||+|.++++.|+..|. ++.++|.
T Consensus        46 ~l-~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~   81 (294)
T 3r3s_A           46 RL-KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYL   81 (294)
T ss_dssp             TT-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CC-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            47 578899998 68999999999999998 6777663

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=91.19  E-value=0.5  Score=41.45  Aligned_cols=40  Identities=10%  Similarity=0.207  Sum_probs=32.1

Q ss_pred             HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      -++ ++++|+|.| .||+|.++++.|+..|. ++.++|.+.-.
T Consensus        24 ~~~-~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~   64 (260)
T 3un1_A           24 MRN-QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKP   64 (260)
T ss_dssp             HHT-TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCC
T ss_pred             hCc-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhh
Confidence            346 577788887 68999999999999998 78888866433

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=91.19  E-value=0.18  Score=46.40  Aligned_cols=36  Identities=28%  Similarity=0.321  Sum_probs=31.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      ...|+|||+|..|..+|..|++.|. +++|+|.+..-
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~-~V~vie~~~~~   38 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFDPP   38 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCC
Confidence            4679999999999999999999997 79999977543

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=91.18  E-value=0.21  Score=45.95  Aligned_cols=36  Identities=31%  Similarity=0.481  Sum_probs=32.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      ..+|+|||+|..|+.+|..|++.|. +++|+|...+.
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~-~V~lle~~~~~   40 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGE-EVTVIEKRFIG   40 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence            5689999999999999999999998 69999987543

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=91.15  E-value=0.22  Score=45.19  Aligned_cols=31  Identities=19%  Similarity=0.255  Sum_probs=27.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ..+|+|||+|++|+.++..|. +|. .+++++.
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g~-~V~~~~r   32 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LYH-DVTVVTR   32 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cCC-ceEEEEC
Confidence            468999999999999999999 885 7888763

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.09  E-value=0.62  Score=40.68  Aligned_cols=36  Identities=17%  Similarity=0.386  Sum_probs=30.3

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +| ++++++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus         5 ~l-~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   41 (255)
T 4eso_A            5 NY-QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRN   41 (255)
T ss_dssp             TT-TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CC-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35 577888888 68999999999999998 78888753

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=91.05  E-value=0.26  Score=45.39  Aligned_cols=79  Identities=10%  Similarity=0.108  Sum_probs=53.2

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      ..| +..+|.|||+|.+|..++++|...|+ +++++|.+.                   .++.   +...+.  .+.+  
T Consensus        12 ~~l-~~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~-------------------~~~~---~~a~~~--G~~~--   63 (338)
T 1np3_A           12 SII-QGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSG-------------------SATV---AKAEAH--GLKV--   63 (338)
T ss_dssp             HHH-HTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTT-------------------CHHH---HHHHHT--TCEE--
T ss_pred             chh-cCCEEEEECchHHHHHHHHHHHHCcC-EEEEEECCh-------------------HHHH---HHHHHC--CCEE--
Confidence            457 58899999999999999999999997 677776432                   1111   112222  2221  


Q ss_pred             EecccCCcchhhhccCCEEEecCCCHHHHHHHH
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLDSIEARSYIN  147 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~  147 (328)
                      .      ...+.++++|+||.|+........+.
T Consensus        64 ~------~~~e~~~~aDvVilavp~~~~~~v~~   90 (338)
T 1np3_A           64 A------DVKTAVAAADVVMILTPDEFQGRLYK   90 (338)
T ss_dssp             E------CHHHHHHTCSEEEECSCHHHHHHHHH
T ss_pred             c------cHHHHHhcCCEEEEeCCcHHHHHHHH
Confidence            1      23456789999999988766655554

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=91.03  E-value=1.2  Score=39.93  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=28.2

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCC-CeEEEEeCC
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGF-KNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gv-g~itlvD~d   73 (328)
                      +.+|+|.| .|++|+.+++.|+..|- -+++++|..
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~   38 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKL   38 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence            45799999 69999999999999983 378887753

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=91.03  E-value=0.6  Score=41.42  Aligned_cols=36  Identities=31%  Similarity=0.487  Sum_probs=29.1

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .| +++.++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus        26 ~l-~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~   62 (277)
T 3gvc_A           26 DL-AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADID   62 (277)
T ss_dssp             -C-TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CC-CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46 567778877 78999999999999998 78888743

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=91.02  E-value=0.36  Score=44.46  Aligned_cols=81  Identities=15%  Similarity=0.182  Sum_probs=47.3

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCe--EEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKN--LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~--itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      ..+|.|+| .|-+|.++++.|...+...  ++.+-+               ..+.|+.-.         ++ ...+....
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s---------------~~~~G~~~~---------~~-~~~i~~~~   57 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLAS---------------ERSEGKTYR---------FN-GKTVRVQN   57 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEEC---------------TTTTTCEEE---------ET-TEEEEEEE
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEEC---------------CCCCCCcee---------ec-CceeEEec
Confidence            35799999 8999999999998875443  333321               122333211         11 11222221


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                        .   +.+.++++|+|+.|+.....+.+...+.
T Consensus        58 --~---~~~~~~~vDvVf~a~g~~~s~~~a~~~~   86 (336)
T 2r00_A           58 --V---EEFDWSQVHIALFSAGGELSAKWAPIAA   86 (336)
T ss_dssp             --G---GGCCGGGCSEEEECSCHHHHHHHHHHHH
T ss_pred             --C---ChHHhcCCCEEEECCCchHHHHHHHHHH
Confidence              1   1224578999999998766665554443

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=91.01  E-value=0.24  Score=46.21  Aligned_cols=38  Identities=24%  Similarity=0.229  Sum_probs=31.6

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +.. +..+|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus        19 ~~~-~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~   56 (407)
T 3rp8_A           19 YFQ-GHMKAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVK   56 (407)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             cCC-CCCEEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            344 57889999999999999999999998 799999764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=91.01  E-value=1  Score=39.22  Aligned_cols=33  Identities=21%  Similarity=0.278  Sum_probs=27.4

Q ss_pred             cCCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAG---GLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~g---glG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.+++|.|++   |+|.++++.|+..|. ++.++|.
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r   41 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYA   41 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecC
Confidence            46789999964   499999999999998 6777764

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=91.00  E-value=0.39  Score=43.53  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=29.4

Q ss_pred             HHcCCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q 020259           37 LQEYARILVVGAGG-LGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        37 Lr~~~~VliiG~gg-lG~evaknL~l~Gvg~itlvD   71 (328)
                      + ..++|+|||.|. +|..+++.|...|. .+|+++
T Consensus       163 l-~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~h  196 (301)
T 1a4i_A          163 I-AGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCH  196 (301)
T ss_dssp             C-TTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             C-CCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEE
Confidence            5 588999999995 79999999999996 799986

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=90.98  E-value=0.83  Score=41.78  Aligned_cols=80  Identities=14%  Similarity=0.168  Sum_probs=49.0

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHhCCC------eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh-CCCcE
Q 020259           40 YARILVVGA-GGLGCELLKDLALSGFK------NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER-VSGVN  111 (328)
Q Consensus        40 ~~~VliiG~-gglG~evaknL~l~Gvg------~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l-np~v~  111 (328)
                      ..||+|+|+ |.+|+.++..|+..|..      ++.++|.+.=      .         ...|++..+..|... .|.. 
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~------~---------~~~~~~g~~~dl~~~~~~~~-   68 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNE------K---------AQKALQGVMMEIDDCAFPLL-   68 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCH------H---------HHHHHHHHHHHHHTTTCTTE-
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCc------c---------ccccchhhHHHHhhhccccc-
Confidence            358999997 99999999999998873      7888874300      0         013444444455542 2322 


Q ss_pred             EEEEecccCCcchhhhccCCEEEecCC
Q 020259          112 IVPHFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       112 v~~~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      ....   ......+.++++|+||.+..
T Consensus        69 ~~i~---~~~~~~~al~~aD~Vi~~ag   92 (329)
T 1b8p_A           69 AGMT---AHADPMTAFKDADVALLVGA   92 (329)
T ss_dssp             EEEE---EESSHHHHTTTCSEEEECCC
T ss_pred             CcEE---EecCcHHHhCCCCEEEEeCC
Confidence            1111   11223566889999987643

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=90.98  E-value=0.15  Score=46.75  Aligned_cols=35  Identities=17%  Similarity=0.298  Sum_probs=31.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      ...|+|||+|.+|+.+|..|++.|. +++|+|....
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~-~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGL-NVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTC-CEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence            4679999999999999999999998 7999997654

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=90.93  E-value=1.1  Score=40.07  Aligned_cols=76  Identities=14%  Similarity=0.242  Sum_probs=47.9

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..+|+|.|+ |.+|..+++.|...|. ++++++.+.               +   .+++.+ +.+..  +.++  ....+
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~---------------~---~~~~~~-~~l~~--~~v~--~v~~D   66 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPN---------------S---SKTTLL-DEFQS--LGAI--IVKGE   66 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTT---------------C---SCHHHH-HHHHH--TTCE--EEECC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCC---------------C---chhhHH-HHhhc--CCCE--EEEec
Confidence            458999995 9999999999999995 677765321               0   122221 12222  3444  34455


Q ss_pred             cCCc--chhhhccCCEEEecCCC
Q 020259          119 IEDK--DISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~--~~~~~~~~dvVi~~~d~  139 (328)
                      +.+.  -...++++|+||.+...
T Consensus        67 l~d~~~l~~a~~~~d~vi~~a~~   89 (318)
T 2r6j_A           67 LDEHEKLVELMKKVDVVISALAF   89 (318)
T ss_dssp             TTCHHHHHHHHTTCSEEEECCCG
T ss_pred             CCCHHHHHHHHcCCCEEEECCch
Confidence            5442  24567889999988653

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=90.93  E-value=1.1  Score=43.38  Aligned_cols=83  Identities=16%  Similarity=0.255  Sum_probs=54.7

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      ++.+.+|+|.| .|++|.++++.|+..|..++.+++...-.                ..+++.+.+.+.+..  .++...
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~----------------~~~~~~l~~~l~~~g--~~v~~~  284 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPD----------------ADGAGELVAELEALG--ARTTVA  284 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGG----------------STTHHHHHHHHHHTT--CEEEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCC----------------cHHHHHHHHHHHhcC--CEEEEE
Confidence            43577888887 89999999999999999889998754311                123455556666543  456666


Q ss_pred             ecccCCcc--hhhhcc------CCEEEecC
Q 020259          116 FCRIEDKD--ISFYND------FNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~~~~~~------~dvVi~~~  137 (328)
                      ..++.+..  ...++.      .|+||.+.
T Consensus       285 ~~Dv~d~~~v~~~~~~i~~~g~ld~VIh~A  314 (486)
T 2fr1_A          285 ACDVTDRESVRELLGGIGDDVPLSAVFHAA  314 (486)
T ss_dssp             ECCTTCHHHHHHHHHTSCTTSCEEEEEECC
T ss_pred             EeCCCCHHHHHHHHHHHHhcCCCcEEEECC
Confidence            66665432  233333      48887763

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=90.91  E-value=0.9  Score=43.94  Aligned_cols=75  Identities=16%  Similarity=0.221  Sum_probs=46.4

Q ss_pred             CCcEEEEcCChH--HHHHHHHHHHh-C--CCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHH----hhCCCc
Q 020259           40 YARILVVGAGGL--GCELLKDLALS-G--FKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVM----ERVSGV  110 (328)
Q Consensus        40 ~~~VliiG~ggl--G~evaknL~l~-G--vg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~----~lnp~v  110 (328)
                      ..+|.|||+|++  |..++..|+.. +  ..+++|+|-+.                   .|++.+.....    ......
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~-------------------e~l~~~~~~~~~~l~~~~~~~   63 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE-------------------ERLDAILTIAKKYVEEVGADL   63 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH-------------------HHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCH-------------------HHHHHHHHHHHHHhccCCCCc
Confidence            568999999996  57678888743 2  35899998443                   23333332222    233344


Q ss_pred             EEEEEecccCCcchhhhccCCEEEecCC
Q 020259          111 NIVPHFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       111 ~v~~~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      ++...+     ...+-++++|+||.++.
T Consensus        64 ~I~~tt-----D~~eal~dAD~VIiaag   86 (480)
T 1obb_A           64 KFEKTM-----NLDDVIIDADFVINTAM   86 (480)
T ss_dssp             EEEEES-----CHHHHHTTCSEEEECCC
T ss_pred             EEEEEC-----CHHHHhCCCCEEEECCC
Confidence            555421     12355789999999874

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=90.89  E-value=0.23  Score=46.46  Aligned_cols=36  Identities=28%  Similarity=0.441  Sum_probs=32.5

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+ ...+|+|+|+|++|..+++.+...|. +++++|.+
T Consensus       165 ~l-~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~  200 (377)
T 2vhw_A          165 GV-EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDIN  200 (377)
T ss_dssp             TB-CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            47 68999999999999999999999998 89998843

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=90.89  E-value=0.42  Score=42.00  Aligned_cols=30  Identities=30%  Similarity=0.354  Sum_probs=25.6

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHh--CCCeEEEEeC
Q 020259           42 RILVVGA-GGLGCELLKDLALS--GFKNLEVIDM   72 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~--Gvg~itlvD~   72 (328)
                      +|+|.|+ |.+|+.+++.|...  |. ++++++.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r   34 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVR   34 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEES
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEc
Confidence            6899995 99999999999988  75 6887764

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=90.89  E-value=0.71  Score=40.24  Aligned_cols=33  Identities=21%  Similarity=0.359  Sum_probs=27.0

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++++|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   36 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGF   36 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeC
Confidence            356777777 68999999999999997 6777763

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=90.85  E-value=0.23  Score=45.99  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=30.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +.+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   35 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT   35 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            4689999999999999999999998 799999654

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=90.84  E-value=0.4  Score=42.19  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=28.7

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      | ++.+|+|.| .|++|.++++.|+..|. ++.++|.
T Consensus        32 l-~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r   66 (279)
T 3ctm_A           32 L-KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYN   66 (279)
T ss_dssp             C-TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEES
T ss_pred             C-CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            6 577788887 78999999999999997 6888774

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=90.84  E-value=0.55  Score=41.47  Aligned_cols=76  Identities=17%  Similarity=0.138  Sum_probs=47.2

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +++.++|-| .+|+|.++|+.|+..|. ++.+.|.+.                   .+.+.+++.+++...  ++..+..
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~-------------------~~~~~~~~~l~~~g~--~~~~~~~   65 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRA-------------------TLLAESVDTLTRKGY--DAHGVAF   65 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCH-------------------HHHHHHHHHHHHTTC--CEEECCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHhcCC--cEEEEEe
Confidence            455555555 88999999999999998 788876322                   345555566665433  4445555


Q ss_pred             ccCCcc---------hhhhccCCEEEec
Q 020259          118 RIEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       118 ~~~~~~---------~~~~~~~dvVi~~  136 (328)
                      ++.+..         .+.+.+.|++|++
T Consensus        66 Dv~~~~~v~~~~~~~~~~~G~iDiLVNN   93 (255)
T 4g81_D           66 DVTDELAIEAAFSKLDAEGIHVDILINN   93 (255)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred             eCCCHHHHHHHHHHHHHHCCCCcEEEEC
Confidence            554421         2234456777765

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=90.83  E-value=0.16  Score=48.67  Aligned_cols=40  Identities=23%  Similarity=0.408  Sum_probs=36.1

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCC--CeEEEEeCCcc
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGF--KNLEVIDMDRI   75 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gv--g~itlvD~d~v   75 (328)
                      ++| ++.+|++.|+|+.|..+++.|+..|+  ++|.++|..=+
T Consensus       215 k~l-~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gl  256 (487)
T 3nv9_A          215 KDI-HECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGS  256 (487)
T ss_dssp             CCG-GGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEE
T ss_pred             CCh-hhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEecccc
Confidence            558 68999999999999999999999999  89999997643

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=90.82  E-value=0.6  Score=41.83  Aligned_cols=80  Identities=11%  Similarity=0.235  Sum_probs=49.5

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC-CcEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS-GVNIVP  114 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp-~v~v~~  114 (328)
                      | ++.+++|.| .||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+... ..++..
T Consensus        24 l-~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~~~   82 (297)
T 1xhl_A           24 F-SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNE-------------------DRLEETKQQILKAGVPAEKINA   82 (297)
T ss_dssp             C-TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTCCGGGEEE
T ss_pred             C-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhcCCCCceEEE
Confidence            5 466777777 78999999999999997 688876432                   234444555554322 113455


Q ss_pred             EecccCCcc--hh-------hhccCCEEEecC
Q 020259          115 HFCRIEDKD--IS-------FYNDFNIIVLGL  137 (328)
Q Consensus       115 ~~~~~~~~~--~~-------~~~~~dvVi~~~  137 (328)
                      ...++.+..  ..       .+.+.|+||.+.
T Consensus        83 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA  114 (297)
T 1xhl_A           83 VVADVTEASGQDDIINTTLAKFGKIDILVNNA  114 (297)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EecCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            555555421  11       234678887763

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=90.82  E-value=0.8  Score=39.69  Aligned_cols=33  Identities=27%  Similarity=0.257  Sum_probs=27.6

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++++++|.| .||+|.++++.|+..|. ++.++|.
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r   41 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTAT   41 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            466788887 68999999999999998 6777764

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=90.79  E-value=0.63  Score=42.56  Aligned_cols=32  Identities=25%  Similarity=0.335  Sum_probs=23.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeC
Q 020259           41 ARILVVGAGGLGCELLKDLALS-GFKNLEVIDM   72 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~-Gvg~itlvD~   72 (328)
                      -||.|||+|.+|...++.|... |+.-+.++|.
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~   35 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDV   35 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECS
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECC
Confidence            4799999999999999999874 4422335553

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=90.78  E-value=0.54  Score=44.12  Aligned_cols=34  Identities=15%  Similarity=0.287  Sum_probs=30.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ...+|+|+|+|++|..++..+...|..++..+|.
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  246 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEP  246 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            4568999999999999999999999988888873

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=90.78  E-value=0.39  Score=41.88  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=26.9

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +..+++|.| .||+|.++++.|+..|. ++.+++.
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~   39 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYH   39 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcC
Confidence            356788887 68999999999999998 6777653

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=90.72  E-value=0.61  Score=42.46  Aligned_cols=33  Identities=9%  Similarity=-0.010  Sum_probs=24.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALS-GFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~-Gvg~itlvD~   72 (328)
                      ..+|.|||+|.+|...++.|... ++.-+.++|.
T Consensus         5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~   38 (330)
T 3e9m_A            5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASR   38 (330)
T ss_dssp             CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCS
T ss_pred             eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeC
Confidence            45899999999999999999885 4322235553

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=90.71  E-value=1.2  Score=40.13  Aligned_cols=35  Identities=29%  Similarity=0.456  Sum_probs=28.9

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCC------CeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGF------KNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gv------g~itlvD~d   73 (328)
                      +..+|+|.| .|++|+.+++.|+..|.      .+++++|.+
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~   54 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVF   54 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESS
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEcc
Confidence            456799999 69999999999999993      478887753

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=90.70  E-value=0.21  Score=47.37  Aligned_cols=34  Identities=29%  Similarity=0.275  Sum_probs=30.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~-~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence            4789999999999999999999998 899999765

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=90.68  E-value=0.73  Score=42.50  Aligned_cols=34  Identities=32%  Similarity=0.479  Sum_probs=25.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHH-H-hCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLA-L-SGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~-l-~Gvg~itlvD~   72 (328)
                      +.-+|.|||+|.+|...++.|. . .|+.-+.++|.
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~   57 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDI   57 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECS
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeC
Confidence            4568999999999999999998 4 35533345653

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=90.67  E-value=1.1  Score=43.59  Aligned_cols=83  Identities=23%  Similarity=0.369  Sum_probs=56.2

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      ++.+.+|+|.| .|++|.++++.|+..|..++.+++...-.                ..+++.+.+.+.+.  ..++...
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~----------------~~~~~~l~~~l~~~--g~~v~~~  317 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPE----------------APGAAELAEELRGH--GCEVVHA  317 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGG----------------STTHHHHHHHHHTT--TCEEEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcc----------------cHHHHHHHHHHHhc--CCEEEEE
Confidence            33567888887 89999999999999999889988643211                12344555666654  4566666


Q ss_pred             ecccCCcc--hhhhc--cCCEEEecC
Q 020259          116 FCRIEDKD--ISFYN--DFNIIVLGL  137 (328)
Q Consensus       116 ~~~~~~~~--~~~~~--~~dvVi~~~  137 (328)
                      ..++.+..  ...++  ..|+||.+.
T Consensus       318 ~~Dvtd~~~v~~~~~~~~ld~VVh~A  343 (511)
T 2z5l_A          318 ACDVAERDALAALVTAYPPNAVFHTA  343 (511)
T ss_dssp             ECCSSCHHHHHHHHHHSCCSEEEECC
T ss_pred             EeCCCCHHHHHHHHhcCCCcEEEECC
Confidence            67766532  34444  489998874

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=90.66  E-value=0.83  Score=40.20  Aligned_cols=35  Identities=23%  Similarity=0.444  Sum_probs=29.5

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | ++.+++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus         7 l-~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   42 (270)
T 1yde_A            7 Y-AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKD   42 (270)
T ss_dssp             T-TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             C-CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5 577888887 78999999999999997 68887744

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=90.64  E-value=0.93  Score=39.87  Aligned_cols=78  Identities=17%  Similarity=0.259  Sum_probs=47.6

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +++.++|.| .||+|.++++.|+..|. ++.+.+..                  ...+.+.+++.+++...  ++.....
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~   84 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAG------------------KAAAAEEVAGKIEAAGG--KALTAQA   84 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESS------------------CSHHHHHHHHHHHHTTC--CEEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCC------------------CHHHHHHHHHHHHhcCC--eEEEEEc
Confidence            467788887 68999999999999998 56665421                  12345555666665443  3444445


Q ss_pred             ccCCcc--h-------hhhccCCEEEecC
Q 020259          118 RIEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      ++.+..  .       +.+.+.|++|.+.
T Consensus        85 Dl~~~~~v~~~~~~~~~~~g~iD~lvnnA  113 (267)
T 3u5t_A           85 DVSDPAAVRRLFATAEEAFGGVDVLVNNA  113 (267)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            554421  1       1234677777664

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=90.63  E-value=0.38  Score=44.66  Aligned_cols=34  Identities=18%  Similarity=0.321  Sum_probs=30.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ...+|+|+|+|++|..++..+...|.++++.+|.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~  226 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDI  226 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            4678999999999999999999999988988873

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=90.61  E-value=1  Score=40.91  Aligned_cols=35  Identities=17%  Similarity=0.193  Sum_probs=26.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeE-EEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNL-EVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~i-tlvD~d~   74 (328)
                      .-+|.|||+|.+|...++.|...+--++ .++|.+.
T Consensus         5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~   40 (329)
T 3evn_A            5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTL   40 (329)
T ss_dssp             CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCS
T ss_pred             ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCH
Confidence            4589999999999999999987753233 4666554

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=90.59  E-value=0.26  Score=45.15  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|.|||+|-+|+-+|..++.+|+ .++++|.+.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~   39 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEP   39 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            4689999999999999999999999 799999653

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=90.59  E-value=0.59  Score=41.07  Aligned_cols=77  Identities=16%  Similarity=0.215  Sum_probs=48.3

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ...|+|.| .||+|.++++.|+..|. ++.+.+..                  ...+.+.+.+.+.+..+  ++.....+
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~D   84 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAA------------------NREAADAVVAAITESGG--EAVAIPGD   84 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESS------------------CHHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCC------------------ChhHHHHHHHHHHhcCC--cEEEEEcC
Confidence            45566666 78999999999999998 56554311                  12345566666666543  45555566


Q ss_pred             cCCcc--h-------hhhccCCEEEecC
Q 020259          119 IEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       119 ~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      +.+..  .       +.+.+.|+||.+.
T Consensus        85 l~~~~~v~~~~~~~~~~~g~id~li~nA  112 (272)
T 4e3z_A           85 VGNAADIAAMFSAVDRQFGRLDGLVNNA  112 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCEEEECC
Confidence            65421  1       2234678888763

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=90.57  E-value=0.2  Score=46.09  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=32.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      ...|+|||+|..|..+|..|+..|. +++|+|.+.+.
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~~~~   52 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   52 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCCC
Confidence            4689999999999999999999998 79999977543

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=90.57  E-value=0.25  Score=45.08  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=31.0

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .| ...+|.|||+|.+|..+|+.|...|. +++.+|.
T Consensus       139 ~l-~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~  173 (313)
T 2ekl_A          139 EL-AGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDI  173 (313)
T ss_dssp             CC-TTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CC-CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECC
Confidence            47 58999999999999999999999997 6888773

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=90.56  E-value=1.3  Score=39.86  Aligned_cols=31  Identities=26%  Similarity=0.514  Sum_probs=26.3

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHh-CCCeEEEEeCC
Q 020259           42 RILVVGA-GGLGCELLKDLALS-GFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~-Gvg~itlvD~d   73 (328)
                      +|+|.|+ |.+|+++++.|... |. +++++|..
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~   34 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHY-EVYGLDIG   34 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESC
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            6999996 99999999999998 75 78887753

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=90.56  E-value=0.3  Score=43.00  Aligned_cols=31  Identities=26%  Similarity=0.561  Sum_probs=27.2

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .+|+|.| .|.+|+.+++.|...|. +++.++.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r   37 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY-DIYPFDK   37 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE-EEEEECT
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC-EEEEecc
Confidence            3799999 59999999999999996 7888875

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=90.52  E-value=0.34  Score=45.00  Aligned_cols=36  Identities=14%  Similarity=0.253  Sum_probs=31.3

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++...+|+|+|+|++|..++..+...|.+++..+|.
T Consensus       180 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  215 (370)
T 4ej6_A          180 IKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTR  215 (370)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            435788999999999999999999999988888873

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=90.51  E-value=1.1  Score=40.02  Aligned_cols=33  Identities=24%  Similarity=0.535  Sum_probs=24.4

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHH-hCCCeEE-EEeCC
Q 020259           40 YARILVVGA-GGLGCELLKDLAL-SGFKNLE-VIDMD   73 (328)
Q Consensus        40 ~~~VliiG~-gglG~evaknL~l-~Gvg~it-lvD~d   73 (328)
                      +-||.|+|+ |.+|..+++.+.. .|+ +++ ++|.+
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~-elva~~d~~   40 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGV-QLGAALERE   40 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTE-ECCCEECCT
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecC
Confidence            458999999 9999999999874 444 333 55643

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=90.51  E-value=0.27  Score=43.24  Aligned_cols=34  Identities=15%  Similarity=0.234  Sum_probs=30.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|||.|..|..+|..|.+.|. +++|+|...
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~   35 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARK-NILLVDAGE   35 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            4689999999999999999999997 899999653

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=90.44  E-value=0.88  Score=39.19  Aligned_cols=33  Identities=18%  Similarity=0.282  Sum_probs=28.5

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.+|+|.| .||+|.++++.|+..|. ++.++|.
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r   46 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLGS-KVIISGS   46 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcC
Confidence            478888888 78999999999999997 6888774

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=90.44  E-value=0.78  Score=43.12  Aligned_cols=29  Identities=24%  Similarity=0.296  Sum_probs=24.5

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           42 RILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      +|+|.| .|++|+++++.|...|. ++++++
T Consensus        71 ~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~  100 (427)
T 4f6c_A           71 NTLLTGATGFLGAYLIEALQGYSH-RIYCFI  100 (427)
T ss_dssp             EEEEECTTSHHHHHHHHHHTTTEE-EEEEEE
T ss_pred             EEEEecCCcHHHHHHHHHHHcCCC-EEEEEE
Confidence            799999 59999999999987776 677765

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=90.43  E-value=1.1  Score=40.64  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=24.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeC
Q 020259           41 ARILVVGAGGLGCELLKDLALS-GFKNLEVIDM   72 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~-Gvg~itlvD~   72 (328)
                      .+|.|||+|.+|...++.|... |+.-+.++|.
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~   36 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADA   36 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECC
Confidence            5799999999999999999875 5433335664

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=90.42  E-value=0.57  Score=42.73  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=24.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHH-H-hCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLA-L-SGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~-l-~Gvg~itlvD~   72 (328)
                      ..+|.|||+|.+|...++.|. . .|+.-+.++|.
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~   42 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACAL   42 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecC
Confidence            457999999999999999987 4 35533455663

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=90.42  E-value=0.86  Score=41.77  Aligned_cols=32  Identities=22%  Similarity=0.208  Sum_probs=27.9

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ...+|+|+|+|++|..++..+...|.. +..+|
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~  199 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTA  199 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEc
Confidence            467899999999999999999899985 77776

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=90.39  E-value=0.28  Score=45.61  Aligned_cols=35  Identities=20%  Similarity=0.449  Sum_probs=31.8

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      + ...+|+|+|+|++|..+++.+...|. +++++|.+
T Consensus       165 l-~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~  199 (361)
T 1pjc_A          165 V-KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDIN  199 (361)
T ss_dssp             B-CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             C-CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            6 57899999999999999999999999 89998843

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=90.35  E-value=0.4  Score=44.36  Aligned_cols=34  Identities=21%  Similarity=0.339  Sum_probs=29.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ...+|+|+|+|++|..++..+...|..+++.+|.
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~  223 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI  223 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            3568999999999999999988899988888873

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=90.33  E-value=0.27  Score=44.72  Aligned_cols=35  Identities=29%  Similarity=0.407  Sum_probs=31.2

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .| ...+|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       139 ~l-~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~  173 (307)
T 1wwk_A          139 EL-EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDP  173 (307)
T ss_dssp             CC-TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             cc-CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            57 68999999999999999999999997 6888774

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=90.32  E-value=0.96  Score=39.25  Aligned_cols=32  Identities=28%  Similarity=0.398  Sum_probs=27.0

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ++++++|.| .||+|.++++.|+..|. ++.++|
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~   35 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNG   35 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            467788888 58999999999999997 677765

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=90.31  E-value=0.35  Score=43.54  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=29.2

Q ss_pred             HHcCCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q 020259           37 LQEYARILVVGAGG-LGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        37 Lr~~~~VliiG~gg-lG~evaknL~l~Gvg~itlvD   71 (328)
                      + ..++|+|||.|. +|..+++.|...|. .+|+++
T Consensus       157 l-~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~h  190 (288)
T 1b0a_A          157 T-FGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTH  190 (288)
T ss_dssp             C-TTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEEC
T ss_pred             C-CCCEEEEECCChHHHHHHHHHHHHCCC-eEEEEe
Confidence            5 588999999996 69999999999995 799985

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=90.31  E-value=1.1  Score=39.83  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=27.2

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      .| +.++++|.| .||+|.++++.|+..|. ++.++|
T Consensus         6 ~l-~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~   40 (291)
T 1e7w_A            6 AP-TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHY   40 (291)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CC-CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEc
Confidence            46 566777777 78999999999999997 688876

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=90.30  E-value=0.94  Score=39.70  Aligned_cols=31  Identities=19%  Similarity=0.351  Sum_probs=25.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEE-EeC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEV-IDM   72 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itl-vD~   72 (328)
                      -||.|+|+|.+|..+++.+...+- .|.- +|.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~-eLva~~d~   35 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGH-EIVGVIEN   35 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCC-EEEEEEec
Confidence            579999999999999999998876 6553 453

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=90.29  E-value=0.2  Score=45.78  Aligned_cols=35  Identities=17%  Similarity=0.380  Sum_probs=31.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|||+|..|..+|..|...|..+++|+|.+.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            46799999999999999999999975799999774

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=90.26  E-value=0.71  Score=43.20  Aligned_cols=79  Identities=16%  Similarity=0.132  Sum_probs=54.5

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCC-Ce---EEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC-CCcE-E
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGF-KN---LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-SGVN-I  112 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gv-g~---itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln-p~v~-v  112 (328)
                      ..||.|+| +|.+|..++-.|+..|+ +.   |.|+|-|.               +..+.|++..+--|+... |... +
T Consensus        32 ~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~---------------~~~~~~~~G~amDL~h~~~p~~~~v   96 (375)
T 7mdh_A           32 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGS---------------ERSFQALEGVAMELEDSLYPLLREV   96 (375)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECC---------------GGGHHHHHHHHHHHHTTTCTTEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCc---------------cchhhhhHHHHHhHHhhhhhhcCCc
Confidence            46899999 79999999999999888 44   77776332               122346677777777665 4432 2


Q ss_pred             EEEecccCCcchhhhccCCEEEecCC
Q 020259          113 VPHFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      ..     ...+.+-++++|+||.+..
T Consensus        97 ~i-----~~~~y~~~~daDvVVitag  117 (375)
T 7mdh_A           97 SI-----GIDPYEVFEDVDWALLIGA  117 (375)
T ss_dssp             EE-----ESCHHHHTTTCSEEEECCC
T ss_pred             EE-----ecCCHHHhCCCCEEEEcCC
Confidence            22     2235677899999987754

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=90.25  E-value=0.29  Score=45.05  Aligned_cols=36  Identities=22%  Similarity=0.217  Sum_probs=32.0

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .| ..++|.|||+|.+|..+|+.|...|. +++.+|..
T Consensus       142 ~l-~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~  177 (333)
T 1dxy_A          142 EL-GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPY  177 (333)
T ss_dssp             CG-GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CC-CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            57 58999999999999999999999997 68888854

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=90.24  E-value=0.77  Score=41.97  Aligned_cols=32  Identities=34%  Similarity=0.549  Sum_probs=24.0

Q ss_pred             CcEEEEcCChHHHHHHHHHH-H-hCCCeEEEEeC
Q 020259           41 ARILVVGAGGLGCELLKDLA-L-SGFKNLEVIDM   72 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~-l-~Gvg~itlvD~   72 (328)
                      -+|.|||+|.+|...+++|. . .|+.-+.++|.
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~   36 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDV   36 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcC
Confidence            47999999999999999998 4 45433335553

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=90.23  E-value=0.52  Score=42.37  Aligned_cols=33  Identities=24%  Similarity=0.182  Sum_probs=29.6

Q ss_pred             HHcCCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q 020259           37 LQEYARILVVGAGG-LGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        37 Lr~~~~VliiG~gg-lG~evaknL~l~Gvg~itlvD   71 (328)
                      | ..++++|||.|+ +|..+++.|...|. .+|+++
T Consensus       159 l-~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~h  192 (285)
T 3l07_A          159 T-EGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCH  192 (285)
T ss_dssp             C-TTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             C-CCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEe
Confidence            6 588999999998 79999999999998 789985

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=90.23  E-value=0.43  Score=45.83  Aligned_cols=83  Identities=16%  Similarity=0.236  Sum_probs=49.3

Q ss_pred             cCCcEEEEcCChH--HHHHHHHHHHhC--CCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           39 EYARILVVGAGGL--GCELLKDLALSG--FKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        39 ~~~~VliiG~ggl--G~evaknL~l~G--vg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      ++.+|.|||+|++  |..++..|+..-  .++|+|+|-+.=.   +.             +....++.+.+  ...+++.
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~geV~L~Di~~e~---le-------------~~~~~~~~l~~--~~~~I~~   65 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSGTVALYDLDFEA---AQ-------------KNEVIGNHSGN--GRWRYEA   65 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCEEEEEECSSHHH---HH-------------HHHHHHTTSTT--SCEEEEE
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCCeEEEEeCCHHH---HH-------------HHHHHHHHHhc--cCCeEEE
Confidence            4578999999996  689999988622  2499999854310   00             11111112221  2334433


Q ss_pred             EecccCCcchhhhccCCEEEecC--CCHHHHH
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGL--DSIEARS  144 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~--d~~~~~~  144 (328)
                      .     ....+.++++|+||.+.  ...+.|.
T Consensus        66 T-----tD~~eAl~dADfVI~airvG~~~~~~   92 (450)
T 3fef_A           66 V-----STLKKALSAADIVIISILPGSLDDME   92 (450)
T ss_dssp             E-----SSHHHHHTTCSEEEECCCSSCHHHHH
T ss_pred             E-----CCHHHHhcCCCEEEeccccCCcccch
Confidence            2     22356689999999996  4555544

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=90.23  E-value=0.48  Score=41.88  Aligned_cols=31  Identities=39%  Similarity=0.553  Sum_probs=26.1

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           42 RILVVGA-GGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +|+|.|+ |.+|+.+++.|. .|. +++.++.+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~-~V~~~~r~~   33 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVG-NLIALDVHS   33 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTS-EEEEECTTC
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCC-eEEEecccc
Confidence            6999995 999999999999 885 788877543

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=90.20  E-value=0.32  Score=45.46  Aligned_cols=35  Identities=23%  Similarity=0.304  Sum_probs=31.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|||+|..|..+|..|++.|+.+++|+|...
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            57899999999999999999999995599999654

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=90.19  E-value=0.18  Score=46.25  Aligned_cols=32  Identities=28%  Similarity=0.321  Sum_probs=29.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +--|+|||+|..|+.+|..|++.|+ +++|+|.
T Consensus         4 ~yDViIVGaGpaGl~~A~~La~~G~-~V~v~Er   35 (397)
T 3oz2_A            4 TYDVLVVGGGPGGSTAARYAAKYGL-KTLMIEK   35 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeC
Confidence            4569999999999999999999999 6899985

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=90.17  E-value=0.3  Score=44.92  Aligned_cols=37  Identities=19%  Similarity=0.151  Sum_probs=32.3

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..| ...+|.|||+|.+|..+|+.|...|. +++.+|..
T Consensus       142 ~~l-~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~  178 (331)
T 1xdw_A          142 KEV-RNCTVGVVGLGRIGRVAAQIFHGMGA-TVIGEDVF  178 (331)
T ss_dssp             CCG-GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cCC-CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            357 68999999999999999999999997 68888754

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=90.16  E-value=0.85  Score=38.89  Aligned_cols=35  Identities=20%  Similarity=0.180  Sum_probs=28.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhC-CCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSG-FKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~G-vg~itlvD~d   73 (328)
                      +..+|+|.| .|++|.++++.|+..| -.++++++.+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~   39 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRS   39 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            356899998 6999999999999994 2378887754

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=90.07  E-value=0.31  Score=44.89  Aligned_cols=36  Identities=19%  Similarity=0.292  Sum_probs=31.5

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ..| ...+|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       142 ~~l-~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~  177 (333)
T 1j4a_A          142 REV-RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDI  177 (333)
T ss_dssp             CCG-GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             ccC-CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            357 58999999999999999999999997 6888774

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=90.03  E-value=0.83  Score=39.69  Aligned_cols=37  Identities=27%  Similarity=0.278  Sum_probs=29.0

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCC--CeEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGF--KNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gv--g~itlvD~d   73 (328)
                      .+ +..+|+|.| .|++|.++++.|+..|.  .++.++|.+
T Consensus        18 ~~-~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~   57 (267)
T 1sny_A           18 GS-HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRN   57 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESC
T ss_pred             CC-CCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecC
Confidence            35 567788887 78999999999999994  478888743

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=90.02  E-value=1.4  Score=42.48  Aligned_cols=76  Identities=14%  Similarity=0.256  Sum_probs=49.3

Q ss_pred             CCcEEEEcCChH-HHHHHHHHHHh--CC--CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHH---HH-HhhCCCc
Q 020259           40 YARILVVGAGGL-GCELLKDLALS--GF--KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAK---RV-MERVSGV  110 (328)
Q Consensus        40 ~~~VliiG~ggl-G~evaknL~l~--Gv--g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~---~l-~~lnp~v  110 (328)
                      ..+|.|||+|++ |..++..|+..  +.  .+|+|+|-+.                   .|++...+   .+ .......
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~-------------------e~~~~~~~~~~~~l~~~~~~~   88 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK-------------------ERQDRIAGACDVFIREKAPDI   88 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH-------------------HHHHHHHHHHHHHHHHHCTTS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCH-------------------HHHHHHHHHHHHHhccCCCCC
Confidence            458999999998 66688888887  55  4799998443                   23333222   22 2344455


Q ss_pred             EEEEEecccCCcchhhhccCCEEEecCCC
Q 020259          111 NIVPHFCRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       111 ~v~~~~~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      ++....     ...+-++++|+||.+...
T Consensus        89 ~I~~t~-----D~~eal~~AD~VViaag~  112 (472)
T 1u8x_X           89 EFAATT-----DPEEAFTDVDFVMAHIRV  112 (472)
T ss_dssp             EEEEES-----CHHHHHSSCSEEEECCCT
T ss_pred             EEEEEC-----CHHHHHcCCCEEEEcCCC
Confidence            665531     123567899999998754

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=89.99  E-value=2.2  Score=38.23  Aligned_cols=32  Identities=31%  Similarity=0.530  Sum_probs=26.3

Q ss_pred             cEEEEc-CChHHHHHHHHHHHh---CC--CeEEEEeCC
Q 020259           42 RILVVG-AGGLGCELLKDLALS---GF--KNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~---Gv--g~itlvD~d   73 (328)
                      +|+|.| .|.+|+.+++.|...   |+  .+++++|..
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~   39 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSL   39 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECC
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECC
Confidence            699998 699999999999996   63  478888743

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=89.99  E-value=0.8  Score=40.17  Aligned_cols=32  Identities=28%  Similarity=0.472  Sum_probs=26.4

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ++..++|.| .||+|.++++.|+..|. ++.++|
T Consensus        24 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~   56 (269)
T 3gk3_A           24 AKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSH   56 (269)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEE
T ss_pred             cCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence            466677777 68999999999999998 677766

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=89.98  E-value=0.33  Score=45.13  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~   74 (328)
                      .+||+|||.|.-|..+|+.|.+.|-+ +|||+|...
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            57999999999999999999999875 899998754

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=89.97  E-value=0.31  Score=45.36  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=31.8

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .+ ...+|+|+|+|++|..+++.+...|. +++++|.
T Consensus       163 ~l-~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~  197 (369)
T 2eez_A          163 GV-APASVVILGGGTVGTNAAKIALGMGA-QVTILDV  197 (369)
T ss_dssp             BB-CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEEC
Confidence            47 58999999999999999999999998 8999884

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=89.96  E-value=0.31  Score=45.36  Aligned_cols=35  Identities=23%  Similarity=0.465  Sum_probs=31.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +..+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   59 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDN   59 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            35789999999999999999999998 899999754

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=89.96  E-value=0.3  Score=45.63  Aligned_cols=34  Identities=35%  Similarity=0.410  Sum_probs=30.7

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      | +.++|+|+|+|.+|..+|+.|...|. ++++.|.
T Consensus       171 L-~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~  204 (364)
T 1leh_A          171 L-EGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDV  204 (364)
T ss_dssp             C-TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             C-CcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcC
Confidence            6 57899999999999999999999998 6778874

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=89.91  E-value=0.59  Score=40.63  Aligned_cols=35  Identities=34%  Similarity=0.438  Sum_probs=28.9

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +| ++.+++|.| .||+|.++++.|+..|. ++.++|.
T Consensus         3 ~l-~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r   38 (253)
T 1hxh_A            3 RL-QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDI   38 (253)
T ss_dssp             TT-TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CC-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            35 577788887 68999999999999997 6888764

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=89.91  E-value=0.76  Score=40.64  Aligned_cols=34  Identities=32%  Similarity=0.385  Sum_probs=27.9

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      | ++++++|.| .||+|.++++.|+..|. ++.++|.
T Consensus        27 ~-~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r   61 (283)
T 1g0o_A           27 L-EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYA   61 (283)
T ss_dssp             C-TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             C-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            5 467777777 78999999999999997 6777763

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=89.89  E-value=0.33  Score=44.86  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=31.2

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +..+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~-~v~viE~~~   44 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGW-DVRLHEKSS   44 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            46789999999999999999999998 799999654

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=89.87  E-value=0.28  Score=44.54  Aligned_cols=33  Identities=27%  Similarity=0.443  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...|+|||+|..|..+|..|++.|. +++|+|..
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~-~V~vlE~~   36 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGH-EVLVAEAA   36 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            4679999999999999999999998 79999987

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=89.86  E-value=0.43  Score=42.84  Aligned_cols=34  Identities=21%  Similarity=0.238  Sum_probs=28.5

Q ss_pred             HHcCCcEEEEcCCh-HHHHHHHHHHHhC-CCeEEEEe
Q 020259           37 LQEYARILVVGAGG-LGCELLKDLALSG-FKNLEVID   71 (328)
Q Consensus        37 Lr~~~~VliiG~gg-lG~evaknL~l~G-vg~itlvD   71 (328)
                      | ..++++|||.|. +|..+++.|...| -..+|+++
T Consensus       156 l-~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h  191 (281)
T 2c2x_A          156 I-AGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCH  191 (281)
T ss_dssp             C-TTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEEC
T ss_pred             C-CCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence            6 588999999997 5999999999884 35788874

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=89.84  E-value=1.8  Score=41.15  Aligned_cols=83  Identities=10%  Similarity=0.043  Sum_probs=48.2

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC-CCcEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALS-GFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-SGVNI  112 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~-Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln-p~v~v  112 (328)
                      ..+ +.-+|.|||+|.+|...++.|... |+.-+.++|.                   ...|++.+++.+.+.. |.+++
T Consensus        16 ~~~-~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~-------------------~~~~~~~~a~~~~~~g~~~~~~   75 (444)
T 2ixa_A           16 FNP-KKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADP-------------------DPYMVGRAQEILKKNGKKPAKV   75 (444)
T ss_dssp             ----CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECS-------------------CHHHHHHHHHHHHHTTCCCCEE
T ss_pred             CCC-CCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeC-------------------CHHHHHHHHHHHHhcCCCCCce
Confidence            335 467899999999999999988764 4322334442                   2356777777665543 32332


Q ss_pred             EEEecccCCcchhhhc--cCCEEEecCCCH
Q 020259          113 VPHFCRIEDKDISFYN--DFNIIVLGLDSI  140 (328)
Q Consensus       113 ~~~~~~~~~~~~~~~~--~~dvVi~~~d~~  140 (328)
                        +... .+..++.++  +.|+|+.|+.+.
T Consensus        76 --~~~~-~~~~~~ll~~~~vD~V~i~tp~~  102 (444)
T 2ixa_A           76 --FGNG-NDDYKNMLKDKNIDAVFVSSPWE  102 (444)
T ss_dssp             --ECSS-TTTHHHHTTCTTCCEEEECCCGG
T ss_pred             --eccC-CCCHHHHhcCCCCCEEEEcCCcH
Confidence              2210 012344554  588888887654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=89.82  E-value=0.96  Score=41.16  Aligned_cols=34  Identities=26%  Similarity=0.498  Sum_probs=30.8

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ...+|+|.|+|++|.-.+..+..+|...++.+|.
T Consensus       160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~  193 (346)
T 4a2c_A          160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDI  193 (346)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEec
Confidence            4678999999999999999999999998888874

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=89.80  E-value=1.1  Score=39.70  Aligned_cols=35  Identities=26%  Similarity=0.371  Sum_probs=29.1

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | ++++++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus        25 l-~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~   60 (277)
T 4dqx_A           25 L-NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVN   60 (277)
T ss_dssp             T-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             C-CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5 467788887 68999999999999998 78887743

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=89.79  E-value=0.72  Score=41.15  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=26.6

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ..+|+|.| .|.+|+.+++.|...|. ++++++.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~-~v~~~~r   35 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRT   35 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT-EEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-eEEEEec
Confidence            56899999 59999999999999986 5666653

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=89.79  E-value=0.53  Score=41.18  Aligned_cols=77  Identities=17%  Similarity=0.199  Sum_probs=48.5

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +++++|.| .||+|.++++.|+..|. ++.+.+..                  ...+.+.+.+.+++..+  ++..+..+
T Consensus         4 ~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r------------------~~~~~~~~~~~~~~~~~--~~~~~~~D   62 (258)
T 3oid_A            4 NKCALVTGSSRGVGKAAAIRLAENGY-NIVINYAR------------------SKKAALETAEEIEKLGV--KVLVVKAN   62 (258)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESS------------------CHHHHHHHHHHHHTTTC--CEEEEECC
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCC------------------CHHHHHHHHHHHHhcCC--cEEEEEcC
Confidence            56677777 68999999999999998 56664211                  12355566666665543  45555556


Q ss_pred             cCCcc--h-------hhhccCCEEEecC
Q 020259          119 IEDKD--I-------SFYNDFNIIVLGL  137 (328)
Q Consensus       119 ~~~~~--~-------~~~~~~dvVi~~~  137 (328)
                      +.+..  .       +.+.+.|++|.+.
T Consensus        63 v~~~~~v~~~~~~~~~~~g~id~lv~nA   90 (258)
T 3oid_A           63 VGQPAKIKEMFQQIDETFGRLDVFVNNA   90 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            55421  1       2234678888764

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=89.77  E-value=1.2  Score=42.59  Aligned_cols=78  Identities=19%  Similarity=0.274  Sum_probs=50.2

Q ss_pred             CCcEEEEcCChH-HHHHHHHHHH--hCC--CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHH---HHH-HhhCCCc
Q 020259           40 YARILVVGAGGL-GCELLKDLAL--SGF--KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA---KRV-MERVSGV  110 (328)
Q Consensus        40 ~~~VliiG~ggl-G~evaknL~l--~Gv--g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~---~~l-~~lnp~v  110 (328)
                      ..+|.|||+|++ |..++..|+.  .+.  .+|+|+|-+.                 |+.|++.+.   +.+ .......
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~-----------------~~e~~~~~~~~~~~~~~~~~~~~   69 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE-----------------GKEKLEIVGALAKRMVEKAGVPI   69 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG-----------------GHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCC-----------------ChHHHHHHHHHHHHHHhhcCCCc
Confidence            358999999999 8888888887  554  5799998322                 224444432   222 2344455


Q ss_pred             EEEEEecccCCcchhhhccCCEEEecCCC
Q 020259          111 NIVPHFCRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       111 ~v~~~~~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      ++....     ...+-++++|+||.+...
T Consensus        70 ~i~~t~-----D~~eal~gAD~VVitagv   93 (450)
T 1s6y_A           70 EIHLTL-----DRRRALDGADFVTTQFRV   93 (450)
T ss_dssp             EEEEES-----CHHHHHTTCSEEEECCCT
T ss_pred             EEEEeC-----CHHHHhCCCCEEEEcCCC
Confidence            665531     124567899999988663

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=89.76  E-value=0.39  Score=43.94  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=28.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ...+|+|+|+|++|..++..+...|. +++.+|
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~  195 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVD  195 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEe
Confidence            46789999999999999999999998 787776

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=89.75  E-value=0.3  Score=44.60  Aligned_cols=37  Identities=27%  Similarity=0.340  Sum_probs=32.5

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..| ..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       135 ~~l-~g~tvGIiG~G~IG~~vA~~l~~~G~-~V~~~dr~  171 (315)
T 3pp8_A          135 YTR-EEFSVGIMGAGVLGAKVAESLQAWGF-PLRCWSRS  171 (315)
T ss_dssp             CCS-TTCCEEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             CCc-CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            457 58999999999999999999999998 68888754

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=89.71  E-value=0.34  Score=45.10  Aligned_cols=35  Identities=26%  Similarity=0.247  Sum_probs=31.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      ..+|+|||+|..|..+|..|++.|+ +++|+|....
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   39 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSPQ   39 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-CEEEEecCCC
Confidence            5689999999999999999999998 7999997643

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=89.70  E-value=0.28  Score=45.17  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=31.6

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ..| ...+|.|||+|.+|..+|+.|...|. +++.+|.
T Consensus       142 ~~l-~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~  177 (333)
T 2d0i_A          142 ESL-YGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSR  177 (333)
T ss_dssp             CCS-TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECS
T ss_pred             CCC-CcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECC
Confidence            357 58999999999999999999999997 7888874

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=89.66  E-value=0.33  Score=44.55  Aligned_cols=38  Identities=16%  Similarity=0.295  Sum_probs=33.2

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..| .+++|.|||+|.+|..+|+.|...|. +++.+|...
T Consensus       136 ~~l-~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~  173 (324)
T 3hg7_A          136 QGL-KGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRSG  173 (324)
T ss_dssp             CCS-TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             ccc-ccceEEEEEECHHHHHHHHHHHhCCC-EEEEEcCCh
Confidence            358 68999999999999999999999998 788888543

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=89.66  E-value=0.72  Score=42.31  Aligned_cols=31  Identities=23%  Similarity=0.308  Sum_probs=26.5

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           42 RILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +|+|.| .|.+|+.+++.|...|.-+++.+|.
T Consensus         2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~   33 (369)
T 3st7_A            2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHR   33 (369)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEECCT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEECC
Confidence            699999 7899999999999999756766664

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=89.65  E-value=0.32  Score=44.73  Aligned_cols=35  Identities=17%  Similarity=0.173  Sum_probs=31.1

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .| ...+|.|||+|.+|..+|+.|...|. +++.+|.
T Consensus       147 ~l-~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~  181 (334)
T 2dbq_A          147 DV-YGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSR  181 (334)
T ss_dssp             CC-TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CC-CCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECC
Confidence            47 58899999999999999999999997 7888874

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=89.65  E-value=0.5  Score=43.10  Aligned_cols=33  Identities=21%  Similarity=0.436  Sum_probs=28.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ...+|+|+|+|++|..++..+...|. +++.+|.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~  198 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDI  198 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeC
Confidence            46789999999999999999999999 7877763

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=89.62  E-value=0.48  Score=41.12  Aligned_cols=36  Identities=33%  Similarity=0.449  Sum_probs=30.0

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +| ++++++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus         3 ~l-~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   39 (247)
T 3rwb_A            3 RL-AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDIN   39 (247)
T ss_dssp             TT-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             Cc-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46 578889998 58999999999999998 68887643

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=89.60  E-value=0.33  Score=44.20  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=31.8

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .| ..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       141 ~l-~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~  176 (311)
T 2cuk_A          141 DL-QGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHART  176 (311)
T ss_dssp             CC-TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CC-CCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCC
Confidence            57 58999999999999999999999997 78888754

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=89.58  E-value=1.5  Score=38.24  Aligned_cols=76  Identities=20%  Similarity=0.212  Sum_probs=45.3

Q ss_pred             HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChH-HHHHHHHHHhhCCCcEE
Q 020259           35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK-AEVAAKRVMERVSGVNI  112 (328)
Q Consensus        35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~K-a~a~~~~l~~lnp~v~v  112 (328)
                      ..| +..+|+|.| .||+|.++++.|+..|. ++.+++.+.-....    ..+-..|+.... .+.+.+.+.+....+.+
T Consensus        17 ~~l-~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~----~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~   90 (253)
T 2nm0_A           17 RSH-MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPPEG----FLAVKCDITDTEQVEQAYKEIEETHGPVEV   90 (253)
T ss_dssp             ----CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTT----SEEEECCTTSHHHHHHHHHHHHHHTCSCSE
T ss_pred             cCC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhhcc----ceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            346 577889998 78999999999999997 78888765322111    122334665543 33444444444444444


Q ss_pred             EEEe
Q 020259          113 VPHF  116 (328)
Q Consensus       113 ~~~~  116 (328)
                      -.+.
T Consensus        91 lv~n   94 (253)
T 2nm0_A           91 LIAN   94 (253)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            4443

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=89.56  E-value=0.51  Score=43.43  Aligned_cols=77  Identities=18%  Similarity=0.248  Sum_probs=53.3

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCC-Ce-----EEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC-CCcEE
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGF-KN-----LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-SGVNI  112 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gv-g~-----itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln-p~v~v  112 (328)
                      .||+|+| +|.+|+.++-.|+..|+ ++     |.|+|-..                 .+.|++..+.-|+... |.+. 
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~-----------------~~~~~~g~a~DL~~~~~~~~~-   65 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITP-----------------MMGVLDGVLMELQDCALPLLK-   65 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGG-----------------GHHHHHHHHHHHHHTCCTTEE-
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCC-----------------ccccchhhHhhhHhhhhcccC-
Confidence            4799999 89999999999998887 45     89988421                 1246777777777753 5432 


Q ss_pred             EEEecccCCcchhhhccCCEEEecCC
Q 020259          113 VPHFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                       .  -.......+-++++|+||.+..
T Consensus        66 -~--~~~~~~~~~~~~daDvVvitAg   88 (333)
T 5mdh_A           66 -D--VIATDKEEIAFKDLDVAILVGS   88 (333)
T ss_dssp             -E--EEEESCHHHHTTTCSEEEECCS
T ss_pred             -C--EEEcCCcHHHhCCCCEEEEeCC
Confidence             1  1112234566899999977643

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=89.56  E-value=0.35  Score=44.83  Aligned_cols=35  Identities=23%  Similarity=0.350  Sum_probs=31.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      ...|+|||+|..|..+|..|++.|. +++|+|....
T Consensus         4 ~~DVvIIGaG~~Gl~~A~~La~~G~-~V~vlE~~~~   38 (397)
T 2oln_A            4 SYDVVVVGGGPVGLATAWQVAERGH-RVLVLERHTF   38 (397)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence            3579999999999999999999998 6999997654

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=89.55  E-value=2.1  Score=38.56  Aligned_cols=32  Identities=25%  Similarity=0.403  Sum_probs=27.0

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHh--CCCeEEEEeCC
Q 020259           41 ARILVVG-AGGLGCELLKDLALS--GFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~--Gvg~itlvD~d   73 (328)
                      .+|+|.| .|.+|+.+++.|+..  |. +++++|..
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~-~V~~~~r~   39 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDV-HVTVLDKL   39 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTC-EEEEEECC
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCC-EEEEEeCC
Confidence            5799999 699999999999999  54 78888753

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=89.54  E-value=1.2  Score=40.19  Aligned_cols=32  Identities=28%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             HHHHHHHHcCCcEEEEc-CChHHHHHHHHHHHh
Q 020259           31 TELRDDLQEYARILVVG-AGGLGCELLKDLALS   62 (328)
Q Consensus        31 ~~~q~~Lr~~~~VliiG-~gglG~evaknL~l~   62 (328)
                      .++|..+.+.-||.|+| +|.+|..+++.+...
T Consensus        12 ~~~~~~m~~~irV~V~Ga~GrMGr~i~~~v~~~   44 (288)
T 3ijp_A           12 LEAQTQGPGSMRLTVVGANGRMGRELITAIQRR   44 (288)
T ss_dssp             ---------CEEEEESSTTSHHHHHHHHHHHTC
T ss_pred             hhhhhhccCCeEEEEECCCCHHHHHHHHHHHhC
Confidence            45677663346899999 999999999988743

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=89.53  E-value=0.56  Score=42.18  Aligned_cols=33  Identities=30%  Similarity=0.407  Sum_probs=29.5

Q ss_pred             HHcCCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q 020259           37 LQEYARILVVGAGG-LGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        37 Lr~~~~VliiG~gg-lG~evaknL~l~Gvg~itlvD   71 (328)
                      | ..++|+|||.|+ +|..++..|...|. .+|+++
T Consensus       159 l-~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~h  192 (286)
T 4a5o_A          159 L-YGMDAVVVGASNIVGRPMALELLLGGC-TVTVTH  192 (286)
T ss_dssp             C-TTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             C-CCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEe
Confidence            5 588999999988 89999999999998 789885

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=89.44  E-value=0.33  Score=47.02  Aligned_cols=35  Identities=23%  Similarity=0.315  Sum_probs=31.4

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | ...+|+|+|+|++|..+|+.|...|. ++.++|.+
T Consensus       263 L-~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~  297 (488)
T 3ond_A          263 I-AGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEID  297 (488)
T ss_dssp             C-TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             c-cCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            5 57899999999999999999999998 88888754

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=89.44  E-value=3.2  Score=38.05  Aligned_cols=32  Identities=28%  Similarity=0.512  Sum_probs=27.4

Q ss_pred             CcEEEEc-CChHHHHHHHHHH-HhCCCeEEEEeCC
Q 020259           41 ARILVVG-AGGLGCELLKDLA-LSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~-l~Gvg~itlvD~d   73 (328)
                      .+|+|.| .|.+|+.+++.|+ ..|. +++++|..
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~-~V~~~~r~   36 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNH-SVVIVDSL   36 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCC-EEEEEecC
Confidence            4799998 5999999999999 9996 78888743

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=89.41  E-value=0.71  Score=39.86  Aligned_cols=62  Identities=21%  Similarity=0.200  Sum_probs=40.9

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++++++|.| .||+|.++++.|+..|. ++.+++..                  ...+.+...+.+++..+  ++.....
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~~~~   64 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGN------------------RKEEAEETVYEIQSNGG--SAFSIGA   64 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS------------------CSHHHHHHHHHHHHTTC--EEEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCC------------------chHHHHHHHHHHHhcCC--ceEEEec
Confidence            467788887 68999999999999997 56665421                  12355556666666543  4555555


Q ss_pred             ccCC
Q 020259          118 RIED  121 (328)
Q Consensus       118 ~~~~  121 (328)
                      ++.+
T Consensus        65 D~~~   68 (255)
T 3icc_A           65 NLES   68 (255)
T ss_dssp             CTTS
T ss_pred             CcCC
Confidence            5544

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=89.38  E-value=0.57  Score=41.30  Aligned_cols=80  Identities=15%  Similarity=0.262  Sum_probs=46.3

Q ss_pred             HHHHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChH-HHHHHHHHHhhCCC
Q 020259           32 ELRDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK-AEVAAKRVMERVSG  109 (328)
Q Consensus        32 ~~q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~K-a~a~~~~l~~lnp~  109 (328)
                      +-+..+ ++++|+|.| .||+|.++++.|+..|. ++.++|.+.-.......   +-..|+.... .+.+.+.+.+....
T Consensus         7 ~~~~~~-~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~---~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (269)
T 3vtz_A            7 HHMEEF-TDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSDVNVSD---HFKIDVTNEEEVKEAVEKTTKKYGR   81 (269)
T ss_dssp             ---CTT-TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--CTTSSE---EEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             ccccCC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhccCcee---EEEecCCCHHHHHHHHHHHHHHcCC
Confidence            334556 688888888 68999999999999998 68888865433322111   1234565543 33444444444344


Q ss_pred             cEEEEEe
Q 020259          110 VNIVPHF  116 (328)
Q Consensus       110 v~v~~~~  116 (328)
                      +.+-.+.
T Consensus        82 iD~lv~n   88 (269)
T 3vtz_A           82 IDILVNN   88 (269)
T ss_dssp             CCEEEEC
T ss_pred             CCEEEEC
Confidence            4444443

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=89.34  E-value=0.39  Score=46.48  Aligned_cols=36  Identities=19%  Similarity=0.398  Sum_probs=32.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      ...|+|||+|.+|+.+|..|+..|. +++|+|.+.+.
T Consensus         3 ~~DVvIIGgGi~G~~~A~~La~~G~-~V~llE~~~~~   38 (501)
T 2qcu_A            3 TKDLIVIGGGINGAGIAADAAGRGL-SVLMLEAQDLA   38 (501)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCC-CEEEEECCCCC
Confidence            5689999999999999999999998 69999976554

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=89.33  E-value=1.5  Score=39.27  Aligned_cols=32  Identities=34%  Similarity=0.533  Sum_probs=27.1

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|+|.| .|.+|+.+++.|...|. +++++|..
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   34 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGL-SVVVVDNL   34 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            3699998 69999999999999995 78887743

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=89.32  E-value=1.5  Score=39.91  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=27.5

Q ss_pred             HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ..| +++.++|.| .||+|.++++.|+..|. ++.++|
T Consensus        42 ~~l-~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~   77 (328)
T 2qhx_A           42 TAP-TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHY   77 (328)
T ss_dssp             ----CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             ccc-CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEc
Confidence            346 577788887 78999999999999997 688876

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=89.21  E-value=1.7  Score=38.66  Aligned_cols=35  Identities=20%  Similarity=0.206  Sum_probs=28.9

Q ss_pred             HHHcCCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAG---GLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~g---glG~evaknL~l~Gvg~itlvD~   72 (328)
                      .| ++++++|.|++   |+|.++++.|+..|. ++.++|.
T Consensus        28 ~l-~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r   65 (293)
T 3grk_A           28 LL-QGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQ   65 (293)
T ss_dssp             TT-TTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cC-CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcC
Confidence            46 57889999963   499999999999997 6888774

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=89.10  E-value=0.26  Score=44.42  Aligned_cols=34  Identities=24%  Similarity=0.354  Sum_probs=30.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|||+|..|..+|..|.+.|. +++|+|...
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~-~v~vie~~~   36 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGL-SYVILDAEA   36 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSC-CEEEECCSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            4689999999999999999999998 799999763

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=89.06  E-value=0.58  Score=43.27  Aligned_cols=91  Identities=16%  Similarity=0.170  Sum_probs=54.8

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCC--eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFK--NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg--~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      -+|.|+| .|-+|.|+++.|..-.+-  ++.++.               +++..|+.-.         +. ...+.... 
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~---------------s~~~aG~~~~---------~~-~~~~~~~~-   55 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFA---------------SARSQGRKLA---------FR-GQEIEVED-   55 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE---------------CTTTSSCEEE---------ET-TEEEEEEE-
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEE---------------CcccCCCcee---------ec-CCceEEEe-
Confidence            3699999 567899999988876443  455543               3344555322         11 11222211 


Q ss_pred             ccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259          118 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT  175 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~  175 (328)
                       .   ..+.++++|+|+.|+.....+.+...+.              +.+..+|+.+.
T Consensus        56 -~---~~~~~~~~Dvvf~a~~~~~s~~~a~~~~--------------~~G~~vID~Sa   95 (344)
T 3tz6_A           56 -A---ETADPSGLDIALFSAGSAMSKVQAPRFA--------------AAGVTVIDNSS   95 (344)
T ss_dssp             -T---TTSCCTTCSEEEECSCHHHHHHHHHHHH--------------HTTCEEEECSS
T ss_pred             -C---CHHHhccCCEEEECCChHHHHHHHHHHH--------------hCCCEEEECCC
Confidence             1   2234578999999998776666555543              44666777654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=89.05  E-value=5.9  Score=32.63  Aligned_cols=88  Identities=11%  Similarity=-0.008  Sum_probs=49.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhC-CCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLALSG-FKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~G-vg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..+|+-+|||. |. ++..|+..| -.+++.+|.+.                   ...+.+.+.+++..- -+++....+
T Consensus        41 ~~~vLDiG~G~-G~-~~~~la~~~~~~~v~~vD~s~-------------------~~~~~a~~~~~~~~~-~~v~~~~~d   98 (204)
T 3e05_A           41 DLVMWDIGAGS-AS-VSIEASNLMPNGRIFALERNP-------------------QYLGFIRDNLKKFVA-RNVTLVEAF   98 (204)
T ss_dssp             TCEEEEETCTT-CH-HHHHHHHHCTTSEEEEEECCH-------------------HHHHHHHHHHHHHTC-TTEEEEECC
T ss_pred             CCEEEEECCCC-CH-HHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHHHHhCC-CcEEEEeCC
Confidence            56899999985 55 444455554 56899988433                   345555566555432 235555554


Q ss_pred             cCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      ..+... ....||+|+...........+.+..
T Consensus        99 ~~~~~~-~~~~~D~i~~~~~~~~~~~~l~~~~  129 (204)
T 3e05_A           99 APEGLD-DLPDPDRVFIGGSGGMLEEIIDAVD  129 (204)
T ss_dssp             TTTTCT-TSCCCSEEEESCCTTCHHHHHHHHH
T ss_pred             hhhhhh-cCCCCCEEEECCCCcCHHHHHHHHH
Confidence            432211 2267999988744323334444444

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=89.04  E-value=0.35  Score=44.22  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .| ...+|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       143 ~l-~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~  177 (320)
T 1gdh_A          143 KL-DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDT  177 (320)
T ss_dssp             CC-TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             CC-CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            57 58999999999999999999998886 7888774

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=89.04  E-value=0.34  Score=44.49  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=31.7

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .| ...+|.|||+|.+|..+|+.|...|. +++.+|..
T Consensus       152 ~l-~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~  187 (330)
T 2gcg_A          152 GL-TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGR  187 (330)
T ss_dssp             CC-TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESS
T ss_pred             CC-CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            47 58899999999999999999999998 68888843

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=89.01  E-value=0.74  Score=40.27  Aligned_cols=30  Identities=27%  Similarity=0.370  Sum_probs=25.6

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHh--CCCeEEEEeC
Q 020259           42 RILVVGA-GGLGCELLKDLALS--GFKNLEVIDM   72 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~--Gvg~itlvD~   72 (328)
                      +|+|.|+ |.+|+.+++.|...  |. ++++++.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r   33 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVR   33 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEES
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEc
Confidence            5899996 99999999999988  75 6887764

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=89.00  E-value=1.2  Score=38.94  Aligned_cols=36  Identities=17%  Similarity=0.316  Sum_probs=30.5

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      | ++.+|+|.| .||+|.++++.|+..|. ++.++|.+.
T Consensus         6 l-~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~   42 (264)
T 2dtx_A            6 L-RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHD   42 (264)
T ss_dssp             G-TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             c-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCc
Confidence            6 577889998 78999999999999997 788887653

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=89.00  E-value=0.52  Score=43.66  Aligned_cols=31  Identities=23%  Similarity=0.395  Sum_probs=23.1

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEE
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVI   70 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlv   70 (328)
                      ..+|.|+| .|-+|.++++.|.....-+++.+
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai   35 (350)
T 2ep5_A            4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKV   35 (350)
T ss_dssp             CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEE
T ss_pred             CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEE
Confidence            35799999 79999999998875433345444

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=89.00  E-value=0.79  Score=41.76  Aligned_cols=35  Identities=26%  Similarity=0.186  Sum_probs=30.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC-cc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD-RI   75 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d-~v   75 (328)
                      .+.+|+|||+|..|..+|..|+ .|. +++|+|.. .+
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~G~-~V~vlE~~~~~   43 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-AHG-RVVVLEREAQP   43 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-TTS-CEEEECSSSST
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-CCC-CEEEEECCCCc
Confidence            3678999999999999999999 587 79999986 35

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=88.92  E-value=0.47  Score=48.51  Aligned_cols=33  Identities=21%  Similarity=0.405  Sum_probs=30.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|..|+-||..++.+|+ .++++|.+.
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~-~V~l~D~~~  349 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDP  349 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-chhcccchH
Confidence            689999999999999999999999 799998543

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=88.91  E-value=0.64  Score=40.28  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=26.5

Q ss_pred             HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ..+ ++++|+|.| .||+|.++++.|+..|. ++.++|
T Consensus         9 ~~~-~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~   44 (256)
T 3ezl_A            9 MVM-SQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGC   44 (256)
T ss_dssp             -----CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEE
T ss_pred             CCC-CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence            345 577888887 78999999999999998 566666

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=88.90  E-value=1.7  Score=39.18  Aligned_cols=33  Identities=33%  Similarity=0.310  Sum_probs=24.1

Q ss_pred             CCcEEEEcCChHHHH-HHHHHHH-hCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCE-LLKDLAL-SGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~e-vaknL~l-~Gvg~itlvD~   72 (328)
                      ..+|.|||+|.+|.. +++.|.. .|+.-+.++|.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~   39 (319)
T 1tlt_A            5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSP   39 (319)
T ss_dssp             CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECS
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECC
Confidence            468999999999996 8898875 35432336664

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=88.88  E-value=0.79  Score=41.74  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=26.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHh-CCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALS-GFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~-Gvg~itlvD~d   73 (328)
                      .-||.|||+|.+|..+++.|... ++.-+.++|.+
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~   37 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRR   37 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESS
T ss_pred             CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            45799999999999999999876 44334566744

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=88.87  E-value=0.35  Score=45.07  Aligned_cols=36  Identities=33%  Similarity=0.433  Sum_probs=31.4

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .| ..++|.|||+|.+|..+|+.|...|..++..+|.
T Consensus       161 ~l-~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~  196 (364)
T 2j6i_A          161 DI-EGKTIATIGAGRIGYRVLERLVPFNPKELLYYDY  196 (364)
T ss_dssp             CS-TTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECS
T ss_pred             cC-CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence            47 6899999999999999999999999754888773

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=88.86  E-value=0.43  Score=44.17  Aligned_cols=37  Identities=14%  Similarity=0.320  Sum_probs=32.6

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..| .+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       144 ~~l-~gktvgIiGlG~IG~~vA~~l~~~G~-~V~~~d~~  180 (343)
T 2yq5_A          144 NEI-YNLTVGLIGVGHIGSAVAEIFSAMGA-KVIAYDVA  180 (343)
T ss_dssp             CCG-GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             ccc-CCCeEEEEecCHHHHHHHHHHhhCCC-EEEEECCC
Confidence            357 58999999999999999999999998 78888854

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=88.84  E-value=0.36  Score=44.51  Aligned_cols=34  Identities=21%  Similarity=0.314  Sum_probs=30.3

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      .| ..++|.|||+|.+|..+|+.|...|. ++..+|
T Consensus       162 ~l-~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d  195 (335)
T 2g76_A          162 EL-NGKTLGILGLGRIGREVATRMQSFGM-KTIGYD  195 (335)
T ss_dssp             CC-TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEC
T ss_pred             CC-CcCEEEEEeECHHHHHHHHHHHHCCC-EEEEEC
Confidence            57 58999999999999999999998886 677776

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=88.84  E-value=0.35  Score=44.54  Aligned_cols=36  Identities=11%  Similarity=0.221  Sum_probs=31.6

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .| ...+|.|||+|.+|..+|+.|...|. +++++|..
T Consensus       161 ~l-~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~dr~  196 (333)
T 3ba1_A          161 KF-SGKRVGIIGLGRIGLAVAERAEAFDC-PISYFSRS  196 (333)
T ss_dssp             CC-TTCCEEEECCSHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             cc-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            47 58899999999999999999999997 68888754

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=88.75  E-value=1.7  Score=42.10  Aligned_cols=63  Identities=24%  Similarity=0.375  Sum_probs=44.3

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      ..++|.| .||+|.++++.|+..|..++.+++.....                ..+++.+.+.+.+..  .++.....++
T Consensus       240 ~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~----------------~~~~~~l~~~l~~~g--~~v~~~~~Dv  301 (496)
T 3mje_A          240 GSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGAD----------------APGAAELRAELEQLG--VRVTIAACDA  301 (496)
T ss_dssp             SEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGG----------------STTHHHHHHHHHHTT--CEEEEEECCT
T ss_pred             CEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCC----------------hHHHHHHHHHHHhcC--CeEEEEEccC
Confidence            7788887 89999999999999999899988643221                123455566666653  4566666666


Q ss_pred             CC
Q 020259          120 ED  121 (328)
Q Consensus       120 ~~  121 (328)
                      .+
T Consensus       302 td  303 (496)
T 3mje_A          302 AD  303 (496)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=88.75  E-value=1.1  Score=41.07  Aligned_cols=23  Identities=17%  Similarity=0.338  Sum_probs=20.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHh
Q 020259           40 YARILVVGAGGLGCELLKDLALS   62 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~   62 (328)
                      .-+|.|+|+|.+|..+++.|...
T Consensus         3 ~irvgIiG~G~VG~~~~~~l~~~   25 (332)
T 2ejw_A            3 ALKIALLGGGTVGSAFYNLVLER   25 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHT
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhC
Confidence            35799999999999999999765

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=88.74  E-value=0.41  Score=44.92  Aligned_cols=35  Identities=37%  Similarity=0.419  Sum_probs=31.3

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .| .+.+|.|||+|.+|..+|+.|...|+ ++..+|.
T Consensus       113 ~l-~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~  147 (380)
T 2o4c_A          113 DL-AERTYGVVGAGQVGGRLVEVLRGLGW-KVLVCDP  147 (380)
T ss_dssp             CG-GGCEEEEECCSHHHHHHHHHHHHTTC-EEEEECH
T ss_pred             cc-CCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            57 58999999999999999999999997 6888774

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=88.71  E-value=1.1  Score=39.02  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=29.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +++.++|.| .||+|.++++.|+..|. ++.++|.+.
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~   41 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKP   41 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            467788888 68999999999999998 688887543

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=88.61  E-value=0.91  Score=41.43  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=28.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ...+|+|+|+|++|..++..+...|-.+++.+|.
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~  204 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL  204 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            4568999999999999988888887678888863

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=88.61  E-value=0.42  Score=45.12  Aligned_cols=37  Identities=22%  Similarity=0.313  Sum_probs=32.8

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+ ...+|+|+|+|.+|..+++.+..+|. +++++|...
T Consensus       169 ~l-~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~  205 (401)
T 1x13_A          169 KV-PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRP  205 (401)
T ss_dssp             EE-CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCG
T ss_pred             Cc-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            36 58999999999999999999999998 799998654

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=88.60  E-value=0.39  Score=44.52  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=31.0

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .| ...+|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       165 ~l-~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~  199 (347)
T 1mx3_A          165 RI-RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDP  199 (347)
T ss_dssp             CC-TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECT
T ss_pred             CC-CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECC
Confidence            47 58999999999999999999999997 6888773

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	328
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	1e-112
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	3e-54
d1jw9b_	247	c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr	5e-17
d2vapa1	209	c.32.1.1 (A:23-231) Cell-division protein FtsZ {Ar	0.003

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  330 bits (847), Expect = e-112
 Identities = 167/312 (53%), Positives = 218/312 (69%), Gaps = 4/312 (1%)

Query: 6   PSRSRDLDKLLLRAGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFK 65
             R   + K L R+G    P FEP TE    L +  ++LV+GAGGLGCELLK+LALSGF+
Sbjct: 3   EGRWNHVKKFLERSGPFTHPDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFR 62

Query: 66  NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDIS 125
            + VIDMD I+VSNLNRQFLFR +D+G+PKAEVAA+ + +RV   N+VPHF +I+D + +
Sbjct: 63  QIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDT 122

Query: 126 FYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEGFKGHARVI 185
           FY  F+IIV GLDSI AR +IN      L    D      +I P++DGGTEGFKG+ARVI
Sbjct: 123 FYRQFHIIVCGLDSIIARRWING-MLISLLNYEDGVLDPSSIVPLIDGGTEGFKGNARVI 181

Query: 186 IPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHS---GKSFDPD 242
           +PG+T C ECT+ L+PPQV FP+CT+A  PR   HCIEY  +++W +      G   D D
Sbjct: 182 LPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGD 241

Query: 243 DPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIAS 302
           DPEH+QW++ ++++RA  + I GVTY LTQGVVK IIPA+ASTNA+I+A CA E  KIA+
Sbjct: 242 DPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIAT 301

Query: 303 GCSKTLSNYLTY 314
                L+NYL +
Sbjct: 302 SAYIPLNNYLVF 313

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  183 bits (466), Expect = 3e-54
 Identities = 43/214 (20%), Positives = 74/214 (34%), Gaps = 31/214 (14%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           A + ++ A   G E+LK+L L G  +  +ID +++   +    F  +   +GK +AE A 
Sbjct: 26  AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAM 85

Query: 101 KRVMERVSGVNIVPH---FCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYE 157
           + + E  S V+          + D D SF+  F ++V           +  V        
Sbjct: 86  EFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVLW------ 139

Query: 158 TDDKPREETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRT 217
                   +  P++   T G  G+ R+II    P  E      P      L      P  
Sbjct: 140 -------NSQIPLLICRTYGLVGYMRIIIKE-HPVIESH----PDNALEDLRLDKPFPEL 187

Query: 218 AAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVY 251
             H           + +     +  D  H  W+ 
Sbjct: 188 REHF----------QSYDLDHMEKKDHSHTPWIV 211

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

 Score = 77.3 bits (189), Expect = 5e-17
 Identities = 45/165 (27%), Positives = 68/165 (41%), Gaps = 13/165 (7%)

Query: 41  ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAA 100
           +R+L+VG GGLGC   + LA +G  NL ++D D + +SNL RQ L     VG+PK E A 
Sbjct: 31  SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESAR 90

Query: 101 KRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDD 160
             +      + I P    ++D +++     + +VL      A        C   +     
Sbjct: 91  DALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAK----- 145

Query: 161 KPREETIKPMVDGGTEGFKGHARVII-PGVTPCFECTIWLFPPQV 204
                   P+V G     +G   V       PC+ C   LF    
Sbjct: 146 -------VPLVSGAAIRMEGQITVFTYQDGEPCYRCLSRLFGENA 183

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 209

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 36.1 bits (83), Expect = 0.003
 Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 12/111 (10%)

Query: 32  ELRDDLQEY-ARILVVGAGGLGCELLKDLALSGFKNLEVI----DMDRIEVSNLNRQFLF 86
           EL + LQ+  A+I VVG GG G   +  L + G +  + +    D  ++  +  +++ L 
Sbjct: 6   ELLEYLQQTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILI 65

Query: 87  RMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGL 137
             +      A    K   E              E K     +D   I  GL
Sbjct: 66  GKKLTRGLGAGGNPKIGEEAA-------KESAEEIKAAIQDSDMVFITCGL 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	328
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	100.0
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	100.0
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.94
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.65
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.64
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.62
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.56
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.44
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.34
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.32
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.25
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.21
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.14
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.11
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.1
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.01
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.99
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.99
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.95
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.92
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.92
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.88
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.88
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.85
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.83
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.79
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.78
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.78
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.76
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.75
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.7
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.69
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.68
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.66
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.45
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.43
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.42
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.4
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.39
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.37
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.34
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.33
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.32
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.31
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.26
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.25
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.12
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.11
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.09
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.09
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.02
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.98
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.95
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.93
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.87
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.85
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.82
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.78
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	95.72
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.68
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.67
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.65
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.63
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.62
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.55
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.51
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.48
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.44
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.42
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.38
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.36
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.35
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.35
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.21
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.19
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.19
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.14
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	95.11
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	95.05
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.98
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.98
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	94.98
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.9
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.88
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	94.88
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.83
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.69
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.68
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	94.68
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.67
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.66
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.62
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	94.57
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.52
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	94.48
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	94.46
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.43
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	94.42
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.35
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	94.34
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	94.28
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	94.24
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.23
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	94.16
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.13
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.13
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	94.0
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.95
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	93.93
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.91
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	93.88
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.69
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	93.68
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.67
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.66
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	93.63
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.56
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	93.55
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	93.54
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	93.51
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.5
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.43
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.36
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.33
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.29
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.28
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.28
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	93.27
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.26
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.25
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.24
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.2
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	93.17
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	93.07
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	93.04
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	93.03
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.02
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.95
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	92.88
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	92.86
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	92.82
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.75
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	92.74
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	92.7
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.55
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	92.47
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	92.43
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	92.36
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	92.25
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	92.22
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	92.16
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	92.1
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	92.1
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.1
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	92.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	91.99
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	91.98
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.94
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	91.91
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	91.9
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	91.89
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	91.83
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	91.8
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	91.75
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	91.65
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	91.48
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	91.41
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	91.37
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	91.26
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.2
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	91.16
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.07
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	91.03
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	91.01
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	91.0
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	90.86
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	90.84
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.82
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	90.81
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	90.8
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	90.73
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	90.59
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	90.57
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	90.54
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	90.51
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	90.45
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	90.43
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	90.23
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	90.2
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	90.16
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	90.14
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.04
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	89.86
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.79
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	89.79
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.71
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	89.56
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	89.26
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	89.09
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	89.05
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	89.04
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.0
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	88.99
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	88.92
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	88.87
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	88.8
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.78
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	88.71
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	88.52
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	88.47
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.43
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.39
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	88.26
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	88.26
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	88.1
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	88.06
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	88.05
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	88.02
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	87.84
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.82
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	87.8
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	87.79
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	87.73
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	87.67
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	87.46
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	87.41
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	87.4
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	87.4
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	87.25
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	87.25
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	87.19
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	86.62
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	86.58
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	86.46
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	86.26
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	86.25
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	86.23
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	86.15
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	86.03
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	85.97
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	85.97
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.95
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	85.92
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	85.67
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	85.55
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	85.55
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	85.54
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	85.53
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	85.34
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	85.27
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	85.26
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	85.25
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	85.2
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	85.17
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	84.93
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	84.91
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	84.72
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	84.5
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	84.35
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	84.29
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.15
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	84.05
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	84.03
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	83.88
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	83.69
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	83.57
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	83.56
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	83.42
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	83.35
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	83.13
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	82.99
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.96
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	82.95
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	82.94
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	82.94
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	82.89
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	82.51
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	82.43
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	82.35
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	82.23
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	82.13
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	82.09
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	82.01
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	81.97
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	81.32
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	81.03
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	80.82
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	80.8
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	80.41
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.39

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-65  Score=491.00  Aligned_cols=314  Identities=54%  Similarity=0.961  Sum_probs=294.9

Q ss_pred             CCccchhhhhhhhcCCCCCCCCCCccHHH-HHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccc
Q 020259            5 APSRSRDLDKLLLRAGNLVGPTFEPGTEL-RDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQ   83 (328)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~rq~~l~G~~~-q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~   83 (328)
                      .+|||.+++.++.|+++|.++.+.+|.+. |.+| +++||+|||+||+|||++|||+++|||+|+|+|+|.|+.+||+||
T Consensus         2 ~~~~~~~~~~~~~r~~~~~~~~~~~~~e~~~~~l-~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQ   80 (426)
T d1yovb1           2 WEGRWNHVKKFLERSGPFTHPDFEPSTESLQFLL-DTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQ   80 (426)
T ss_dssp             CTTTTHHHHHHHHSCCTTCCTTCCCCSSHHHHHH-HHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTC
T ss_pred             cccchhhHHHHHhcCCCCcCcccccChHHHHHHH-hcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccc
Confidence            47999999999999999999999999555 7889 599999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCCcchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCcc
Q 020259           84 FLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDKDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPR  163 (328)
Q Consensus        84 ~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~  163 (328)
                      |||+++|+|++||++++++++++||+++|.++...+.+.+.+++++||+||+|+|+.++|.++|+.|+.+.++. ++..+
T Consensus        81 flf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c~~l~k~~-~~~~~  159 (426)
T d1yovb1          81 FLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGMLISLLNYE-DGVLD  159 (426)
T ss_dssp             TTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHHHHTCCEE-TTEEC
T ss_pred             ccCChhHcCcHHHHHHHHHHHhhCCCCceEeeeccccchHHHHHHhcchheeccCcHHHHHHHHHHHHHhhccc-ccccc
Confidence            99999999999999999999999999999999999988888999999999999999999999999998765543 23334


Q ss_pred             ccccceEEEeeecceeeeEEEEcCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhc---CCCCC
Q 020259          164 EETIKPMVDGGTEGFKGHARVIIPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHS---GKSFD  240 (328)
Q Consensus       164 ~~~~~p~i~~~~~G~~G~v~~~~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~  240 (328)
                      ++.++|+|++++.|+.|++++++|+.++||+|.++..|++..+|.|+++++|+.++||+.|+..+.|...+.   ..+++
T Consensus       160 ~~~~iPlI~gg~~G~~G~~~vi~p~~t~Cy~C~~~~~p~~~~~p~CTi~~~P~~~~hci~~ak~l~~~~~~~~~~~~~~d  239 (426)
T d1yovb1         160 PSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQPFGEGVPLD  239 (426)
T ss_dssp             GGGCCCEEEEEEETTEEEEEEECTTTSCCGGGGGGGSCCCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHSCTTSTTCCCC
T ss_pred             cccCCceEEeEEeeeEEEEEEECCCCCCCcCcCCCCCCCCCCCCcccccCCCCCchheeehhhhhcccccccccccCCCC
Confidence            567899999999999999999999999999999999999999999999999999999999999999988763   45778


Q ss_pred             CCChhHHHHHHHHHHHHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCceEEeecCccc
Q 020259          241 PDDPEHMQWVYSEAVKRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSNYLTYAQLSFF  320 (328)
Q Consensus       241 ~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N~~~fdg~~~~  320 (328)
                      .++.++++++++.+++++..|++++.+...+++++++++|+++||+|||||+++||++|+||+++.|++|+++|++..+.
T Consensus       240 ~dd~~~i~~i~~~a~~ra~~~~I~~~~~~~~k~ia~nIIPaiatTnAIVagl~~~E~iK~lt~~~~p~~n~~~~~~~~~~  319 (426)
T d1yovb1         240 GDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAYIPLNNYLVFNDVDGL  319 (426)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHCSSCCCCSEEEEECSBSC
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhcCCccccceEEEecCCCc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999998764

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-54  Score=422.11  Aligned_cols=157  Identities=24%  Similarity=0.276  Sum_probs=148.0

Q ss_pred             CCCCCCCCCCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHH
Q 020259           19 AGNLVGPTFEPGTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV   98 (328)
Q Consensus        19 ~~~~~rq~~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a   98 (328)
                      .+|||||+|+||.++|++| ++++|+|||+||+|+|+||||+++|||+|||+|+|.|+.+|++||||++++|+|++||++
T Consensus         5 e~rYdRQlrlwG~~gQ~~L-~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~   83 (529)
T d1yova1           5 EQKYDRQLRLWGDHGQEAL-ESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEA   83 (529)
T ss_dssp             HHHTHHHHHHHHHHHHHHH-HHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHH
T ss_pred             hhhhhHHHHhhhHHHHHHH-hCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHH
Confidence            4589999999999999999 699999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCcEEEEEecccCC---cchhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeee
Q 020259           99 AAKRVMERVSGVNIVPHFCRIED---KDISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGT  175 (328)
Q Consensus        99 ~~~~l~~lnp~v~v~~~~~~~~~---~~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~  175 (328)
                      ++++|+++||+++++.+...+.+   .+.++++++|+||+|.++.+.+..++++|             +++++|+|.+++
T Consensus        84 ~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c-------------~~~~ip~i~~~~  150 (529)
T d1yova1          84 AMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVATQLPESTSLRLADVL-------------WNSQIPLLICRT  150 (529)
T ss_dssp             HHHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHH-------------HHHTCCEEEEEE
T ss_pred             HHHHHHHhCCCCcEEEEcCCchhhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHH-------------HHcCCCEEEEec
Confidence            99999999999999888776543   45788999999999999999999999999             677999999999


Q ss_pred             cceeeeEEEEcCCC
Q 020259          176 EGFKGHARVIIPGV  189 (328)
Q Consensus       176 ~G~~G~v~~~~p~~  189 (328)
                      .|+.|++++++|++
T Consensus       151 ~G~~G~v~~~~~~~  164 (529)
T d1yova1         151 YGLVGYMRIIIKEH  164 (529)
T ss_dssp             ETTEEEEEEECSCE
T ss_pred             cCCEEEEEEEeCCc
Confidence            99999999999874

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.6e-45  Score=326.04  Aligned_cols=224  Identities=25%  Similarity=0.414  Sum_probs=195.0

Q ss_pred             CCCCCCCCCc--cHHHHHHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHH
Q 020259           20 GNLVGPTFEP--GTELRDDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAE   97 (328)
Q Consensus        20 ~~~~rq~~l~--G~~~q~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~   97 (328)
                      +||+||++||  |.++|+|| ++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+++||+||++|+++|+|++||+
T Consensus         9 ~ry~Rqi~l~~~g~~~Q~kL-~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~   87 (247)
T d1jw9b_           9 LRYNRQIILRGFDFDGQEAL-KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVE   87 (247)
T ss_dssp             HHTHHHHTSTTTHHHHHHHH-HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHH
T ss_pred             HHhhceeccccCCHHHHHHH-hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHH
Confidence            5899999997  89999999 69999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCcEEEEEecccCCc-chhhhccCCEEEecCCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeec
Q 020259           98 VAAKRVMERVSGVNIVPHFCRIEDK-DISFYNDFNIIVLGLDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTE  176 (328)
Q Consensus        98 a~~~~l~~lnp~v~v~~~~~~~~~~-~~~~~~~~dvVi~~~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~  176 (328)
                      +++++|+++||+++++.+...+... ...++..+|+|++|+|+...+.++|+.|             +++++|++.++..
T Consensus        88 ~a~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~~divid~~d~~~~~~~in~~~-------------~~~~ip~i~g~~~  154 (247)
T d1jw9b_          88 SARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGC-------------FAAKVPLVSGAAI  154 (247)
T ss_dssp             HHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHH-------------HHHTCCEEEEEEE
T ss_pred             HHHHHHHHhhcccchhhhhhhhhhccccccccccceeeeccchhhhhhhHHHHH-------------HHhCCCccccccc
Confidence            9999999999999999999887654 3667789999999999999999999999             6778999999999


Q ss_pred             ceeeeEEEE-cCCCCCccccccCCCCCCCCCCcccccCCCCChhhHHHHHHHHhhhhhhcCCCCCCCChhHHHHHHHHHH
Q 020259          177 GFKGHARVI-IPGVTPCFECTIWLFPPQVKFPLCTLAETPRTAAHCIEYAHLIKWDEVHSGKSFDPDDPEHMQWVYSEAV  255 (328)
Q Consensus       177 G~~G~v~~~-~p~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  255 (328)
                      |+.|++..+ .|+.++|+.|.....+...  ..|                                              
T Consensus       155 ~~~g~~~~~~~~~~~~c~~c~~~~~~~~~--~~~----------------------------------------------  186 (247)
T d1jw9b_         155 RMEGQITVFTYQDGEPCYRCLSRLFGENA--LTC----------------------------------------------  186 (247)
T ss_dssp             BTEEEEEEECCCTTCCCTHHHHTTCCC-----------------------------------------------------
T ss_pred             ccccceEEEeecCCccccccccccccccc--CCc----------------------------------------------
Confidence            999998865 4778999999864332100  000                                              


Q ss_pred             HHHHHhCCCCCchhhhHhhhhccCccccchhHHHHHHHHHHHHHHHhcCCCCCCc-eEEeecCccccccccc
Q 020259          256 KRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLKIASGCSKTLSN-YLTYAQLSFFASAMQF  326 (328)
Q Consensus       256 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~p~~aivGG~~aqEviK~it~~~~pi~N-~~~fdg~~~~~~~~~~  326 (328)
                         .                  ..+.++|+++++|+++|+|++|+|+|...|+.| ++.||..+...+.+++
T Consensus       187 ---~------------------~~g~~~p~~~~v~~~~a~e~ik~l~g~~~~~~~~~~~~d~~~~~~~~~~~  237 (247)
T d1jw9b_         187 ---V------------------EAGVMAPLIGVIGSLQAMEAIKMLAGYGKPASGKIVMYDAMTCQFREMKL  237 (247)
T ss_dssp             -----------------------CCBCHHHHHHHHHHHHHHHHHHHHTCSCCCBSEEEEEETTTTEEEEEEC
T ss_pred             ---c------------------cCCcccccchhHHHHHHHHHHHHHhcCCCcCcCcEEEEECCCCEEEEEec
Confidence               0                  013478999999999999999999999888665 6689999887766654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.94  E-value=3.6e-05  Score=58.13  Aligned_cols=84  Identities=17%  Similarity=0.120  Sum_probs=60.8

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      | ++.+|+|||.|.+|..-++.|..+|. ++++++.+.-                     +...+.+.+  ..  ++...
T Consensus        10 l-~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~---------------------~~~~~~~~~--~~--i~~~~   62 (113)
T d1pjqa1          10 L-RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFI---------------------PQFTVWANE--GM--LTLVE   62 (113)
T ss_dssp             C-BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCC---------------------HHHHHHHTT--TS--CEEEE
T ss_pred             e-CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC---------------------hHHHHHHhc--CC--ceeec
Confidence            5 58999999999999999999999998 7999875431                     112222221  23  33333


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      ...   ..+.+.++++|+.++++.+....+...|
T Consensus        63 ~~~---~~~dl~~~~lv~~at~d~~~n~~i~~~a   93 (113)
T d1pjqa1          63 GPF---DETLLDSCWLAIAATDDDTVNQRVSDAA   93 (113)
T ss_dssp             SSC---CGGGGTTCSEEEECCSCHHHHHHHHHHH
T ss_pred             cCC---CHHHhCCCcEEeecCCCHHHHHHHHHHH
Confidence            333   3456789999999999988888888888

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=4.4e-05  Score=62.62  Aligned_cols=82  Identities=21%  Similarity=0.257  Sum_probs=58.0

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      + ++++|+|+|+||.|..++..|...|+++|+|++.+.                --..|+..+++++..-.+.. +... 
T Consensus        16 l-~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~----------------~~~~~~~~l~~~~~~~~~~~-~~~~-   76 (182)
T d1vi2a1          16 I-KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD----------------EFFDKALAFAQRVNENTDCV-VTVT-   76 (182)
T ss_dssp             C-TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS----------------TTHHHHHHHHHHHHHHSSCE-EEEE-
T ss_pred             c-CCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch----------------HHHHHHHHHHHHHHhhcCcc-eEee-
Confidence            5 578999999999999999999999999999997431                01145666777777655433 2222 


Q ss_pred             cccCC--cchhhhccCCEEEecCC
Q 020259          117 CRIED--KDISFYNDFNIIVLGLD  138 (328)
Q Consensus       117 ~~~~~--~~~~~~~~~dvVi~~~d  138 (328)
                       .+.+  .-.+.+..+|+||+|+.
T Consensus        77 -~~~~~~~~~~~~~~~diiIN~Tp   99 (182)
T d1vi2a1          77 -DLADQQAFAEALASADILTNGTK   99 (182)
T ss_dssp             -ETTCHHHHHHHHHTCSEEEECSS
T ss_pred             -ecccccchhhhhcccceeccccC
Confidence             2221  12345678999999976

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.64  E-value=6e-05  Score=60.58  Aligned_cols=74  Identities=23%  Similarity=0.295  Sum_probs=55.0

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      | ++++|+|||+|.+|..++++|...|+++++++...                   ..|++.+++.+.     .++.   
T Consensus        22 l-~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt-------------------~~ka~~l~~~~~-----~~~~---   73 (159)
T d1gpja2          22 L-HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT-------------------YERAVELARDLG-----GEAV---   73 (159)
T ss_dssp             C-TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS-------------------HHHHHHHHHHHT-----CEEC---
T ss_pred             c-ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc-------------------HHHHHHHHHhhh-----cccc---
Confidence            6 68999999999999999999999999999997422                   247776666542     2221   


Q ss_pred             cccCCcchhhhccCCEEEecCCCH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSI  140 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~  140 (328)
                       .+. .-.+.+.++|+||.|+...
T Consensus        74 -~~~-~~~~~l~~~Divi~atss~   95 (159)
T d1gpja2          74 -RFD-ELVDHLARSDVVVSATAAP   95 (159)
T ss_dssp             -CGG-GHHHHHHTCSEEEECCSSS
T ss_pred             -cch-hHHHHhccCCEEEEecCCC
Confidence             122 2355678999999998754

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.62  E-value=0.00011  Score=59.49  Aligned_cols=91  Identities=20%  Similarity=0.195  Sum_probs=59.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHH--HhhCCCcEEEEEec
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRV--MERVSGVNIVPHFC  117 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l--~~lnp~v~v~~~~~  117 (328)
                      +++|.|||+|.+|+.+|..|+..|. .++++|.+.                   .+.+.+.+.-  ....|..+......
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDA-------------------QRIKEIQDRGAIIAEGPGLAGTAHPD   60 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH-------------------HHHHHHHHHTSEEEESSSCCEEECCS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHcCCCchhhhhhhhhhhhh
Confidence            4789999999999999999999997 899987543                   2332222210  01122333333222


Q ss_pred             ccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          118 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .......+.++++|+||.|+.....+..+.++.
T Consensus        61 ~~~~~~~e~~~~aD~iii~v~~~~~~~~~~~i~   93 (184)
T d1bg6a2          61 LLTSDIGLAVKDADVILIVVPAIHHASIAANIA   93 (184)
T ss_dssp             EEESCHHHHHTTCSEEEECSCGGGHHHHHHHHG
T ss_pred             hhhhhhHhHhcCCCEEEEEEchhHHHHHHHHhh
Confidence            223345677899999999988877766666554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.56  E-value=0.00012  Score=58.72  Aligned_cols=79  Identities=13%  Similarity=0.032  Sum_probs=53.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      +++|+|+|+|.+|..+|++|+..|. +++++|.+.                   .|++.++    +-.+...+.......
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~-------------------~~a~~l~----~~~~~~~~~~~~~~~   57 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL-------------------ESAKKLS----AGVQHSTPISLDVND   57 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCH-------------------HHHHHHH----TTCTTEEEEECCTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCh-------------------HHHHHHH----hcccccccccccccc
Confidence            6899999999999999999999998 799998443                   3444433    334443333322222


Q ss_pred             CCcchhhhccCCEEEecCCCHHH
Q 020259          120 EDKDISFYNDFNIIVLGLDSIEA  142 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d~~~~  142 (328)
                      .......+...|+++.++.....
T Consensus        58 ~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1          58 DAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             HHHHHHHHTTSSEEEECSCGGGH
T ss_pred             hhhhHhhhhccceeEeeccchhh
Confidence            22335667889999888765443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.44  E-value=0.00029  Score=54.28  Aligned_cols=82  Identities=17%  Similarity=0.226  Sum_probs=54.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      +|+|+|+|.+|..+++.|...|. .++++|.|.                   .+++    ++++.. +..  ....+..+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~-------------------~~~~----~~~~~~-~~~--vi~Gd~~~   54 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK-------------------DICK----KASAEI-DAL--VINGDCTK   54 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHH----HHHHHC-SSE--EEESCTTS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCCh-------------------hhhh----hhhhhh-hhh--hccCcccc
Confidence            69999999999999999999997 799999654                   2333    233222 222  33333332


Q ss_pred             c---chhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          122 K---DISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       122 ~---~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .   ...-++++|.++.++++.+....+...+
T Consensus        55 ~~~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~   86 (132)
T d1lssa_          55 IKTLEDAGIEDADMYIAVTGKEEVNLMSSLLA   86 (132)
T ss_dssp             HHHHHHTTTTTCSEEEECCSCHHHHHHHHHHH
T ss_pred             hhhhhhcChhhhhhhcccCCcHHHHHHHHHHH
Confidence            1   2334578999999988877655444444

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.34  E-value=0.00025  Score=57.21  Aligned_cols=33  Identities=27%  Similarity=0.609  Sum_probs=30.8

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ++++|+|+|+||.|..++..|...|+++|+|++
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~n   48 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYA   48 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEec
Confidence            477899999999999999999999999999975

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=3.5e-05  Score=61.17  Aligned_cols=36  Identities=33%  Similarity=0.538  Sum_probs=32.8

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      | ++.+|+|||.|.+|.+-++.|..+|. ++|++.++.
T Consensus        11 l-~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap~~   46 (150)
T d1kyqa1          11 L-KDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDL   46 (150)
T ss_dssp             C-TTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEE
T ss_pred             e-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            6 68999999999999999999999997 899997653

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.25  E-value=0.00018  Score=57.31  Aligned_cols=76  Identities=13%  Similarity=0.132  Sum_probs=52.2

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh----CCCcEEEE
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER----VSGVNIVP  114 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l----np~v~v~~  114 (328)
                      +..||.|||+|.+|+.+|-.|++.|+.++.|+|-                   .+.|++..+.-++..    +....+..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~-------------------~~~~~~g~a~Dl~~~~~~~~~~~~~~~   66 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDV-------------------VKGMPEGKALDLSHVTSVVDTNVSVRA   66 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECS-------------------SSSHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEe-------------------ccccchhHHHHHhhhccccCCeeEEec
Confidence            5789999999999999999999999999999982                   223555555555542    21222222


Q ss_pred             EecccCCcchhhhccCCEEEecCC
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      .     ...++-++++|+||.+..
T Consensus        67 ~-----~~~~~~~~~adiVvitag   85 (154)
T d1pzga1          67 E-----YSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             E-----CSHHHHHTTCSEEEECCS
T ss_pred             c-----CchhhhhcCCCeEEEecc
Confidence            1     112455688999987653

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.0006  Score=54.89  Aligned_cols=73  Identities=27%  Similarity=0.288  Sum_probs=52.9

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ++++|+|+|+||.+..++..|...|+ +|+|++          |.         ..|++.+++.+.+.++   +....  
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~-~i~I~n----------Rt---------~~ka~~l~~~~~~~~~---~~~~~--   71 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITN----------RT---------VSRAEELAKLFAHTGS---IQALS--   71 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEC----------SS---------HHHHHHHHHHTGGGSS---EEECC--
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccce-EEEecc----------ch---------HHHHHHHHHHHhhccc---ccccc--
Confidence            47899999999999999999999998 699974          22         2578888877776552   22221  


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      +   +......+|+||+|+.-
T Consensus        72 ~---~~~~~~~~dliIN~Tp~   89 (170)
T d1nyta1          72 M---DELEGHEFDLIINATSS   89 (170)
T ss_dssp             S---GGGTTCCCSEEEECCSC
T ss_pred             c---ccccccccceeeccccc
Confidence            1   12223578999999763

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.14  E-value=0.0015  Score=51.81  Aligned_cols=77  Identities=25%  Similarity=0.309  Sum_probs=51.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      ||.|||+|-+|+.+|+.|...|. +++.+|.+.                   .+    .+++++... +.  ..     .
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~-------------------~~----~~~a~~~~~-~~--~~-----~   49 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQ-------------------ST----CEKAVERQL-VD--EA-----G   49 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH-------------------HH----HHHHHHTTS-CS--EE-----E
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCc-------------------hH----HHHHHHhhc-cc--ee-----e
Confidence            69999999999999999999998 788877432                   11    222233221 11  00     1


Q ss_pred             cchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          122 KDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       122 ~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .+.+.++++|+||.|+........++++.
T Consensus        50 ~~~~~~~~~DiIilavp~~~~~~vl~~l~   78 (165)
T d2f1ka2          50 QDLSLLQTAKIIFLCTPIQLILPTLEKLI   78 (165)
T ss_dssp             SCGGGGTTCSEEEECSCHHHHHHHHHHHG
T ss_pred             eecccccccccccccCcHhhhhhhhhhhh
Confidence            23456789999999987656666666654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.11  E-value=0.00011  Score=59.72  Aligned_cols=122  Identities=15%  Similarity=0.133  Sum_probs=65.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc-
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR-  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~-  118 (328)
                      .++|.+||+|.+|..+|++|...|. +++++|.+.=....+..+..-.....|-..++...+.+.  .+.+-+...+.. 
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~ii~~~~~~~   78 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLK--KPRRIILLVKAGQ   78 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBC--SSCEEEECSCTTH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhc--ccceEEEecCchH
Confidence            5789999999999999999999998 789998554322222222111111112222222222211  112222221111 


Q ss_pred             -cCC---cchhhhccCCEEEec-CCCHHHHHHHHHHHHHhhhccCCCCccccccceEEEeeecc
Q 020259          119 -IED---KDISFYNDFNIIVLG-LDSIEARSYINAVACSFLEYETDDKPREETIKPMVDGGTEG  177 (328)
Q Consensus       119 -~~~---~~~~~~~~~dvVi~~-~d~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~p~i~~~~~G  177 (328)
                       +.+   .-...++.-++||++ +-++...+.+.+.+             .+.++.++++...|
T Consensus        79 ~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~-------------~~~g~~~ldapvsG  129 (176)
T d2pgda2          79 AVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDL-------------KDKGILFVGSGVSG  129 (176)
T ss_dssp             HHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHH-------------HHTTCEEEEEEEES
T ss_pred             HHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHH-------------HhcCCceecccccc
Confidence             000   012234455677776 44555555566665             46788888887765

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.10  E-value=0.0019  Score=48.95  Aligned_cols=61  Identities=21%  Similarity=0.371  Sum_probs=43.9

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER  106 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l  106 (328)
                      +.++..++|+|||.|.+|.|+|..|...|. ++|+++...-   =+.+       -.++.-++.+.+.+++.
T Consensus        25 ~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~---~l~~-------~~~~~~~~~~~~~l~~~   85 (121)
T d1d7ya2          25 AGLRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPR---LMSR-------AAPATLADFVARYHAAQ   85 (121)
T ss_dssp             HHCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS---TTTT-------TSCHHHHHHHHHHHHTT
T ss_pred             HhhhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccc---cccc-------cCCHHHHHHHHHHHHHC
Confidence            444346899999999999999999999997 8999985431   1111       13344566777777765

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00055  Score=54.22  Aligned_cols=83  Identities=18%  Similarity=0.250  Sum_probs=54.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      ||+|+|+|++|+.++..|+.+|. .+++++.+.-....+...                       ........  ..+..
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~-----------------------~~~~~~~~--~~~~~   55 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLV-----------------------ETDGSIFN--ESLTA   55 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEE-----------------------CTTSCEEE--EEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccc-----------------------cCCccccc--ccccc
Confidence            79999999999999999999998 899998655322221110                       00111000  11112


Q ss_pred             cchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          122 KDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       122 ~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      ...+....+|+|+.++-.......+..+.
T Consensus        56 ~~~~~~~~~D~iii~vka~~~~~~~~~l~   84 (167)
T d1ks9a2          56 NDPDFLATSDLLLVTLKAWQVSDAVKSLA   84 (167)
T ss_dssp             SCHHHHHTCSEEEECSCGGGHHHHHHHHH
T ss_pred             chhhhhcccceEEEeecccchHHHHHhhc
Confidence            24556678999999988877766666554

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.99  E-value=0.00048  Score=54.54  Aligned_cols=74  Identities=14%  Similarity=0.198  Sum_probs=52.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh----CCCcEEEEE
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER----VSGVNIVPH  115 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l----np~v~v~~~  115 (328)
                      +.||.|||+|.+|+.++-.|++.++.+|.|+|-                   ...|++..+.-++..    +...++...
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di-------------------~~~~~~g~a~Dl~~~~~~~~~~~~v~~~   63 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDI-------------------VKNMPHGKALDTSHTNVMAYSNCKVSGS   63 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-------------------SSSHHHHHHHHHHTHHHHHTCCCCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEec-------------------cCCcceeeecchhhhccccCCCcEEEec
Confidence            479999999999999999999999999999982                   223555555555443    223333332


Q ss_pred             ecccCCcchhhhccCCEEEecCC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                            .+.+-++++|+||.+..
T Consensus        64 ------~~~~~~~~advvvitag   80 (150)
T d1t2da1          64 ------NTYDDLAGADVVIVTAG   80 (150)
T ss_dssp             ------CCGGGGTTCSEEEECCS
T ss_pred             ------ccccccCCCcEEEEecc
Confidence                  23455689999987755

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.99  E-value=0.0012  Score=52.45  Aligned_cols=30  Identities=30%  Similarity=0.505  Sum_probs=27.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ||.+||+|-+|..+|++|+.+|. +++++|.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~   31 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDR   31 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeC
Confidence            59999999999999999999998 6888773

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.95  E-value=0.001  Score=53.72  Aligned_cols=73  Identities=19%  Similarity=0.238  Sum_probs=53.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ++++|+|+|+||.+-.++..|.. |..+|+|+.          |.         ..|++.+++.+....   ++......
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~-~~~~i~I~n----------R~---------~~~a~~l~~~~~~~~---~~~~~~~~   73 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQ-AQQNIVLAN----------RT---------FSKTKELAERFQPYG---NIQAVSMD   73 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHH-TTCEEEEEE----------SS---------HHHHHHHHHHHGGGS---CEEEEEGG
T ss_pred             CCCEEEEECCcHHHHHHHHHHcc-cCceeeecc----------ch---------HHHHHHHHHHHhhcc---ccchhhhc
Confidence            57899999999999999999986 668999974          32         268888888887654   23332221


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                           ...+..+|+||+|+..
T Consensus        74 -----~~~~~~~diiIN~tp~   89 (171)
T d1p77a1          74 -----SIPLQTYDLVINATSA   89 (171)
T ss_dssp             -----GCCCSCCSEEEECCCC
T ss_pred             -----cccccccceeeecccc
Confidence                 1224689999999764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.92  E-value=0.0051  Score=46.78  Aligned_cols=33  Identities=24%  Similarity=0.553  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ++++|+|+|.+|..+++.|...|. .++++|.|.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~   33 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINE   33 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcH
Confidence            468999999999999999999998 789998665

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.92  E-value=0.001  Score=52.98  Aligned_cols=34  Identities=26%  Similarity=0.541  Sum_probs=29.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      .+|.+||+|-+|+.+|++|...|. ++.++|.+.-
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~   35 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQS   35 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchh
Confidence            369999999999999999999998 7999886543

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.88  E-value=0.00098  Score=52.37  Aligned_cols=76  Identities=20%  Similarity=0.323  Sum_probs=53.6

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh----CCCcEEEEE
Q 020259           42 RILVVGA-GGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER----VSGVNIVPH  115 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l----np~v~v~~~  115 (328)
                      ||.|||+ |.+|+.+|-.|+..|. +++.|+|-+.                 +..|++..+.-|...    .+.+++...
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~-----------------~~~~~~g~a~Dl~~~~~~~~~~~~~~~~   64 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH-----------------SINKLEGLREDIYDALAGTRSDANIYVE   64 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG-----------------GHHHHHHHHHHHHHHHTTSCCCCEEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh-----------------hhHhhhcccccchhcccccccCCccccC
Confidence            6999996 9999999999999996 7999998431                 124666666666653    334455444


Q ss_pred             ecccCCcchhhhccCCEEEecCC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      ..    .+.+-++++|+||.+..
T Consensus        65 ~~----~d~~~l~~aDvVVitAG   83 (145)
T d1hyea1          65 SD----ENLRIIDESDVVIITSG   83 (145)
T ss_dssp             ET----TCGGGGTTCSEEEECCS
T ss_pred             Cc----chHHHhccceEEEEecc
Confidence            32    23456789999987743

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.88  E-value=0.0016  Score=51.13  Aligned_cols=76  Identities=22%  Similarity=0.231  Sum_probs=51.3

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCc--EEEEE
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGV--NIVPH  115 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v--~v~~~  115 (328)
                      ...||.|||+|.+|+.+|-.|++.|. .+|.|+|-+.                   .|++..+.-|....+..  .+...
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~-------------------~~~~g~a~Dl~~~~~~~~~~~~~~   65 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE-------------------SKAIGDAMDFNHGKVFAPKPVDIW   65 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH-------------------HHHHHHHHHHHHHTTSSSSCCEEE
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc-------------------ccccchhccHhhCccccCCCeEEE
Confidence            36789999999999999999999997 4799998322                   44555555565532221  11111


Q ss_pred             ecccCCcchhhhccCCEEEecCC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      .     .+.+.++++|+||.+..
T Consensus        66 ~-----~d~~~l~daDvvvitag   83 (148)
T d1ldna1          66 H-----GDYDDCRDADLVVICAG   83 (148)
T ss_dssp             E-----CCGGGTTTCSEEEECCS
T ss_pred             E-----CCHHHhccceeEEEecc
Confidence            1     23466789999987644

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.85  E-value=0.0015  Score=51.32  Aligned_cols=75  Identities=16%  Similarity=0.266  Sum_probs=49.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC--CCcEEEEEe
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV--SGVNIVPHF  116 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln--p~v~v~~~~  116 (328)
                      ..||.|||+|.+|+.+|-.|+..|. .+|.|+|-+                   +.|+++.+.-|+..-  .........
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~-------------------~~~~~g~~~Dl~~a~~~~~~~~~~~~   61 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN-------------------EAKVKADQIDFQDAMANLEAHGNIVI   61 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHHHGGGSSSCCEEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc-------------------cchhhhHHHhhhccccccCCccceec
Confidence            3689999999999999999999996 689998732                   244544444454421  222222222


Q ss_pred             cccCCcchhhhccCCEEEecCC
Q 020259          117 CRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                           .+.+-++++|+||.+..
T Consensus        62 -----~d~~~l~~adiVVitaG   78 (146)
T d1hyha1          62 -----NDWAALADADVVISTLG   78 (146)
T ss_dssp             -----SCGGGGTTCSEEEECCS
T ss_pred             -----cCHHHhccccEEEEecc
Confidence                 23455789999987755

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.83  E-value=0.0018  Score=50.76  Aligned_cols=75  Identities=16%  Similarity=0.296  Sum_probs=50.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh---hCCCcEEEE
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME---RVSGVNIVP  114 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~---lnp~v~v~~  114 (328)
                      ++.||.|||+|.+|+.+|..|+..|. .+|.|+|-+.                   .|++..+.-|..   .++...+. 
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~-------------------~~~~g~a~Dl~~a~~~~~~~~~~-   63 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK-------------------DRTKGDALDLEDAQAFTAPKKIY-   63 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH-------------------HHHHHHHHHHHGGGGGSCCCEEE-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc-------------------chhHHHHHHHhccccccCCceEe-
Confidence            36799999999999999999999996 5899998432                   234433434433   33333322 


Q ss_pred             EecccCCcchhhhccCCEEEecCCC
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                       ..     +.+-++++|+||.+...
T Consensus        64 -~~-----d~~~~~~adivvitag~   82 (146)
T d1ez4a1          64 -SG-----EYSDCKDADLVVITAGA   82 (146)
T ss_dssp             -EC-----CGGGGTTCSEEEECCCC
T ss_pred             -ec-----cHHHhccccEEEEeccc
Confidence             11     33456899999887553

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00077  Score=53.83  Aligned_cols=81  Identities=21%  Similarity=0.299  Sum_probs=54.0

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEE
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIV  113 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~  113 (328)
                      .++ +..||.|||+|.+|+.+|-.|+..|.. +|.|+|.+                   ..|+++.+.-|+..-+.....
T Consensus        15 ~~~-~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~-------------------~~~a~g~alDl~~~~~~~~~~   74 (159)
T d2ldxa1          15 DKL-SRCKITVVGVGDVGMACAISILLKGLADELALVDAD-------------------TDKLRGEALDLQHGSLFLSTP   74 (159)
T ss_dssp             CCC-CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC-------------------HHHHHHHHHHHHHTTTTCSCC
T ss_pred             ccC-CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------chhhhccHHHHhCcchhcCCC
Confidence            346 678999999999999999999999985 69998732                   246666666666532222111


Q ss_pred             EEecccCCcchhhhccCCEEEecCC
Q 020259          114 PHFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       114 ~~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      ..   +...+.+.++++|+||.+..
T Consensus        75 ~~---~~~~d~~~~~~adivvitag   96 (159)
T d2ldxa1          75 KI---VFGKDYNVSANSKLVIITAG   96 (159)
T ss_dssp             EE---EEESSGGGGTTEEEEEECCS
T ss_pred             eE---EeccchhhhccccEEEEecc
Confidence            00   11123456688999977644

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.78  E-value=0.005  Score=48.84  Aligned_cols=80  Identities=18%  Similarity=0.160  Sum_probs=50.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIE  120 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~  120 (328)
                      +|+|||+|-+|+.+|++|...|.. +|+.+|.+.-                       ..+.+++.+--..+      ..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~-----------------------~~~~a~~~~~~~~~------~~   53 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE-----------------------SISKAVDLGIIDEG------TT   53 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHH-----------------------HHHHHHHTTSCSEE------ES
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChH-----------------------HHHHHHHhhcchhh------hh
Confidence            699999999999999999999974 6777774321                       12333333211111      11


Q ss_pred             CcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          121 DKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       121 ~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .........+|+|+.|+........++++.
T Consensus        54 ~~~~~~~~~~dlIila~p~~~~~~vl~~l~   83 (171)
T d2g5ca2          54 SIAKVEDFSPDFVMLSSPVRTFREIAKKLS   83 (171)
T ss_dssp             CGGGGGGTCCSEEEECSCHHHHHHHHHHHH
T ss_pred             hhhhhhccccccccccCCchhhhhhhhhhh
Confidence            122333357899999988666666666655

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.78  E-value=0.0023  Score=51.02  Aligned_cols=78  Identities=19%  Similarity=0.217  Sum_probs=53.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ++.||.|||+|.+|+.+|-.|+..|. .+|.|+|-+                   +.++++-+.-|+...+.......  
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~-------------------~~~a~g~alDl~h~~~~~~~~~~--   77 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVDVL-------------------EDKLKGEMMDLQHGSLFLQTPKI--   77 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGCCCSEE--
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec-------------------cchhHHHHHHHhccccccCCCeE--
Confidence            57899999999999999999999998 679999833                   35666666666552221111010  


Q ss_pred             ccCCcchhhhccCCEEEecCC
Q 020259          118 RIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d  138 (328)
                       ....+.+-++++|+||.+..
T Consensus        78 -~~~~d~~~~~~adiVVitAg   97 (160)
T d1i0za1          78 -VADKDYSVTANSKIVVVTAG   97 (160)
T ss_dssp             -EECSSGGGGTTCSEEEECCS
T ss_pred             -EeccchhhcccccEEEEecC
Confidence             11224556789999877644

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.76  E-value=0.0029  Score=49.43  Aligned_cols=75  Identities=17%  Similarity=0.243  Sum_probs=49.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           41 ARILVVGA-GGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        41 ~~VliiG~-gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +||.|||+ |.+|+.+|-.|+..|. ++|.|+|-+                   +.|+++  ..+...-+......... 
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~-------------------~~~~~a--~Dl~~~~~~~~~~~~~~-   58 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIA-------------------HTPGVA--ADLSHIETRATVKGYLG-   58 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESS-------------------SHHHHH--HHHTTSSSSCEEEEEES-
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEecc-------------------ccchhh--HHHhhhhhhcCCCeEEc-
Confidence            68999996 9999999999999998 899999821                   124433  34443333333222221 


Q ss_pred             cCCcchhhhccCCEEEecCC
Q 020259          119 IEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d  138 (328)
                       .....+.++++|+||.+..
T Consensus        59 -~~~~~~~~~~aDivVitag   77 (144)
T d1mlda1          59 -PEQLPDCLKGCDVVVIPAG   77 (144)
T ss_dssp             -GGGHHHHHTTCSEEEECCS
T ss_pred             -CCChHHHhCCCCEEEECCC
Confidence             1223566799999987644

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.0043  Score=53.04  Aligned_cols=84  Identities=17%  Similarity=0.232  Sum_probs=65.2

Q ss_pred             HHHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEE
Q 020259           34 RDDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNI  112 (328)
Q Consensus        34 q~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v  112 (328)
                      .++| +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+                   ..|.+.+++.+++.++..++
T Consensus         5 M~~l-k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~-------------------~~~l~~~~~~l~~~~~~~~~   63 (257)
T d1xg5a_           5 MERW-RDRLALVTGASGGIGAAVARALVQQGL-KVVGCART-------------------VGNIEELAAECKSAGYPGTL   63 (257)
T ss_dssp             CGGG-TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCSSEE
T ss_pred             CCCC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCceE
Confidence            3568 688888887 78999999999999998 78888732                   25788889999998887888


Q ss_pred             EEEecccCCcc---------hhhhccCCEEEecCC
Q 020259          113 VPHFCRIEDKD---------ISFYNDFNIIVLGLD  138 (328)
Q Consensus       113 ~~~~~~~~~~~---------~~~~~~~dvVi~~~d  138 (328)
                      ..+..++.+..         .+-+.+.|++|.+..
T Consensus        64 ~~~~~Dls~~~~v~~~v~~~~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          64 IPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAG   98 (257)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             EEEEccCCCHHHHHHHHHHHHHhcCCCCEEEeccc
Confidence            88888876532         223567899888643

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.70  E-value=0.0048  Score=48.21  Aligned_cols=74  Identities=12%  Similarity=0.104  Sum_probs=47.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      ||.|||+|-+|+.++++|...|. .++.+|.+.                   .+....  +-....    +       .+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~~-------------------~~~~~~--~~~~~~----~-------~~   48 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEGR-------------------SPSTIE--RARTVG----V-------TE   48 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCTTC-------------------CHHHHH--HHHHHT----C-------EE
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCch-------------------hHHHHH--hhhccc----c-------cc
Confidence            69999999999999999999997 566655221                   122111  111222    1       11


Q ss_pred             cchhhhccCCEEEecCCCHHHHHHHHH
Q 020259          122 KDISFYNDFNIIVLGLDSIEARSYINA  148 (328)
Q Consensus       122 ~~~~~~~~~dvVi~~~d~~~~~~~l~~  148 (328)
                      ...+..+++|+||.|+.+......+..
T Consensus        49 ~~~e~~~~~diIi~~v~~~~~~~~~~~   75 (152)
T d1i36a2          49 TSEEDVYSCPVVISAVTPGVALGAARR   75 (152)
T ss_dssp             CCHHHHHTSSEEEECSCGGGHHHHHHH
T ss_pred             cHHHHHhhcCeEEEEecCchHHHHHHh
Confidence            245677889999999876555444433

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.69  E-value=0.002  Score=48.47  Aligned_cols=55  Identities=16%  Similarity=0.274  Sum_probs=39.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER  106 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l  106 (328)
                      ..+|+|||.|.+|.|+|..|...|. ++||++...    .+.++       ..+.=++.+.+.+++.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~----~il~~-------~d~~~~~~~~~~l~~~   76 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN----RILRK-------FDESVINVLENDMKKN   76 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS----SSCTT-------SCHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCchHHHHHHHHHHhccc-cceeeehhc----ccccc-------ccHHHHHHHHHHHHhC
Confidence            4689999999999999999999997 899998432    11222       1233466677777764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.68  E-value=0.0022  Score=52.39  Aligned_cols=82  Identities=17%  Similarity=0.143  Sum_probs=56.5

Q ss_pred             HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEE
Q 020259           35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIV  113 (328)
Q Consensus        35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~  113 (328)
                      ..| ++++|+|.| .||+|.++++.|+..|. +++++|.+.                   .|.+.+++.+.+.. .+.+.
T Consensus        19 ~~l-~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~-~~~~~   76 (191)
T d1luaa1          19 GSV-KGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKL-------------------DKAQAAADSVNKRF-KVNVT   76 (191)
T ss_dssp             SCC-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHHH-TCCCE
T ss_pred             CCC-CCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccch-------------------HHHHHHHHHHHhcc-chhhh
Confidence            347 699999999 79999999999999997 799987332                   45666677766542 33332


Q ss_pred             EEecccCCcchhhhccCCEEEecCC
Q 020259          114 PHFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       114 ~~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      ...-.-.+...+.+.+.|+||++..
T Consensus        77 ~~d~~~~~~~~~~~~~iDilin~Ag  101 (191)
T d1luaa1          77 AAETADDASRAEAVKGAHFVFTAGA  101 (191)
T ss_dssp             EEECCSHHHHHHHTTTCSEEEECCC
T ss_pred             hhhcccHHHHHHHhcCcCeeeecCc
Confidence            2211111223567889999998854

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.66  E-value=0.0058  Score=47.35  Aligned_cols=71  Identities=25%  Similarity=0.416  Sum_probs=48.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh---hCCCcEEEEEec
Q 020259           42 RILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME---RVSGVNIVPHFC  117 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~---lnp~v~v~~~~~  117 (328)
                      ||.|||+|.+|+.++-.|+..|. .+|.|+|-+                   +.|++..+.-+..   ..+.+++..   
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~-------------------~~~~~g~~~Dl~~~~~~~~~~~~~~---   59 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD-------------------KKRAEGDALDLIHGTPFTRRANIYA---   59 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHHHGGGSCCCEEEE---
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc-------------------cccccchhccccccccccccccccC---
Confidence            79999999999999999999998 579998832                   2344444444444   333333321   


Q ss_pred             ccCCcchhhhccCCEEEecCC
Q 020259          118 RIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d  138 (328)
                          .+.+-++++|+||.+..
T Consensus        60 ----~~~~~~~~adivvitag   76 (140)
T d1a5za1          60 ----GDYADLKGSDVVIVAAG   76 (140)
T ss_dssp             ----CCGGGGTTCSEEEECCC
T ss_pred             ----CcHHHhcCCCEEEEecc
Confidence                23445789999988754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.45  E-value=0.007  Score=47.12  Aligned_cols=33  Identities=30%  Similarity=0.608  Sum_probs=29.9

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.||| +|.+|..+|++|...|. .++++|.+.
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEeccccc
Confidence            6899999 99999999999999999 799988543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.43  E-value=0.0026  Score=51.14  Aligned_cols=33  Identities=30%  Similarity=0.493  Sum_probs=29.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      -+|.|||+|-.|+.+|++|+..|. ++.++|.+.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGF-KVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCC-eEEEEECCH
Confidence            369999999999999999999998 688888544

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.42  E-value=0.004  Score=48.57  Aligned_cols=73  Identities=22%  Similarity=0.352  Sum_probs=49.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh---hCCCcEEEEEe
Q 020259           41 ARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME---RVSGVNIVPHF  116 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~---lnp~v~v~~~~  116 (328)
                      +||.|||+|.+|+.+|-.|++.|. .+|.|+|-+                   +.|+++-+.-|+.   ..+..++... 
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~-------------------~~~~~g~a~Dl~~a~~~~~~~~i~~~-   61 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA-------------------KERVEAEVLDMQHGSSFYPTVSIDGS-   61 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS-------------------HHHHHHHHHHHHHTGGGSTTCEEEEE-
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec-------------------cccchhHHHHHHhccccCCCceeecC-
Confidence            589999999999999999999999 479998822                   2455544444444   3333333221 


Q ss_pred             cccCCcchhhhccCCEEEecCC
Q 020259          117 CRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                           .+.+-++++|+||.+..
T Consensus        62 -----~~~~~~~daDvVVitaG   78 (143)
T d1llda1          62 -----DDPEICRDADMVVITAG   78 (143)
T ss_dssp             -----SCGGGGTTCSEEEECCC
T ss_pred             -----CCHHHhhCCcEEEEecc
Confidence                 12345788999987754

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.40  E-value=0.0024  Score=51.44  Aligned_cols=37  Identities=16%  Similarity=0.278  Sum_probs=32.7

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++...+|+|+|+|++|.-.+..+...|..++..+|.+
T Consensus        25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CCCCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            3357889999999999999999999999999999854

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.39  E-value=0.0064  Score=47.13  Aligned_cols=72  Identities=19%  Similarity=0.283  Sum_probs=48.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh----hCCCcEEEEEe
Q 020259           42 RILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME----RVSGVNIVPHF  116 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~----lnp~v~v~~~~  116 (328)
                      ||.|||+|.+|+.++-.|+..|. .+|.|+|-+.                   .|+++.+..+..    .+...++... 
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~-------------------~~~~~~~~d~~~~~~~~~~~~~i~~~-   61 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE-------------------GIPQGKALDMYESGPVGLFDTKVTGS-   61 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCEEEEE-
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc-------------------ccchhhhhhhhcccchhcccceEEec-
Confidence            69999999999999999999996 6899998322                   233333333322    2334455432 


Q ss_pred             cccCCcchhhhccCCEEEecCC
Q 020259          117 CRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                           .+.+-++++|+||.+..
T Consensus        62 -----~~~~~~~dadvvvitag   78 (142)
T d1guza1          62 -----NDYADTANSDIVIITAG   78 (142)
T ss_dssp             -----SCGGGGTTCSEEEECCS
T ss_pred             -----CCHHHhcCCeEEEEEEe
Confidence                 23455789999987744

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.37  E-value=0.0055  Score=47.92  Aligned_cols=30  Identities=13%  Similarity=0.326  Sum_probs=27.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      +|.+||+|-+|..++++|..+|-.++.++|
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~   31 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIAN   31 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEEC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEe
Confidence            699999999999999999999976887776

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0043  Score=50.27  Aligned_cols=94  Identities=15%  Similarity=0.139  Sum_probs=57.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +.++|+|||.|..|-+.|..|++.|. +++|+|.+..--..+...........-+.-.+...+.+++.  .+++... ..
T Consensus        42 ~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~--gV~i~l~-~~  117 (179)
T d1ps9a3          42 QKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVT--GVTLKLN-HT  117 (179)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHH--TCEEEES-CC
T ss_pred             CCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcC--CeEEEeC-CE
Confidence            57899999999999999999999997 89999976533222221100111111112234455555555  3554432 22


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      ++   .+...+||.||.++..
T Consensus       118 Vt---~~~~~~~d~vilAtG~  135 (179)
T d1ps9a3         118 VT---ADQLQAFDETILASGI  135 (179)
T ss_dssp             CC---SSSSCCSSEEEECCCE
T ss_pred             Ec---ccccccceeEEEeecC
Confidence            22   3345789999888764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0083  Score=47.63  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=31.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...+|+|+|+|++|.-++..+...|..+++++|.+
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~   60 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS   60 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence            46789999999999999999999999999999844

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.32  E-value=0.0074  Score=51.55  Aligned_cols=80  Identities=18%  Similarity=0.316  Sum_probs=59.6

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      || +++.++|.| .+|+|.++++.|+..|. ++.+.|.+                   ..+.+.+.+.+.+..+..++..
T Consensus         1 rl-~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~l~~~~~~~~~~~~~~~~~~   59 (258)
T d1iy8a_           1 RF-TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVS-------------------SEGLEASKAAVLETAPDAEVLT   59 (258)
T ss_dssp             CC-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTCCEEE
T ss_pred             CC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhhCCCCeEEE
Confidence            46 577788877 67999999999999998 79998732                   2466777778877778878877


Q ss_pred             EecccCCcc---------hhhhccCCEEEec
Q 020259          115 HFCRIEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       115 ~~~~~~~~~---------~~~~~~~dvVi~~  136 (328)
                      ...++.+..         .+.+.+.|++|.+
T Consensus        60 ~~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnn   90 (258)
T d1iy8a_          60 TVADVSDEAQVEAYVTATTERFGRIDGFFNN   90 (258)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred             EeccCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence            777776532         2335678888775

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.31  E-value=0.018  Score=44.57  Aligned_cols=73  Identities=18%  Similarity=0.216  Sum_probs=49.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh----hCCCcEEEEEe
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME----RVSGVNIVPHF  116 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~----lnp~v~v~~~~  116 (328)
                      .||.|||+|.+|+.+|-.|+..|+..+.++|.+.                   .|+++.+.-+..    .....++... 
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~-------------------~~~~~~~~Dl~~~~~~~~~~~~i~~~-   61 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE-------------------GVPQGKALDLYEASPIEGFDVRVTGT-   61 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS-------------------SHHHHHHHHHHTTHHHHTCCCCEEEE-
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc-------------------ccchhHHHHhhccccccCCCCEEEec-
Confidence            5899999999999999999999999999987322                   344444444432    1223334332 


Q ss_pred             cccCCcchhhhccCCEEEecCC
Q 020259          117 CRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                           .+.+-+++.|+||.+..
T Consensus        62 -----~d~~~~~~advvvitag   78 (142)
T d1uxja1          62 -----NNYADTANSDVIVVTSG   78 (142)
T ss_dssp             -----SCGGGGTTCSEEEECCS
T ss_pred             -----CcHHHhcCCCEEEEeee
Confidence                 23345688999988765

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.26  E-value=0.017  Score=44.70  Aligned_cols=72  Identities=22%  Similarity=0.191  Sum_probs=49.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh----hCCCcEEEEEe
Q 020259           42 RILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME----RVSGVNIVPHF  116 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~----lnp~v~v~~~~  116 (328)
                      ||.|||+|.+|+.+|-.|+..|. .+|.|+|-                   .+.|+++-+.-|+.    .....++... 
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~~~g~alDl~~~~~~~~~~~~i~~~-   61 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI-------------------AEDLAVGEAMDLAHAAAGIDKYPKIVGG-   61 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECS-------------------SHHHHHHHHHHHHHHHHTTTCCCEEEEE-
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEec-------------------ccchhhHHHHHHhhhccccCCCCccccC-
Confidence            79999999999999999999887 68999972                   23455554444443    2222333321 


Q ss_pred             cccCCcchhhhccCCEEEecCC
Q 020259          117 CRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                           .+.+-++++|+||.+..
T Consensus        62 -----~d~~~~~~adiVvitag   78 (142)
T d1ojua1          62 -----ADYSLLKGSEIIVVTAG   78 (142)
T ss_dssp             -----SCGGGGTTCSEEEECCC
T ss_pred             -----CCHHHhccccEEEEecc
Confidence                 13456789999987754

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.25  E-value=0.0019  Score=52.19  Aligned_cols=75  Identities=20%  Similarity=0.198  Sum_probs=51.6

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcE---EE
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVN---IV  113 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~---v~  113 (328)
                      + ++++|+|+|+||.+..++..|  .+.++|+|+..          .         ..|++.+++.+.+..+.-.   +.
T Consensus        16 ~-~~k~vlIlGaGG~arai~~aL--~~~~~i~I~nR----------~---------~~ka~~l~~~~~~~~~~~~~~~~~   73 (177)
T d1nvta1          16 V-KDKNIVIYGAGGAARAVAFEL--AKDNNIIIANR----------T---------VEKAEALAKEIAEKLNKKFGEEVK   73 (177)
T ss_dssp             C-CSCEEEEECCSHHHHHHHHHH--TSSSEEEEECS----------S---------HHHHHHHHHHHHHHHTCCHHHHEE
T ss_pred             c-CCCEEEEECCcHHHHHHHHHH--ccccceeeehh----------h---------hhHHHHHHHHHHHhhchhhhhhhh
Confidence            6 699999999999999998776  56779998742          1         2688888888876533221   11


Q ss_pred             EEecccCCcchhhhccCCEEEecCCC
Q 020259          114 PHFCRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       114 ~~~~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      ..  .    .......+|+||+|+..
T Consensus        74 ~~--~----~~~~~~~~dliIn~tp~   93 (177)
T d1nvta1          74 FS--G----LDVDLDGVDIIINATPI   93 (177)
T ss_dssp             EE--C----TTCCCTTCCEEEECSCT
T ss_pred             hh--h----hhhccchhhhhccCCcc
Confidence            11  1    12234678999999763

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.12  E-value=0.0016  Score=52.41  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=31.3

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...+|+|+|+|++|.-++..+...|...+.+.|.+
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            46789999999999999999999999999998743

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.11  E-value=0.0028  Score=50.96  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=32.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+||+|||+|..|.++|..|++.|...++|+|...
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            68999999999999999999999998899998543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.09  E-value=0.0067  Score=48.90  Aligned_cols=87  Identities=11%  Similarity=0.173  Sum_probs=53.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh--hCCCcEEEEEec--
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME--RVSGVNIVPHFC--  117 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~--lnp~v~v~~~~~--  117 (328)
                      +|.|+|+|..|+.+|..|+..|. +++|+..+.                     -+...+.+++  .||.........  
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~---------------------~~~~~~~i~~~~~~~~~~~~~~~~~i   59 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEF---------------------DTEILKSISAGREHPRLGVKLNGVEI   59 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGG---------------------GHHHHHHHHTTCCBTTTTBCCCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEEecc---------------------cHHHHHHHhhhhhhhhhcchhccccc
Confidence            69999999999999999999996 788873210                     0111122221  122221111111  


Q ss_pred             ccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          118 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .......+.++++|+||.|+.+...+..+.++.
T Consensus        60 ~~~~~~~~~~~~ad~Ii~avps~~~~~~~~~l~   92 (180)
T d1txga2          60 FWPEQLEKCLENAEVVLLGVSTDGVLPVMSRIL   92 (180)
T ss_dssp             ECGGGHHHHHTTCSEEEECSCGGGHHHHHHHHT
T ss_pred             cccccHHHHHhccchhhcccchhhhHHHHHhhc
Confidence            112234567889999999998877776666544

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.09  E-value=0.0035  Score=50.51  Aligned_cols=35  Identities=26%  Similarity=0.188  Sum_probs=31.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...+|+|+|+|++|.-++..+...|.++++++|.+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~   62 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS   62 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccc
Confidence            46889999999999999999999999999999853

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.02  E-value=0.008  Score=46.68  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFK-NLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d   73 (328)
                      .||.|||+|.+|+.++-.|+..|.. +|.|+|-+
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~   35 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   35 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEecc
Confidence            5899999999999999999999984 69999833

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.0032  Score=45.10  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++++|+|+|+|..|-.+|+.|...|. +++++|..
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~   37 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTR   37 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCC
Confidence            58899999999999999999999997 78998853

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.95  E-value=0.0048  Score=46.45  Aligned_cols=55  Identities=18%  Similarity=0.407  Sum_probs=40.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER  106 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l  106 (328)
                      ...+|+|||.|.+|.|+|..|...|. ++|+++....         +..   .+..=++.+.+.+++.
T Consensus        31 ~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~~---------l~~---~d~~~~~~~~~~l~~~   85 (122)
T d1xhca2          31 NSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGAM---------FLG---LDEELSNMIKDMLEET   85 (122)
T ss_dssp             HHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSSC---------CTT---CCHHHHHHHHHHHHHT
T ss_pred             cCCcEEEECCcHHHHHHHHHhhcccc-eEEEEecccc---------ccC---CCHHHHHHHHHHHHHC
Confidence            35789999999999999999999997 8999975421         111   2333455667777775

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.93  E-value=0.0043  Score=49.88  Aligned_cols=36  Identities=19%  Similarity=0.313  Sum_probs=32.3

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ...+|+|+|+|++|.-.+..+-.+|.+.+.+.|.+.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            468899999999999999999999999999988543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.038  Score=42.72  Aligned_cols=87  Identities=14%  Similarity=0.084  Sum_probs=55.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      +-||+|+|+|.+|..+++.|...|. +++++|.|.                   .+.....+.+.  .+++.+  ...+.
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~-------------------~~~~~~~~~~~--~~~~~v--i~Gd~   58 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLP-------------------EDDIKQLEQRL--GDNADV--IPGDS   58 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCC-------------------HHHHHHHHHHH--CTTCEE--EESCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccc-------------------hhHHHHHHHhh--cCCcEE--EEccC
Confidence            5689999999999999999999997 688888543                   12222222222  234443  33333


Q ss_pred             CCc---chhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          120 EDK---DISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       120 ~~~---~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                      .+.   ...-++++|.||.++++...-..+-..+
T Consensus        59 ~d~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~   92 (153)
T d1id1a_          59 NDSSVLKKAGIDRCRAILALSDNDADNAFVVLSA   92 (153)
T ss_dssp             TSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHH
T ss_pred             cchHHHHHhccccCCEEEEccccHHHHHHHHHHH
Confidence            321   2333568999999988766555444444

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.85  E-value=0.014  Score=49.81  Aligned_cols=79  Identities=20%  Similarity=0.355  Sum_probs=55.3

Q ss_pred             HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEE
Q 020259           35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIV  113 (328)
Q Consensus        35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~  113 (328)
                      ||| +++.++|.| .+|+|.++|+.|+..|. ++.++|.+                   +.+.+.+.+.+++..  .++.
T Consensus         1 krL-~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~~~~~g--~~~~   57 (260)
T d1zema1           1 KKF-NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMN-------------------REALEKAEASVREKG--VEAR   57 (260)
T ss_dssp             CTT-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTT--SCEE
T ss_pred             CCC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcC--CcEE
Confidence            478 688888888 68899999999999998 79998743                   245666677776654  3455


Q ss_pred             EEecccCCcc---------hhhhccCCEEEec
Q 020259          114 PHFCRIEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       114 ~~~~~~~~~~---------~~~~~~~dvVi~~  136 (328)
                      .+..++.+..         .+.+...|++|.+
T Consensus        58 ~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVnn   89 (260)
T d1zema1          58 SYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNN   89 (260)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EEEccCCCHHHHHHHHHHHHHHhCCCCeehhh
Confidence            6666665421         2234567877765

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.82  E-value=0.016  Score=45.21  Aligned_cols=68  Identities=13%  Similarity=0.320  Sum_probs=46.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIED  121 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~  121 (328)
                      ||.+||+|-+|+.+++.|..+|. ++++.|.+.                   .|++.+++.+.     +.       ...
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~-------------------~~~~~l~~~~g-----~~-------~~~   49 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSL-------------------ERSKEIAEQLA-----LP-------YAM   49 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSH-------------------HHHHHHHHHHT-----CC-------BCS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChH-------------------HhHHhhccccc-----ee-------eec
Confidence            69999999999999999998874 677765322                   34444443321     11       123


Q ss_pred             cchhhhccCCEEEecCCCHH
Q 020259          122 KDISFYNDFNIIVLGLDSIE  141 (328)
Q Consensus       122 ~~~~~~~~~dvVi~~~d~~~  141 (328)
                      ...+..+++|+|+.|+.+..
T Consensus        50 ~~~~~~~~~dvIilavkp~~   69 (152)
T d2ahra2          50 SHQDLIDQVDLVILGIKPQL   69 (152)
T ss_dssp             SHHHHHHTCSEEEECSCGGG
T ss_pred             hhhhhhhccceeeeecchHh
Confidence            45677889999999986543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.78  E-value=0.0051  Score=47.12  Aligned_cols=57  Identities=19%  Similarity=0.286  Sum_probs=41.0

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER  106 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l  106 (328)
                      ...+|+|||.|-+|.|+|..|...|. ++|+++....-   +.+       ..++.-++.+.+.+++.
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~~~---l~~-------~~~~~~~~~~~~~~~~~   90 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAARV---LER-------VTAPPVSAFYEHLHREA   90 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSST---TTT-------TSCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecccc---ccc-------ccchhhhhhhhhccccc
Confidence            36789999999999999999999998 79999854421   111       12233355666666765

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.72  E-value=0.0081  Score=48.61  Aligned_cols=36  Identities=22%  Similarity=0.312  Sum_probs=32.8

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      | .+++|.|||+|.+|.++++.|...|+ ++..+|...
T Consensus        40 l-~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~   75 (181)
T d1qp8a1          40 I-QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTP   75 (181)
T ss_dssp             C-TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             c-cCceEEEeccccccccceeeeecccc-ccccccccc
Confidence            7 69999999999999999999999999 899988653

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.68  E-value=0.007  Score=45.64  Aligned_cols=56  Identities=23%  Similarity=0.316  Sum_probs=40.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER  106 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l  106 (328)
                      ..+|+|||.|.+|.|+|..|+..|. ++|+++...        +.+  ....++.-++.+.+.+++.
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~--------~~l--~~~~d~~~~~~~~~~l~~~   85 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD--------RPL--GVYLDKEFTDVLTEEMEAN   85 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS--------STT--TTTCCHHHHHHHHHHHHTT
T ss_pred             CCEEEEECChHHHHHHHHHhhccce-EEEEEEecC--------ccc--ccccchhhHHHHHHHhhcC
Confidence            4589999999999999999999998 799997542        111  1123444566666777664

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.67  E-value=0.033  Score=43.75  Aligned_cols=34  Identities=21%  Similarity=0.186  Sum_probs=30.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...+|+|+|+|++|.-++..+...|. ++.++|.+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~   59 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARS   59 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcc-cccccchH
Confidence            47889999999999999999999997 78888843

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.0062  Score=45.89  Aligned_cols=32  Identities=22%  Similarity=0.408  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      -.+++|||.|.+|+|+|..|...|. ++||++.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~   54 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEF   54 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCc-ceeEEEe
Confidence            4689999999999999999999998 8999974

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.63  E-value=0.042  Score=42.39  Aligned_cols=74  Identities=16%  Similarity=0.198  Sum_probs=49.7

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCC-eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh---hCCCcEEEEE
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFK-NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME---RVSGVNIVPH  115 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg-~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~---lnp~v~v~~~  115 (328)
                      +||.||| +|.+|+.+|-.|+..|.. ++.|+|-+.                 .+.+++..+.-|+.   .++..++.. 
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~-----------------~~~~~~g~a~Dl~~~~~~~~~~~i~~-   62 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPD-----------------KEDDTVGQAADTNHGIAYDSNTRVRQ-   62 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGG-----------------GHHHHHHHHHHHHHHHTTTCCCEEEE-
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCC-----------------cccccceeecchhhcccccCCceEee-
Confidence            5899999 699999999999999985 688887311                 12345544445554   344444432 


Q ss_pred             ecccCCcchhhhccCCEEEecCC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                       .     +.+-++++|+||.+..
T Consensus        63 -~-----~~~~~~~aDiVvitaG   79 (142)
T d1o6za1          63 -G-----GYEDTAGSDVVVITAG   79 (142)
T ss_dssp             -C-----CGGGGTTCSEEEECCC
T ss_pred             -C-----CHHHhhhcCEEEEecc
Confidence             1     2344689999987644

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.62  E-value=0.0069  Score=45.08  Aligned_cols=31  Identities=26%  Similarity=0.432  Sum_probs=28.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .+|+|||.|.+|+|+|..|...|. ++||++.
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~   53 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGT-KVTILEG   53 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CeEEEECCCccceeeeeeeccccc-EEEEEEe
Confidence            689999999999999999999997 7999973

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.55  E-value=0.015  Score=49.85  Aligned_cols=80  Identities=11%  Similarity=0.278  Sum_probs=55.4

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC-CCcEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-SGVNIV  113 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln-p~v~v~  113 (328)
                      || +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+                   +.|.+.+++.+.+.. +..++.
T Consensus         1 rL-~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~i~~~~~~~~~~~   59 (274)
T d1xhla_           1 RF-SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRN-------------------EDRLEETKQQILKAGVPAEKIN   59 (274)
T ss_dssp             CC-TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCCGGGEE
T ss_pred             CC-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHcCCCCcceE
Confidence            46 577777777 78999999999999998 78888732                   245666777776654 334666


Q ss_pred             EEecccCCcc---------hhhhccCCEEEec
Q 020259          114 PHFCRIEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       114 ~~~~~~~~~~---------~~~~~~~dvVi~~  136 (328)
                      .+..++.+..         .+.+.+.|++|.+
T Consensus        60 ~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnn   91 (274)
T d1xhla_          60 AVVADVTEASGQDDIINTTLAKFGKIDILVNN   91 (274)
T ss_dssp             EEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EEEeeCCCHHHHHHHHHHHHHHcCCceEEEee
Confidence            7766665521         2234567888765

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.51  E-value=0.0083  Score=48.86  Aligned_cols=82  Identities=23%  Similarity=0.303  Sum_probs=53.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHh--hC----CCcEEEE
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVME--RV----SGVNIVP  114 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~--ln----p~v~v~~  114 (328)
                      .||+|+|+|..|+.+|..|+..|. +++|++.+.=.                   +    +.+++  .|    |+++.  
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~-------------------~----~~i~~~~~n~~yl~~~~l--   61 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEE-------------------V----RLVNEKRENVLFLKGVQL--   61 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHH-------------------H----HHHHHHTBCTTTSTTCBC--
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHH-------------------H----HHHhhccccccccccccc--
Confidence            579999999999999999999986 79998754311                   1    11211  11    22221  


Q ss_pred             Eeccc--CCcchhhhccCCEEEecCCCHHHHHHHHHH
Q 020259          115 HFCRI--EDKDISFYNDFNIIVLGLDSIEARSYINAV  149 (328)
Q Consensus       115 ~~~~~--~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~  149 (328)
                       ++.+  .....+.++++|+||.|+.+...+..+.++
T Consensus        62 -~~~i~~t~~l~~a~~~ad~iiiavPs~~~~~~~~~~   97 (189)
T d1n1ea2          62 -ASNITFTSDVEKAYNGAEIILFVIPTQFLRGFFEKS   97 (189)
T ss_dssp             -CTTEEEESCHHHHHTTCSCEEECSCHHHHHHHHHHH
T ss_pred             -ccccccchhhhhccCCCCEEEEcCcHHHHHHHHHHH
Confidence             1111  122356688999999999887666655543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.48  E-value=0.0087  Score=45.07  Aligned_cols=53  Identities=28%  Similarity=0.285  Sum_probs=39.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER  106 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l  106 (328)
                      .+++|||.|.+|.|+|..|...|. ++||+..+.     +-+.|       .+.=++.+.+.+++.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~~-----~l~~~-------D~~~~~~l~~~l~~~   73 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRSI-----LLRGF-------DQDMANKIGEHMEEH   73 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS-----SSTTS-------CHHHHHHHHHHHHHT
T ss_pred             CeEEEECCCccHHHHHHHHhhcCC-eEEEEEech-----hhccC-------CHHHHHHHHHHHHHC
Confidence            579999999999999999999998 899997553     22321       123356677777774

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.44  E-value=0.063  Score=42.66  Aligned_cols=35  Identities=23%  Similarity=0.400  Sum_probs=32.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ....|+|+|+||+|.-.+..+...|..+|..+|.+
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~   63 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLN   63 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCc
Confidence            57789999999999999999999999999999843

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.42  E-value=0.02  Score=49.02  Aligned_cols=80  Identities=13%  Similarity=0.279  Sum_probs=54.5

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC-CCcEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-SGVNIV  113 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln-p~v~v~  113 (328)
                      || +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+.                   .+.+.+++.+++.. +..++.
T Consensus         2 rL-~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~-------------------~~l~~~~~~l~~~~~~~~~~~   60 (272)
T d1xkqa_           2 RF-SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSS-------------------ERLEETRQIILKSGVSEKQVN   60 (272)
T ss_dssp             TT-TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHTTTCCGGGEE
T ss_pred             CC-CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHhcCCCCCceE
Confidence            46 577777777 78999999999999998 799987432                   35566666666543 344566


Q ss_pred             EEecccCCcc---------hhhhccCCEEEec
Q 020259          114 PHFCRIEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       114 ~~~~~~~~~~---------~~~~~~~dvVi~~  136 (328)
                      ....++.+..         .+.+.+.|++|.+
T Consensus        61 ~~~~Dvs~~~~v~~~~~~~~~~~g~iDilvnn   92 (272)
T d1xkqa_          61 SVVADVTTEDGQDQIINSTLKQFGKIDVLVNN   92 (272)
T ss_dssp             EEECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EEEccCCCHHHHHHHHHHHHHHhCCceEEEeC
Confidence            6666665421         2234567877765

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.38  E-value=0.019  Score=45.59  Aligned_cols=38  Identities=18%  Similarity=0.394  Sum_probs=32.8

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ++...+|+|+|+||+|.-.+..+...|..++..+|.+.
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~   63 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK   63 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH
Confidence            43567899999999999999999999999999987443

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.36  E-value=0.029  Score=47.68  Aligned_cols=81  Identities=12%  Similarity=0.233  Sum_probs=57.1

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC-CCcEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-SGVNIV  113 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln-p~v~v~  113 (328)
                      || +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+                   ..+.+.+++.+++.. +..++.
T Consensus         2 rl-~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~l~~~~~~~~~~~   60 (264)
T d1spxa_           2 RF-AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRH-------------------AERLEETRQQILAAGVSEQNVN   60 (264)
T ss_dssp             TT-TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCCGGGEE
T ss_pred             CC-CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCcCceE
Confidence            56 566666666 78999999999999998 78888733                   246667777777764 344577


Q ss_pred             EEecccCCcc---------hhhhccCCEEEecC
Q 020259          114 PHFCRIEDKD---------ISFYNDFNIIVLGL  137 (328)
Q Consensus       114 ~~~~~~~~~~---------~~~~~~~dvVi~~~  137 (328)
                      .+..++.+..         .+.+.+.|++|.+.
T Consensus        61 ~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnA   93 (264)
T d1spxa_          61 SVVADVTTDAGQDEILSTTLGKFGKLDILVNNA   93 (264)
T ss_dssp             EEECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEccCCCHHHHHHHHHHHHHHhCCCCEeeccc
Confidence            7777775532         22346789888764

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.35  E-value=0.0089  Score=44.35  Aligned_cols=55  Identities=18%  Similarity=0.216  Sum_probs=39.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER  106 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l  106 (328)
                      -.+++|||.|.+|+|+|..|...|. ++|+++...    .+.++       ....-++.+.+.+++.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~----~il~~-------~d~~~~~~l~~~l~~~   75 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE----RILPT-------YDSELTAPVAESLKKL   75 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS----SSSTT-------SCHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec----ccccc-------ccchhHHHHHHHHHhh
Confidence            3689999999999999999999998 799997532    12222       1123355666777775

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.0093  Score=44.39  Aligned_cols=54  Identities=26%  Similarity=0.256  Sum_probs=39.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER  106 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l  106 (328)
                      .+|+|||.|.+|+|+|..|...|. ++|+++...-    +.+++     |  +.-++.+.+.+++.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~----~l~~~-----d--~~~~~~~~~~l~~~   75 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFDA----PLPSF-----D--PMISETLVEVMNAE   75 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS----SSTTS-----C--HHHHHHHHHHHHHH
T ss_pred             CEEEEECCChhhHHHHHHhhcccc-EEEEEeecch----hhhhc-----c--hhhHHHHHHHHHHC
Confidence            689999999999999999999998 8999985432    11221     1  23356666777765

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.21  E-value=0.0098  Score=51.22  Aligned_cols=36  Identities=33%  Similarity=0.702  Sum_probs=32.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      .+|+|||+|.+|+.+|..|++.|..+++|+|.+.+.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~~   37 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   37 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            479999999999999999999999889999987653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.042  Score=47.66  Aligned_cols=80  Identities=21%  Similarity=0.396  Sum_probs=56.0

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCC---CcE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVS---GVN  111 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp---~v~  111 (328)
                      +| +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+                   ..|.+.+++.|++..+   ..+
T Consensus         9 ~L-~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~-------------------~~~l~~~~~el~~~~~~~~~~~   67 (297)
T d1yxma1           9 LL-QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRK-------------------LERLKSAADELQANLPPTKQAR   67 (297)
T ss_dssp             TT-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTSCTTCCCC
T ss_pred             CC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhhhccccCce
Confidence            47 688888887 78999999999999998 78888732                   3456666777665432   446


Q ss_pred             EEEEecccCCcc---------hhhhccCCEEEec
Q 020259          112 IVPHFCRIEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       112 v~~~~~~~~~~~---------~~~~~~~dvVi~~  136 (328)
                      +..+..++.+..         .+.+.+.|++|.+
T Consensus        68 ~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnn  101 (297)
T d1yxma1          68 VIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNN  101 (297)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EEEEeccCCCHHHHHHHHHHHHHHhCCeEEEEee
Confidence            667766665422         2334567888775

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.19  E-value=0.084  Score=41.78  Aligned_cols=37  Identities=16%  Similarity=0.257  Sum_probs=32.9

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++...+|+|+|+|++|.-.+..+..+|..++..+|.+
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~   61 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH   61 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCCh
Confidence            3357789999999999999999999999999999854

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.011  Score=44.57  Aligned_cols=54  Identities=17%  Similarity=0.220  Sum_probs=39.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER  106 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l  106 (328)
                      .+|+|||.|.+|+|+|..|...|. ++|+++...        ++ ++.  ..+.-++.+.+.+++.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~--------~~-l~~--~d~~~~~~~~~~l~~~   76 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD--------KV-LRS--FDSMISTNCTEELENA   76 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS--------SS-CTT--SCHHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc--------cc-ccc--hhhHHHHHHHHHHHHC
Confidence            689999999999999999999998 799987532        11 111  1233466667777664

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.11  E-value=0.018  Score=44.97  Aligned_cols=28  Identities=21%  Similarity=0.291  Sum_probs=23.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ||.+||+|..|+.+|+||+..|.  ..+++
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~--~~~~~   29 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFP--TLVWN   29 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSC--EEEEC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCC--EEEEe
Confidence            69999999999999999998774  44443

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.98  E-value=0.049  Score=46.75  Aligned_cols=81  Identities=16%  Similarity=0.245  Sum_probs=54.3

Q ss_pred             HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEE
Q 020259           35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIV  113 (328)
Q Consensus        35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~  113 (328)
                      .+| +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+.                   .|.+.+++.+.+.++ .++.
T Consensus        21 ~~l-~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~-------------------~~l~~~~~~l~~~~g-~~~~   78 (294)
T d1w6ua_          21 NSF-QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKM-------------------DVLKATAEQISSQTG-NKVH   78 (294)
T ss_dssp             TTT-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHHS-SCEE
T ss_pred             CCC-CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCH-------------------HHHHHHHHHHHHhcC-CceE
Confidence            457 678888887 89999999999999996 899988432                   455556666655442 3444


Q ss_pred             EEecccCCcc---------hhhhccCCEEEecC
Q 020259          114 PHFCRIEDKD---------ISFYNDFNIIVLGL  137 (328)
Q Consensus       114 ~~~~~~~~~~---------~~~~~~~dvVi~~~  137 (328)
                      .+..++.+..         .+.+.+.|++|.+.
T Consensus        79 ~~~~D~~~~~~v~~~~~~~~~~~g~iDilvnnA  111 (294)
T d1w6ua_          79 AIQCDVRDPDMVQNTVSELIKVAGHPNIVINNA  111 (294)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHTCSCSEEEECC
T ss_pred             EEEecccChHHHHHHhhhhhhhccccchhhhhh
Confidence            5555554321         22345678887763

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.98  E-value=0.015  Score=43.41  Aligned_cols=32  Identities=31%  Similarity=0.398  Sum_probs=28.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      -.+++|||.|.+|+|+|..|+..|. ++|++..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~   53 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGA-EVTVLEA   53 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCC-ceEEEEe
Confidence            4789999999999999999999998 7888863

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.051  Score=45.83  Aligned_cols=78  Identities=19%  Similarity=0.336  Sum_probs=55.5

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      .+.++|.| .+|+|.++|+.|+..|. ++.+.|.+                   ..+.+.+.+.+.+..+..++..+..+
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~D   62 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWN-------------------LEAGVQCKAALHEQFEPQKTLFIQCD   62 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHTTTSCGGGEEEEECC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHhcCCCcEEEEEee
Confidence            44556666 68999999999999998 79998732                   23566667777776667777777777


Q ss_pred             cCCcc---------hhhhccCCEEEecC
Q 020259          119 IEDKD---------ISFYNDFNIIVLGL  137 (328)
Q Consensus       119 ~~~~~---------~~~~~~~dvVi~~~  137 (328)
                      +.+..         .+.+.+.|++|.+.
T Consensus        63 v~~~~~v~~~~~~~~~~~G~iDilVnnA   90 (254)
T d2gdza1          63 VADQQQLRDTFRKVVDHFGRLDILVNNA   90 (254)
T ss_dssp             TTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             cCCHHHHHHHHHHHHHHcCCcCeecccc
Confidence            76532         23345788888763

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.90  E-value=0.059  Score=45.42  Aligned_cols=78  Identities=23%  Similarity=0.381  Sum_probs=50.5

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+.                   .+.+.+++.+.+.+ ..++..+..
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~-------------------~~~~~~~~~l~~~~-g~~~~~~~~   62 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNL-------------------EEASEAAQKLTEKY-GVETMAFRC   62 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHH-CCCEEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHHHh-CCcEEEEEc
Confidence            577788887 67999999999999998 799987432                   33444444444332 234555556


Q ss_pred             ccCCcc---------hhhhccCCEEEecC
Q 020259          118 RIEDKD---------ISFYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~---------~~~~~~~dvVi~~~  137 (328)
                      ++.+..         .+.+.+.|++|.+.
T Consensus        63 Dv~~~~~v~~~~~~~~~~~g~iDiLVnnA   91 (251)
T d1vl8a_          63 DVSNYEEVKKLLEAVKEKFGKLDTVVNAA   91 (251)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            665421         22345678887753

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.88  E-value=0.019  Score=47.37  Aligned_cols=35  Identities=26%  Similarity=0.434  Sum_probs=32.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      .+||+|||+|-.|..+|..|+..|. +++|+|.+.+
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~~~   40 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLP   40 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            5689999999999999999999999 7999998765

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.88  E-value=0.046  Score=44.83  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=30.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~   74 (328)
                      .||+|||+|..|...|..|.++|.+ ++|++|...
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            4899999999999999999999876 799998653

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.83  E-value=0.015  Score=43.88  Aligned_cols=32  Identities=28%  Similarity=0.536  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      -.+++|||.|-+|+|+|..+...|. ++|+++.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~   57 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEM   57 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEe
Confidence            4689999999999999999999998 8999874

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.69  E-value=0.019  Score=44.77  Aligned_cols=35  Identities=23%  Similarity=0.359  Sum_probs=31.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~   74 (328)
                      ..||+|||.|.+|.|+|..|...|-. +||++|.+.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            57999999999999999999999863 899998664

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.68  E-value=0.028  Score=44.36  Aligned_cols=37  Identities=22%  Similarity=0.409  Sum_probs=32.1

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++...+|+|+|+||+|.-.+..+..+|...+..+|.+
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~   62 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN   62 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEccc
Confidence            3356789999999999999999999999999888743

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.087  Score=42.46  Aligned_cols=33  Identities=24%  Similarity=0.465  Sum_probs=28.7

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      -+||+|+| .|.+|+.+++.|...|. ++++++.+
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~   36 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRD   36 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcC
Confidence            57899999 58899999999999997 78888654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.67  E-value=0.019  Score=42.57  Aligned_cols=33  Identities=15%  Similarity=0.087  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .++|+|||.|.+|+|+|..|.+.|. ++++++..
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~   54 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRT   54 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcch-hheEeecc
Confidence            5799999999999999999999997 79998743

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.66  E-value=0.042  Score=46.47  Aligned_cols=76  Identities=20%  Similarity=0.318  Sum_probs=52.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+                   +.+.+.+++.+++..+  ++..+..
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~~~~~~~~l~~~g~--~~~~~~~   67 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDIN-------------------ADAANHVVDEIQQLGG--QAFACRC   67 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHcCC--cEEEEEc
Confidence            456666666 78999999999999998 78888732                   2466777777777654  4445555


Q ss_pred             ccCCcc---------hhhhccCCEEEec
Q 020259          118 RIEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       118 ~~~~~~---------~~~~~~~dvVi~~  136 (328)
                      ++.+..         .+.+.+.|++|.+
T Consensus        68 Dvs~~~~~~~~~~~~~~~~g~iDilvnn   95 (255)
T d1fmca_          68 DITSEQELSALADFAISKLGKVDILVNN   95 (255)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSSCCEEEEC
T ss_pred             cCCCHHHHHHHHHHHHHHcCCCCEeeeC
Confidence            665421         2334677888776

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.62  E-value=0.015  Score=47.33  Aligned_cols=32  Identities=34%  Similarity=0.584  Sum_probs=30.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +|+|||+|..|...|..|++.|+.+++|+|..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECC
Confidence            69999999999999999999999889999864

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=94.57  E-value=0.094  Score=44.17  Aligned_cols=79  Identities=19%  Similarity=0.294  Sum_probs=54.3

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +++.|+|.| .+|+|.++|+.|+..|..-+.+.+.+.                    +.+ ..+.+...++..++..+..
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~--------------------~~~-~~~~~~~~~~~~~~~~~~~   62 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE--------------------NPT-ALAELKAINPKVNITFHTY   62 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC--------------------CHH-HHHHHHHHCTTSEEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc--------------------cHH-HHHHHHhhCCCCCEEEEEe
Confidence            578888887 669999999999999996555544221                    111 2345667788888888887


Q ss_pred             ccCCcc----------hhhhccCCEEEecCC
Q 020259          118 RIEDKD----------ISFYNDFNIIVLGLD  138 (328)
Q Consensus       118 ~~~~~~----------~~~~~~~dvVi~~~d  138 (328)
                      ++....          .+.+.+.|++|.+..
T Consensus        63 d~~~~~~~~~~~~~~~~~~~g~iDilvnnAG   93 (254)
T d1sbya1          63 DVTVPVAESKKLLKKIFDQLKTVDILINGAG   93 (254)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEeCCC
Confidence            775211          223467898888743

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.092  Score=44.03  Aligned_cols=77  Identities=17%  Similarity=0.186  Sum_probs=52.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +...++|.| .+|+|.++|+.|+..|. ++.+.|.+                   +.|.+.+++.+++.++  ++.....
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~-------------------~~~l~~~~~~~~~~~~--~~~~~~~   63 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDIN-------------------KHGLEETAAKCKGLGA--KVHTFVV   63 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEEe
Confidence            355566667 67899999999999998 78888732                   2466777777777665  4445555


Q ss_pred             ccCCcc---------hhhhccCCEEEecC
Q 020259          118 RIEDKD---------ISFYNDFNIIVLGL  137 (328)
Q Consensus       118 ~~~~~~---------~~~~~~~dvVi~~~  137 (328)
                      ++.+..         .+.+...|++|.+.
T Consensus        64 Dvs~~~~v~~~~~~i~~~~g~idilinna   92 (244)
T d1yb1a_          64 DCSNREDIYSSAKKVKAEIGDVSILVNNA   92 (244)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCCSEEEECC
T ss_pred             eCCCHHHHHHHHHHHHHHcCCCceeEeec
Confidence            655421         22345678877763

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=94.48  E-value=0.052  Score=45.78  Aligned_cols=77  Identities=18%  Similarity=0.180  Sum_probs=49.8

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      || +++.++|.| .+|+|.++|+.|+..|. ++.++|.+.                   .+.+.+++.+..   .-++..
T Consensus         3 rL-~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~-------------------~~~~~~~~~~~~---~~~~~~   58 (251)
T d1zk4a1           3 RL-DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHS-------------------DVGEKAAKSVGT---PDQIQF   58 (251)
T ss_dssp             TT-TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHCC---TTTEEE
T ss_pred             CC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHhCC---CCcEEE
Confidence            67 577777777 88999999999999998 688887432                   244444444432   224555


Q ss_pred             EecccCCcc---------hhhhccCCEEEec
Q 020259          115 HFCRIEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       115 ~~~~~~~~~---------~~~~~~~dvVi~~  136 (328)
                      +..++.+..         .+.+.+.|++|.+
T Consensus        59 ~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnn   89 (251)
T d1zk4a1          59 FQHDSSDEDGWTKLFDATEKAFGPVSTLVNN   89 (251)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSSCCEEEEC
T ss_pred             EEccCCCHHHHHHHHHHHHHHhCCceEEEec
Confidence            555555421         2334567777765

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.46  E-value=0.12  Score=43.48  Aligned_cols=74  Identities=18%  Similarity=0.326  Sum_probs=51.8

Q ss_pred             CcEEEE-c-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           41 ARILVV-G-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        41 ~~Vlii-G-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      .||+|| | .+|+|.++|+.|+..|. ++.++|.+                   +.+.+.+++.+++.+.  ++..+..+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~l~~~~~~l~~~g~--~~~~~~~D   59 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARG-------------------EEGLRTTLKELREAGV--EADGRTCD   59 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEECC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEEee
Confidence            467555 5 78999999999999998 78888742                   2467777777877643  55666666


Q ss_pred             cCCcc---------hhhhccCCEEEec
Q 020259          119 IEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       119 ~~~~~---------~~~~~~~dvVi~~  136 (328)
                      +.+..         .+.+.+.|++|.+
T Consensus        60 vs~~~~v~~~~~~~~~~~g~iDilVnn   86 (257)
T d2rhca1          60 VRSVPEIEALVAAVVERYGPVDVLVNN   86 (257)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSCSEEEEC
T ss_pred             cCCHHHHHHHHHHHHHHhCCCCEEEec
Confidence            65421         2334577888875

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.43  E-value=0.018  Score=48.99  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +.+|+|||+|..|..+|..|.+.|+ +++|+|..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~   34 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQ   34 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            5789999999999999999999999 79999865

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.42  E-value=0.044  Score=43.12  Aligned_cols=74  Identities=18%  Similarity=0.195  Sum_probs=45.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHh-----CCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh-CCCcEEEEE
Q 020259           42 RILVVGAGGLGCELLKDLALS-----GFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER-VSGVNIVPH  115 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~-----Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l-np~v~v~~~  115 (328)
                      ||.|||+|++|...+-...+.     .+++|.|+|-|                   +.|++++.+..... ....++.. 
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did-------------------~~k~~~~~d~~~~~~~~~~~~~~-   61 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDID-------------------EEKQKIVVDFVKRLVKDRFKVLI-   61 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSC-------------------HHHHHHHHHHHHHHHTTSSEEEE-
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecC-------------------cHHHHHHHHHHHhhhccCceEEE-
Confidence            699999999887766443322     25789999832                   24555544444432 22233322 


Q ss_pred             ecccCCcchhhhccCCEEEecCCC
Q 020259          116 FCRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       116 ~~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                          .....+.++++|+||.+...
T Consensus        62 ----t~~~~~~l~~aDvVVita~~   81 (162)
T d1up7a1          62 ----SDTFEGAVVDAKYVIFQFRP   81 (162)
T ss_dssp             ----CSSHHHHHTTCSEEEECCCT
T ss_pred             ----ecCcccccCCCCEEEEeccc
Confidence                23356778999999888654

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.35  E-value=0.066  Score=45.43  Aligned_cols=37  Identities=24%  Similarity=0.406  Sum_probs=31.2

Q ss_pred             HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +|| +++.++|.| .+|+|.++|+.|+..|. ++.++|.+
T Consensus         2 nrL-~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~   39 (268)
T d2bgka1           2 NRL-QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIA   39 (268)
T ss_dssp             CTT-TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCC-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            368 688888887 78999999999999997 79998843

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.18  Score=38.74  Aligned_cols=74  Identities=19%  Similarity=0.283  Sum_probs=47.6

Q ss_pred             cEEEEc-CChHHHHHHHHHHHh-CC-CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           42 RILVVG-AGGLGCELLKDLALS-GF-KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~-Gv-g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ||.||| .|.+|+.+|-.|+.. |. .+|.|+|-+                    ++++..+--|+...........   
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~--------------------~~~~g~a~Dl~h~~~~~~~~~~---   58 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA--------------------PVTPGVAVDLSHIPTAVKIKGF---   58 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS--------------------TTHHHHHHHHHTSCSSCEEEEE---
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc--------------------ccchhHHHHHHCCccccCCcEE---
Confidence            799999 599999999888754 54 689998721                    1233334455555444444332   


Q ss_pred             cCCcchhhhccCCEEEecCC
Q 020259          119 IEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d  138 (328)
                      ....+.+-+++.|+||.+..
T Consensus        59 ~~~~~~~~~~~aDvvvitaG   78 (145)
T d2cmda1          59 SGEDATPALEGADVVLISAG   78 (145)
T ss_dssp             CSSCCHHHHTTCSEEEECCS
T ss_pred             EcCCCccccCCCCEEEECCC
Confidence            22334556789999987754

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.28  E-value=0.094  Score=41.55  Aligned_cols=75  Identities=20%  Similarity=0.241  Sum_probs=48.5

Q ss_pred             CCcEEEEcCChHHHH--HHHHHHHh-C--CCeEEEEeCCccCccCCccccCCCCCCCCChHHHH----HHHHHHhhCCCc
Q 020259           40 YARILVVGAGGLGCE--LLKDLALS-G--FKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEV----AAKRVMERVSGV  110 (328)
Q Consensus        40 ~~~VliiG~gglG~e--vaknL~l~-G--vg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a----~~~~l~~lnp~v  110 (328)
                      +-||.|||+|++|..  ++..|++. +  .++|.|+|-|.                   .|++.    +.+.....++..
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~-------------------~~~~~~~~~~~~~~~~~~~~~   62 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE-------------------ERLDAILTIAKKYVEEVGADL   62 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH-------------------HHHHHHHHHHHHHHHHTTCCC
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc-------------------hHHHHHHHHHHHHHHhcCCCe
Confidence            468999999999965  44445532 2  35899998442                   33333    333444466667


Q ss_pred             EEEEEecccCCcchhhhccCCEEEecCC
Q 020259          111 NIVPHFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       111 ~v~~~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      ++.....     ..+-++++|+|+.+..
T Consensus        63 ~i~~~td-----~~eaL~dad~Vv~~~~   85 (171)
T d1obba1          63 KFEKTMN-----LDDVIIDADFVINTAM   85 (171)
T ss_dssp             EEEEESC-----HHHHHTTCSEEEECCC
T ss_pred             EEEEeCC-----hhhcccCCCeEeeecc
Confidence            7666432     3566799999998855

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.24  E-value=0.044  Score=42.31  Aligned_cols=81  Identities=19%  Similarity=0.229  Sum_probs=49.6

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHhC--CCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEe
Q 020259           40 YARILVVGA-GGLGCELLKDLALSG--FKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHF  116 (328)
Q Consensus        40 ~~~VliiG~-gglG~evaknL~l~G--vg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~  116 (328)
                      .-+|.|+|+ |-+|.|+++-|...+  ..+|..+               .+....|+.        +...++...     
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~---------------~s~~~~Gk~--------i~~~~~~~~-----   53 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLL---------------ASAESAGQR--------MGFAESSLR-----   53 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEE---------------ECTTTTTCE--------EEETTEEEE-----
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEE---------------eecccCCcc--------eeeccccch-----
Confidence            357999995 889999999998654  3455554               234445552        111122111     


Q ss_pred             cccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          117 CRIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       117 ~~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                        +.....+.+++.|+++.|+.....+.+.....
T Consensus        54 --~~~~~~~~~~~~d~vf~a~p~~~s~~~~~~~~   85 (144)
T d2hjsa1          54 --VGDVDSFDFSSVGLAFFAAAAEVSRAHAERAR   85 (144)
T ss_dssp             --CEEGGGCCGGGCSEEEECSCHHHHHHHHHHHH
T ss_pred             --hccchhhhhccceEEEecCCcchhhhhccccc
Confidence              11223445678999999998766666665544

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.23  E-value=0.087  Score=43.43  Aligned_cols=35  Identities=31%  Similarity=0.515  Sum_probs=31.3

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ...+|+|||+|..|-..|..|++.|. .++|+|...
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~   82 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAE   82 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeecc
Confidence            47899999999999999999999998 799998443

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.16  E-value=0.11  Score=43.94  Aligned_cols=79  Identities=15%  Similarity=0.303  Sum_probs=52.3

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | +++.++|.| .+|+|.++|+.|+..|. ++.++|.+                   +.+.+.+++.+.+...  ++..+
T Consensus         6 L-kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~~~~~~~--~~~~~   62 (259)
T d1xq1a_           6 L-KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARN-------------------EYELNECLSKWQKKGF--QVTGS   62 (259)
T ss_dssp             C-TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             C-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--ceEEE
Confidence            5 577777777 78899999999999998 78888743                   2456666666666543  45555


Q ss_pred             ecccCCcc---------hhhh-ccCCEEEecCC
Q 020259          116 FCRIEDKD---------ISFY-NDFNIIVLGLD  138 (328)
Q Consensus       116 ~~~~~~~~---------~~~~-~~~dvVi~~~d  138 (328)
                      ..++.+..         .+.+ ...|++|.+..
T Consensus        63 ~~Dv~~~~~v~~~~~~~~~~~~g~idilvnnAG   95 (259)
T d1xq1a_          63 VCDASLRPEREKLMQTVSSMFGGKLDILINNLG   95 (259)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eccCCCHHHHHHHHHHHHHHhCCCccccccccc
Confidence            55554421         1223 34688777643

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.13  E-value=0.088  Score=44.24  Aligned_cols=76  Identities=20%  Similarity=0.193  Sum_probs=51.7

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +++.++|.| .+|+|.++|+.|+..|. ++.++|.+                   +.+++.+++.+++.+.  ++..+..
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~l~~~g~--~~~~~~~   66 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRT-------------------QKSCDSVVDEIKSFGY--ESSGYAG   66 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESS-------------------HHHHHHHHHHHHTTTC--CEEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEEc
Confidence            566666767 67999999999999997 78888743                   2456677777776544  4555555


Q ss_pred             ccCCcc---------hhhhccCCEEEec
Q 020259          118 RIEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       118 ~~~~~~---------~~~~~~~dvVi~~  136 (328)
                      ++.+..         .+.+...|++|.+
T Consensus        67 Dvt~~~~v~~~~~~~~~~~g~iDilvnn   94 (251)
T d2c07a1          67 DVSKKEEISEVINKILTEHKNVDILVNN   94 (251)
T ss_dssp             CTTCHHHHHHHHHHHHHHCSCCCEEEEC
T ss_pred             cCCCHHHHHHHHHHHHHhcCCceeeeec
Confidence            655421         2234567777765

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.13  E-value=0.1  Score=39.31  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=19.5

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCC
Q 020259           42 RILVVGA-GGLGCELLKDLALSGF   64 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~Gv   64 (328)
                      ||.|+|+ |-.|..+++.+...|.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~   25 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGH   25 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCC
Confidence            6999996 9999999988776664

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.00  E-value=0.15  Score=42.74  Aligned_cols=74  Identities=23%  Similarity=0.414  Sum_probs=51.5

Q ss_pred             CcE-EEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           41 ARI-LVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        41 ~~V-liiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +|| +|.| .+|+|.++|+.|+..|. ++.+.|.+                   +.+.+.+++.+++...  ++..+..+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~i~~~g~--~~~~~~~D   58 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYN-------------------DATAKAVASEINQAGG--HAVAVKVD   58 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEECC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEEee
Confidence            366 4446 67899999999999998 78888732                   2467777777877643  45566666


Q ss_pred             cCCcc---------hhhhccCCEEEec
Q 020259          119 IEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       119 ~~~~~---------~~~~~~~dvVi~~  136 (328)
                      +.+..         .+.+.+.|++|.+
T Consensus        59 v~~~~~v~~~~~~~~~~~g~iDilVnn   85 (255)
T d1gega_          59 VSDRDQVFAAVEQARKTLGGFDVIVNN   85 (255)
T ss_dssp             TTSHHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHhCCccEEEec
Confidence            65421         2335678888875

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.95  E-value=0.024  Score=42.53  Aligned_cols=32  Identities=25%  Similarity=0.439  Sum_probs=29.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      -.+++|||.|-+|.|+|..|...|. ++|++..
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~   56 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEF   56 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCC-eEEEEEE
Confidence            4689999999999999999999997 8999864

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.93  E-value=0.05  Score=43.15  Aligned_cols=77  Identities=12%  Similarity=0.204  Sum_probs=49.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhC-----CCeEEEEeCCccCccCCccccCCCCCCCCChHH----HHHHHHHHhhCCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSG-----FKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKA----EVAAKRVMERVSG  109 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~G-----vg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka----~a~~~~l~~lnp~  109 (328)
                      ++.||.|||+|++|...+-...+..     +++|.|+|-|.                   .|+    +.+.......+..
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~-------------------~~~~~~~~~~~~~~~~~~~~   62 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDK-------------------ERQDRIAGACDVFIREKAPD   62 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCH-------------------HHHHHHHHHHHHHHHHHCTT
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCCh-------------------hHHHHHHHHHHHHHHHhCCC
Confidence            3678999999999876443222222     25888988332                   343    4444455556666


Q ss_pred             cEEEEEecccCCcchhhhccCCEEEecCCC
Q 020259          110 VNIVPHFCRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       110 v~v~~~~~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      .+++....     ..+-++++|+||.+...
T Consensus        63 ~~~~~~~d-----~~eal~~AD~Vvitag~   87 (167)
T d1u8xx1          63 IEFAATTD-----PEEAFTDVDFVMAHIRV   87 (167)
T ss_dssp             SEEEEESC-----HHHHHSSCSEEEECCCT
T ss_pred             cceEecCC-----hhhccCCCCEEEECCCc
Confidence            66666432     45667899999988653

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.91  E-value=0.03  Score=45.42  Aligned_cols=33  Identities=21%  Similarity=0.450  Sum_probs=30.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|-+|+-+|..++++|. .++++|.+.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence            689999999999999999999998 799999665

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=93.88  E-value=0.14  Score=43.17  Aligned_cols=78  Identities=13%  Similarity=0.199  Sum_probs=54.2

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+.                  +.+++.+++.+++..+  ++..+
T Consensus         5 L-~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~------------------~~~~~~~~~~~~~~g~--~~~~~   62 (261)
T d1geea_           5 L-EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSK------------------EDEANSVLEEIKKVGG--EAIAV   62 (261)
T ss_dssp             G-TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTC--EEEEE
T ss_pred             C-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence            6 566677776 78999999999999998 788877321                  1356777777777654  55566


Q ss_pred             ecccCCcc---------hhhhccCCEEEec
Q 020259          116 FCRIEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       116 ~~~~~~~~---------~~~~~~~dvVi~~  136 (328)
                      ..++.+..         .+.+.+.|++|.+
T Consensus        63 ~~Dvt~~~~v~~~~~~~~~~~G~iDiLVnn   92 (261)
T d1geea_          63 KGDVTVESDVINLVQSAIKEFGKLDVMINN   92 (261)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCCCEeecc
Confidence            66665421         2234577888876

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.69  E-value=0.044  Score=40.47  Aligned_cols=56  Identities=18%  Similarity=0.165  Sum_probs=40.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFK--NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER  106 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg--~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l  106 (328)
                      ..+++|||.|.+|+|+|..|...|..  ++|+++...        +. ++.  ....=++.+.+.+++.
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~--------~i-L~~--~d~~~~~~l~~~l~~~   77 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE--------MI-LRG--FDHTLREELTKQLTAN   77 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS--------SS-STT--SCHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc--------hh-hcc--cchHHHHHHHHHHHhc
Confidence            36899999999999999988888764  799998532        21 121  2334466777777775

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.68  E-value=0.025  Score=44.01  Aligned_cols=32  Identities=34%  Similarity=0.636  Sum_probs=27.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +||+|||.|.+|.|+|..|.+ +. ++|+++...
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~-~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TY-EVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TS-EEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CC-CEEEEeccc
Confidence            589999999999999999975 43 899997543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.67  E-value=0.051  Score=38.93  Aligned_cols=32  Identities=25%  Similarity=0.455  Sum_probs=28.3

Q ss_pred             cCCcEEEEcCChHH-HHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVGAGGLG-CELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG~gglG-~evaknL~l~Gvg~itlvD   71 (328)
                      +..+|.+||.||+| +.+|+.|...|. +++-.|
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD   39 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSD   39 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEE
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEe
Confidence            46899999999999 777999999998 788777

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.66  E-value=0.068  Score=45.13  Aligned_cols=34  Identities=29%  Similarity=0.458  Sum_probs=28.8

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +++.++|.| .+|+|.++|+.|+..|. ++.++|.+
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   42 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRS   42 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            467777777 77899999999999998 79998854

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=93.63  E-value=0.014  Score=47.77  Aligned_cols=36  Identities=19%  Similarity=0.292  Sum_probs=31.8

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +.| .+++|.|||+|.+|.++|+.|...|. ++..+|.
T Consensus        39 ~el-~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~   74 (197)
T d1j4aa1          39 REV-RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDI   74 (197)
T ss_dssp             CCG-GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             ccc-cCCeEEEecccccchhHHHhHhhhcc-cccccCc
Confidence            458 59999999999999999999999998 6777773

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.56  E-value=0.03  Score=46.65  Aligned_cols=33  Identities=30%  Similarity=0.518  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+||+|||+|..|...|..|++.|+ +++|+|..
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            3689999999999999999999998 79999853

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=93.55  E-value=0.032  Score=44.93  Aligned_cols=39  Identities=23%  Similarity=0.253  Sum_probs=33.6

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCcc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVS   78 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~   78 (328)
                      .-++|+|+|+|-+|...++.-..+|. +++++|-+.-...
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~   66 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKE   66 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHH
Confidence            46899999999999999999999998 8999996554433

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=93.54  E-value=0.041  Score=46.29  Aligned_cols=36  Identities=22%  Similarity=0.481  Sum_probs=30.4

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      || +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+
T Consensus         2 rL-~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~   38 (247)
T d2ew8a1           2 RL-KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLV   38 (247)
T ss_dssp             TT-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            68 687788877 67999999999999998 78888743

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.51  E-value=0.091  Score=44.26  Aligned_cols=35  Identities=23%  Similarity=0.435  Sum_probs=29.9

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      || +++.++|.| .+|+|.++|+.|+..|. ++.+.|.
T Consensus         2 ~L-~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r   37 (256)
T d1k2wa_           2 RL-DGKTALITGSARGIGRAFAEAYVREGA-RVAIADI   37 (256)
T ss_dssp             TT-TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEES
T ss_pred             CC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            36 677888887 68999999999999998 7889874

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.50  E-value=0.038  Score=45.91  Aligned_cols=33  Identities=27%  Similarity=0.290  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..||+|||+|..|..+|..|++.|+ +++|+|..
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~   36 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYERS   36 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            5689999999999999999999999 89999853

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.43  E-value=0.039  Score=43.53  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=31.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ...+|+|+|+|++|.-.+..+...|..++..+|.+.
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            467899999999999999999999999999988543

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.36  E-value=0.031  Score=46.44  Aligned_cols=41  Identities=29%  Similarity=0.430  Sum_probs=37.1

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      ++| ++.||+++|+|+.|.-+++.|...|.+++.++|.+=+-
T Consensus        22 ~~l-~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi   62 (222)
T d1vl6a1          22 KKI-EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGIL   62 (222)
T ss_dssp             CCT-TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEEC
T ss_pred             CCh-hhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEE
Confidence            458 69999999999999999999999999999999976543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.33  E-value=0.11  Score=40.95  Aligned_cols=34  Identities=21%  Similarity=0.444  Sum_probs=31.2

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .-++|+|+|+|-.|-..+....++|. .++++|-+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~   64 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDIN   64 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCc
Confidence            47999999999999999999999996 89999943

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.29  E-value=0.033  Score=44.90  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=30.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .+|.|||+|-+|+.+|-.++++|. +++++|.+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence            579999999999999999999998 799999764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.28  E-value=0.043  Score=45.69  Aligned_cols=33  Identities=24%  Similarity=0.362  Sum_probs=30.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +|+|||+|..|..+|..|.+.|+..++|+|...
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            699999999999999999999998999998643

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.28  E-value=0.038  Score=46.38  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=31.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      ..|+|||+|-+|+.+|..|++.|. +++|+|.+.+.
T Consensus         5 ~DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~~~   39 (276)
T d1ryia1           5 YEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   39 (276)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCC
Confidence            469999999999999999999996 89999987654

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.27  Score=40.22  Aligned_cols=37  Identities=22%  Similarity=0.495  Sum_probs=31.3

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCC-CeEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGF-KNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gv-g~itlvD~d   73 (328)
                      +| ++.+|+|.| .|-+|.++++.|...|. .+++++..+
T Consensus        11 ~m-~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~   49 (232)
T d2bkaa1          11 RM-QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRR   49 (232)
T ss_dssp             HH-TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESS
T ss_pred             CC-CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecC
Confidence            46 578899998 88999999999999886 589888654

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.26  E-value=0.039  Score=43.30  Aligned_cols=48  Identities=29%  Similarity=0.331  Sum_probs=38.6

Q ss_pred             cEEEE-cCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCC
Q 020259           42 RILVV-GAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSG  109 (328)
Q Consensus        42 ~Vlii-G~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~  109 (328)
                      ||.|+ |+|++|..+|+.|+..|. ++++++.+.                   .|++.+.+.+.+.-+.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~-------------------e~~~~l~~~i~~~~~~   50 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRRE-------------------EKAEAKAAEYRRIAGD   50 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSH-------------------HHHHHHHHHHHHHHSS
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHhcCCC
Confidence            68999 799999999999999998 788887432                   5777888887765443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.25  E-value=0.24  Score=41.65  Aligned_cols=62  Identities=19%  Similarity=0.289  Sum_probs=45.4

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ++++++|.| .+|+|.++|+.|+..|. ++.++|.+                   ..+.+.+.+.+++...  ++..+
T Consensus         4 L-~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~-------------------~~~l~~~~~~~~~~~~--~~~~~   60 (258)
T d1ae1a_           4 L-KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRN-------------------EKELDECLEIWREKGL--NVEGS   60 (258)
T ss_dssp             C-TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             C-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--CceEE
Confidence            5 588899998 88999999999999998 79998843                   2456666777766544  34444


Q ss_pred             ecccCC
Q 020259          116 FCRIED  121 (328)
Q Consensus       116 ~~~~~~  121 (328)
                      ..++.+
T Consensus        61 ~~D~s~   66 (258)
T d1ae1a_          61 VCDLLS   66 (258)
T ss_dssp             ECCTTC
T ss_pred             EeecCC
Confidence            455543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.24  E-value=0.42  Score=37.06  Aligned_cols=37  Identities=19%  Similarity=0.337  Sum_probs=32.5

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++...+|+|+|+|++|.-.+..+...|..+++.+|..
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~   62 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN   62 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecch
Confidence            4356789999999999999999999999999998744

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.20  E-value=0.17  Score=39.46  Aligned_cols=32  Identities=25%  Similarity=0.226  Sum_probs=28.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ...+|+|+|+|++|.-.+..+...|. ++..+|
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~   58 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGA-ETYVIS   58 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccc-cccccc
Confidence            57899999999999999999889998 566777

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.085  Score=40.00  Aligned_cols=61  Identities=18%  Similarity=0.189  Sum_probs=40.7

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHH----hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLAL----SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER  106 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l----~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l  106 (328)
                      +.++...+++|||.|.+|+|+|-.|.+    .|+ ++++++...--   +.+       -.++.-++.+.+.+++.
T Consensus        32 ~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~~~~---l~~-------~~~~~~~~~~~~~l~~~   96 (137)
T d1m6ia2          32 KISREVKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEKGN---MGK-------ILPEYLSNWTMEKVRRE   96 (137)
T ss_dssp             HHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSSST---TTT-------TSCHHHHHHHHHHHHTT
T ss_pred             HHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEecccccC---Ccc-------cCCHHHHHHHHHHHHhC
Confidence            344346789999999999999999974    576 89998753321   111       12334456667777764

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.07  E-value=0.1  Score=43.61  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=30.9

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      || +++.++|.| .+|+|.++++.|+..|. ++.++|.+.
T Consensus         3 ~l-~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~   40 (245)
T d2ag5a1           3 RL-DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINE   40 (245)
T ss_dssp             TT-TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CC-CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCH
Confidence            56 567777766 88999999999999997 899998654

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=93.04  E-value=0.25  Score=38.21  Aligned_cols=69  Identities=20%  Similarity=0.185  Sum_probs=40.5

Q ss_pred             CcEEEEcCChHHHH-HHHHHHHh-CCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           41 ARILVVGAGGLGCE-LLKDLALS-GFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        41 ~~VliiG~gglG~e-vaknL~l~-Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      -||.|||+|.+|.. .+..|... ++.-+.++|.+                   ..|++..++...     +.       
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~-------------------~~~~~~~~~~~~-----~~-------   50 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPT-------------------RAKALPICESWR-----IP-------   50 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSS-------------------CTTHHHHHHHHT-----CC-------
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEech-------------------hHhhhhhhhccc-----cc-------
Confidence            36999999999987 46666543 44334455532                   234444444331     11       


Q ss_pred             cCCcchhhhccCCEEEecCCCH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSI  140 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~  140 (328)
                      ..+...+..++.|+|+.|+.+.
T Consensus        51 ~~~~~~~l~~~~D~V~I~tp~~   72 (164)
T d1tlta1          51 YADSLSSLAASCDAVFVHSSTA   72 (164)
T ss_dssp             BCSSHHHHHTTCSEEEECSCTT
T ss_pred             ccccchhhhhhcccccccccch
Confidence            1222345567899998887764

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=93.03  E-value=0.071  Score=42.03  Aligned_cols=35  Identities=23%  Similarity=0.434  Sum_probs=29.2

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFK-NLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d   73 (328)
                      +.++|+|||.|.+|.|+|..|.+.|.. .|+++.+.
T Consensus         2 m~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           2 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            368899999999999999999999975 56665543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.22  Score=42.06  Aligned_cols=76  Identities=17%  Similarity=0.249  Sum_probs=53.9

Q ss_pred             CCcEEEE--cCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           40 YARILVV--GAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        40 ~~~Vlii--G~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      ..||.||  |.+|+|-++|+.|+..|-.++.+.+.+                   ..|.+.+++.|++..+.+.  .+..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~-------------------~~~~~~~~~~l~~~~~~~~--~~~~   60 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD-------------------VTRGQAAVQQLQAEGLSPR--FHQL   60 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS-------------------HHHHHHHHHHHHHTTCCCE--EEEC
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECC-------------------HHHHHHHHHHHHhcCCcEE--EEEE
Confidence            5789888  689999999999998854588887633                   2577888888888766544  4555


Q ss_pred             ccCCcc---------hhhhccCCEEEec
Q 020259          118 RIEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       118 ~~~~~~---------~~~~~~~dvVi~~  136 (328)
                      ++.+..         .+.+.+.|++|+.
T Consensus        61 Dvs~~~sv~~~~~~~~~~~g~iDiLVnN   88 (275)
T d1wmaa1          61 DIDDLQSIRALRDFLRKEYGGLDVLVNN   88 (275)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSSEEEEEEC
T ss_pred             ecCCHHHHHHHHHHHHHhcCCcEEEEEc
Confidence            665421         2234578888875

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.95  E-value=0.078  Score=41.45  Aligned_cols=36  Identities=25%  Similarity=0.465  Sum_probs=29.9

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFK-NLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d~   74 (328)
                      ++.+|+|||.|.+|.|+|..|.+.|.. ++++++...
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            467999999999999999999999985 566665543

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.88  E-value=0.043  Score=44.65  Aligned_cols=41  Identities=22%  Similarity=0.348  Sum_probs=33.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQ   83 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~   83 (328)
                      +|.|||+|-+|..+|..|+..|. +++.+|.|.=....+++.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~g   42 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQG   42 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhccc
Confidence            69999999999999999999997 799999876544444433

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.86  E-value=0.29  Score=40.89  Aligned_cols=37  Identities=22%  Similarity=0.417  Sum_probs=31.7

Q ss_pred             HHHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .|| +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+
T Consensus         2 ~rl-~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   39 (250)
T d1ydea1           2 TRY-AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKD   39 (250)
T ss_dssp             CTT-TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            367 688888888 68999999999999998 79998854

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=92.82  E-value=0.31  Score=37.74  Aligned_cols=31  Identities=23%  Similarity=0.224  Sum_probs=22.3

Q ss_pred             CcEEEEcCChHHHH-HHHHHHHhCCCeEEEEe
Q 020259           41 ARILVVGAGGLGCE-LLKDLALSGFKNLEVID   71 (328)
Q Consensus        41 ~~VliiG~gglG~e-vaknL~l~Gvg~itlvD   71 (328)
                      -||.|||+|..|.. .+..|...+--.+.++|
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d   33 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCT   33 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEEC
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEE
Confidence            37999999999976 56676655443556665

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.75  E-value=0.29  Score=41.07  Aligned_cols=62  Identities=18%  Similarity=0.303  Sum_probs=43.0

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+                   +.+.+.+.+.+++...  ++..+
T Consensus         6 L-~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~~~~~g~--~~~~~   62 (259)
T d2ae2a_           6 L-EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRN-------------------QKELNDCLTQWRSKGF--KVEAS   62 (259)
T ss_dssp             C-TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--EEEEE
T ss_pred             C-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--CceEE
Confidence            5 577777777 67899999999999998 78888743                   2455556666665433  44445


Q ss_pred             ecccCC
Q 020259          116 FCRIED  121 (328)
Q Consensus       116 ~~~~~~  121 (328)
                      ..++.+
T Consensus        63 ~~Dv~~   68 (259)
T d2ae2a_          63 VCDLSS   68 (259)
T ss_dssp             ECCTTC
T ss_pred             EeeCCC
Confidence            555543

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.74  E-value=0.38  Score=36.36  Aligned_cols=22  Identities=32%  Similarity=0.653  Sum_probs=18.3

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhC
Q 020259           42 RILVVGA-GGLGCELLKDLALSG   63 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~G   63 (328)
                      ||.|+|+ |-.|.++++.+....
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~   23 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAAD   23 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHST
T ss_pred             CEEEECCCCHHHHHHHHHHHhCC
Confidence            6999995 999999999876543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=92.70  E-value=0.056  Score=44.18  Aligned_cols=35  Identities=37%  Similarity=0.434  Sum_probs=31.6

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | +.++|+|-|+|.+|..+|+.|...|. ++++.|.|
T Consensus        25 L-~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d   59 (201)
T d1c1da1          25 L-DGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTD   59 (201)
T ss_dssp             S-TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             C-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecch
Confidence            6 68999999999999999999999995 78888855

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.55  E-value=0.14  Score=42.99  Aligned_cols=33  Identities=21%  Similarity=0.359  Sum_probs=26.4

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +++.++|.| .+|+|.++|+.|+..|. ++.+.|.
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r   36 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGF   36 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            355555555 78899999999999998 7888874

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.47  E-value=0.32  Score=41.61  Aligned_cols=32  Identities=31%  Similarity=0.556  Sum_probs=26.7

Q ss_pred             CCcEEEEcCC-hHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAG-GLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~g-glG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++||+|.|+. -+|+.+++.|...|. +++.+|.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~   33 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   33 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            3789999954 599999999999997 6888873

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.43  E-value=0.062  Score=46.81  Aligned_cols=35  Identities=34%  Similarity=0.524  Sum_probs=31.2

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ++++|+|||+|-.|.-+|..|+..|. +++|+|...
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCC
Confidence            37899999999999999999999997 899998544

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=92.36  E-value=0.4  Score=40.03  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=27.2

Q ss_pred             cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEe
Q 020259           39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD   71 (328)
                      +++||||.|+ |-+|+++++.|...|. ++++++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~   34 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH-PTYVLF   34 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEE
Confidence            4688999995 7899999999999996 677764

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=92.25  E-value=0.073  Score=43.23  Aligned_cols=37  Identities=22%  Similarity=0.449  Sum_probs=31.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCccCcc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFK--NLEVIDMDRIEVS   78 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg--~itlvD~d~v~~~   78 (328)
                      ||.|||.||-|+.++.+|...|+.  ++..+|.|.-...
T Consensus         2 kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~   40 (194)
T d1w5fa1           2 KIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLE   40 (194)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHH
T ss_pred             eEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHh
Confidence            699999999999999999999986  5577787775544

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.22  E-value=0.33  Score=37.38  Aligned_cols=77  Identities=18%  Similarity=0.199  Sum_probs=48.4

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCC-e-----EEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           42 RILVVGA-GGLGCELLKDLALSGFK-N-----LEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~Gvg-~-----itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      ||.|+|+ |.+|+.++-.|+..++- .     +.++|.                 +....|.+..+..+........-..
T Consensus         6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~   68 (154)
T d1y7ta1           6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEI-----------------PQAMKALEGVVMELEDCAFPLLAGL   68 (154)
T ss_dssp             EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECC-----------------GGGHHHHHHHHHHHHTTTCTTEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcc-----------------ccchhhHcCchhhhhcccccccccc
Confidence            8999997 99999999999988763 2     233321                 2223456666666665543322111


Q ss_pred             EecccCCcchhhhccCCEEEecCC
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      .   ......+-+++.|+||.+..
T Consensus        69 ~---~~~~~~~~~~~advViitaG   89 (154)
T d1y7ta1          69 E---ATDDPKVAFKDADYALLVGA   89 (154)
T ss_dssp             E---EESCHHHHTTTCSEEEECCC
T ss_pred             c---cCCchhhhcccccEEEeecC
Confidence            1   12234667899999988754

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=92.16  E-value=0.065  Score=43.44  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=30.8

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .| .+++|.|||+|.+|.++|+-|...|+ ++..+|+
T Consensus        46 eL-~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~   80 (193)
T d1mx3a1          46 RI-RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDP   80 (193)
T ss_dssp             CC-TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECT
T ss_pred             ee-eCceEEEeccccccccceeeeecccc-ceeeccC
Confidence            37 58999999999999999999998887 6777775

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.10  E-value=0.096  Score=38.40  Aligned_cols=56  Identities=13%  Similarity=0.093  Sum_probs=37.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC--CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF--KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER  106 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv--g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l  106 (328)
                      -.+++|||.|.+|.|+|..|...+-  .++++++...    .+-++       ..+.=+..+.+.+++.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~----~il~~-------~d~~~~~~~~~~l~~~   75 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD----MILRG-------FDSELRKQLTEQLRAN   75 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS----SSSTT-------SCHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc----ccccc-------ccchhhHHHHHHHhhC
Confidence            3689999999999999998876632  2899987432    12222       1223355666667765

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.10  E-value=0.15  Score=40.37  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=19.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHhC
Q 020259           42 RILVVGAGGLGCELLKDLALSG   63 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~G   63 (328)
                      ||.|||+|.+|...++.|...+
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~   24 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAP   24 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCT
T ss_pred             EEEEEcCCHHHHHHHHHHHhCC
Confidence            6999999999999999998763

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.10  E-value=0.067  Score=45.32  Aligned_cols=32  Identities=28%  Similarity=0.429  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .+|+|||+|..|...|..|+..|. +++|+|..
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~   62 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEAS   62 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            489999999999999999999998 89999954

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.00  E-value=0.1  Score=43.69  Aligned_cols=36  Identities=25%  Similarity=0.330  Sum_probs=30.4

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      || +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+
T Consensus         3 ~L-~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~   39 (244)
T d1nffa_           3 RL-TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDIL   39 (244)
T ss_dssp             TT-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cc-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            56 677788887 68999999999999998 78898854

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.99  E-value=0.1  Score=42.46  Aligned_cols=37  Identities=22%  Similarity=0.216  Sum_probs=32.2

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +.| .+++|.|||+|.+|.++++.|...|+ ++..+|+.
T Consensus        41 ~~l-~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~   77 (199)
T d1dxya1          41 KEL-GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPY   77 (199)
T ss_dssp             CCG-GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             ccc-cceeeeeeecccccccccccccccce-eeeccCCc
Confidence            357 58999999999999999999999998 67788753

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.98  E-value=0.13  Score=41.29  Aligned_cols=30  Identities=23%  Similarity=0.287  Sum_probs=25.2

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ++|||.| .|.+|.++++.|+..|. ++++++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~-~v~v~~   34 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSD-KFVAKG   34 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTT-TCEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCC-cEEEEE
Confidence            6899999 79999999999999996 445554

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.94  E-value=0.14  Score=39.96  Aligned_cols=35  Identities=29%  Similarity=0.350  Sum_probs=30.7

Q ss_pred             cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ...+|+|+|+ |++|.-++..+...|..+++++|.+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~   62 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR   62 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccc
Confidence            4668999995 9999999999999999999999854

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.91  E-value=0.11  Score=40.42  Aligned_cols=35  Identities=23%  Similarity=0.403  Sum_probs=29.7

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++...+|+|+|+|++|.-++..+-..|. ++..+|.
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~   59 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDI   59 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecc
Confidence            4357889999999999999999999995 7888873

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.90  E-value=0.29  Score=41.26  Aligned_cols=78  Identities=19%  Similarity=0.259  Sum_probs=49.9

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | +++.++|.| .+|+|.++++.|+..|. ++.+.|.+.                  ..+++.+++.+++.+.  ++...
T Consensus        16 L-~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~------------------~~~~~~~~~~~~~~g~--~~~~~   73 (272)
T d1g0oa_          16 L-EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANS------------------TESAEEVVAAIKKNGS--DAACV   73 (272)
T ss_dssp             C-TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             C-CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCc------------------hHHHHHHHHHHHhhCC--ceeeE
Confidence            7 577777777 89999999999999998 688877432                  1345556666666544  33444


Q ss_pred             ecccCCcc---------hhhhccCCEEEec
Q 020259          116 FCRIEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       116 ~~~~~~~~---------~~~~~~~dvVi~~  136 (328)
                      ..++.+..         .+.+.+.|++|.+
T Consensus        74 ~~D~~~~~~v~~~~~~~~~~~g~idilV~n  103 (272)
T d1g0oa_          74 KANVGVVEDIVRMFEEAVKIFGKLDIVCSN  103 (272)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             eCCCCCHHHHHHHHHHHHHHhCCCCccccc
Confidence            44443311         2234566777665

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.89  E-value=0.33  Score=40.46  Aligned_cols=63  Identities=16%  Similarity=0.190  Sum_probs=49.5

Q ss_pred             CCcEEEE-c-CChHHHHHHHHHHH---hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEE
Q 020259           40 YARILVV-G-AGGLGCELLKDLAL---SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        40 ~~~Vlii-G-~gglG~evaknL~l---~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~  114 (328)
                      +.||+|| | .+|+|.++|+.|++   .|. ++.++|.+                   ..+.+.+++.|+..+|..++..
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~-------------------~~~l~~~~~~l~~~~~~~~~~~   64 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARS-------------------ESMLRQLKEELGAQQPDLKVVL   64 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTSEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECC-------------------HHHHHHHHHHHHhhcCCceEEE
Confidence            4567777 6 67999999999997   454 78887632                   3578888899999899999999


Q ss_pred             EecccCCc
Q 020259          115 HFCRIEDK  122 (328)
Q Consensus       115 ~~~~~~~~  122 (328)
                      +..++.+.
T Consensus        65 ~~~Dvs~~   72 (259)
T d1oaaa_          65 AAADLGTE   72 (259)
T ss_dssp             EECCTTSH
T ss_pred             EEccCCCH
Confidence            88888763

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=91.83  E-value=0.13  Score=42.91  Aligned_cols=36  Identities=36%  Similarity=0.481  Sum_probs=30.1

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      || +++.++|.| .+|+|.++|+.|+..|. ++.+.+.+
T Consensus         2 ~l-~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~   38 (241)
T d2a4ka1           2 RL-SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDRE   38 (241)
T ss_dssp             TT-TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            46 678888887 67899999999999998 78888743

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.80  E-value=0.48  Score=39.27  Aligned_cols=76  Identities=16%  Similarity=0.231  Sum_probs=48.9

Q ss_pred             CcEEEE--cCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           41 ARILVV--GAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        41 ~~Vlii--G~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      +.|+||  |.+|+|.++|+.|+..|. ++.+.|...                  ..+.+.+.+.+++...  ++..+..+
T Consensus         1 spV~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~------------------~~~~~~~~~~~~~~g~--~~~~~~~D   59 (244)
T d1edoa_           1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARS------------------AKAAEEVSKQIEAYGG--QAITFGGD   59 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHHTC--EEEEEECC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCC------------------HHHHHHHHHHHHHcCC--cEEEEeCC
Confidence            346666  488999999999999998 677766321                  1346666777766543  55556666


Q ss_pred             cCCcc---------hhhhccCCEEEecC
Q 020259          119 IEDKD---------ISFYNDFNIIVLGL  137 (328)
Q Consensus       119 ~~~~~---------~~~~~~~dvVi~~~  137 (328)
                      +.+..         .+.+.+.|++|.+.
T Consensus        60 v~~~~~v~~~~~~~~~~~g~iDiLVnnA   87 (244)
T d1edoa_          60 VSKEADVEAMMKTAIDAWGTIDVVVNNA   87 (244)
T ss_dssp             TTSHHHHHHHHHHHHHHSSCCSEEEECC
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCcccccc
Confidence            65421         22235677777653

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.75  E-value=0.24  Score=34.66  Aligned_cols=65  Identities=14%  Similarity=0.207  Sum_probs=43.4

Q ss_pred             CcEEEEcCChHHH-HHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           41 ARILVVGAGGLGC-ELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        41 ~~VliiG~gglG~-evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      .||.+||.||+|- .+|+.|...|. +++--|..        ..              ...++|++..  +++..     
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~--------~~--------------~~t~~L~~~G--i~i~~-----   51 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIE--------ET--------------ERTAYLRKLG--IPIFV-----   51 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSS--------CC--------------HHHHHHHHTT--CCEES-----
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCC--------CC--------------hhHHHHHHCC--CeEEe-----
Confidence            5799999999996 77999999998 67776621        11              1234577653  44431     


Q ss_pred             CCcchhhhccCCEEEec
Q 020259          120 EDKDISFYNDFNIIVLG  136 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~  136 (328)
                       ..+.+.+.+.|+||.+
T Consensus        52 -gh~~~~i~~~d~vV~S   67 (89)
T d1j6ua1          52 -PHSADNWYDPDLVIKT   67 (89)
T ss_dssp             -SCCTTSCCCCSEEEEC
T ss_pred             -eecccccCCCCEEEEe
Confidence             1234445789999877

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=91.65  E-value=0.26  Score=41.05  Aligned_cols=65  Identities=22%  Similarity=0.324  Sum_probs=45.3

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      .+..|+|.| .||+|.++++.|+..|..+|.|+-.          .      .....+++.+.+.+.+.  ..++..+..
T Consensus         8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R----------~------~~~~~~~~~~~~~l~~~--g~~v~~~~~   69 (259)
T d2fr1a1           8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSR----------S------GPDADGAGELVAELEAL--GARTTVAAC   69 (259)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEES----------S------GGGSTTHHHHHHHHHHT--TCEEEEEEC
T ss_pred             CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC----------C------ccCHHHHHHHHHHHHhc--ccccccccc
Confidence            567888988 7999999999999999988888631          1      11123455566666655  456666666


Q ss_pred             ccCC
Q 020259          118 RIED  121 (328)
Q Consensus       118 ~~~~  121 (328)
                      ++.+
T Consensus        70 Dv~d   73 (259)
T d2fr1a1          70 DVTD   73 (259)
T ss_dssp             CTTC
T ss_pred             ccch
Confidence            6654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=91.48  E-value=0.38  Score=40.29  Aligned_cols=35  Identities=26%  Similarity=0.436  Sum_probs=29.6

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+
T Consensus         3 L-~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~   38 (254)
T d1hdca_           3 L-SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVL   38 (254)
T ss_dssp             C-CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             C-CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            5 577788887 67999999999999998 69998853

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=91.41  E-value=0.073  Score=39.79  Aligned_cols=91  Identities=15%  Similarity=0.142  Sum_probs=53.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccC---CccccCCCCC---------CCC-----------ChHHH
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSN---LNRQFLFRME---------DVG-----------KPKAE   97 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~n---l~r~~l~~~~---------diG-----------~~Ka~   97 (328)
                      +||+|+|.|.+|.++++.|...   .+.++|.|.-....   .+.++++...         .+.           -....
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~---~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~   77 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS---EVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETI   77 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG---GEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHcCC---CCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhH
Confidence            4799999999999999999543   45677765542221   1222222210         011           13445


Q ss_pred             HHHHHHHhhCCCcEEEEEecccCCcchhhh--ccCCEEEec
Q 020259           98 VAAKRVMERVSGVNIVPHFCRIEDKDISFY--NDFNIIVLG  136 (328)
Q Consensus        98 a~~~~l~~lnp~v~v~~~~~~~~~~~~~~~--~~~dvVi~~  136 (328)
                      .++..++++||.+++.+...+..  ..+.+  .++|.||..
T Consensus        78 ~~~~~~r~~~~~~~iia~~~~~~--~~~~l~~~G~d~vi~p  116 (129)
T d2fy8a1          78 HCILGIRKIDESVRIIAEAERYE--NIEQLRMAGADQVISP  116 (129)
T ss_dssp             HHHHHHHHHCSSSCEEEECSSGG--GHHHHHHHHCSEEECH
T ss_pred             HHHHHHHHHCCCceEEEEEcCHH--HHHHHHHCCCCEEECh
Confidence            56667788899888777654332  22222  357777744

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=91.37  E-value=0.24  Score=43.38  Aligned_cols=31  Identities=26%  Similarity=0.330  Sum_probs=25.1

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +.|||.| .|=+|+.+++.|...|. +++.+|.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r   33 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKR   33 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            4567888 55599999999999996 7777774

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.26  E-value=0.73  Score=37.96  Aligned_cols=75  Identities=16%  Similarity=0.177  Sum_probs=47.3

Q ss_pred             CcEE-EEc-CChHHHHHHHHHHHhCCC------eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEE
Q 020259           41 ARIL-VVG-AGGLGCELLKDLALSGFK------NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNI  112 (328)
Q Consensus        41 ~~Vl-iiG-~gglG~evaknL~l~Gvg------~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v  112 (328)
                      ++|+ |-| .+|+|.++|+.|+..|..      .+.+.|.+                   +.+.+.+++.+++.+  .++
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~-------------------~~~l~~~~~~~~~~g--~~~   59 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT-------------------AADLEKISLECRAEG--ALT   59 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESC-------------------HHHHHHHHHHHHTTT--CEE
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCC-------------------HHHHHHHHHHHHhcC--CcE
Confidence            3554 446 689999999999999985      25555422                   245566666666643  355


Q ss_pred             EEEecccCCcc---------hhhhccCCEEEec
Q 020259          113 VPHFCRIEDKD---------ISFYNDFNIIVLG  136 (328)
Q Consensus       113 ~~~~~~~~~~~---------~~~~~~~dvVi~~  136 (328)
                      ..+..++.+..         .+.+...|++|.+
T Consensus        60 ~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnn   92 (240)
T d2bd0a1          60 DTITADISDMADVRRLTTHIVERYGHIDCLVNN   92 (240)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHcCCcceeecc
Confidence            55556665421         2334567877765

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.20  E-value=0.21  Score=40.48  Aligned_cols=34  Identities=18%  Similarity=0.178  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC------eEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFK------NLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg------~itlvD~d~   74 (328)
                      .||+|||+|.-|-..|..|.+.|..      ++||+|...
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            4899999999999999999999952      799998644

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.16  E-value=0.59  Score=39.12  Aligned_cols=34  Identities=29%  Similarity=0.455  Sum_probs=29.5

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      | ++++++|.| .+|+|.++|+.|+..|. ++.+++.
T Consensus        12 L-~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r   46 (269)
T d1xu9a_          12 L-QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTAR   46 (269)
T ss_dssp             G-TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             c-CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            7 688888888 67899999999999997 7888874

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.07  E-value=0.27  Score=37.94  Aligned_cols=79  Identities=18%  Similarity=0.217  Sum_probs=46.4

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCC----CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhh-CCCcEEEE
Q 020259           41 ARILVVGA-GGLGCELLKDLALSGF----KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMER-VSGVNIVP  114 (328)
Q Consensus        41 ~~VliiG~-gglG~evaknL~l~Gv----g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~l-np~v~v~~  114 (328)
                      .||.|||+ |.+|+.++-.|+..++    ..+.|++.|.               +-.+.|++.+.-.+... .+......
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~   68 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDI---------------TPMMGVLDGVLMELQDCALPLLKDVI   68 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECC---------------GGGHHHHHHHHHHHHHTCCTTEEEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecC---------------ccchhhhhhhhhhhcccccccccccc
Confidence            48999995 9999999999986665    2333433222               11223455555444443 33322221


Q ss_pred             EecccCCcchhhhccCCEEEecCC
Q 020259          115 HFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       115 ~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      .    .....+-+++.|+||.+..
T Consensus        69 ~----~~~~~~~~~~~dvVVitag   88 (154)
T d5mdha1          69 A----TDKEEIAFKDLDVAILVGS   88 (154)
T ss_dssp             E----ESCHHHHTTTCSEEEECCS
T ss_pred             c----CcccccccCCceEEEEecc
Confidence            1    2234567789999987754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.03  E-value=0.097  Score=42.55  Aligned_cols=33  Identities=21%  Similarity=0.252  Sum_probs=28.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCC-----eEEEEeCCc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFK-----NLEVIDMDR   74 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg-----~itlvD~d~   74 (328)
                      ||+|||+|-+|..+|..|+..|..     +.++++.+.
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~   39 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF   39 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence            699999999999999999999975     577776553

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=91.01  E-value=0.61  Score=36.75  Aligned_cols=78  Identities=21%  Similarity=0.187  Sum_probs=49.0

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHhCC-C-----eEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhC-CCcE
Q 020259           40 YARILVVGA-GGLGCELLKDLALSGF-K-----NLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERV-SGVN  111 (328)
Q Consensus        40 ~~~VliiG~-gglG~evaknL~l~Gv-g-----~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~ln-p~v~  111 (328)
                      -.||.|+|+ |.+|..++-.|+...+ |     .|.++|-+.                 .+.+++..+-.+...- |...
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~-----------------~~~~l~g~~mdl~d~a~~~~~   86 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER-----------------SFQALEGVAMELEDSLYPLLR   86 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG-----------------GHHHHHHHHHHHHTTTCTTEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc-----------------ccchhcchhhhhccccccccc
Confidence            447999996 9999999999997665 2     455544221                 1235566665565543 2322


Q ss_pred             EEEEecccCCcchhhhccCCEEEecCC
Q 020259          112 IVPHFCRIEDKDISFYNDFNIIVLGLD  138 (328)
Q Consensus       112 v~~~~~~~~~~~~~~~~~~dvVi~~~d  138 (328)
                      -...    .....+-+++.|+||.+..
T Consensus        87 ~~~~----~~~~~~~~~~aDvVvi~ag  109 (175)
T d7mdha1          87 EVSI----GIDPYEVFEDVDWALLIGA  109 (175)
T ss_dssp             EEEE----ESCHHHHTTTCSEEEECCC
T ss_pred             Cccc----cccchhhccCCceEEEeec
Confidence            2222    2235677899999987754

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.00  E-value=0.21  Score=43.11  Aligned_cols=85  Identities=20%  Similarity=0.323  Sum_probs=51.3

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +++.++|-| .+|+|.++|+.|+..|. ++.+.|-+.- ....         .-.+.+++.+.+.+.....  .......
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~--~~~~d~~   72 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGD-FKGV---------GKGSSAADKVVEEIRRRGG--KAVANYD   72 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBC-TTSC---------BCCSHHHHHHHHHHHHTTC--EEEEECC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCch-hhhh---------hhhHHHHHHHHHHHhhccc--ccccccc
Confidence            466666666 78999999999999998 7888874321 1111         1124566777777766543  2333322


Q ss_pred             ccCCc------chhhhccCCEEEec
Q 020259          118 RIEDK------DISFYNDFNIIVLG  136 (328)
Q Consensus       118 ~~~~~------~~~~~~~~dvVi~~  136 (328)
                      +..+.      ..+.+.+.|++|++
T Consensus        73 ~~~~~~~~v~~~~~~~G~iDiLVnN   97 (302)
T d1gz6a_          73 SVEAGEKLVKTALDTFGRIDVVVNN   97 (302)
T ss_dssp             CGGGHHHHHHHHHHHTSCCCEEEEC
T ss_pred             hHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            22221      12345678988876

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.86  E-value=0.1  Score=41.19  Aligned_cols=77  Identities=14%  Similarity=0.124  Sum_probs=45.0

Q ss_pred             CcEEEEcCChHHH--HHHHHHHH---hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHH----HHHhhCCCcE
Q 020259           41 ARILVVGAGGLGC--ELLKDLAL---SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAK----RVMERVSGVN  111 (328)
Q Consensus        41 ~~VliiG~gglG~--evaknL~l---~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~----~l~~lnp~v~  111 (328)
                      .||.|||+|++|.  .++-.+..   ..+++|.|+|-+.                 ++.|.+++-.    ...+.+..++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e-----------------~~~~~~~~d~~~~~~~~~~~~~~~   64 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE-----------------GKEKLEIVGALAKRMVEKAGVPIE   64 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG-----------------GHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCc-----------------cHHHHHHHHHHHHHHHHhcCCCce
Confidence            4799999997663  34333333   2346888888332                 1123333332    2334566666


Q ss_pred             EEEEecccCCcchhhhccCCEEEecCCC
Q 020259          112 IVPHFCRIEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       112 v~~~~~~~~~~~~~~~~~~dvVi~~~d~  139 (328)
                      +...+.     ..+-++++|+||.+...
T Consensus        65 ~~~~td-----~~~al~gaDvVv~ta~~   87 (169)
T d1s6ya1          65 IHLTLD-----RRRALDGADFVTTQFRV   87 (169)
T ss_dssp             EEEESC-----HHHHHTTCSEEEECCCT
T ss_pred             eeecCC-----chhhcCCCCEEEEcccc
Confidence            665433     24557899999988664

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=90.84  E-value=0.58  Score=40.11  Aligned_cols=31  Identities=26%  Similarity=0.450  Sum_probs=26.0

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           42 RILVVGA-GGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ||||.|+ |-+|+.+++.|...|--++..+|.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~   33 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDI   33 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            6999985 559999999999999557888874

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.82  E-value=0.16  Score=41.00  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=32.2

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ++...+|+|+|+|++|.-.+..+...|.+++.++|.+
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            4357789999999999999999889999999999844

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=90.81  E-value=0.086  Score=43.62  Aligned_cols=31  Identities=23%  Similarity=0.365  Sum_probs=28.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +|+|||+|..|...|..|+..|. +++|+|..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESS   32 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            69999999999999999999998 79999853

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.80  E-value=0.12  Score=41.98  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=30.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +..++|||+|..|.+.|..+++.|. +++|+|.+.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~~   38 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQA   38 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            6789999999999999999999997 799998654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.73  E-value=0.12  Score=43.32  Aligned_cols=33  Identities=15%  Similarity=0.480  Sum_probs=30.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +..||+|||+|--|-..|..|+.+|. +++|++.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa   36 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEA   36 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            47889999999999999999999998 7999875

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.59  E-value=0.15  Score=39.57  Aligned_cols=31  Identities=16%  Similarity=0.319  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEE
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVI   70 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlv   70 (328)
                      ..+|+|||.|-+|.+.|..+.+.|..+++++
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi   75 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLV   75 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEE
Confidence            4689999999999999999999999999987

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.57  E-value=0.15  Score=40.67  Aligned_cols=32  Identities=16%  Similarity=0.281  Sum_probs=28.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFK-NLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg-~itlvD~d   73 (328)
                      ||+|||.|.+|.|+|..|...+-+ +|++++.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            699999999999999999998775 79999854

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=90.54  E-value=0.66  Score=40.62  Aligned_cols=75  Identities=15%  Similarity=0.134  Sum_probs=56.3

Q ss_pred             CCcEEEEcCChHHHHHHHHH-HHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDL-ALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL-~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..++.|||+|..+-.-++.+ ...++.+|.++|.+                   ..+++..++++++ .++++++..   
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~-------------------~~~~~~~~~~l~~-~~g~~v~~~---  184 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTD-------------------PLATAKLIANLKE-YSGLTIRRA---  184 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSS-------------------HHHHHHHHHHHTT-CTTCEEEEC---
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecC-------------------hHHHHHHHHhhhh-ccCCCceec---
Confidence            46799999999999877755 56788999998643                   3567778888865 456776553   


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                        +..++.++++|+|+.|+.+
T Consensus       185 --~s~~eav~~ADIi~t~Tas  203 (340)
T d1x7da_         185 --SSVAEAVKGVDIITTVTAD  203 (340)
T ss_dssp             --SSHHHHHTTCSEEEECCCC
T ss_pred             --CCHHHHHhcCCceeecccc
Confidence              2356778999999988754

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=90.51  E-value=0.67  Score=39.88  Aligned_cols=79  Identities=15%  Similarity=0.085  Sum_probs=48.1

Q ss_pred             CCcEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGG-LGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gg-lG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      .++|||.|+.| +|+++++.|...|..-+.+++           .         ..|.+-+.+......+.-.......+
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR-----------~---------~~~~~~~~~~~~~~~~~~~~~~~~~D   70 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR-----------S---------ASKLANLQKRWDAKYPGRFETAVVED   70 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES-----------S---------HHHHHHHHHHHHHHSTTTEEEEECSC
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeC-----------C---------chhHHHHHHhhhccccccccEEEecc
Confidence            68999999666 999999999999974333321           1         12344444444444444444444455


Q ss_pred             cCCc--chhhhccCCEEEecCC
Q 020259          119 IEDK--DISFYNDFNIIVLGLD  138 (328)
Q Consensus       119 ~~~~--~~~~~~~~dvVi~~~d  138 (328)
                      +.+.  -.+.+.++|.|+.+..
T Consensus        71 l~~~~~~~~~~~~~~~v~~~a~   92 (342)
T d1y1pa1          71 MLKQGAYDEVIKGAAGVAHIAS   92 (342)
T ss_dssp             TTSTTTTTTTTTTCSEEEECCC
T ss_pred             ccchhhhhhhcccchhhhhhcc
Confidence            5432  2456788998876533

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=90.45  E-value=0.12  Score=44.84  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC-eEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFK-NLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg-~itlvD~d   73 (328)
                      +||+|||+|..|..+|++|.+.|.+ +++|++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECC
Confidence            5899999999999999999998874 79999865

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.43  E-value=0.17  Score=40.56  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=32.0

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .| ...+|.|+|+|.+|.++++.|...|. ++..+|...
T Consensus        41 ~l-~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~   77 (188)
T d1sc6a1          41 EA-RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIEN   77 (188)
T ss_dssp             CS-TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cc-cceEEEEeecccchhhhhhhcccccc-eEeeccccc
Confidence            37 58999999999999999999998888 688888543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=90.23  E-value=0.42  Score=39.60  Aligned_cols=34  Identities=26%  Similarity=0.311  Sum_probs=27.6

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~   37 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATS   37 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            455666666 78999999999999998 78888754

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=90.20  E-value=0.15  Score=41.78  Aligned_cols=34  Identities=24%  Similarity=0.300  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ...|+|||+|..|...|..|++.|. +++|+|...
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~-~V~liEk~~   35 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGN   35 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            4579999999999999999999998 799998643

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=90.16  E-value=0.11  Score=41.68  Aligned_cols=35  Identities=31%  Similarity=0.390  Sum_probs=31.0

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | ...+|.|+|+|.+|.++++.|...|. ++..+|..
T Consensus        42 l-~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~   76 (188)
T d2naca1          42 L-EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRH   76 (188)
T ss_dssp             C-TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSS
T ss_pred             c-cccceeeccccccchhhhhhhhccCc-eEEEEeec
Confidence            6 58999999999999999999999898 68888754

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=90.14  E-value=0.13  Score=43.00  Aligned_cols=31  Identities=32%  Similarity=0.457  Sum_probs=28.5

Q ss_pred             EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           43 ILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        43 VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      |+|||+|-.|+.+|..|++.|. +++|+|...
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            9999999999999999999997 799998643

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.04  E-value=0.37  Score=40.25  Aligned_cols=63  Identities=19%  Similarity=0.132  Sum_probs=40.9

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPH  115 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~  115 (328)
                      | ..+.|+|.| .+|+|.++|+.|+..|. ++.+.+...                  +.+.+.+.+.+++...  ++..+
T Consensus         4 L-~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~------------------~~~~~~~~~~~~~~g~--~~~~~   61 (259)
T d1ja9a_           4 L-AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSS------------------SKAAEEVVAELKKLGA--QGVAI   61 (259)
T ss_dssp             T-TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             C-CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCC------------------hHHHHHHHHHHHHcCC--CceEe
Confidence            5 456666666 78899999999999999 566654321                  1345666666666544  34455


Q ss_pred             ecccCC
Q 020259          116 FCRIED  121 (328)
Q Consensus       116 ~~~~~~  121 (328)
                      ..++.+
T Consensus        62 ~~D~~~   67 (259)
T d1ja9a_          62 QADISK   67 (259)
T ss_dssp             ECCTTS
T ss_pred             cCCCCC
Confidence            555543

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.86  E-value=0.14  Score=40.67  Aligned_cols=35  Identities=14%  Similarity=0.062  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      +.+|+|||.|..|.+.|..|++.|. +.+++|....
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~~~~   39 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAEL-KPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CCEEECCSSB
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCC-cEEEEEeecc
Confidence            5789999999999999999999998 5667775443

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.79  E-value=0.15  Score=40.71  Aligned_cols=33  Identities=27%  Similarity=0.358  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +--|+|||+|-.|..+|..|+..|. +++|+|..
T Consensus         5 ~yDviViGaG~~Gl~~A~~La~~G~-~V~vlE~~   37 (297)
T d2bcgg1           5 DYDVIVLGTGITECILSGLLSVDGK-KVLHIDKQ   37 (297)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-CEEEEcCC
Confidence            3458999999999999999999997 79998854

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.79  E-value=0.37  Score=37.08  Aligned_cols=80  Identities=20%  Similarity=0.344  Sum_probs=46.9

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHhCC--CeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           41 ARILVVGA-GGLGCELLKDLALSGF--KNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        41 ~~VliiG~-gglG~evaknL~l~Gv--g~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      -||.|+|+ |-+|.|+++.|..-.+  .++..+.               +.+..|+.-        ....+....     
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~---------------s~~s~G~~~--------~~~~~~~~~-----   53 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLA---------------SARSAGKSL--------KFKDQDITI-----   53 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEE---------------CGGGTTCEE--------EETTEEEEE-----
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEec---------------ccccccccc--------cccCCcccc-----
Confidence            37999996 8899999999987743  4555543               223344321        111111111     


Q ss_pred             ccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          118 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                        ....+..+.+.|+++.++.+.....+..+..
T Consensus        54 --~~~~~~~~~~~d~~f~~~~~~~s~~~~~~~~   84 (154)
T d2gz1a1          54 --EETTETAFEGVDIALFSAGSSTSAKYAPYAV   84 (154)
T ss_dssp             --EECCTTTTTTCSEEEECSCHHHHHHHHHHHH
T ss_pred             --cccchhhhhhhhhhhhccCccchhhHHhhhc
Confidence              1122344568899999988766666555443

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.71  E-value=0.12  Score=43.46  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=30.1

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      || +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+
T Consensus         3 rL-~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~   39 (253)
T d1hxha_           3 RL-QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDIN   39 (253)
T ss_dssp             TT-TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            67 677777777 77999999999999998 68888743

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.56  E-value=0.17  Score=40.75  Aligned_cols=33  Identities=18%  Similarity=0.338  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      --|+|||+|..|.+.|..+++.|. +++|+|.+.
T Consensus         3 yDvvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~~   35 (217)
T d1gesa1           3 YDYIAIGGGSGGIASINRAAMYGQ-KCALIEAKE   35 (217)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC-CEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-EEEEEeccC
Confidence            458999999999999999999997 799998654

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=89.26  E-value=0.17  Score=40.71  Aligned_cols=37  Identities=19%  Similarity=0.339  Sum_probs=31.3

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ..| .+++|.|||+|.+|.++++.+...|. ++..+|..
T Consensus        43 ~~l-~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~   79 (191)
T d1gdha1          43 EKL-DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTH   79 (191)
T ss_dssp             CCC-TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSS
T ss_pred             cee-cccceEEeecccchHHHHHHHHhhcc-cccccccc
Confidence            447 58999999999999999999998888 57777743

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.09  E-value=0.15  Score=43.71  Aligned_cols=31  Identities=23%  Similarity=0.334  Sum_probs=28.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .|+|||+|-.|+-+|..|+..|. +++|+|..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~   33 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKR   33 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECC
Confidence            58999999999999999999996 79999853

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.04  E-value=0.56  Score=40.13  Aligned_cols=75  Identities=20%  Similarity=0.143  Sum_probs=48.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ++++||-|||| .|. ++..++++|.++++.+|..                    ..+..+++..++.+-.-++.....+
T Consensus        35 ~~~~VLDiGcG-~G~-lsl~aa~~Ga~~V~aid~s--------------------~~~~~a~~~~~~~~~~~~i~~~~~~   92 (311)
T d2fyta1          35 KDKVVLDVGCG-TGI-LSMFAAKAGAKKVLGVDQS--------------------EILYQAMDIIRLNKLEDTITLIKGK   92 (311)
T ss_dssp             TTCEEEEETCT-TSH-HHHHHHHTTCSEEEEEESS--------------------THHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             CcCEEEEECCC-CCH-HHHHHHHcCCCEEEEEeCH--------------------HHHHHHHHHHHHhCCCccceEEEee
Confidence            47889999999 332 5667888999999998842                    1233445555555545556666666


Q ss_pred             cCCcchhhhccCCEEEec
Q 020259          119 IEDKDISFYNDFNIIVLG  136 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~  136 (328)
                      +.+.... ...+|+|++.
T Consensus        93 ~~~l~~~-~~~~D~Ivse  109 (311)
T d2fyta1          93 IEEVHLP-VEKVDVIISE  109 (311)
T ss_dssp             TTTSCCS-CSCEEEEEEC
T ss_pred             HHHhcCc-cccceEEEEe
Confidence            5543221 2579999863

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.00  E-value=0.22  Score=40.00  Aligned_cols=32  Identities=22%  Similarity=0.330  Sum_probs=28.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +.-|+|||+|..|.+.|..+++.|. +++++|.
T Consensus         3 ~yDvvVIGgGpaGl~aA~~aa~~G~-kV~vie~   34 (221)
T d1dxla1           3 ENDVVIIGGGPGGYVAAIKAAQLGF-KTTCIEK   34 (221)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTC-CEEEEEC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-cEEEEEe
Confidence            3459999999999999999999997 6888885

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=88.99  E-value=0.6  Score=36.27  Aligned_cols=24  Identities=33%  Similarity=0.450  Sum_probs=20.5

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHh
Q 020259           39 EYARILVVGAGGLGCELLKDLALS   62 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~   62 (328)
                      ++-||.|+|+|.+|...++.|...
T Consensus         2 ~kirvgiiG~G~ig~~~~~~l~~~   25 (170)
T d1f06a1           2 TNIRVAIVGYGNLGRSVEKLIAKQ   25 (170)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTC
T ss_pred             CcceEEEECChHHHHHHHHHHHhC
Confidence            356799999999999999988753

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.92  E-value=0.2  Score=41.63  Aligned_cols=36  Identities=31%  Similarity=0.470  Sum_probs=30.3

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +| +++.++|.| .+|+|.++|+.|+..|. ++.+.|.+
T Consensus         2 ~L-~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~   38 (242)
T d1ulsa_           2 RL-KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIE   38 (242)
T ss_dssp             TT-TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            36 577788887 67899999999999998 79998854

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=88.87  E-value=0.086  Score=40.45  Aligned_cols=68  Identities=13%  Similarity=0.018  Sum_probs=36.4

Q ss_pred             EEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecccCCc
Q 020259           43 ILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRIEDK  122 (328)
Q Consensus        43 VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~~~~  122 (328)
                      |-+||+|-+|..++++|.. +.....+++          |+         ..|++.+++....    .         ...
T Consensus         2 IgfIG~G~mg~~l~~~L~~-~~~~~~v~~----------R~---------~~~~~~l~~~~~~----~---------~~~   48 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKD-RYEIGYILS----------RS---------IDRARNLAEVYGG----K---------AAT   48 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC-----CCCEEC----------SS---------HHHHHHHHHHTCC----C---------CCS
T ss_pred             EEEEeCcHHHHHHHHHHHh-CCCEEEEEe----------CC---------hhhhcchhhcccc----c---------ccc
Confidence            4689999999999999865 322222322          11         2455555443221    1         112


Q ss_pred             chhhhccCCEEEecCCCHHHH
Q 020259          123 DISFYNDFNIIVLGLDSIEAR  143 (328)
Q Consensus       123 ~~~~~~~~dvVi~~~d~~~~~  143 (328)
                      ..+..+..|+|+.|+.+....
T Consensus        49 ~~~~~~~~DiVil~v~d~~i~   69 (153)
T d2i76a2          49 LEKHPELNGVVFVIVPDRYIK   69 (153)
T ss_dssp             SCCCCC---CEEECSCTTTHH
T ss_pred             hhhhhccCcEEEEeccchhhh
Confidence            345668899999998765443

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=88.80  E-value=0.21  Score=41.50  Aligned_cols=34  Identities=35%  Similarity=0.410  Sum_probs=30.1

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      | +.++|+|-|.|.+|..+|+.|...|. +++.+|.
T Consensus        37 l-~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~   70 (230)
T d1leha1          37 L-EGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDV   70 (230)
T ss_dssp             C-TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             C-CCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecc
Confidence            6 68899999999999999999999997 6777664

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.78  E-value=0.5  Score=37.16  Aligned_cols=23  Identities=17%  Similarity=0.237  Sum_probs=20.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHh
Q 020259           40 YARILVVGAGGLGCELLKDLALS   62 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~   62 (328)
                      .-||.|.|.|.+|--+++.|...
T Consensus         2 ~irIaINGfGRIGR~v~Ral~~~   24 (172)
T d2czca2           2 KVKVGVNGYGTIGKRVAYAVTKQ   24 (172)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC
T ss_pred             cEEEEEECCCHHHHHHHHHHHhC
Confidence            56899999999999999988653

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=88.71  E-value=0.17  Score=42.30  Aligned_cols=37  Identities=27%  Similarity=0.346  Sum_probs=31.0

Q ss_pred             HHHcCCcEEEEcC-C--hHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           36 DLQEYARILVVGA-G--GLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        36 ~Lr~~~~VliiG~-g--glG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +| ++++++|.|+ |  |+|.++|+.|+..|. +|.+.+.+.
T Consensus         3 ~l-~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~   42 (268)
T d2h7ma1           3 LL-DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDR   42 (268)
T ss_dssp             TT-TTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSC
T ss_pred             CC-CCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCCh
Confidence            36 6889999995 3  599999999999997 788887654

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=88.52  E-value=0.22  Score=42.28  Aligned_cols=36  Identities=31%  Similarity=0.553  Sum_probs=30.5

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      || +++.++|.| .+|+|.++|+.|+..|. ++.++|.+
T Consensus         2 ~L-~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   38 (276)
T d1bdba_           2 KL-KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKS   38 (276)
T ss_dssp             TT-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CC-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            36 578888887 68999999999999998 79998743

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=88.47  E-value=0.21  Score=41.36  Aligned_cols=34  Identities=29%  Similarity=0.464  Sum_probs=30.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ...|+|||+|..|...|..|++.|. +++|+|...
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~   37 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGK   37 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            5679999999999999999999997 789998653

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.43  E-value=0.24  Score=35.64  Aligned_cols=33  Identities=18%  Similarity=0.140  Sum_probs=26.6

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEE
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVI   70 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlv   70 (328)
                      .. ++++|+|||.|..|..+|..|+..+- +++++
T Consensus        29 ~f-~gK~VlVVG~g~Sa~dia~~l~~~ak-~v~~~   61 (107)
T d2gv8a2          29 LF-VGESVLVVGGASSANDLVRHLTPVAK-HPIYQ   61 (107)
T ss_dssp             GG-TTCCEEEECSSHHHHHHHHHHTTTSC-SSEEE
T ss_pred             hc-CCCeEEEECCCCCHHHHHHHHHHhcC-EEEEE
Confidence            46 59999999999999999999986654 44443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.39  E-value=0.87  Score=35.40  Aligned_cols=69  Identities=13%  Similarity=0.219  Sum_probs=51.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..++++|+|.|-+|.-+|..|...|. ++++++-|.+.                         .|+...-.-++..    
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~-------------------------alqA~mdGf~v~~----   71 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPIC-------------------------AIQAVMEGFNVVT----   71 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHH-------------------------HHHHHTTTCEECC----
T ss_pred             cCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchh-------------------------hHHHHhcCCccCc----
Confidence            57899999999999999999999998 89999877742                         2333332333211    


Q ss_pred             cCCcchhhhccCCEEEecCCCHH
Q 020259          119 IEDKDISFYNDFNIIVLGLDSIE  141 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~~~  141 (328)
                          -++.++..|++|+++.+..
T Consensus        72 ----~~~a~~~aDi~vTaTGn~~   90 (163)
T d1v8ba1          72 ----LDEIVDKGDFFITCTGNVD   90 (163)
T ss_dssp             ----HHHHTTTCSEEEECCSSSS
T ss_pred             ----hhHccccCcEEEEcCCCCc
Confidence                3456678899999988754

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.26  E-value=0.6  Score=38.25  Aligned_cols=38  Identities=26%  Similarity=0.405  Sum_probs=31.1

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCcc
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVS   78 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~   78 (328)
                      .++|+|.| .+|+|.++++.|+..|. ++.++|...-++.
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~~~   40 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA   40 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccccc
Confidence            57899998 68899999999999998 7888886554433

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.26  E-value=0.44  Score=39.01  Aligned_cols=36  Identities=25%  Similarity=0.535  Sum_probs=30.8

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           40 YARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        40 ~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      +.||+|.| .+|+|.++++.|+..|. ++.++|.+.-+
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~~   38 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSAND   38 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCchh
Confidence            56899998 78999999999999998 79999876543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=88.10  E-value=0.2  Score=42.03  Aligned_cols=35  Identities=17%  Similarity=0.190  Sum_probs=30.2

Q ss_pred             HHHcCCcEEEEcC-C--hHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGA-G--GLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~-g--glG~evaknL~l~Gvg~itlvD~   72 (328)
                      +| ++++++|.|+ |  |+|.++|+.|+..|. ++.+.|.
T Consensus         2 ~L-~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r   39 (274)
T d2pd4a1           2 FL-KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYL   39 (274)
T ss_dssp             TT-TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEES
T ss_pred             cC-CCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            36 6889999996 4  799999999999998 7889884

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.06  E-value=0.26  Score=40.59  Aligned_cols=35  Identities=17%  Similarity=0.328  Sum_probs=30.7

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ++++++|.| .+|+|.++|+.|+..|. ++.+.|.+.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~   38 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNE   38 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            578889998 68999999999999998 799998664

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.05  E-value=0.5  Score=38.99  Aligned_cols=73  Identities=22%  Similarity=0.228  Sum_probs=47.7

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChH-HHHHHHHHHhhCCCcEEEE
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPK-AEVAAKRVMERVSGVNIVP  114 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~K-a~a~~~~l~~lnp~v~v~~  114 (328)
                      | ++++++|.| .+|+|.++|+.|+..|. ++.+.|.+.-...++.    .-..|+.... .+.+.+.+.+....+.+-.
T Consensus         5 l-~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~----~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLV   78 (237)
T d1uzma1           5 F-VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLF----GVEVDVTDSDAVDRAFTAVEEHQGPVEVLV   78 (237)
T ss_dssp             C-CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSE----EEECCTTCHHHHHHHHHHHHHHHSSCSEEE
T ss_pred             C-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchhcCce----EEEEecCCHHHHHHHHHHHHHhcCCceEEE
Confidence            5 677888887 66899999999999997 7999987654444332    2345665543 4455555555444444433


Q ss_pred             E
Q 020259          115 H  115 (328)
Q Consensus       115 ~  115 (328)
                      .
T Consensus        79 n   79 (237)
T d1uzma1          79 S   79 (237)
T ss_dssp             E
T ss_pred             e
Confidence            3

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=88.02  E-value=1.2  Score=34.74  Aligned_cols=32  Identities=25%  Similarity=0.212  Sum_probs=22.0

Q ss_pred             CCcEEEEcCChHHHH-HHHHHHHhCC-CeEE-EEe
Q 020259           40 YARILVVGAGGLGCE-LLKDLALSGF-KNLE-VID   71 (328)
Q Consensus        40 ~~~VliiG~gglG~e-vaknL~l~Gv-g~it-lvD   71 (328)
                      +-||.|||+|..|.. .+..+...+- -+|+ ++|
T Consensus         3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d   37 (181)
T d1zh8a1           3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTS   37 (181)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEEC
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEe
Confidence            558999999999987 4777765432 2444 444

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=87.84  E-value=0.16  Score=40.17  Aligned_cols=34  Identities=18%  Similarity=0.231  Sum_probs=29.7

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +..+|+|||.|..|.+.|..|+++|. +++|+|..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEee
Confidence            35689999999999999999999998 67888744

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.82  E-value=0.29  Score=39.14  Aligned_cols=35  Identities=26%  Similarity=0.308  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      +..|+|||+|..|.+.|..+++.|. +++|+|.+.+
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~-kV~vIEk~~~   37 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGNL   37 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCC-EEEEEecCCC
Confidence            4579999999999999999999997 7999886543

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=87.80  E-value=0.12  Score=44.62  Aligned_cols=40  Identities=18%  Similarity=0.325  Sum_probs=34.3

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHh----------CCCeEEEEeCCcc
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALS----------GFKNLEVIDMDRI   75 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~----------Gvg~itlvD~d~v   75 (328)
                      ++| ++.+|++.|+|+-|.-+++.|+.+          |.++|.++|.+=+
T Consensus        21 k~l-~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGl   70 (298)
T d1gq2a1          21 NRL-SDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGL   70 (298)
T ss_dssp             SCG-GGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEE
T ss_pred             CCH-HHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCc
Confidence            458 699999999999999999999866          5579999997654

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=87.79  E-value=1  Score=34.91  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=20.1

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHhC
Q 020259           40 YARILVVGA-GGLGCELLKDLALSG   63 (328)
Q Consensus        40 ~~~VliiG~-gglG~evaknL~l~G   63 (328)
                      .-||+|+|+ |-+|.++++.+....
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~   28 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALE   28 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC
Confidence            457999996 999999999888653

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.73  E-value=0.28  Score=40.79  Aligned_cols=35  Identities=26%  Similarity=0.433  Sum_probs=30.0

Q ss_pred             HHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | +.++++|.| .+|+|.++|+.|+..|. ++.++|.+
T Consensus         5 L-~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~   40 (244)
T d1pr9a_           5 L-AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRT   40 (244)
T ss_dssp             C-TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             C-CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC
Confidence            5 577888887 78999999999999998 78888843

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.67  E-value=0.3  Score=39.16  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=30.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      +--|+|||.|..|.+.|..+++.|- +++|+|.+.+
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~-kV~vIEk~~~   37 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGA-RAAVVESHKL   37 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC-EEEEEeccCC
Confidence            3468999999999999999999996 7999997654

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=87.46  E-value=0.22  Score=41.43  Aligned_cols=35  Identities=23%  Similarity=0.275  Sum_probs=29.2

Q ss_pred             HHHcCCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAG---GLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~g---glG~evaknL~l~Gvg~itlvD~   72 (328)
                      +| ++++|+|.|++   |+|.++|+.|+..|. ++.+.|.
T Consensus         2 ~L-~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~   39 (258)
T d1qsga_           2 FL-SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQ   39 (258)
T ss_dssp             TT-TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cC-CCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeC
Confidence            36 68888888865   699999999999998 5888774

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=87.41  E-value=0.29  Score=41.11  Aligned_cols=34  Identities=21%  Similarity=0.414  Sum_probs=30.0

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCC
Q 020259           39 EYARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d   73 (328)
                      .+..|+|||+|..|..+|..|+. .|. +++++|..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~   66 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQS   66 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCC-eEEEEecC
Confidence            47789999999999999999997 698 79999954

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.40  E-value=0.39  Score=36.86  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=28.8

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ++...+|+|.|+|++|.-++..+...|. ++.++|
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~   58 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVD   58 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCC-eEeccC
Confidence            4357899999999999999999988887 677766

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=87.40  E-value=0.1  Score=45.31  Aligned_cols=40  Identities=15%  Similarity=0.261  Sum_probs=33.7

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCC----------CeEEEEeCCcc
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGF----------KNLEVIDMDRI   75 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gv----------g~itlvD~d~v   75 (328)
                      ++| .+.+|+++|+|+-|.-+++.|+.+++          ++|.++|.+=+
T Consensus        21 k~l-~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Gl   70 (308)
T d1o0sa1          21 KLV-SQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGL   70 (308)
T ss_dssp             CCG-GGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEE
T ss_pred             CCH-HHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCC
Confidence            568 79999999999999999999987733          47999997654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.25  E-value=0.27  Score=42.19  Aligned_cols=32  Identities=38%  Similarity=0.382  Sum_probs=29.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ...|+|||+|..|-.+|+.|...|+ .++|+|.
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek   38 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGR-SVHVIET   38 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCC-CEEEEEc
Confidence            3579999999999999999999999 7899885

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.25  E-value=0.36  Score=36.83  Aligned_cols=34  Identities=15%  Similarity=0.224  Sum_probs=29.1

Q ss_pred             CCcEEEE--cCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVV--GAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~Vlii--G~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..+|+|+  |.|-+|+|+|..|+..|. ++||+....
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~   74 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH   74 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence            4566666  899999999999999997 899998654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.19  E-value=0.29  Score=40.71  Aligned_cols=34  Identities=24%  Similarity=0.328  Sum_probs=28.9

Q ss_pred             HHcCCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVGAG---GLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG~g---glG~evaknL~l~Gvg~itlvD~   72 (328)
                      | +++.++|.|++   |+|.++|+.|+..|. ++.+.|.
T Consensus         6 L-~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~   42 (256)
T d1ulua_           6 L-SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQ   42 (256)
T ss_dssp             C-TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEES
T ss_pred             C-CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            5 57889999975   799999999999998 6888764

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=86.62  E-value=0.36  Score=41.56  Aligned_cols=35  Identities=23%  Similarity=0.188  Sum_probs=29.7

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      +++||||.| .|-+|+++++.|+..|. ++..+|...
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~   42 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTA   42 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            589999999 55599999999999998 688887543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.58  E-value=1.8  Score=34.89  Aligned_cols=86  Identities=20%  Similarity=0.273  Sum_probs=52.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEeccc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCRI  119 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~~  119 (328)
                      ..+||=||||. | ..+..|+..|. +++-+|...                   .=.+.+.+++.+.++.++  ....++
T Consensus        42 ~~~iLDiGcGt-G-~~~~~l~~~~~-~v~gvD~s~-------------------~mi~~a~~~~~~~~~~i~--~~~~d~   97 (251)
T d1wzna1          42 VRRVLDLACGT-G-IPTLELAERGY-EVVGLDLHE-------------------EMLRVARRKAKERNLKIE--FLQGDV   97 (251)
T ss_dssp             CCEEEEETCTT-C-HHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTCCCE--EEESCG
T ss_pred             CCEEEEeCCCC-C-ccchhhcccce-EEEEEeecc-------------------ccccccccccccccccch--heehhh
Confidence            34699999996 4 45667889997 799888332                   124555666777666544  444554


Q ss_pred             CCcchhhhccCCEEEecCCC------HHHHHHHHHHHH
Q 020259          120 EDKDISFYNDFNIIVLGLDS------IEARSYINAVAC  151 (328)
Q Consensus       120 ~~~~~~~~~~~dvVi~~~d~------~~~~~~l~~~~~  151 (328)
                      .+.+.  -+.||+|++....      .+....+.++..
T Consensus        98 ~~l~~--~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~  133 (251)
T d1wzna1          98 LEIAF--KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAE  133 (251)
T ss_dssp             GGCCC--CSCEEEEEECSSGGGGSCHHHHHHHHHHHHH
T ss_pred             hhccc--ccccchHhhhhhhhhcCChHHHHHHHHHHHH
Confidence            44332  2579999876332      234445555553

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.46  E-value=0.12  Score=44.53  Aligned_cols=40  Identities=20%  Similarity=0.285  Sum_probs=34.3

Q ss_pred             HHHHcCCcEEEEcCChHHHHHHHHHHHhCC----------CeEEEEeCCcc
Q 020259           35 DDLQEYARILVVGAGGLGCELLKDLALSGF----------KNLEVIDMDRI   75 (328)
Q Consensus        35 ~~Lr~~~~VliiG~gglG~evaknL~l~Gv----------g~itlvD~d~v   75 (328)
                      ++| ++.+|++.|+|+-|.-+++.|+.+++          ++|.++|.+=+
T Consensus        21 k~l-~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Gl   70 (294)
T d1pj3a1          21 KPI-SEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGL   70 (294)
T ss_dssp             CCG-GGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEE
T ss_pred             CCH-HHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCC
Confidence            568 69999999999999999999887765          47999997653

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.26  E-value=3.6  Score=34.80  Aligned_cols=38  Identities=29%  Similarity=0.367  Sum_probs=29.0

Q ss_pred             HHHHHcC-CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           34 RDDLQEY-ARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        34 q~~Lr~~-~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      ++.+..+ ++|||.| .|-+|+++++.|...|. ++..+|.
T Consensus         9 ~~~~~~~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_           9 RKELPAQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             HHHHHHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             HHhCCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            3344234 4677777 88999999999999998 6777873

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.25  E-value=0.49  Score=36.91  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=26.1

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEE
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVI   70 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlv   70 (328)
                      ++.+|+|.| +|++|.-++..+...|...|.++
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~   57 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTA   57 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeee
Confidence            356788888 59999999999999998666554

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.23  E-value=0.39  Score=39.60  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=28.8

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +.+.++|.| .+|+|.++|+.|+..|. ++.++|.+
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~   38 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLP   38 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            466677777 78999999999999999 79999854

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=86.15  E-value=0.32  Score=41.13  Aligned_cols=34  Identities=29%  Similarity=0.406  Sum_probs=29.4

Q ss_pred             HHcCCcEEEEcCC---hHHHHHHHHHHHhCCCeEEEEeC
Q 020259           37 LQEYARILVVGAG---GLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        37 Lr~~~~VliiG~g---glG~evaknL~l~Gvg~itlvD~   72 (328)
                      | ++++++|.|++   |+|.++|+.|+..|. ++.+.+.
T Consensus         6 L-~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~   42 (297)
T d1d7oa_           6 L-RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTW   42 (297)
T ss_dssp             C-TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEE
T ss_pred             C-CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            5 58889999986   799999999999998 6778764

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.03  E-value=3.8  Score=30.81  Aligned_cols=80  Identities=10%  Similarity=0.027  Sum_probs=45.6

Q ss_pred             cEEEEcC-ChHHHHHHHHHHH-h--CCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEec
Q 020259           42 RILVVGA-GGLGCELLKDLAL-S--GFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFC  117 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l-~--Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~  117 (328)
                      +|.|+|+ |-+|.|++.-|.. .  -+.+++.+-...               ..|+.        +........+.    
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~---------------s~g~~--------~~~~~~~~~~~----   55 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ---------------LGQAA--------PSFGGTTGTLQ----   55 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS---------------TTSBC--------CGGGTCCCBCE----
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccc---------------ccccc--------ccccCCceeee----
Confidence            7999996 8889999976553 3  334555543322               12221        00111111110    


Q ss_pred             ccCCcchhhhccCCEEEecCCCHHHHHHHHHHH
Q 020259          118 RIEDKDISFYNDFNIIVLGLDSIEARSYINAVA  150 (328)
Q Consensus       118 ~~~~~~~~~~~~~dvVi~~~d~~~~~~~l~~~~  150 (328)
                        ...+.+.++++|+++.|+.+.....+...+.
T Consensus        56 --~~~~~~~~~~~DivF~a~~~~~s~~~~~~~~   86 (146)
T d1t4ba1          56 --DAFDLEALKALDIIVTCQGGDYTNEIYPKLR   86 (146)
T ss_dssp             --ETTCHHHHHTCSEEEECSCHHHHHHHHHHHH
T ss_pred             --cccchhhhhcCcEEEEecCchHHHHhhHHHH
Confidence              1123345689999999998877777666665

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.97  E-value=0.35  Score=40.91  Aligned_cols=30  Identities=37%  Similarity=0.478  Sum_probs=28.0

Q ss_pred             EEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           43 ILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        43 VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      |+|||+|-.|...|..|++.|. +++|+|..
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~   31 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEAR   31 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            8999999999999999999998 79999953

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=85.97  E-value=0.46  Score=36.73  Aligned_cols=30  Identities=23%  Similarity=0.346  Sum_probs=27.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .|+|||.|..|.+.|-.+++.|. +++++|.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~-~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGI-RTGLMGE   32 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCC-eEEEEEE
Confidence            58999999999999999999998 5777875

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.95  E-value=0.4  Score=38.48  Aligned_cols=32  Identities=22%  Similarity=0.389  Sum_probs=28.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +--|+|||+|..|...|..+++.|. +++|+|.
T Consensus         5 ~yDviVIG~GpAGl~aA~~aa~~G~-kV~lie~   36 (233)
T d1v59a1           5 SHDVVIIGGGPAGYVAAIKAAQLGF-NTACVEK   36 (233)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCC-cEEEEEe
Confidence            4569999999999999999999998 7888884

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.92  E-value=2.1  Score=36.73  Aligned_cols=72  Identities=13%  Similarity=0.098  Sum_probs=52.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ..++.|||+|..+-.-++.|.. ..+.+|.+++.                   ...+++..+++++..+..+.+      
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r-------------------~~e~~~~~~~~~~~~~~~~~~------  179 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDV-------------------REKAAKKFVSYCEDRGISASV------  179 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECS-------------------SHHHHHHHHHHHHHTTCCEEE------
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccC-------------------CHHHHHHHHHHHHhcCCcccc------
Confidence            4568999999999999888764 46788988752                   234778888888887544322      


Q ss_pred             cCCcchhhhccCCEEEecCCC
Q 020259          119 IEDKDISFYNDFNIIVLGLDS  139 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~~d~  139 (328)
                         ...+...++|+|++|+.+
T Consensus       180 ---~~~~a~~~aDiV~taT~s  197 (320)
T d1omoa_         180 ---QPAEEASRCDVLVTTTPS  197 (320)
T ss_dssp             ---CCHHHHTSSSEEEECCCC
T ss_pred             ---chhhhhccccEEEEeccC
Confidence               124556889999999775

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=85.67  E-value=0.4  Score=39.91  Aligned_cols=36  Identities=25%  Similarity=0.382  Sum_probs=30.2

Q ss_pred             HHHcCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +| +.+.++|.| .+|+|.++|+.|+..|. ++.+.|.+
T Consensus         2 ~l-~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~   38 (248)
T d2d1ya1           2 LF-AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLR   38 (248)
T ss_dssp             TT-TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cc-CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            35 577777777 88999999999999998 78898854

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=85.55  E-value=1.1  Score=38.79  Aligned_cols=32  Identities=22%  Similarity=0.452  Sum_probs=27.4

Q ss_pred             cEEEEcCCh-HHHHHHHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVGAGG-LGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gg-lG~evaknL~l~Gvg~itlvD~d   73 (328)
                      ||||.|++| +|+++++.|+..|...+..+|..
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~   34 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKL   34 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            699998555 99999999999999878888854

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.55  E-value=0.39  Score=40.66  Aligned_cols=36  Identities=25%  Similarity=0.394  Sum_probs=31.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      ..-|+|||.|..|..+|..|+..|. +++|+|...+.
T Consensus        16 ~~DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~~~   51 (308)
T d1y0pa2          16 TVDVVVVGSGGAGFSAAISATDSGA-KVILIEKEPVI   51 (308)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCC
Confidence            3469999999999999999999997 69999976654

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.54  E-value=2.6  Score=34.35  Aligned_cols=51  Identities=20%  Similarity=0.254  Sum_probs=36.6

Q ss_pred             EEEE-c-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEE
Q 020259           43 ILVV-G-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNI  112 (328)
Q Consensus        43 Vlii-G-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v  112 (328)
                      |.|| | .+|+|.++|+.|+..|. ++.+.|.+.                  +.+++.+++.+.+..+.-.+
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~------------------~~~~~~~~~~~~~~~~~~~~   55 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHS------------------EGAAQRLVAELNAARAGSAV   55 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHHSTTCEE
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCc------------------hHHHHHHHHHHHhhcCCceE
Confidence            4445 4 78899999999999998 888987221                  13466777777777655433

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=85.53  E-value=0.32  Score=41.59  Aligned_cols=33  Identities=27%  Similarity=0.461  Sum_probs=28.2

Q ss_pred             CcEEEEcCChHHHHHHHHHH-----HhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLA-----LSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~-----l~Gvg~itlvD~d~   74 (328)
                      .-|+|||+|..|..+|..|+     +.|+ +++|+|...
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRS   45 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCC
Confidence            45999999999999999997     5788 699998643

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=85.34  E-value=0.37  Score=41.57  Aligned_cols=33  Identities=24%  Similarity=0.702  Sum_probs=29.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +.-|+|||.|.-|+-+|+.|+.+|. ++.+++..
T Consensus         4 ~yDviIVGsG~aG~v~A~~La~~G~-kVlvLEaG   36 (379)
T d2f5va1           4 KYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIG   36 (379)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cccEEEECcCHHHHHHHHHHhhCCC-eEEEEecC
Confidence            3469999999999999999999997 78888854

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.27  E-value=0.39  Score=38.16  Aligned_cols=35  Identities=23%  Similarity=0.242  Sum_probs=29.8

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      .+ .++++.|+|+|.+|.++++-+...|. ++..+|.
T Consensus        41 ~l-~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~   75 (184)
T d1ygya1          41 EI-FGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDP   75 (184)
T ss_dssp             CC-TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECT
T ss_pred             cc-cceeeeeccccchhHHHHHHhhhccc-eEEeecC
Confidence            46 58999999999999999999998887 6777663

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=85.26  E-value=0.49  Score=39.07  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=28.8

Q ss_pred             cCCcEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVGA-GGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG~-gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +++||||.|+ |-+|+.+++.|...|. +++.++..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~   36 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRE   36 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECC
Confidence            4689999995 8999999999999997 67777643

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.25  E-value=0.52  Score=37.84  Aligned_cols=35  Identities=31%  Similarity=0.353  Sum_probs=31.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      --|+|||.|+.|-.+|..++++|-+++.|+|...+
T Consensus         4 YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           4 FDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            45899999999999999999999989999986554

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=85.20  E-value=0.34  Score=40.44  Aligned_cols=37  Identities=24%  Similarity=0.272  Sum_probs=31.4

Q ss_pred             HHHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           36 DLQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        36 ~Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .| +.++|+|-|.|.+|..+|+.|...|.+-+++-|.+
T Consensus        28 ~l-~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~   64 (242)
T d1v9la1          28 GI-EGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDIN   64 (242)
T ss_dssp             CC-TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHcCCeEEEeeccc
Confidence            36 68999999999999999999999998656666643

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=85.17  E-value=0.5  Score=40.03  Aligned_cols=30  Identities=37%  Similarity=0.549  Sum_probs=26.0

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      +||||.| .|-+|+.+++.|...|. +++.+|
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~-~V~~id   31 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGI-DLIVFD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEE
Confidence            5899998 55599999999999997 788887

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=84.93  E-value=1.9  Score=35.59  Aligned_cols=53  Identities=19%  Similarity=0.267  Sum_probs=40.1

Q ss_pred             cEEEE-c-CChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEE
Q 020259           42 RILVV-G-AGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIV  113 (328)
Q Consensus        42 ~Vlii-G-~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~  113 (328)
                      -|+|| | .+|+|.++|+.|+..|. ++.|.|..                  .+.+++.+.+.+.+.++...+.
T Consensus         3 pVAlITGas~GIG~aiA~~la~~Ga-~V~i~~~~------------------~~~~~~~~~~~l~~~~~~~~~~   57 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHR------------------SAAEANALSATLNARRPNSAIT   57 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS------------------CHHHHHHHHHHHHHHSTTCEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC------------------CHHHHHHHHHHHHhhcCCceEE
Confidence            46666 4 67999999999999998 67776621                  1357888899999888765433

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.91  E-value=0.48  Score=37.00  Aligned_cols=35  Identities=20%  Similarity=0.229  Sum_probs=32.1

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ..++|+|+|.|-+|..+|+.+...|. +++++|.|.
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCC-eeEeeeccc
Confidence            57899999999999999999999997 899999776

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.72  E-value=0.5  Score=39.06  Aligned_cols=34  Identities=29%  Similarity=0.422  Sum_probs=28.8

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +.++++|.| .+|+|.++|+.|+..|. ++.++|.+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~   38 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRT   38 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            467788888 67999999999999997 78888743

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=84.50  E-value=0.41  Score=32.58  Aligned_cols=36  Identities=22%  Similarity=0.283  Sum_probs=31.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEV   77 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~   77 (328)
                      ++|.|+|.|-+|..++..-...|+ ++.++|++.-.+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~~p   37 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAEPA   37 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSCGG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCCCc
Confidence            479999999999999999999999 788989775433

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=84.35  E-value=0.45  Score=41.30  Aligned_cols=31  Identities=19%  Similarity=0.249  Sum_probs=28.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      -|+|||.|.-|+-+|..|+.+|. ++.+++..
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~-~VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGV-QTLMLEMG   34 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcC-eEEEEecC
Confidence            48999999999999999999998 78888864

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.29  E-value=0.14  Score=45.78  Aligned_cols=53  Identities=15%  Similarity=0.128  Sum_probs=37.8

Q ss_pred             CCCCCC-CCccHHHHHHHHcCCcEEEEcCChHHHHHHHHHHH------hCCCeEEEEeCCc
Q 020259           21 NLVGPT-FEPGTELRDDLQEYARILVVGAGGLGCELLKDLAL------SGFKNLEVIDMDR   74 (328)
Q Consensus        21 ~~~rq~-~l~G~~~q~~Lr~~~~VliiG~gglG~evaknL~l------~Gvg~itlvD~d~   74 (328)
                      .|.|+. .-|-....+|...+.-|+|||+|..|+..|..|++      .|+ ++.|+|...
T Consensus        12 ~~~~~~~~~~~~~~m~~~~~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl-~VlllEK~~   71 (380)
T d2gmha1          12 IYPRDQDKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAA   71 (380)
T ss_dssp             TSCTTSCGGGSSCCCCCCEEECSEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSS
T ss_pred             ccccccCccccccCcccccccCCEEEECCCHHHHHHHHHHHhhhhhhcCCC-EEEEEcCCC
Confidence            344432 34444444454246789999999999999999998      687 788988543

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.15  E-value=1.3  Score=34.91  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=19.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHh
Q 020259           42 RILVVGAGGLGCELLKDLALS   62 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~   62 (328)
                      ||.|.|.|-+|..+++.|...
T Consensus         3 KVaINGfGRIGR~v~Ral~~~   23 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQ   23 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTC
T ss_pred             EEEEECCCHHHHHHHHHHHhC
Confidence            699999999999999999864

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.05  E-value=0.61  Score=37.04  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=29.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      .--|+|||.|+.|...|..+++.|. ++.++|...
T Consensus         3 kYDviIIGgGpAGl~aA~~aar~G~-~V~viE~~~   36 (229)
T d3lada1           3 KFDVIVIGAGPGGYVAAIKSAQLGL-KTALIEKYK   36 (229)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTC-CEEEEECCB
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence            3459999999999999999999997 688888643

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.03  E-value=0.21  Score=38.44  Aligned_cols=27  Identities=22%  Similarity=0.477  Sum_probs=24.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCe
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKN   66 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~   66 (328)
                      ..||+|||.|.+|+++|..+++.|...
T Consensus        29 gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          29 GNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            579999999999999999999999754

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=83.88  E-value=0.57  Score=37.83  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=28.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      --|+|||.|+.|...|..++++|. +++|+|..
T Consensus         7 yDviIIG~GPaGlsaA~~aa~~G~-~V~viE~~   38 (229)
T d1ojta1           7 YDVVVLGGGPGGYSAAFAAADEGL-KVAIVERY   38 (229)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            458999999999999999999998 78998853

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.69  E-value=0.16  Score=40.39  Aligned_cols=31  Identities=26%  Similarity=0.187  Sum_probs=26.1

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      -.|+|.| +||+|+..+...-..|...+..++
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~   63 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGIC   63 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceeccc
Confidence            4588888 699999999999889998777664

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.57  E-value=0.86  Score=32.98  Aligned_cols=39  Identities=21%  Similarity=0.305  Sum_probs=33.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSN   79 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~n   79 (328)
                      ..||.|+|.|-+|-.++..-...|+ ++.++|++.-.+.-
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~~PA~   49 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYADAPAM   49 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTTCGGG
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCCCchh
Confidence            4679999999999999999999999 78888987766554

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.56  E-value=0.37  Score=39.32  Aligned_cols=41  Identities=29%  Similarity=0.490  Sum_probs=33.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCccCccCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFK--NLEVIDMDRIEVSNL   80 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg--~itlvD~d~v~~~nl   80 (328)
                      ..+|.|||+||-|+.++..|.+.|+.  ++..+|.|.-.....
T Consensus        15 ~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~   57 (209)
T d2vapa1          15 KAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRT   57 (209)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTS
T ss_pred             CCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcC
Confidence            68999999999999999999999986  455668776554443

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.42  E-value=0.69  Score=37.48  Aligned_cols=33  Identities=36%  Similarity=0.582  Sum_probs=27.8

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      ++++|.| .+|+|.++|+.|+..|. ++.+.|.+.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~   35 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY-RVVVLDLRR   35 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCc
Confidence            5667777 68999999999999998 799998653

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=83.13  E-value=0.19  Score=37.54  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=27.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-hCCCeEEEEeCCc
Q 020259           40 YARILVVGAGGLGCELLKDLAL-SGFKNLEVIDMDR   74 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l-~Gvg~itlvD~d~   74 (328)
                      .-+|+|+|+|.+|..+++.|-. .|+.=+.++|+|.
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            4589999999999999987643 3555677788764

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.99  E-value=1.9  Score=37.00  Aligned_cols=75  Identities=25%  Similarity=0.233  Sum_probs=51.4

Q ss_pred             cCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEEEEEecc
Q 020259           39 EYARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNIVPHFCR  118 (328)
Q Consensus        39 ~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v~~~~~~  118 (328)
                      ++++||-||||. | .++..++++|..+++.+|..                    +.++.+++..++.+-.-+++....+
T Consensus        38 ~~~~VLDlGcGt-G-~ls~~aa~~Ga~~V~avd~s--------------------~~~~~a~~~~~~~~~~~~i~~i~~~   95 (328)
T d1g6q1_          38 KDKIVLDVGCGT-G-ILSMFAAKHGAKHVIGVDMS--------------------SIIEMAKELVELNGFSDKITLLRGK   95 (328)
T ss_dssp             TTCEEEEETCTT-S-HHHHHHHHTCCSEEEEEESS--------------------THHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             CcCEEEEeCCCC-C-HHHHHHHHhCCCEEEEEeCC--------------------HHHHHHHHHHHHhCccccceEEEee
Confidence            689999999994 3 34567788999999998842                    2355566666766666667777666


Q ss_pred             cCCcchhhhccCCEEEec
Q 020259          119 IEDKDISFYNDFNIIVLG  136 (328)
Q Consensus       119 ~~~~~~~~~~~~dvVi~~  136 (328)
                      +.+.... -..+|+|+..
T Consensus        96 ~~~l~~~-~~~~D~i~se  112 (328)
T d1g6q1_          96 LEDVHLP-FPKVDIIISE  112 (328)
T ss_dssp             TTTSCCS-SSCEEEEEEC
T ss_pred             hhhccCc-ccceeEEEEE
Confidence            6543211 1468988764

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.96  E-value=0.64  Score=39.94  Aligned_cols=33  Identities=33%  Similarity=0.477  Sum_probs=28.5

Q ss_pred             cCCcEEEEc-CChHHHHHHHHHHHhCCCeEEEEeC
Q 020259           39 EYARILVVG-AGGLGCELLKDLALSGFKNLEVIDM   72 (328)
Q Consensus        39 ~~~~VliiG-~gglG~evaknL~l~Gvg~itlvD~   72 (328)
                      +++||||.| .|=+|+++++.|...|. .++.+|.
T Consensus         1 M~kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~   34 (346)
T d1ek6a_           1 MAEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            357999998 78899999999999996 7888874

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.95  E-value=0.64  Score=37.79  Aligned_cols=34  Identities=35%  Similarity=0.438  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFK--NLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg--~itlvD~d~   74 (328)
                      ++|+|||.|+.|-..|...+++|.+  +++++|.+.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            5799999999999999999999985  678888654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=82.94  E-value=0.61  Score=35.98  Aligned_cols=34  Identities=26%  Similarity=0.257  Sum_probs=28.2

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEe
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      ++...+|+|+|+|++|.-.+..+...|...+ ++|
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i-~~~   61 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVV-AFT   61 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEE-EEE
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccccch-hhc
Confidence            3356789999999999999999999998655 566

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.94  E-value=0.72  Score=37.09  Aligned_cols=36  Identities=11%  Similarity=0.193  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCC-CeEEEEeCCcc
Q 020259           40 YARILVVGAGGLGCELLKDLALSGF-KNLEVIDMDRI   75 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gv-g~itlvD~d~v   75 (328)
                      ..+++|||.|..|.++|..|...|. ++|++++.+..
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~   40 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPE   40 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCC
Confidence            3468999999999999999998887 48999986543

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=82.89  E-value=2.9  Score=35.13  Aligned_cols=32  Identities=31%  Similarity=0.586  Sum_probs=25.4

Q ss_pred             cEEEEc-CChHHHHHHHHHHHhCC-----CeEEEEeCC
Q 020259           42 RILVVG-AGGLGCELLKDLALSGF-----KNLEVIDMD   73 (328)
Q Consensus        42 ~VliiG-~gglG~evaknL~l~Gv-----g~itlvD~d   73 (328)
                      ||+|.| .|-+|+++++.|...|.     .++..+|.-
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~   39 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSL   39 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCC
Confidence            699998 77899999999999775     356666643

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=82.51  E-value=0.69  Score=38.20  Aligned_cols=33  Identities=18%  Similarity=0.414  Sum_probs=29.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCcc
Q 020259           42 RILVVGAGGLGCELLKDLALSGFKNLEVIDMDRI   75 (328)
Q Consensus        42 ~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v   75 (328)
                      -|+|||+|..|...|..+++.|. ++.|+|.+.+
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~-~V~liE~~~~   35 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNA-KVALVEKSRL   35 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEEESSST
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence            48999999999999999999998 7999997654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.43  E-value=0.64  Score=39.80  Aligned_cols=36  Identities=25%  Similarity=0.273  Sum_probs=32.0

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      | +.++|+|-|.|-+|..+|+.|...|.+-+++-|.+
T Consensus        34 L-~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~   69 (293)
T d1hwxa1          34 F-GDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESD   69 (293)
T ss_dssp             S-TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             C-CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccc
Confidence            5 57899999999999999999999998777777765

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=82.35  E-value=1.3  Score=36.21  Aligned_cols=54  Identities=30%  Similarity=0.409  Sum_probs=37.4

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHhCCCeEEEEeCCccCccCCccccCCCCCCCCChHHHHHHHHHHhhCCCcEE
Q 020259           42 RILVVGA-GGLGCELLKDLALSGFKNLEVIDMDRIEVSNLNRQFLFRMEDVGKPKAEVAAKRVMERVSGVNI  112 (328)
Q Consensus        42 ~VliiG~-gglG~evaknL~l~Gvg~itlvD~d~v~~~nl~r~~l~~~~diG~~Ka~a~~~~l~~lnp~v~v  112 (328)
                      ||+|.|+ |-+|+++++.|...|. ++..+|...+              |+..  .+.+.+.++...|++-+
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~~--------------D~~d--~~~~~~~l~~~~~d~vi   57 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQDL--------------DITN--VLAVNKFFNEKKPNVVI   57 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTTC--------------CTTC--HHHHHHHHHHHCCSEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEeechhc--------------cCCC--HHHHHHHHHHcCCCEEE
Confidence            5999996 9999999999999887 6777764432              2222  23455666666666533

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.23  E-value=0.68  Score=37.29  Aligned_cols=39  Identities=26%  Similarity=0.396  Sum_probs=32.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCC--eEEEEeCCccCccC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFK--NLEVIDMDRIEVSN   79 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg--~itlvD~d~v~~~n   79 (328)
                      +.|.|||.||.|+.++..|.+.|+.  ++..+|.|.-..++
T Consensus         2 a~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~~   42 (198)
T d1ofua1           2 AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKN   42 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSS
T ss_pred             ceEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHhc
Confidence            6799999999999999999999986  56666777655544

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=82.13  E-value=0.58  Score=40.65  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=28.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      .-|+|||.|.-|+.+|..|+.+|. ++++++..
T Consensus         8 ~dvIVVGsG~aG~v~A~rLaeaG~-~VlvLEaG   39 (370)
T d3coxa1           8 VPALVIGSGYGGAVAALRLTQAGI-PTQIVEMG   39 (370)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            458999999999999999999997 78898853

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.09  E-value=3.6  Score=34.89  Aligned_cols=30  Identities=33%  Similarity=0.554  Sum_probs=25.0

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHhCCCeEEEEe
Q 020259           41 ARILVVG-AGGLGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        41 ~~VliiG-~gglG~evaknL~l~Gvg~itlvD   71 (328)
                      +-|||.| .|=+|+++++.|...|. +++.+|
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d   32 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVAD   32 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEE
Confidence            3466777 78899999999999996 688887

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.01  E-value=0.55  Score=37.90  Aligned_cols=33  Identities=21%  Similarity=0.311  Sum_probs=28.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCc
Q 020259           41 ARILVVGAGGLGCELLKDLALSGFKNLEVIDMDR   74 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~   74 (328)
                      --|+|||+|+.|-..|..+++.|. ++.|+|...
T Consensus         4 YDviVIG~GpaGl~aA~~aa~~G~-kV~viE~~~   36 (235)
T d1h6va1           4 FDLIIIGGGSGGLAAAKEAAKFDK-KVMVLDFVT   36 (235)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGCC-CEEEECCCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            358999999999999999999998 688887443

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=81.97  E-value=0.61  Score=38.73  Aligned_cols=29  Identities=34%  Similarity=0.727  Sum_probs=25.4

Q ss_pred             EEEEcCCh-HHHHHHHHHHHhCCCeEEEEe
Q 020259           43 ILVVGAGG-LGCELLKDLALSGFKNLEVID   71 (328)
Q Consensus        43 VliiG~gg-lG~evaknL~l~Gvg~itlvD   71 (328)
                      |||.|+.| +|+.+++.|+..|...++.+|
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            78888555 999999999999988899987

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=81.32  E-value=0.82  Score=37.42  Aligned_cols=30  Identities=33%  Similarity=0.542  Sum_probs=24.9

Q ss_pred             EEEEc-CChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           43 ILVVG-AGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        43 VliiG-~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      |+|.| .+|+|.++|+.|+..|. ++.++|..
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga-~V~~~~~~   34 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGH-QIVGIDIR   34 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            45556 78999999999999998 68888854

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=81.03  E-value=0.7  Score=36.92  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=29.2

Q ss_pred             HHcCCcEEEEcCChHHHHHHHHHHHhCCCeEEEE
Q 020259           37 LQEYARILVVGAGGLGCELLKDLALSGFKNLEVI   70 (328)
Q Consensus        37 Lr~~~~VliiG~gglG~evaknL~l~Gvg~itlv   70 (328)
                      + +.++|+|||+|..|..+|..|+..+.+..++.
T Consensus        30 ~-~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~   62 (235)
T d1w4xa2          30 F-SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQ   62 (235)
T ss_dssp             C-BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEE
T ss_pred             C-CCCEEEEECCCccHHHHHHHHHhhhccccccc
Confidence            5 58999999999999999999999998666654

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=80.82  E-value=0.76  Score=36.57  Aligned_cols=34  Identities=24%  Similarity=0.228  Sum_probs=28.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMD   73 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d   73 (328)
                      +.+++|+|+||.|-+++..+-..|...+.++|+.
T Consensus         2 ~kkl~i~Gagg~~~~v~di~~~~~~~~~~f~dd~   35 (193)
T d3bswa1           2 TEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDF   35 (193)
T ss_dssp             CSEEEEEC--CHHHHHHHHHHHHTCCEEEECCCC
T ss_pred             CCEEEEEcCCHhHHHHHHHHHhCCCcEEEEEcCC
Confidence            7899999999999999999999999888888753

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=80.80  E-value=0.73  Score=39.23  Aligned_cols=39  Identities=23%  Similarity=0.334  Sum_probs=33.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccCccC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIEVSN   79 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~~~n   79 (328)
                      ..-|+|||.|..|...|..+++.|. +++|++...+...+
T Consensus         5 ~~DVvVIG~G~AGl~AAl~aa~~G~-~V~liEK~~~~~g~   43 (336)
T d2bs2a2           5 YCDSLVIGGGLAGLRAAVATQQKGL-STIVLSLIPVKRSH   43 (336)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTC-CEEEECSSCGGGSG
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCC-CEEEEecCCCCCCc
Confidence            4569999999999999999999998 69999987765443

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=80.41  E-value=0.71  Score=39.29  Aligned_cols=36  Identities=17%  Similarity=0.385  Sum_probs=31.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHhCCCeEEEEeCCccC
Q 020259           40 YARILVVGAGGLGCELLKDLALSGFKNLEVIDMDRIE   76 (328)
Q Consensus        40 ~~~VliiG~gglG~evaknL~l~Gvg~itlvD~d~v~   76 (328)
                      ..-|+|||.|..|...|..|+..|. +++|++.....
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~-~V~llEk~~~~   58 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGA-KVILLEKEPIP   58 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTC-CEEEECSSSSS
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCC
Confidence            4579999999999999999999998 69999876543

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=80.39  E-value=1.6  Score=34.02  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=19.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHhC
Q 020259           41 ARILVVGAGGLGCELLKDLALSG   63 (328)
Q Consensus        41 ~~VliiG~gglG~evaknL~l~G   63 (328)
                      .+|.|-|.|.+|-.+++.|...+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~   24 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQD   24 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSS
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCC
Confidence            37999999999999999886554