Citrus Sinensis ID: 020274

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MTNFVLKNSYLHGFSTFVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPVE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccEEEEHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHcHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccccccccccHHHHHccHHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccHEcccccccccHHHHHHHcccHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mtnfvlknsylhgfstfvplpapnsilfgtstSKVLVssrqgsvglsvtdkQLIKVRFCAVESKQEALLQTQmgewedpddgsgseydddddddeegevkendldfesdweeersgigaaasgdaaTTISKYEEDLLKEVEQLLEPEereilnqnatpnlgkistakwrplqtLTLSMQIRYMDMLLdggldidsvdkDGLTALHKAIIGKKEAVISHLLrkganphvkdgdgatplHYAVQVGAMQSVKLLIKYNVDvnvadnegwtplHIAIQSRNRDIAKVLLIngadksrktkdgktALDMslcygrdfksYDLAKLLKILPVE
Flexible Loop (DISEMBL)
MTNFVLKNSYLHGFSTFVPLPAPNSILFGTSTSKVLVSsrqgsvglsvtdkqLIKVRFCAVESKQEALLQtqmgewedpddgsGSEYDDDDDDDEEGevkendldfesdwEEERSgigaaasgdaaTTISKYEEDLLKEVEQLLEPeereilnqnatpnlgkistakwrplQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLingadksrktkdgktaldmslcygrdfksydLAKLLKILPVE
Low Complexity Region (SEG)
MTNFVLKNSYLHGFSTFVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQMGEWedpddgsgseydddddddeegeVKENDLDFESDWEEERsgigaaasgdaattisKYEEDllkeveqllepeereilNQNATPNLGKISTAKWRPLQTLTLSMQIRYmdmlldggldIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPVE
Disordered region (IsUnstruct)
***FVLKNSYLHGFSTFVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVES***********************************************************************************************NLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA**********TALDMSLCYGRDFKSYDLAKLLKIL***
Disordered Region (DISOPRED)
**N****NSYLHGFSTFVPLPAPNSILFGTSTSKVLVSSRQ******VTDKQLIKVRFCAVESKQEALLQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV*
Disordered Region (DISEMBL)
MTNFVLKNSYLHGFSTFVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQMGE*************************ENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPVE
Disordered Region (DISPRO)
MTNFVLKNSYLHGFSTFVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNFVLKNSYLHGFSTFVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	328	2.2.26 [Sep-21-2011]
Q9SQK3	315	Ankyrin repeat domain-con	yes	no	0.896	0.933	0.608	3e-97
Q05753	435	Ankyrin repeat domain-con	no	no	0.567	0.427	0.481	1e-45
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.432	0.120	0.363	9e-18
Q54HW1	232	26S proteasome non-ATPase	yes	no	0.420	0.594	0.359	2e-17
P16157	1881	Ankyrin-1 OS=Homo sapiens	yes	no	0.469	0.081	0.320	2e-16
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.371	0.030	0.365	3e-16
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	yes	no	0.371	0.031	0.365	3e-16
Q8BZ25	745	Ankyrin repeat and protei	yes	no	0.426	0.187	0.330	6e-16
Q07E28	1658	Cortactin-binding protein	N/A	no	0.457	0.090	0.356	8e-16
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.484	0.081	0.293	8e-16

>sp|Q9SQK3|EM506_ARATH Ankyrin repeat domain-containing protein EMB506, chloroplastic OS=Arabidopsis thaliana GN=EMB506 PE=1 SV=1

 Score =  355 bits (910), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 188/309 (60%), Positives = 226/309 (73%), Gaps = 15/309 (4%)

Query: 20  LPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQMGEWEDP 79
           LP  +S+   +     L +S +GS   SV  +   + R     +++   +Q++   WEDP
Sbjct: 18  LPISDSVNCKSKIVYCLSTSVRGS---SVKRQSTARTRSFTETNRRTPSVQSKHEFWEDP 74

Query: 80  DDGSGSEYDDDDDD-DEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLK 138
           DDGS SE + + ++ D  G    NDLD ESDWE++       +     TT   YEE+L K
Sbjct: 75  DDGSDSENEYEGEEEDGIG----NDLDNESDWEDD-------SRVQKLTTTDNYEEELAK 123

Query: 139 EVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDK 198
           EVEQLLEPEER IL QN  PNL  IST  W+PLQTL LSMQI+ MD L++ GLDID VDK
Sbjct: 124 EVEQLLEPEERVILQQNEKPNLKMISTKSWKPLQTLALSMQIQLMDNLIENGLDIDDVDK 183

Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
           D  TALHKAIIGKKEAVISHLLRKGANPH++D DGA P+HYAVQVGA+Q+VKLL KYNVD
Sbjct: 184 DNQTALHKAIIGKKEAVISHLLRKGANPHLQDRDGAAPIHYAVQVGALQTVKLLFKYNVD 243

Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDL 318
           VNVADNEGWTPLHIA+QSRNRDI K+LL NGADK+R+TKDGK ALD++LC+GRDFKSYDL
Sbjct: 244 VNVADNEGWTPLHIAVQSRNRDITKILLTNGADKTRRTKDGKLALDLALCFGRDFKSYDL 303

Query: 319 AKLLKILPV 327
            KLLKI+P 
Sbjct: 304 VKLLKIMPT 312

Involved in the initial differentiation of the proplastid during the embryo development. Also required for correct cotyledon, true leaf and cauline leaf margin development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q05753|AKRP_ARATH Ankyrin repeat domain-containing protein, chloroplastic OS=Arabidopsis thaliana GN=AKRP PE=1 SV=2

 Score =  183 bits (465), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 90/187 (48%), Positives = 125/187 (66%), Gaps = 1/187 (0%)

Query: 141 EQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDG 200
            +LL  EE+ +LN    P+L   ++ KW PL TL    +   +D LL   LDI++ D  G
Sbjct: 235 RKLLSKEEKFMLNSR-NPDLAVATSKKWLPLHTLAACGEFYLVDSLLKHNLDINATDVGG 293

Query: 201 LTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVN 260
           LT LH+AIIGKK+A+ ++LLR+ ANP V D +GAT +HYAVQ  +  ++KLL+ YN D+N
Sbjct: 294 LTVLHRAIIGKKQAITNYLLRESANPFVLDDEGATLMHYAVQTASAPTIKLLLLYNADIN 353

Query: 261 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 320
             D +GWTPLH+A+Q+R  DI K+LLI GAD   K KDG T L + L  GR+ ++Y++ K
Sbjct: 354 AQDRDGWTPLHVAVQARRSDIVKLLLIKGADIEVKNKDGLTPLGLCLYLGREIRTYEVMK 413

Query: 321 LLKILPV 327
           LLK  P+
Sbjct: 414 LLKEFPL 420

Involved in the initial differentiation of the proplastid during the embryo development and in plastid differentiation linked to cell differentiation, morphogenesis and organogenesis during the plant life cycle.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score = 91.3 bits (225), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 4/146 (2%)

Query: 177  SMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATP 236
            S  +  + +L+  G DI++   DGLTALH A+      ++S L+ KG + + K   G T 
Sbjct: 974  SGNLNLVSLLIHNGTDINTKTDDGLTALHYAVESGNLNLVSLLIHKGIDVNAKTNSGETI 1033

Query: 237  LHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT 296
            LH+AV +G++  V LL+    DVN   ++G T LH A++S N  +  +L++ GAD + K 
Sbjct: 1034 LHFAVDLGSLDLVSLLMVRGADVNAKTDDGLTALHYAVESDNLALVSLLMVYGADVNAKN 1093

Query: 297  KDGKTALDMSLCYGRDFKSYDLAKLL 322
              G+T L     Y   F S DL  LL
Sbjct: 1094 NSGETPLH----YAVIFNSLDLVSLL 1115

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|Q54HW1|PSD10_DICDI 26S proteasome non-ATPase regulatory subunit 10 OS=Dictyostelium discoideum GN=psmD10 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 1/139 (0%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPH 227
           W PL + T +     + +LL+ G D ++V+    T LH A    +  ++  LL  GA  +
Sbjct: 81  WTPLTSATSAGHTHMVKLLLEFGADPNTVNDSKRTPLHYASSKGRSDIVDLLLTHGAK-N 139

Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI 287
            KD  G+ P+H A   G++ +V+ L+K   ++N  +NEG TPLHIA +  + D+ + LL 
Sbjct: 140 RKDDTGSAPIHRASSNGSVATVERLLKGEANINSTNNEGDTPLHIAAEYNHEDVVECLLK 199

Query: 288 NGADKSRKTKDGKTALDMS 306
           +GAD + + KD KT +DMS
Sbjct: 200 HGADTTIENKDSKTPIDMS 218

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the 19S regulatory complex (RC).

Dictyostelium discoideum (taxid: 44689)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 2/156 (1%)

Query: 151 ILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIG 210
           +L++ A PN   ++   + PL        +R M++LL  G  ID+V + GLT LH A   
Sbjct: 357 LLDKGAKPNSRALN--GFTPLHIACKKNHVRVMELLLKTGASIDAVTESGLTPLHVASFM 414

Query: 211 KKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPL 270
               ++ +LL++GA+P+V +    TPLH A + G  +  K L++    VN    +  TPL
Sbjct: 415 GHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL 474

Query: 271 HIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
           H A +  + ++ K+LL N A+ +  T  G T L ++
Sbjct: 475 HCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIA 510

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 73/126 (57%)

Query: 187 LDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAM 246
           L GG+DI++ +++GL ALH A       ++  LL +G++       G T LH A   G  
Sbjct: 51  LKGGIDINTCNQNGLNALHLAAKEGHVGLVQELLGRGSSVDSATKKGNTALHIASLAGQA 110

Query: 247 QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
           + VK+L+K   ++N     G+TPL++A Q  + D+ K LL NGA++S  T+DG T L ++
Sbjct: 111 EVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVKYLLENGANQSTATEDGFTPLAVA 170

Query: 307 LCYGRD 312
           L  G +
Sbjct: 171 LQQGHN 176

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 73/126 (57%)

Query: 187 LDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAM 246
           L GG+DI++ +++GL ALH A       ++  LL +G++       G T LH A   G  
Sbjct: 51  LKGGIDINTCNQNGLNALHLAAKEGHVGLVQELLGRGSSVDSATKKGNTALHIASLAGQA 110

Query: 247 QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
           + VK+L+K   ++N     G+TPL++A Q  + D+ K LL NGA++S  T+DG T L ++
Sbjct: 111 EVVKVLVKEGANINAQSQNGFTPLYMAAQENHIDVVKYLLENGANQSTATEDGFTPLAVA 170

Query: 307 LCYGRD 312
           L  G +
Sbjct: 171 LQQGHN 176

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|Q8BZ25|ANKK1_MOUSE Ankyrin repeat and protein kinase domain-containing protein 1 OS=Mus musculus GN=Ankk1 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 77/142 (54%)

Query: 170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVK 229
           PL  L     +  + +LL   +D+D     G T L  A   ++  + + LL  GA+ ++ 
Sbjct: 373 PLHFLVAGGSLEQVRLLLSHDVDVDCQTASGYTPLLIATQDQQPDLCALLLAHGADTNLA 432

Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 289
           D DG  PLH+A Q G   + +LL+ +   VN  ++EGWTPLH+A Q+   ++A++L+   
Sbjct: 433 DEDGWAPLHFAAQNGDDHTARLLLDHGALVNAREHEGWTPLHLAAQNNFENVARLLVSRQ 492

Query: 290 ADKSRKTKDGKTALDMSLCYGR 311
           AD S    +GKT L ++  +G 
Sbjct: 493 ADLSPHEAEGKTPLHVAAYFGH 514

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q07E28|CTTB2_NEONE Cortactin-binding protein 2 OS=Neofelis nebulosa GN=CTTNBP2 PE=3 SV=1

 Score = 84.7 bits (208), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 7/157 (4%)

Query: 169 RP--LQTLTLSMQIRYMDMLLDG-GLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGAN 225
           RP  LQ       +  + MLL+  GLDI+   +DG +AL+ A        +  LL  GA 
Sbjct: 707 RPTLLQQAATQGNVTLLSMLLNEEGLDINYSCEDGHSALYSAAKNGHTDCVRLLLNAGAQ 766

Query: 226 PHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
            +  D +G TPL  A   G  + V+LLI Y+ ++N A +EG TPL++A ++ N++  ++L
Sbjct: 767 VNAADTNGFTPLCAAAAQGHFKCVELLISYDANINHAADEGQTPLYLACKNGNKECIQLL 826

Query: 286 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           L  G D+S KT+DG T +  ++    D  + D  KLL
Sbjct: 827 LEAGTDRSVKTRDGWTPVHAAV----DTGNVDSLKLL 859

Neofelis nebulosa (taxid: 61452)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 84.7 bits (208), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 35/194 (18%)

Query: 151 ILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIG 210
           +L++ A+PN   ++   + PL       +IR M++LL  G  I +V + GLT +H A   
Sbjct: 369 LLDKKASPNAKALN--GFTPLHIACKKNRIRVMELLLKHGASIQAVTESGLTPIHVAAFM 426

Query: 211 KKEAVISHLLRKGANPH-------------------------VKDG--------DGATPL 237
               ++S L+  GA+P+                         V+DG        D  TPL
Sbjct: 427 GHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPL 486

Query: 238 HYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK 297
           H + ++G    V+ L++     N A   G+TPLH+A +  + D+A  LL +GA  S  TK
Sbjct: 487 HISARLGKADIVQQLLQQGASPNAATTSGYTPLHLAAREGHEDVAAFLLDHGASLSITTK 546

Query: 298 DGKTALDMSLCYGR 311
            G T L ++  YG+
Sbjct: 547 KGFTPLHVAAKYGK 560

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
255552692	343	aberrant large forked product, putative	0.914	0.874	0.600	1e-103
225452545	322	PREDICTED: ankyrin repeat domain-contain	0.820	0.835	0.72	1e-102
224060757	255	predicted protein [Populus trichocarpa]	0.777	1.0	0.725	1e-100
449492678	319	PREDICTED: ankyrin repeat domain-contain	0.923	0.949	0.598	1e-100
449449192	319	PREDICTED: ankyrin repeat domain-contain	0.923	0.949	0.595	1e-99
296087710	232	unnamed protein product [Vitis vinifera]	0.692	0.978	0.763	1e-95
15242597	315	ankyrin repeat domain-containing protein	0.896	0.933	0.608	2e-95
224097124	226	predicted protein [Populus trichocarpa]	0.685	0.995	0.737	5e-93
124359844	317	Ankyrin [Medicago truncatula]	0.887	0.917	0.575	1e-90
356537833	391	PREDICTED: ankyrin repeat domain-contain	0.966	0.810	0.590	2e-90

>gi|255552692|ref|XP_002517389.1| aberrant large forked product, putative [Ricinus communis] gi|223543400|gb|EEF44931.1| aberrant large forked product, putative [Ricinus communis]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/333 (60%), Positives = 234/333 (70%), Gaps = 33/333 (9%)

Query: 20  LPAPN-SILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQMGEWED 78
           LP P  +   GTST   L  +  GS    + +K   K+  C VESK     +   G WED
Sbjct: 13  LPLPRFAATPGTSTGTNLFKASTGSFDFLLANK-CRKLTTCRVESKWAYPSERLPGVWED 71

Query: 79  PDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAAT----------- 127
           PDDGSGS+YD      E  E++END+D+ESDWEEE          D +T           
Sbjct: 72  PDDGSGSDYD------EVEELEENDMDYESDWEEETYAKSTTRIVDYSTSNNYEEDSEEA 125

Query: 128 --------------TISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQT 173
                         T   YEEDL KE+ QLL+PEER IL QNAT NL K+STAKW+PLQT
Sbjct: 126 TYVASTSTTTVRNSTSKNYEEDLSKEIIQLLQPEERAILQQNATYNLDKLSTAKWKPLQT 185

Query: 174 LTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDG 233
           L LS QIR+MD LL  GLDIDSVDKDGLTALHKAI+GKKEAVISHLLRKGANPHVKD DG
Sbjct: 186 LALSGQIRFMDKLLADGLDIDSVDKDGLTALHKAIVGKKEAVISHLLRKGANPHVKDRDG 245

Query: 234 ATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS 293
           A+ LHYAVQ+GA+Q+VKLLIKYNVD+NVADNEGWTPLH+A+Q+R RDI KVLL+NGADK+
Sbjct: 246 ASSLHYAVQIGALQTVKLLIKYNVDINVADNEGWTPLHVAVQTRKRDIVKVLLVNGADKN 305

Query: 294 RKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP 326
           RK KDG T +D+ LCYG+DFKSYDLAKL+K++P
Sbjct: 306 RKNKDGMTPVDLCLCYGKDFKSYDLAKLVKVVP 338

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452545|ref|XP_002275234.1| PREDICTED: ankyrin repeat domain-containing protein EMB506, chloroplastic [Vitis vinifera] gi|147786877|emb|CAN75542.1| hypothetical protein VITISV_022633 [Vitis vinifera]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/275 (72%), Positives = 226/275 (82%), Gaps = 6/275 (2%)

Query: 52  QLIKVRFCAVESKQEALLQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWE 111
           + +KVR CAV+  + + LQ +   WEDPDDGSGSEYDD     E+ E++E DLDFESDWE
Sbjct: 49  ECLKVRICAVDRNRVSSLQPRTRAWEDPDDGSGSEYDD-----EDEEMEEYDLDFESDWE 103

Query: 112 EERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPL 171
           EE+    A  +G   +T  KYE DL+KEV QLL PEER+IL QNA PNL KISTAKW PL
Sbjct: 104 EEKDA-SATVTGVNKSTARKYEADLVKEVVQLLGPEERQILQQNAAPNLEKISTAKWSPL 162

Query: 172 QTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDG 231
            TL LS QI  MD LL  GLDID+VDKDGLTALH+AIIGKKEAVISHLLRKGANPHV+D 
Sbjct: 163 HTLALSGQIHSMDKLLANGLDIDNVDKDGLTALHRAIIGKKEAVISHLLRKGANPHVRDR 222

Query: 232 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 291
           DGATPLHYAVQVGAMQ+VKLLIKYNVD+N ADNEGWTPLHIAIQSRNR IAK LL+NGAD
Sbjct: 223 DGATPLHYAVQVGAMQTVKLLIKYNVDINAADNEGWTPLHIAIQSRNRIIAKRLLVNGAD 282

Query: 292 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP 326
           K+R+ +DGKT LD+SLCYG+DFKSY+LAKLLK++P
Sbjct: 283 KTRRNQDGKTPLDLSLCYGKDFKSYELAKLLKLVP 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224060757|ref|XP_002300264.1| predicted protein [Populus trichocarpa] gi|222847522|gb|EEE85069.1| predicted protein [Populus trichocarpa]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/259 (72%), Positives = 221/259 (85%), Gaps = 4/259 (1%)

Query: 69  LQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATT 128
           L+T+ G WEDPDDGSGS+YD +D    E E KENDLDF+S+WEEE++ + A ++   +TT
Sbjct: 1   LETKHGVWEDPDDGSGSDYDQED----EEEAKENDLDFDSNWEEEKNSVTATSTVTNSTT 56

Query: 129 ISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLD 188
            + Y EDL+KEVEQLL PEER I  QNA+PNL KISTAKW PLQTL LS QI++MD LLD
Sbjct: 57  ENNYGEDLVKEVEQLLGPEERAIFQQNASPNLRKISTAKWNPLQTLALSGQIKFMDKLLD 116

Query: 189 GGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQS 248
            GLDID  D DG TALHKAIIGKKEAVISHLLRKGA+PH++D DGA+PLHYAVQVGAMQ+
Sbjct: 117 DGLDIDDQDNDGFTALHKAIIGKKEAVISHLLRKGASPHIRDRDGASPLHYAVQVGAMQT 176

Query: 249 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLC 308
           VKLL+KY VDVN ADNEGWTPLHIA+QSRNRDIAKVLL+NGADK+R+TKDG T LD+SLC
Sbjct: 177 VKLLLKYEVDVNAADNEGWTPLHIAVQSRNRDIAKVLLVNGADKTRRTKDGMTPLDLSLC 236

Query: 309 YGRDFKSYDLAKLLKILPV 327
           +G+DFKS+D+AKLLK+LP 
Sbjct: 237 FGKDFKSFDIAKLLKVLPT 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492678|ref|XP_004159069.1| PREDICTED: ankyrin repeat domain-containing protein EMB506, chloroplastic-like [Cucumis sativus]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/324 (59%), Positives = 238/324 (73%), Gaps = 21/324 (6%)

Query: 13  GFSTFVPLPAPNSILFGTSTSKVL---------VSSRQGSVGLSVTDKQLIKVRFCAVES 63
             STFVP  AP   +  T++S +L         V  R+  + LS++ K+ ++VR    +S
Sbjct: 4   AMSTFVPFEAPPVYVVATASSPLLGCTINCLDVVGPRRTELQLSLS-KKWLRVRTFVTKS 62

Query: 64  KQEALLQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASG 123
            Q +  Q++   WEDPDDGSGSE D++DD          DLDFESDWE E + + A +  
Sbjct: 63  NQVSFSQSRQETWEDPDDGSGSESDEEDD---------YDLDFESDWEGEEN-VQAVSII 112

Query: 124 DAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYM 183
           D     +KYEEDL KEVEQLLEPEER IL QNAT N+ K+ST KW PL T  LS QI  M
Sbjct: 113 DQPAA-NKYEEDLQKEVEQLLEPEERAILEQNATLNVEKLSTPKWNPLHTFALSGQIIPM 171

Query: 184 DMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           D LLD G DIDSVD+DG +ALHKAIIG+K+AVI HLLRKGA+PH+KD +GATPLHYAVQV
Sbjct: 172 DKLLDSGFDIDSVDEDGFSALHKAIIGRKDAVIGHLLRKGASPHIKDKNGATPLHYAVQV 231

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
           GA Q VKLLIKY VDVNVAD++GWT LHIAIQ RNRDI K+LL+NGAD++R+ KDGKTAL
Sbjct: 232 GAKQIVKLLIKYKVDVNVADSDGWTALHIAIQGRNRDITKILLVNGADRNRRNKDGKTAL 291

Query: 304 DMSLCYGRDFKSYDLAKLLKILPV 327
           D+SLCYG++FKSYDL+KLLK++P+
Sbjct: 292 DLSLCYGKNFKSYDLSKLLKVVPL 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449192|ref|XP_004142349.1| PREDICTED: ankyrin repeat domain-containing protein EMB506, chloroplastic-like [Cucumis sativus]

 Score =  369 bits (947), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 193/324 (59%), Positives = 237/324 (73%), Gaps = 21/324 (6%)

Query: 13  GFSTFVPLPAPNSILFGTSTSKVL---------VSSRQGSVGLSVTDKQLIKVRFCAVES 63
             ST VP  AP   +  T++S +L         V  R+  + LS++ K+ ++VR    +S
Sbjct: 4   AMSTLVPFEAPPVYVVATASSPLLGCTINCLDVVGPRRTELQLSLS-KKWLRVRTFVTKS 62

Query: 64  KQEALLQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASG 123
            Q +  Q++   WEDPDDGSGSE D++DD          DLDFESDWE E + + A +  
Sbjct: 63  NQVSFSQSRQETWEDPDDGSGSESDEEDD---------YDLDFESDWEGEEN-VQAVSII 112

Query: 124 DAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYM 183
           D     +KYEEDL KEVEQLLEPEER IL QNAT N+ K+ST KW PL T  LS QI  M
Sbjct: 113 DQPAA-NKYEEDLQKEVEQLLEPEERAILEQNATLNVEKLSTPKWNPLHTFALSGQIIPM 171

Query: 184 DMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           D LLD G DIDSVD+DG +ALHKAIIG+K+AVI HLLRKGA+PH+KD +GATPLHYAVQV
Sbjct: 172 DKLLDSGFDIDSVDEDGFSALHKAIIGRKDAVIGHLLRKGASPHIKDKNGATPLHYAVQV 231

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
           GA Q VKLLIKY VDVNVAD++GWT LHIAIQ RNRDI K+LL+NGAD++R+ KDGKTAL
Sbjct: 232 GAKQIVKLLIKYKVDVNVADSDGWTALHIAIQGRNRDITKILLVNGADRNRRNKDGKTAL 291

Query: 304 DMSLCYGRDFKSYDLAKLLKILPV 327
           D+SLCYG++FKSYDL+KLLK++P+
Sbjct: 292 DLSLCYGKNFKSYDLSKLLKVVPL 315

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087710|emb|CBI34966.3| unnamed protein product [Vitis vinifera]

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 174/228 (76%), Positives = 195/228 (85%), Gaps = 1/228 (0%)

Query: 99  VKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATP 158
           ++E DLDFESDWEEE+    A  +G   +T  KYE DL+KEV QLL PEER+IL QNA P
Sbjct: 1   MEEYDLDFESDWEEEKDA-SATVTGVNKSTARKYEADLVKEVVQLLGPEERQILQQNAAP 59

Query: 159 NLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISH 218
           NL KISTAKW PL TL LS QI  MD LL  GLDID+VDKDGLTALH+AIIGKKEAVISH
Sbjct: 60  NLEKISTAKWSPLHTLALSGQIHSMDKLLANGLDIDNVDKDGLTALHRAIIGKKEAVISH 119

Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
           LLRKGANPHV+D DGATPLHYAVQVGAMQ+VKLLIKYNVD+N ADNEGWTPLHIAIQSRN
Sbjct: 120 LLRKGANPHVRDRDGATPLHYAVQVGAMQTVKLLIKYNVDINAADNEGWTPLHIAIQSRN 179

Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP 326
           R IAK LL+NGADK+R+ +DGKT LD+SLCYG+DFKSY+LAKLLK++P
Sbjct: 180 RIIAKRLLVNGADKTRRNQDGKTPLDLSLCYGKDFKSYELAKLLKLVP 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242597|ref|NP_198832.1| ankyrin repeat domain-containing protein EMB506 [Arabidopsis thaliana] gi|75313777|sp|Q9SQK3.1|EM506_ARATH RecName: Full=Ankyrin repeat domain-containing protein EMB506, chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE 506; Flags: Precursor gi|5911312|gb|AAD55746.1|AF026167_1 ankyrin repeat protein EMB506 [Arabidopsis thaliana] gi|10177503|dbj|BAB10897.1| ankyrin repeat protein EMB506 [Arabidopsis thaliana] gi|17380824|gb|AAL36099.1| putative ankyrin repeat protein EMB506 [Arabidopsis thaliana] gi|21436371|gb|AAM51355.1| putative ankyrin repeat protein EMB506 [Arabidopsis thaliana] gi|332007132|gb|AED94515.1| ankyrin repeat domain-containing protein EMB506 [Arabidopsis thaliana]

 Score =  355 bits (910), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 188/309 (60%), Positives = 226/309 (73%), Gaps = 15/309 (4%)

Query: 20  LPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQEALLQTQMGEWEDP 79
           LP  +S+   +     L +S +GS   SV  +   + R     +++   +Q++   WEDP
Sbjct: 18  LPISDSVNCKSKIVYCLSTSVRGS---SVKRQSTARTRSFTETNRRTPSVQSKHEFWEDP 74

Query: 80  DDGSGSEYDDDDDD-DEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLK 138
           DDGS SE + + ++ D  G    NDLD ESDWE++       +     TT   YEE+L K
Sbjct: 75  DDGSDSENEYEGEEEDGIG----NDLDNESDWEDD-------SRVQKLTTTDNYEEELAK 123

Query: 139 EVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDK 198
           EVEQLLEPEER IL QN  PNL  IST  W+PLQTL LSMQI+ MD L++ GLDID VDK
Sbjct: 124 EVEQLLEPEERVILQQNEKPNLKMISTKSWKPLQTLALSMQIQLMDNLIENGLDIDDVDK 183

Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
           D  TALHKAIIGKKEAVISHLLRKGANPH++D DGA P+HYAVQVGA+Q+VKLL KYNVD
Sbjct: 184 DNQTALHKAIIGKKEAVISHLLRKGANPHLQDRDGAAPIHYAVQVGALQTVKLLFKYNVD 243

Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDL 318
           VNVADNEGWTPLHIA+QSRNRDI K+LL NGADK+R+TKDGK ALD++LC+GRDFKSYDL
Sbjct: 244 VNVADNEGWTPLHIAVQSRNRDITKILLTNGADKTRRTKDGKLALDLALCFGRDFKSYDL 303

Query: 319 AKLLKILPV 327
            KLLKI+P 
Sbjct: 304 VKLLKIMPT 312

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097124|ref|XP_002334642.1| predicted protein [Populus trichocarpa] gi|222873864|gb|EEF10995.1| predicted protein [Populus trichocarpa]

 Score =  347 bits (889), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 169/229 (73%), Positives = 195/229 (85%), Gaps = 4/229 (1%)

Query: 69  LQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATT 128
           L+T+ G WEDPDDGSGS+YD +D    E E KENDLDFES+WEEE++ + A ++   +TT
Sbjct: 2   LETKDGVWEDPDDGSGSDYDQED----EEEAKENDLDFESNWEEEKNSVTATSTVTNSTT 57

Query: 129 ISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLD 188
            + Y EDL+KEVEQLL PEER I  QNA+PNL KISTAKW PLQTL LS QI++MD LLD
Sbjct: 58  ENNYGEDLVKEVEQLLGPEERAIFQQNASPNLRKISTAKWNPLQTLALSGQIKFMDKLLD 117

Query: 189 GGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQS 248
            GLDID  D DGLTALHKAIIGKKEAVISHLLRKGA+PH++D DGA+PLHYAVQVGAMQ+
Sbjct: 118 DGLDIDGQDNDGLTALHKAIIGKKEAVISHLLRKGASPHIRDRDGASPLHYAVQVGAMQT 177

Query: 249 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK 297
           VKLL+KY VDVN ADNEGWTPLHIA+QSRNRDIAKVLL+NGADK+R+TK
Sbjct: 178 VKLLLKYEVDVNAADNEGWTPLHIAVQSRNRDIAKVLLVNGADKTRRTK 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124359844|gb|ABD32433.2| Ankyrin [Medicago truncatula]

 Score =  338 bits (868), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 180/313 (57%), Positives = 225/313 (71%), Gaps = 22/313 (7%)

Query: 17  FVPLPAPNSILFGTSTSKVLVSSRQGSVGLSVTDKQLIKVRFCAVESKQE-ALLQTQ--M 73
            +P P  NS L G S  K+  S+ +    LS + +        A++S +  + LQTQ  +
Sbjct: 22  LIPFPTTNSKL-GASFQKIYRSTTKQKSRLSFSRENCESRSNVAIKSSRGVSSLQTQQEL 80

Query: 74  GEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYE 133
             WEDPD  S       D DDE G+ ++  L F++D E++ +            T  +YE
Sbjct: 81  RTWEDPDIRS-------DSDDEYGDEEDKSLGFKNDGEQKET-----------ETQDEYE 122

Query: 134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDI 193
           E + KEVE+LL+PEE EIL QN TPNL KIS+ KW PL +L LS QI  MD LL+ G DI
Sbjct: 123 ERIKKEVERLLKPEELEILQQNITPNLEKISSEKWNPLHSLGLSFQIYSMDKLLESGHDI 182

Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
           DS++K+GLTALHKA+IGKKEAVISHLLRKGA+PH++D DGATPLHYAV+VGA Q+VKLLI
Sbjct: 183 DSINKEGLTALHKAVIGKKEAVISHLLRKGASPHIQDKDGATPLHYAVEVGAKQTVKLLI 242

Query: 254 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDF 313
           KYNVDVNVADNEGWTPLH+A+QSRNRDIAK+LL NGAD+S + KDGKTALD+S+CYG+DF
Sbjct: 243 KYNVDVNVADNEGWTPLHVAVQSRNRDIAKILLANGADRSTENKDGKTALDISICYGKDF 302

Query: 314 KSYDLAKLLKILP 326
            SYDLA+L+KI P
Sbjct: 303 MSYDLARLIKIGP 315

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537833|ref|XP_003537429.1| PREDICTED: ankyrin repeat domain-containing protein EMB506, chloroplastic-like [Glycine max]

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 196/332 (59%), Positives = 236/332 (71%), Gaps = 15/332 (4%)

Query: 2   TNFVLKNSYLHGFSTFV--PLPAPNSILFGTSTSKVLVSSRQGSVGLSVT-DKQLIKVRF 58
           T+ VL N ++   +T    PL +   ++F     K+  ++ +  + LS   D   I+   
Sbjct: 67  TSSVLTNQFIPWSTTNTESPLDSKLGVIF----YKMYRNTNKRQLSLSFAWDSYKIRSIG 122

Query: 59  CAVESKQEALLQT-QMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLDFESDWEEERSGI 117
                K  +  QT Q+G WEDPD GS SE     DD+E  EV++ +  FESD EEE  G+
Sbjct: 123 AIKSYKDVSYFQTEQVGSWEDPDTGSDSE----CDDEEYEEVEDENFGFESDSEEE--GM 176

Query: 118 GAAASGDA-ATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTL 176
            A+ + D   T+   YEE + KE+EQLLEPEER IL QN TPNL KIST KW PL TL L
Sbjct: 177 KASVATDVNITSGDNYEELIKKEIEQLLEPEERAILQQNITPNLEKISTEKWSPLHTLVL 236

Query: 177 SMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATP 236
           SMQ+  +D LL+ G+DID  DK+GLTALHKAI GKKEAVISHLLR+GA+PHVKD DGA P
Sbjct: 237 SMQMSCVDKLLENGVDIDLPDKEGLTALHKAITGKKEAVISHLLRRGASPHVKDKDGAAP 296

Query: 237 LHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT 296
           LHYAVQVGA  +VKLLIKY  DVNV DNEGWTPLHIAIQSRNRDIAK+LL+NGADK+RK 
Sbjct: 297 LHYAVQVGAKMTVKLLIKYKADVNVEDNEGWTPLHIAIQSRNRDIAKILLVNGADKTRKN 356

Query: 297 KDGKTALDMSLCYGRDFKSYDLAKLLKILPVE 328
           KDGKTALD+SLCYG+DFKSYDLAKLLK +P +
Sbjct: 357 KDGKTALDLSLCYGKDFKSYDLAKLLKTVPAD 388

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	328
TAIR|locus:2173767	315	EMB506 "embryo defective 506"	0.664	0.692	0.631	2.6e-70
TAIR|locus:505006718	435	AKRP "ankyrin repeat protein"	0.518	0.390	0.464	9.9e-39
UNIPROTKB|F1NXP5	745	F1NXP5 "Uncharacterized protei	0.338	0.148	0.405	1.1e-17
UNIPROTKB|F1NNF9	765	F1NNF9 "Uncharacterized protei	0.338	0.145	0.405	1.1e-17
UNIPROTKB|F1P1R3	189	PSMD10 "Uncharacterized protei	0.448	0.777	0.312	1.8e-16
DICTYBASE|DDB_G0277249	282	DDB_G0277249 "ankyrin repeat-c	0.381	0.443	0.365	1.8e-16
UNIPROTKB|J9P7A0	1316	TNKS2 "Uncharacterized protein	0.317	0.079	0.423	5.5e-16
DICTYBASE|DDB_G0289189	232	psmD10 "26S proteasome non-ATP	0.460	0.650	0.318	7.7e-16
ZFIN|ZDB-GENE-030131-4865	1267	si:ch211-155m12.3 "si:ch211-15	0.317	0.082	0.442	1.5e-15
UNIPROTKB|G3N3N0	1389	G3N3N0 "Uncharacterized protei	0.344	0.081	0.398	2.2e-15

TAIR|locus:2173767 EMB506 "embryo defective 506" [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 142/225 (63%), Positives = 160/225 (71%)

Query:   102 NDLDFESDWEEERXXXXXXXXXXXXXXXXKYEEDXXXXXXXXXXXXXXXXXNQNATPNLG 161
             NDLD ESDWE++                  YEE+                  QN  PNL 
Sbjct:    94 NDLDNESDWEDD-------SRVQKLTTTDNYEEELAKEVEQLLEPEERVILQQNEKPNLK 146

Query:   162 KISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLR 221
              IST  W+PLQTL LSMQI+           ID VDKD  TALHKAIIGKKEAVISHLLR
Sbjct:   147 MISTKSWKPLQTLALSMQIQLMDNLIENGLDIDDVDKDNQTALHKAIIGKKEAVISHLLR 206

Query:   222 KGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI 281
             KGANPH++D DGA P+HYAVQVGA+Q+VKLL KYNVDVNVADNEGWTPLHIA+QSRNRDI
Sbjct:   207 KGANPHLQDRDGAAPIHYAVQVGALQTVKLLFKYNVDVNVADNEGWTPLHIAVQSRNRDI 266

Query:   282 AKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP 326
              K+LL NGADK+R+TKDGK ALD++LC+GRDFKSYDL KLLKI+P
Sbjct:   267 TKILLTNGADKTRRTKDGKLALDLALCFGRDFKSYDLVKLLKIMP 311

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010027 "thylakoid membrane organization" evidence=RCA

TAIR|locus:505006718 AKRP "ankyrin repeat protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 79/170 (46%), Positives = 110/170 (64%)

Query:   158 PNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVIS 217
             P+L   ++ KW PL TL    +             I++ D  GLT LH+AIIGKK+A+ +
Sbjct:   251 PDLAVATSKKWLPLHTLAACGEFYLVDSLLKHNLDINATDVGGLTVLHRAIIGKKQAITN 310

Query:   218 HLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 277
             +LLR+ ANP V D +GAT +HYAVQ  +  ++KLL+ YN D+N  D +GWTPLH+A+Q+R
Sbjct:   311 YLLRESANPFVLDDEGATLMHYAVQTASAPTIKLLLLYNADINAQDRDGWTPLHVAVQAR 370

Query:   278 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV 327
               DI K+LLI GAD   K KDG T L + L  GR+ ++Y++ KLLK  P+
Sbjct:   371 RSDIVKLLLIKGADIEVKNKDGLTPLGLCLYLGREIRTYEVMKLLKEFPL 420

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS;IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1NXP5 F1NXP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 226 (84.6 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 45/111 (40%), Positives = 70/111 (63%)

Query:   200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
             G T L  A+  +   + S L+  GA+ ++ D DG TPLH+A Q G  + V+LL+ +   V
Sbjct:   403 GYTPLIVAVQKRSPEICSVLIEHGADTNMPDEDGWTPLHFAAQNGDDRIVRLLLDHQARV 462

Query:   260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
             N  +++GWTPLH+A Q+   ++A+VLL   AD + +  DGKTAL ++ C+G
Sbjct:   463 NAQEHDGWTPLHLASQNNFENVARVLLSRQADSNTQEVDGKTALHVAACFG 513

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1NNF9 F1NNF9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 226 (84.6 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 45/111 (40%), Positives = 70/111 (63%)

Query:   200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
             G T L  A+  +   + S L+  GA+ ++ D DG TPLH+A Q G  + V+LL+ +   V
Sbjct:   395 GYTPLIVAVQKRSPEICSVLIEHGADTNMPDEDGWTPLHFAAQNGDDRIVRLLLDHQARV 454

Query:   260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
             N  +++GWTPLH+A Q+   ++A+VLL   AD + +  DGKTAL ++ C+G
Sbjct:   455 NAQEHDGWTPLHLASQNNFENVARVLLSRQADSNTQEVDGKTALHVAACFG 505

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|F1P1R3 PSMD10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 46/147 (31%), Positives = 76/147 (51%)

Query:   160 LGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHL 219
             +G    A W PL     + +             I++V+++G T LH A    K+ +   L
Sbjct:    29 VGDKDDAGWTPLHIAASAGRDEIVKALIDKGAPINAVNQNGCTPLHYAASKNKQEIAIML 88

Query:   220 LRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNR 279
             L  GA+P   D   +TPLH A   G ++ +++L+++N  VN+ D+EG TPLH+A      
Sbjct:    89 LENGADPDATDHFESTPLHRAAAKGNLKMIQILLRHNASVNIQDSEGNTPLHLACDEERV 148

Query:   280 DIAKVLLINGADKSRKTKDGKTALDMS 306
             D AK+L+ +GA    + K+  T L ++
Sbjct:   149 DEAKLLVSHGASIHTENKEELTPLKVA 175

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

DICTYBASE|DDB_G0277249 DDB_G0277249 "ankyrin repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 46/126 (36%), Positives = 76/126 (60%)

Query:   193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
             I++ +++G+T L  AI+ +    + +L+ KGAN ++ D   +TPLH AV +G+M  V+LL
Sbjct:    83 INTQNQEGVTLLQLAILKQNIPYVKYLIFKGANLNLGDLTESTPLHKAVSIGSMDLVQLL 142

Query:   253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
             ++   ++N  D EG +P H AI+     I   LL  GA+ +   +DG++ L +S C G D
Sbjct:   143 VQNGANLNSQDEEGDSPSHYAIRECQPQILSYLLSKGANANSFNEDGESLLHLSACLG-D 201

Query:   313 FKSYDL 318
             F+S  L
Sbjct:   202 FESSKL 207

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|J9P7A0 TNKS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 202 (76.2 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
 Identities = 44/104 (42%), Positives = 62/104 (59%)

Query:   202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
             T LH A    + +V+ +LL+ GA+ H KD  G  PLH A   G  +  +LL+K+   VNV
Sbjct:   678 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 737

Query:   262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
             AD   +TPLH A      +I K+LL +GAD ++K +DG T LD+
Sbjct:   738 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 781

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

DICTYBASE|DDB_G0289189 psmD10 "26S proteasome non-ATPase regulatory subunit 10" [Dictyostelium discoideum (taxid:44689)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 49/154 (31%), Positives = 76/154 (49%)

Query:   153 NQNATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKK 212
             N   +PN        W PL + T +                ++V+    T LH A    +
Sbjct:    68 NCKCSPNTN--DDGGWTPLTSATSAGHTHMVKLLLEFGADPNTVNDSKRTPLHYASSKGR 125

Query:   213 EAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHI 272
               ++  LL  GA    KD  G+ P+H A   G++ +V+ L+K   ++N  +NEG TPLHI
Sbjct:   126 SDIVDLLLTHGAKNR-KDDTGSAPIHRASSNGSVATVERLLKGEANINSTNNEGDTPLHI 184

Query:   273 AIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
             A +  + D+ + LL +GAD + + KD KT +DMS
Sbjct:   185 AAEYNHEDVVECLLKHGADTTIENKDSKTPIDMS 218

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-030131-4865 si:ch211-155m12.3 "si:ch211-155m12.3" [Danio rerio (taxid:7955)]

 Score = 209 (78.6 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 46/104 (44%), Positives = 61/104 (58%)

Query:   202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
             T LH A    + AV+ +LL  GA+ H KD  G  PLH A   G  +  +LL+++   VNV
Sbjct:   627 TPLHFAAGYNRVAVVEYLLHHGADVHAKDKGGLVPLHNACSYGHYEVAELLVRHGASVNV 686

Query:   262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
             AD   +TPLH A      +I K+LL +GAD S+K +DG  ALDM
Sbjct:   687 ADLWKFTPLHEAAAKGKYEICKLLLKHGADPSKKNRDGNMALDM 730

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|G3N3N0 G3N3N0 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 208 (78.3 bits), Expect = 2.2e-15, P = 2.2e-15
 Identities = 45/113 (39%), Positives = 62/113 (54%)

Query:   194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
             DS  K+GLT LH A     + V   LL KGA+PH    +G TPLH A +   MQ    L+
Sbjct:   458 DSAGKNGLTPLHVAAHYDNQKVALLLLEKGASPHAMAKNGYTPLHIAAKKNQMQIASTLL 517

Query:   254 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
              Y  + N+   +G TPLH+A Q  + D+  +LL  GA+    TK G T+L ++
Sbjct:   518 SYGAETNIVTKQGVTPLHLASQEGHTDMVTLLLDKGANIHMSTKSGLTSLHLA 570

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SQK3	EM506_ARATH	No assigned EC number	0.6084	0.8963	0.9333	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020794001 SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_21, whole genome shotgun sequence); (322 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	328
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-38
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-32
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-23
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-18
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-16
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-16
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-15
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-15
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-15
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-14
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-14
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-14
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-14
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-14
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-13
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-13
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-12
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-11
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-11
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-11
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-10
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	1e-09
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	6e-08
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	8e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-06
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	1e-06
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	1e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-06
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	3e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	7e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	3e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-05
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	4e-05
PHA02716	764	PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provi	5e-05
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	6e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	9e-05
smart00248	30	smart00248, ANK, ankyrin repeats	9e-05
smart00248	30	smart00248, ANK, ankyrin repeats	1e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	3e-04
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	4e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-04
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
pfam10446	449	pfam10446, DUF2457, Protein of unknown function (D	0.001
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	0.001

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  132 bits (335), Expect = 1e-38
 Identities = 53/129 (41%), Positives = 78/129 (60%), Gaps = 4/129 (3%)

Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
           ++ D+DG T LH A       V+  LL  GA+ + KD DG TPLH A + G ++ VKLL+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 254 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDF 313
           +   DVN  D +G TPLH+A ++ N D+ K+LL +GAD + + KDG+T L ++   G   
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHL- 119

Query: 314 KSYDLAKLL 322
              ++ KLL
Sbjct: 120 ---EVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  117 bits (294), Expect = 2e-32
 Identities = 43/104 (41%), Positives = 66/104 (63%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
           + +LL+ G D+++ D DG T LH A       ++  LL KGA+ + +D DG TPLH A +
Sbjct: 23  VKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR 82

Query: 243 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
            G +  VKLL+K+  DVN  D +G TPLH+A ++ + ++ K+LL
Sbjct: 83  NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 90.8 bits (226), Expect = 6e-23
 Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 2/92 (2%)

Query: 204 LHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD 263
           LH A       ++  LL KGA+ ++ D D  T LH A + G ++ VKLL+++  DVN  D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 264 NEGWTPLHIAIQSRNRDIAKVLLINGADKSRK 295
            +G T LH+A ++ N +I K+LL +GAD + K
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 86.6 bits (214), Expect = 6e-19
 Identities = 52/154 (33%), Positives = 83/154 (53%), Gaps = 4/154 (2%)

Query: 170 PLQTLTLSMQIRYMDMLLDGGLDIDSV-DKDGLTALHKAIIGKKEAVISHLLRKGANPHV 228
            L        ++ ++ LLD G   D V  KDG+T LH A I KK  ++  L+ +GA+P +
Sbjct: 71  ELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI 130

Query: 229 KDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 288
            + D  +PLH AV +G ++ ++LLI +   +++ D  G TPL IA+   +  I K+LL +
Sbjct: 131 PNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS 190

Query: 289 GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           GA+     K+G  A    LCY  +    D+ +L 
Sbjct: 191 GANIDYFGKNGCVAA---LCYAIENNKIDIVRLF 221

Length = 413

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 79.0 bits (195), Expect = 3e-18
 Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 2/105 (1%)

Query: 149 REILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAI 208
           + +L   A  N          PL     +  +  + +LL+ G D+++ DKDG T LH A 
Sbjct: 24  KLLLENGADVNA--KDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA 81

Query: 209 IGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
                 V+  LL+ GA+ + +D DG TPLH A + G ++ VKLL+
Sbjct: 82  RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 80.9 bits (200), Expect = 5e-17
 Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 20/143 (13%)

Query: 184 DMLLDGGLDIDSVDKDGLTALHKAIIGKKEAV--ISHLLRKGANPHVKDGDGATPLHYA- 240
            +LL+ G ++++ D +G+T L  AI  K  +   + +LL  GAN ++K+ DG   LH   
Sbjct: 90  KLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYL 149

Query: 241 -----------------VQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAK 283
                            V + A   V  L+ Y V +N+ D  G+TPLH A+ + N +  K
Sbjct: 150 ESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVK 209

Query: 284 VLLINGADKSRKTKDGKTALDMS 306
            LL  GA+ +   K G T L ++
Sbjct: 210 YLLDLGANPNLVNKYGDTPLHIA 232

Length = 422

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 73.4 bits (181), Expect = 1e-16
 Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 6/86 (6%)

Query: 237 LHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT 296
           LH A + G ++ VKLL++   DVN+ D +  T LH+A ++ N +I K+LL +GAD + K 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 297 KDGKTALDMSLCYGRDFKSYDLAKLL 322
           KDG TAL ++   G      ++ KLL
Sbjct: 59  KDGNTALHLAARNGN----LEIVKLL 80

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 71.5 bits (176), Expect = 6e-16
 Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
           + +LL+ G D++  D D  TALH A       ++  LL  GA+ + KD DG T LH A +
Sbjct: 13  VKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAAR 70

Query: 243 VGAMQSVKLLIKYNVDVNVAD 263
            G ++ VKLL+++  D+N+ D
Sbjct: 71  NGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 77.8 bits (192), Expect = 6e-16
 Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 9/144 (6%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           ++      D   K  +  L+ A   +   V+  LL  GA+ +    + +TPLHY   +  
Sbjct: 21  IIMEDDLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKY 80

Query: 246 MQS-----VKLLIKYNVDVNVADNEGWTPLHIAIQ--SRNRDIAKVLLINGADKSRKTKD 298
             +     VKLL++Y  +VN  DN G TPL  AI   S +  I + LL NGA+ + K  D
Sbjct: 81  NLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSD 140

Query: 299 GKTALDMSLCYGRDFKSYDLAKLL 322
           G+  L + L   +      + KLL
Sbjct: 141 GENLLHLYLESNKI--DLKILKLL 162

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 24/162 (14%)

Query: 151 ILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDM---LLDGGLDIDSVDKDGLTALHKA 207
           +L   A  N          PL    +S +     +   LLD G +++  + DG   LH  
Sbjct: 92  LLEYGANVN--APDNNGITPLL-YAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLY 148

Query: 208 IIGKK------EAVISH------------LLRKGANPHVKDGDGATPLHYAVQVGAMQSV 249
           +   K      + +I              LL  G   ++KD  G TPLHYAV     + V
Sbjct: 149 LESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFV 208

Query: 250 KLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 291
           K L+    + N+ +  G TPLHIAI + N++I K+LL NG  
Sbjct: 209 KYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS 250

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 74.6 bits (183), Expect = 7e-15
 Identities = 39/104 (37%), Positives = 63/104 (60%), Gaps = 1/104 (0%)

Query: 215 VISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI 274
           +I  +L  G + ++KD +  T LHYA++ G ++S+K+L +Y  DVN+ D+ G  P+HIAI
Sbjct: 106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAI 165

Query: 275 QSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDL 318
           +    DI K+LL  GA  + K  +G++ L  +  YG D+    L
Sbjct: 166 KHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYG-DYACIKL 208

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 74.7 bits (184), Expect = 8e-15
 Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 5/138 (3%)

Query: 184 DMLLDGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLH-YAV 241
            +LL+ G D+++ ++ G T LH  +       VI  L++ GA+ + KD  G TPLH Y  
Sbjct: 67  RLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLS 126

Query: 242 QVGAMQSV-KLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA--KVLLINGADKSRKTKD 298
                  V +LL++   DVN  D  G TPL + ++SRN ++   ++L+  GAD       
Sbjct: 127 GFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDR 186

Query: 299 GKTALDMSLCYGRDFKSY 316
            ++ L   L   +     
Sbjct: 187 FRSLLHHHLQSFKPRARI 204

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 73.5 bits (180), Expect = 2e-14
 Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 2/127 (1%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
           + ML + G D++  D +G   +H AI      +I  LL KGA  +VKD +G +PLH A +
Sbjct: 140 IKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAE 199

Query: 243 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTA 302
            G    +KLLI +   +      G+TPLH AI   NR   + LLIN A  + +  DG T 
Sbjct: 200 YGDYACIKLLIDHGNHIMNKCKNGFTPLHNAI-IHNRSAIE-LLINNASINDQDIDGSTP 257

Query: 303 LDMSLCY 309
           L  ++  
Sbjct: 258 LHHAINP 264

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 72.4 bits (178), Expect = 4e-14
 Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 6/128 (4%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALH---KAIIGKKEAVISHLLRKGANPHVKDGDGATPLHY 239
           +  LL  G D++   + G T LH        K + ++  LL  GA+ +  +  G TPLH 
Sbjct: 30  VRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHL 89

Query: 240 AVQVGAMQSV-KLLIKYNVDVNVADNEGWTPLHI--AIQSRNRDIAKVLLINGADKSRKT 296
            +       V KLLIK   DVN  D  G TPLH+  +  + N  + ++LL  GAD +   
Sbjct: 90  YLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALD 149

Query: 297 KDGKTALD 304
             G T L 
Sbjct: 150 LYGMTPLA 157

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 70.2 bits (171), Expect = 5e-14
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 8/109 (7%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISH-----LLRKGA---NPHVKDGDGATPL 237
           LL  G D+++ D DG T LH A +       +      LL  GA     +++D DG TPL
Sbjct: 92  LLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPL 151

Query: 238 HYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
           H+A   G    V+LL++   D N  ++ G T L  A ++   ++ K+LL
Sbjct: 152 HWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLL 200

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 69.9 bits (170), Expect = 6e-14
 Identities = 48/170 (28%), Positives = 76/170 (44%), Gaps = 12/170 (7%)

Query: 147 EEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGL----DIDSVDKDGLT 202
            +  ++      +L   + +  +    L L++        L   L     + + D DG  
Sbjct: 16  LDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRL 75

Query: 203 ALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAV-----QVGAMQSVKLLIKYNV 257
            LH A     + ++  LL  GA+ + KD DG TPLH A        G ++  KLL++   
Sbjct: 76  PLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGA 135

Query: 258 ---DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
                N+ D +G TPLH A  + + DI ++LL  GAD + +   G TALD
Sbjct: 136 DLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALD 185

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 71.5 bits (175), Expect = 7e-14
 Identities = 40/126 (31%), Positives = 66/126 (52%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           +LD G+D++  D +  T LH AI       I  L   GA+ +++D +G  P+H A++   
Sbjct: 110 ILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNF 169

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
              +KLL++     NV DN G +PLH A +  +    K+L+ +G     K K+G T L  
Sbjct: 170 FDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHN 229

Query: 306 SLCYGR 311
           ++ + R
Sbjct: 230 AIIHNR 235

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 17/194 (8%)

Query: 130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQT-LTLSMQIRYMDMLLD 188
               E +   V  LLE          A  ++       + PL   L  +  +  + +L+ 
Sbjct: 56  HYSSEKVKDIVRLLLE----------AGADVNAPERCGFTPLHLYLYNATTLDVIKLLIK 105

Query: 189 GGLDIDSVDKDGLTALHKAIIGK--KEAVISHLLRKGANPHVKDGDGATPLH-YAVQVGA 245
            G D+++ DK G T LH  + G      VI  LLRKGA+ +  D  G TPL        A
Sbjct: 106 AGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNA 165

Query: 246 -MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR--NRDIAKVLLINGADKSRKTKDGKTA 302
            ++ ++LLI    DV   D+   + LH  +QS      I + L+  G D +     G T 
Sbjct: 166 NVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTP 225

Query: 303 LDMSLCYGRDFKSY 316
           L          +S 
Sbjct: 226 LHSMATGSSCKRSL 239

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 69.5 bits (170), Expect = 4e-13
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 4/140 (2%)

Query: 170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVK 229
            L   T +   R  ++LL  G +++  DK   + LH A+    + ++  LL  GA+   +
Sbjct: 171 ALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDAR 230

Query: 230 DGDGATPLHYAV-QVGAMQSVKLLIKYNVDVNVADN-EGWTPLHIAIQSRNRDIAKVLLI 287
           D  G TPLH +V        +KLL+++ VDVN      G T LH +I+S      K+LL 
Sbjct: 231 DKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKS--ERKLKLLLE 288

Query: 288 NGADKSRKTKDGKTALDMSL 307
            GAD +       T L  ++
Sbjct: 289 YGADINSLNSYKLTPLSSAV 308

Length = 477

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 47/155 (30%), Positives = 78/155 (50%), Gaps = 17/155 (10%)

Query: 168 WRPLQTLTLSMQIRYMDM---LLDGGLDIDSVDKDGLTALH-----KAIIGKKEAVISHL 219
            +P+  L L+ + R +D+   LLD G DI+S  K+  T LH     K  +   + ++  L
Sbjct: 33  KKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLL 92

Query: 220 LRKGANPHVKDGDGATPLHYAVQ--VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 277
           L  GAN +  D +G TPL YA+     +   V+ L+    +VN+ +++G   LH+ ++S 
Sbjct: 93  LEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESN 152

Query: 278 NRD--IAKVLLINGADKSRKTKDGKTALDMSLCYG 310
             D  I K+L+  G D      + K  ++  L YG
Sbjct: 153 KIDLKILKLLIDKGVD-----INAKNRVNYLLSYG 182

Length = 422

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 66.5 bits (162), Expect = 3e-12
 Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 3/141 (2%)

Query: 170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVK 229
           P+           + +LL+ G   +  D +G + LH A      A I  L+  G +   K
Sbjct: 160 PIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK 219

Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR-NRDIAKVLLIN 288
             +G TPLH A+ +    +++LLI  N  +N  D +G TPLH AI    + DI  +LL +
Sbjct: 220 CKNGFTPLHNAI-IHNRSAIELLIN-NASINDQDIDGSTPLHHAINPPCDIDIIDILLYH 277

Query: 289 GADKSRKTKDGKTALDMSLCY 309
            AD S K   G+  +D +  Y
Sbjct: 278 KADISIKDNKGENPIDTAFKY 298

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 16/146 (10%)

Query: 180 IRYMDMLLDGGLDIDSVDKDGLTALH--KAIIGKKEAVISHLLRKGANPHVKDGDGATPL 237
           +  + +L+D G D+ +VD    + LH        +  ++  L+R G +P   D  G TPL
Sbjct: 167 VELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPL 226

Query: 238 HYAVQVGAMQS-------VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
           H      A  S       + LLI   + +N  +  G TPLH A    N    + L+  GA
Sbjct: 227 HSM----ATGSSCKRSLVLPLLIA-GISINARNRYGQTPLHYAAVFNNPRACRRLIALGA 281

Query: 291 DKSRKTKDGKTALDMSL--CYGRDFK 314
           D +  + DG T L + +    GR  +
Sbjct: 282 DINAVSSDGNTPLSLMVRNNNGRAVR 307

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 65.0 bits (158), Expect = 1e-11
 Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 9/119 (7%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           +L+D G  I +  K+G T LH AII  + A+   LL   A+ + +D DG+TPLH+A+   
Sbjct: 208 LLIDHGNHIMNKCKNGFTPLHNAIIHNRSAI--ELLINNASINDQDIDGSTPLHHAINPP 265

Query: 245 -AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRD------IAKVLLINGADKSRKT 296
             +  + +L+ +  D+++ DN+G  P+  A +  N+D      IA  +LI  ADK + +
Sbjct: 266 CDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIANAVLIKEADKLKDS 324

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 4/109 (3%)

Query: 215 VISHLLRKGANPHVKDGD-GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIA 273
           +   LL  GA+ ++KD   G T LHYA +    +  +LL+ Y  +VN+ D    +PLH A
Sbjct: 149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHA 208

Query: 274 IQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           ++  N+ I  +LL NGA    + K G T L +S+ Y    K YD+ KLL
Sbjct: 209 VKHYNKPIVHILLENGASTDARDKCGNTPLHISVGY---CKDYDILKLL 254

Length = 477

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 57.4 bits (139), Expect = 4e-11
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 219 LLRKG-ANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIA 273
           LL  G  + +  DG+G TPLH A + GA++ V+ L+K  VD+N+ D++G T L +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 26/68 (38%), Positives = 44/68 (64%)

Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
           LL  GA+P+ +D DG TPLH A   G +Q V++L+++  D  + D +G TPL +A ++  
Sbjct: 101 LLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF 160

Query: 279 RDIAKVLL 286
           R++ ++L 
Sbjct: 161 REVVQLLS 168

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 23/54 (42%), Positives = 34/54 (62%)

Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
           G TALHKA I  +  ++ +LL KG + +  D DG T LH A + G ++ +KLL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 59.1 bits (142), Expect = 4e-10
 Identities = 46/142 (32%), Positives = 62/142 (43%), Gaps = 15/142 (10%)

Query: 192 DIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANP---HVKDGDGATPLHYAVQVGAMQS 248
              S   D    L+  +     A +S LL K         +D DG  PLH A   G  + 
Sbjct: 29  LDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKI 88

Query: 249 VKLLIKYNVDVNVADNEGWTPLHIAI-----QSRNRDIAKVLLINGADKS---RKTKDGK 300
           VKLL+    DVN  D +G TPLH+A         N ++AK+LL  GAD      + +DG 
Sbjct: 89  VKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN 148

Query: 301 TALDMSLCYGRDFKSYDLAKLL 322
           T L  +   G      D+ +LL
Sbjct: 149 TPLHWAALNGDA----DIVELL 166

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 54.2 bits (131), Expect = 5e-10
 Identities = 22/52 (42%), Positives = 33/52 (63%)

Query: 235 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
           T LH A   G ++ VK L++  VD+N  D +G T LHIA ++ N ++ K+LL
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 1/126 (0%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           LLD G++ +    DG++ +  A+  +    I  L++ GA P VK  D  + LH AV+ G 
Sbjct: 21  LLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80

Query: 246 MQSVKLLIKYNVDVN-VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
           +++V+ L+      + V   +G TPLH+A   +  DI K+L+  GAD      D  + L 
Sbjct: 81  VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLH 140

Query: 305 MSLCYG 310
           +++  G
Sbjct: 141 LAVMMG 146

Length = 413

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 31/141 (21%)

Query: 182 YMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPL---- 237
            ++ LL   LD D  D  G T LH A     E  +  LL+   N H++D +G T L    
Sbjct: 540 LLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAI 599

Query: 238 ---HY------------------------AVQVGAMQSVKLLIKYNVDVNVADNEGWTPL 270
              H+                        A +   + ++K L+K  ++V+  D++G T L
Sbjct: 600 SAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATAL 659

Query: 271 HIAIQSRNRDIAKVLLINGAD 291
            +A+   + D+ ++L++NGAD
Sbjct: 660 QVAMAEDHVDMVRLLIMNGAD 680

Length = 823

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 4/101 (3%)

Query: 212 KEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQS---VKLLIKYNVDVNVADNEGWT 268
               +  LL  GA+ + +   G TPLH  +   + +    V+LL++   DVN  +  G+T
Sbjct: 26  TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFT 85

Query: 269 PLHIAIQSRNR-DIAKVLLINGADKSRKTKDGKTALDMSLC 308
           PLH+ + +    D+ K+L+  GAD + K K G+T L + L 
Sbjct: 86  PLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLS 126

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 251 LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
           LL    +D+N  D  G TPLH+A +    ++ + LL  G D + +  DG TALD+
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 53.3 bits (127), Expect = 3e-08
 Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 18/113 (15%)

Query: 179 QIRYMDMLLDGGLDIDSV---DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGAT 235
            I    +LL+ G D+D     D+DG T LH A +     ++  LL  GA+P+ ++  G T
Sbjct: 123 NIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVT 182

Query: 236 PLHYAVQVGAMQSVKLLIKY---------------NVDVNVADNEGWTPLHIA 273
            L  A + G ++ VKLL+                 N +V+  +    T L IA
Sbjct: 183 ALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVSKRNILNLTSLIIA 235

Length = 235

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 29/71 (40%), Positives = 39/71 (54%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           +LL GG D +  D DG T LH A       V+  LL  GA+P + D DG TPL  A + G
Sbjct: 100 ILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENG 159

Query: 245 AMQSVKLLIKY 255
             + V+LL ++
Sbjct: 160 FREVVQLLSRH 170

Length = 664

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 53.5 bits (128), Expect = 6e-08
 Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 6/108 (5%)

Query: 206 KAIIGKKEAVISH-LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN 264
           K  I + E +I+  LL  GA+ + KD    TP+HYA + G  + V LL+ Y  DVN+   
Sbjct: 150 KERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIAL 209

Query: 265 EGWTPLHIAIQSRNRDIAKVLL-----INGADKSRKTKDGKTALDMSL 307
           +  + L  A+ S+N D  K ++     IN  D S         L+ SL
Sbjct: 210 DDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSL 257

Length = 682

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYA 240
           +L  G +D+++ D +G T LH A   G  E V   LL+ G + +++D DG T L  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQ-WLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 53.1 bits (127), Expect = 1e-07
 Identities = 38/124 (30%), Positives = 67/124 (54%), Gaps = 4/124 (3%)

Query: 170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAV-ISHLLRKGANPHV 228
           P+    +   +  ++ LLD G DI+++ +   TALH A+ G    + +  L+ +GAN + 
Sbjct: 378 PIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS 437

Query: 229 KDGDGATPLHYAVQVGA-MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI 287
           K+ D +TPLHYA +    +  +++L+    DVN  + +   PL IA++     I  +LL 
Sbjct: 438 KNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYHG--IVNILLH 495

Query: 288 NGAD 291
            GA+
Sbjct: 496 YGAE 499

Length = 682

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 2/108 (1%)

Query: 181 RYMDMLLDGGLDIDSVDKDGLTALHKAIIGK--KEAVISHLLRKGANPHVKDGDGATPLH 238
           R +  L+  G D  + D  G T LH    G   K +++  LL  G + + ++  G TPLH
Sbjct: 203 RIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLH 262

Query: 239 YAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
           YA      ++ + LI    D+N   ++G TPL + +++ N    +  L
Sbjct: 263 YAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAAL 310

Length = 471

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 232 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN 264
           DG TPLH A + G ++ VKLL++   DVN  D 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 50.1 bits (119), Expect = 8e-07
 Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 186 LLDGGLDIDSVDKDGLTALHKA-IIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           L+  G D+++ D+  +T LH+A  + + + ++  LL  GAN + +D    TP+HYA    
Sbjct: 327 LIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRN 386

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA-KVLLINGADKSRKTKDGKTAL 303
            +  +  L+ Y  D+     +  T LH A+   N  ++ K L+  GA+ + K KD  T L
Sbjct: 387 NVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPL 446

Length = 682

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 13/33 (39%), Positives = 23/33 (69%)

Query: 265 EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK 297
           +G TPLH+A ++ + ++ K+LL  GAD + + K
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 7/102 (6%)

Query: 215 VISHLLRKGANPHVK----DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEG-WTP 269
           +I  +L+ GA+P       +     PL YA+      + KLLI+Y  DVN    E   TP
Sbjct: 48  IIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP 107

Query: 270 LHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL--CY 309
           L+I++        ++LL  GAD + +T D  T ++++L  C 
Sbjct: 108 LYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICN 149

Length = 300

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 14/166 (8%)

Query: 169 RPLQTLTLSMQIRYMDMLLDGGLDIDSVDKD---GLTALHKAIIGKKEA--VISHLLRKG 223
           + LQ  + S  I  + + ++ G +++ +D +    L  +   I   K    ++  L+  G
Sbjct: 42  KYLQRDSPSTDI--VKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENG 99

Query: 224 ANPHVKDGDGATPLHYAVQVGAMQSVKLL---IKYNVDVNVADNEGWTPLHIAIQSRNR- 279
           A+ + K+ DG TPL+  +  G + ++++L   I+   D  + D +G+T L + +QS +  
Sbjct: 100 ADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHI 159

Query: 280 --DIAKVLLINGAD-KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
             +I K+LL  G D  +   K+    L     Y  D    D+ KL 
Sbjct: 160 DIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLF 205

Length = 489

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 11/191 (5%)

Query: 124 DAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPL----QTLTLSMQ 179
           D  + I+K +  LLK +    E  E  +L  +A  ++  I   K  PL    Q  +LS  
Sbjct: 232 DNRSNINKNDLSLLKAIRN--EDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLS-- 287

Query: 180 IRYMDMLLDGGLDIDSVDKDGLTALH-KAIIGKKEAVISHLLRKGANPHVKDGDGATPLH 238
            R +  LL+ G D+++ +  G T L+  A  G     I  L+  GA+ +  D    TPLH
Sbjct: 288 -RLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLH 346

Query: 239 YAVQVGAMQSVKL-LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK 297
            A  +   + + + L++   +VN  D    TP+H A    N  I   LL  GAD    ++
Sbjct: 347 QASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQ 406

Query: 298 DGKTALDMSLC 308
              TAL  +LC
Sbjct: 407 KIGTALHFALC 417

Length = 682

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 48.1 bits (114), Expect = 3e-06
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 181 RYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHY- 239
           R+++ LL  G   +  D DG   LH A       +++ LL  GA+P+  D    TPL+Y 
Sbjct: 53  RFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYL 112

Query: 240 -AVQVGAMQSVKLLIKYNVDVNVA-DNEGWTPLHIAIQSRNRDIAKVLLI 287
                  ++ + LL++Y   +N + D EG  PL        R   K++ I
Sbjct: 113 SGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSI 162

Length = 446

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 7e-06
 Identities = 23/59 (38%), Positives = 34/59 (57%)

Query: 235 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS 293
           TPL  A++ G  + V+L IK+  D+N  + +   PL  AI+    DI K+L+ NG D S
Sbjct: 37  TPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTS 95

Length = 434

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 2/102 (1%)

Query: 184 DMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           D+L D G + D  +      L  A  G   A++  LL+   +P + D  G TPLH A   
Sbjct: 511 DLLGDNGGEHDDPNMAS-NLLTVASTGNA-ALLEELLKAKLDPDIGDSKGRTPLHIAASK 568

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
           G    V +L+K+  +V++ D  G T L  AI +++  I ++L
Sbjct: 569 GYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRIL 610

Length = 823

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 6/77 (7%)

Query: 249 VKLLIKYNVDVNVADNEGWTPLHIAIQSRN---RDIAKVLLINGADKSRKTKDGKTALDM 305
           V+ L+    DVN     G TPLH+ +   +   +DI ++LL  GAD +   + G T L +
Sbjct: 30  VRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHL 89

Query: 306 SLCYGRDFKSYDLAKLL 322
            L       + D+ KLL
Sbjct: 90  YLYNA---TTLDVIKLL 103

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 43/188 (22%), Positives = 67/188 (35%), Gaps = 52/188 (27%)

Query: 182 YMDMLLDGGLDI----DSVDK-----DGLTA-----LHKAIIGKKEAVISHLLRKGANPH 227
           Y  M  D    I    + +D         +      LH+A+  +   V+  LL +G N +
Sbjct: 5   YKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVN 64

Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIK------------------YNVDVNVA------- 262
             D    TPLH   +      +K +I+                   N +V +        
Sbjct: 65  QPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNR 124

Query: 263 -DNEGWTPLHIAIQSRNRD------IAKVLLINGADKSRKTKD-GKTALDMSLCYGRDFK 314
             N   T   + I  +++D      I K+LL  GAD + K +  G TAL     Y  + K
Sbjct: 125 YKNI-QTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALH----YATENK 179

Query: 315 SYDLAKLL 322
              L +LL
Sbjct: 180 DQRLTELL 187

Length = 477

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 32/156 (20%)

Query: 179 QIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLH 238
           ++   +MLL+GG D+++ D   +T +H A       +++ LL  GA+ ++   D  + L 
Sbjct: 157 ELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLE 216

Query: 239 YAVQVGAMQSVKLLI--KYNVD---------------------------VNVADNEGWTP 269
            AV    + ++K +I  + N++                           VN  D+   TP
Sbjct: 217 CAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTP 276

Query: 270 LHIAIQ--SRNRDIAKVLLINGADKSRKTKDGKTAL 303
           LH A Q  S +R + K LL  GAD + K   G+T L
Sbjct: 277 LHHASQAPSLSRLVPK-LLERGADVNAKNIKGETPL 311

Length = 682

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 39.9 bits (94), Expect = 3e-05
 Identities = 13/27 (48%), Positives = 21/27 (77%)

Query: 265 EGWTPLHIAIQSRNRDIAKVLLINGAD 291
           +G TPLH+A ++ N ++ K+LL +GAD
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 23/58 (39%), Positives = 35/58 (60%)

Query: 249 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
            ++L+    D N  D +G TPLHIA  + +  + +VLL  GAD +   KDGKT L+++
Sbjct: 98  ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELA 155

Length = 664

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 266 GWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           G T LH A  S   ++ K LL  G D +R  +DG TAL ++   G      ++ KLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGN----LEVLKLL 53

Length = 54

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 24/81 (29%), Positives = 41/81 (50%)

Query: 207 AIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEG 266
            I G  E  +  LL +G +P+  D DG  PLH A ++   + V +L+ +  D N  D + 
Sbjct: 46  GIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQH 105

Query: 267 WTPLHIAIQSRNRDIAKVLLI 287
            TPL+    + +  I ++ L+
Sbjct: 106 KTPLYYLSGTDDEVIERINLL 126

Length = 446

>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 18/125 (14%)

Query: 215 VISHLLRKGANPHVKDGDGATPLH-YAVQVGAMQS-VKLLIKYNVDVNVADNEGWTPLHI 272
           V+   L+ G   H KD  G T LH Y ++       +KLL +Y  D+N  DN G T LH 
Sbjct: 299 VVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHT 358

Query: 273 AIQSR---------------NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYD 317
            + S                  D+ + L+  GAD +     G T L   +C  +++  YD
Sbjct: 359 YL-SMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYD 417

Query: 318 LAKLL 322
           +   L
Sbjct: 418 IIDCL 422

Length = 764

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 6/108 (5%)

Query: 177 SMQIRYMDMLLDGGLDIDSVDKDGLTALHKAI--IGKKEAVISHLLRKGANPHVKDGDGA 234
           +++   + +L+D G  I   D+DG   LH  +     +  VI  L+  G +   KD D  
Sbjct: 100 NVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNN 159

Query: 235 TPLH-YAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI 281
             L+ Y +     +    L    +D+N  +  G+    +    + R++
Sbjct: 160 NILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDL---IKFRNL 204

Length = 209

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 9e-05
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKD 230
           DG T LH A       V+  LL  GA+ + +D
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.7 bits (91), Expect = 9e-05
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 232 DGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
           DG TPLH A + G ++ VKLL+    D+N 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 13/27 (48%), Positives = 20/27 (74%)

Query: 265 EGWTPLHIAIQSRNRDIAKVLLINGAD 291
           +G TPLH+A ++ N ++ K+LL  GAD
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 15/95 (15%)

Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVK-DGD-------------GATPLHYAVQVGA 245
           G+TALH A   +   ++  LL +GA+   +  GD             G +PL+ A  +G+
Sbjct: 128 GITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGS 187

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIA-IQSRNR 279
              V LL +   D+  AD+ G T LH+  +++  +
Sbjct: 188 PSIVALLSEDPADILTADSLGNTLLHLLVMENEFK 222

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 6/67 (8%)

Query: 226 PHVKDGD-----GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI-QSRNR 279
           P++KD +     G T LH AV+      V LL++   DVN+  N G+T + IAI +SRN 
Sbjct: 440 PYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNI 499

Query: 280 DIAKVLL 286
           ++ K+LL
Sbjct: 500 ELLKMLL 506

Length = 661

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 5/115 (4%)

Query: 149 REILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAI 208
           + ++ + A P++   +T K+ PL    +   I+ +++L+D    +D  D  G T L  A+
Sbjct: 119 KLLIARGADPDIP--NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAM 176

Query: 209 IGKKEAVISHLLRKGANPHV--KDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
                A+   LL  GAN     K+G     L YA++   +  V+L IK   D N+
Sbjct: 177 AKGDIAICKMLLDSGANIDYFGKNGC-VAALCYAIENNKIDIVRLFIKRGADCNI 230

Length = 413

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 39.7 bits (92), Expect = 0.001
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 5/100 (5%)

Query: 181 RYMDMLLDGGLDIDSVDKDGLTALHKAIIGK--KEAVISHLLRKGANPHVKDGDGATPLH 238
           R    ++  G +   VDK G   +H+ ++    K + IS +++ G +P   D DG TPLH
Sbjct: 154 RVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLH 213

Query: 239 YAVQ--VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 276
                 V  +  + LL+  + DVN  +  G +PL + I++
Sbjct: 214 IVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKT 252

Length = 446

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 14/30 (46%), Positives = 21/30 (70%)

Query: 232 DGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
           DG TPLH A + G ++ VKLL+++  D+N 
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457)

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 46  LSVTDKQLIKVRFCAVESKQEALLQTQMGEWEDPDDGSGSEYDDDDDDDEEGEVKENDLD 105
           L+ T K+   +R    E+++EA+ +    E +D DD    E DDDDDDDE+ +  E+D D
Sbjct: 28  LNDTMKKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDED-DEDEDDDD 86

Query: 106 FESDWEEERSG-------IGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQ 154
                +             G A S D +   S+Y             P + E + +
Sbjct: 87  STLHDDSSADDGNETDNEAGFADSDDESDDGSEYVFWAPGTTTAATSPRKLETMRR 142

This is a family of uncharacterized proteins. Length = 449

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 23/64 (35%), Positives = 32/64 (50%)

Query: 204 LHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD 263
           LH+A   +   ++  LL  G +    D  G T L+YAV  G MQ+VKL +K N  +    
Sbjct: 65  LHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG 124

Query: 264 NEGW 267
             GW
Sbjct: 125 KTGW 128

Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	328
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
PHA03095	471	ankyrin-like protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.96
PHA03095	471	ankyrin-like protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02876	682	ankyrin repeat protein; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02876	682	ankyrin repeat protein; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
KOG0510	929	consensus Ankyrin repeat protein [General function	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
KOG0510	929	consensus Ankyrin repeat protein [General function	99.94
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.93
KOG0514	452	consensus Ankyrin repeat protein [General function	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
PHA02795	437	ankyrin-like protein; Provisional	99.92
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.91
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.91
PHA02741	169	hypothetical protein; Provisional	99.91
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.9
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.89
PHA02792	631	ankyrin-like protein; Provisional	99.89
PHA02736	154	Viral ankyrin protein; Provisional	99.89
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
PHA02792	631	ankyrin-like protein; Provisional	99.89
PHA02736	154	Viral ankyrin protein; Provisional	99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.87
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.86
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.86
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
KOG0514	452	consensus Ankyrin repeat protein [General function	99.85
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.84
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.83
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.82
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.81
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.81
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.8
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.8
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.8
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.73
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.72
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.7
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.67
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.67
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.66
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.61
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.59
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.56
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.56
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.54
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.5
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.5
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.49
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.47
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.47
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.45
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.03
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.98
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.91
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.89
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.88
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.87
PF13606	30	Ank_3: Ankyrin repeat	98.87
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.87
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.84
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.82
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.76
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.75
PF13606	30	Ank_3: Ankyrin repeat	98.74
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.72
KOG0522	560	consensus Ankyrin repeat protein [General function	98.69
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.66
KOG0522	560	consensus Ankyrin repeat protein [General function	98.65
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.58
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.52
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.5
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.48
KOG2384	223	consensus Major histocompatibility complex protein	98.31
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.3
KOG2384	223	consensus Major histocompatibility complex protein	98.25
KOG0511	516	consensus Ankyrin repeat protein [General function	98.2
KOG0511	516	consensus Ankyrin repeat protein [General function	98.18
KOG2505	591	consensus Ankyrin repeat protein [General function	97.52
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.19
KOG2505	591	consensus Ankyrin repeat protein [General function	96.97
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.87
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.87
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.32
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.97
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.86
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.22
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	89.02
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	85.4
PF10446	458	DUF2457: Protein of unknown function (DUF2457); In	85.31
PF06524	314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	80.64

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-35  Score=240.81  Aligned_cols=175  Identities=27%  Similarity=0.364  Sum_probs=139.8

Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHH-HCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHC
Q 020274          144 LEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLL-DGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRK  222 (328)
Q Consensus       144 ~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  222 (328)
                      -...+.++++.....-....+.+|+|||||||..|+.+++.+|+ +.+..+|.+|..||||||.||..|+.++|+.|+.+
T Consensus        15 ~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r   94 (226)
T KOG4412|consen   15 EEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNR   94 (226)
T ss_pred             hHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcC
Confidence            34455566655442222223458888888888888888888888 56777888888888888888888888888888887


Q ss_pred             -CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 020274          223 -GANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKT  301 (328)
Q Consensus       223 -g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~T  301 (328)
                       |+++|..+..|.||||+|+..|..+|+++|+++|+.++++|..|.||||-|+..|..+++++|+..|+.+|.+|+.|+|
T Consensus        95 ~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~T  174 (226)
T KOG4412|consen   95 SGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFT  174 (226)
T ss_pred             CCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCcc
Confidence             8888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHcCCCCChHHHHHHH
Q 020274          302 ALDMSLCYGRDFKSYDLAKLL  322 (328)
Q Consensus       302 pL~~A~~~g~~~~~~~i~~lL  322 (328)
                      |||.|..-|+    .++..+|
T Consensus       175 pL~~al~e~~----~d~a~lL  191 (226)
T KOG4412|consen  175 PLHHALAEGH----PDVAVLL  191 (226)
T ss_pred             HHHHHHhccC----chHHHHH
Confidence            8888888887    4444444

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.1e-32  Score=246.92  Aligned_cols=186  Identities=17%  Similarity=0.122  Sum_probs=170.9

Q ss_pred             ccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC
Q 020274          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK  211 (328)
Q Consensus       132 ~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g  211 (328)
                      ....|+.|+..+..+.++.+++.|++++..    .++||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|
T Consensus        30 G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~----d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g  105 (284)
T PHA02791         30 GHSALYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSG  105 (284)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCcCCCcCC----CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            456789999999999999999999887653    4689999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCC-hHHHHHHHcCCHHHHHHHHhCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020274          212 KEAVISHLLRKGANPHVKDGDGA-TPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAKVLLING  289 (328)
Q Consensus       212 ~~~~v~~Ll~~g~d~~~~d~~g~-tpLh~A~~~g~~~iv~~Ll~~ga~in~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~g  289 (328)
                      +.+++++|+++|++++.++..|+ ||||+|+..|+.+++++|++++++.  .+ ..|.||||+|+..|+.+++++|+++|
T Consensus       106 ~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~g  183 (284)
T PHA02791        106 NMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYM  183 (284)
T ss_pred             CHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCC
Confidence            99999999999999999998885 8999999999999999999987643  23 25899999999999999999999999


Q ss_pred             CCCCCCCCCCCcH-HHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          290 ADKSRKTKDGKTA-LDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       290 ad~~~~d~~G~Tp-L~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      ++++.++..|.|| ||+|+..|+    .+++++|.....
T Consensus       184 Ad~n~~d~~g~t~~L~~Aa~~~~----~e~v~lLl~~Ga  218 (284)
T PHA02791        184 TSTNTNNSLLFIPDIKLAIDNKD----LEMLQALFKYDI  218 (284)
T ss_pred             CCCCcccCCCCChHHHHHHHcCC----HHHHHHHHHCCC
Confidence            9999999999987 999999999    999999987654

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-33  Score=228.40  Aligned_cols=172  Identities=30%  Similarity=0.409  Sum_probs=158.0

Q ss_pred             HHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCcHHHHHHHcCCH
Q 020274          135 DLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDG-GLDIDSVDKDGLTALHKAIIGKKE  213 (328)
Q Consensus       135 ~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gadi~~~d~~g~t~L~~A~~~g~~  213 (328)
                      .++-++.-|..+.+.-|+. ..+.+++..|..||||||+|+..|+.++|+.|+.. |+++|..+..|+|+||||+..|..
T Consensus        41 ~LHwa~S~g~~eiv~fLls-q~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~  119 (226)
T KOG4412|consen   41 PLHWACSFGHVEIVYFLLS-QPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRL  119 (226)
T ss_pred             eeeeeeecCchhHHHHHHh-cCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChh
Confidence            3455566677777777775 44555666699999999999999999999999997 999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 020274          214 AVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS  293 (328)
Q Consensus       214 ~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  293 (328)
                      +++++|+++|+.++.+|..|.||||.|+.-|.++++++|+..|+.+|.+|..|+||||.|..-|+.++..+|+++||++.
T Consensus       120 eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~  199 (226)
T KOG4412|consen  120 EIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTD  199 (226)
T ss_pred             hHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhcccee
Confidence            99999999999999999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             CCCCCCCcHHHHHHH
Q 020274          294 RKTKDGKTALDMSLC  308 (328)
Q Consensus       294 ~~d~~G~TpL~~A~~  308 (328)
                      ..|++| ||+..|+-
T Consensus       200 ~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  200 REDKEG-TALRIACN  213 (226)
T ss_pred             eccccC-chHHHHHH
Confidence            999999 99888763

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.7e-31  Score=254.69  Aligned_cols=185  Identities=28%  Similarity=0.367  Sum_probs=103.4

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCC--------------
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKD--------------  199 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~--------------  199 (328)
                      ..++.|+..|..+.++.|++.|++++..  +..|.||||+|+..|+.+++++|+++|++++..+..              
T Consensus         4 ~~L~~A~~~g~~~iv~~Ll~~g~~~n~~--~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~   81 (413)
T PHA02875          4 VALCDAILFGELDIARRLLDIGINPNFE--IYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV   81 (413)
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence            4566666666666666666666665543  445666666666666666666666666666555444              


Q ss_pred             --------------------CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCc
Q 020274          200 --------------------GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV  259 (328)
Q Consensus       200 --------------------g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~i  259 (328)
                                          |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++
T Consensus        82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~  161 (413)
T PHA02875         82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL  161 (413)
T ss_pred             HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Confidence                                445555555555555555555555555555555555555555555555555555555555


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHcCCCCChHHHHHHHhh
Q 020274          260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGK-TALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       260 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~-TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      +.+|..|.||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..|+    .+++++|..
T Consensus       162 ~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~----~~iv~~Ll~  223 (413)
T PHA02875        162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNK----IDIVRLFIK  223 (413)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCC----HHHHHHHHH
Confidence            55555555555555555555555555555555555554442 44555555554    455555444

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=4.9e-32  Score=257.34  Aligned_cols=186  Identities=27%  Similarity=0.338  Sum_probs=172.9

Q ss_pred             cHHHHHHHHhhChHHHHHHHhc-CCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccC-CCCCcHHHHHHHc
Q 020274          133 EEDLLKEVEQLLEPEEREILNQ-NATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD-KDGLTALHKAIIG  210 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~-g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d-~~g~t~L~~A~~~  210 (328)
                      ...++.|++.|..+.++.+++. |.+++..  |.+|.|+||+|+.+++++++++|+++|+++|... .-+.||||+|+++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~--D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNP--DREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCC--CcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc
Confidence            4568899999999999999998 6666544  6799999999999999999999999999999998 4589999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020274          211 KKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA  290 (328)
Q Consensus       211 g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  290 (328)
                      |+..+|.+|+++||+|+.+|..|.+|||.|++.|+..+|-+||.+|++++.+|.+|+||||+|+.+|....++.||+-|+
T Consensus       123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a  202 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGA  202 (600)
T ss_pred             CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888999999999


Q ss_pred             CCCCCC-CCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          291 DKSRKT-KDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       291 d~~~~d-~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      .+..+| ..|.||||+|+..|+    ..++++|++
T Consensus       203 ~~~~~d~~~g~TpLHwa~~~gN----~~~v~Ll~~  233 (600)
T KOG0509|consen  203 SLLLTDDNHGNTPLHWAVVGGN----LTAVKLLLE  233 (600)
T ss_pred             cccccccccCCchHHHHHhcCC----cceEehhhh
Confidence            999998 889999999999998    666664443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.3e-30  Score=227.25  Aligned_cols=177  Identities=19%  Similarity=0.213  Sum_probs=159.7

Q ss_pred             cccccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhC--CHHHHHHHHHCCCCCCccC-CCCCcHHH
Q 020274          129 ISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSM--QIRYMDMLLDGGLDIDSVD-KDGLTALH  205 (328)
Q Consensus       129 ~~~~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~gadi~~~d-~~g~t~L~  205 (328)
                      .+.+...++.|+..+..+.++.++...     ...+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~~-----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh   92 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKFV-----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALH   92 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHhh-----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHH
Confidence            455677899999999999999998752     334778999999999865  8999999999999999997 47999999


Q ss_pred             HHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH--cCCHHHHHHHHhCCCCccccCCCCCcHHHH-HHHcCCH
Q 020274          206 KAIIG---KKEAVISHLLRKGANPHVKDGDGATPLHYAVQ--VGAMQSVKLLIKYNVDVNVADNEGWTPLHI-AIQSRNR  279 (328)
Q Consensus       206 ~A~~~---g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~--~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~-A~~~g~~  279 (328)
                      +|+..   ++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|+++|++++.+|..|.||||. |+..++.
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~  172 (209)
T PHA02859         93 HYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDK  172 (209)
T ss_pred             HHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCH
Confidence            98763   47999999999999999999999999999886  468999999999999999999999999995 5678899


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 020274          280 DIAKVLLINGADKSRKTKDGKTALDMSLCYG  310 (328)
Q Consensus       280 ~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g  310 (328)
                      +++++|+++|++++.+|..|+|||++|+.++
T Consensus       173 ~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        173 KIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            9999999999999999999999999998765

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=5.1e-30  Score=247.44  Aligned_cols=179  Identities=27%  Similarity=0.332  Sum_probs=131.0

Q ss_pred             cccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCC-------------------
Q 020274          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGL-------------------  191 (328)
Q Consensus       131 ~~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-------------------  191 (328)
                      .....++.|+..|..+.++.|++.|++++.  .+..|.||||.|+..|+.+++++|+++|+                   
T Consensus        34 ~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~--~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll  111 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVELFIKHGADINH--INTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTIL  111 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHH
Confidence            345667777777777777777777766654  35567777777777777777777776554                   


Q ss_pred             ----CCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCC
Q 020274          192 ----DIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGW  267 (328)
Q Consensus       192 ----di~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~  267 (328)
                          +++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus       112 ~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~  191 (434)
T PHA02874        112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGE  191 (434)
T ss_pred             HCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCC
Confidence                3455666677777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 020274          268 TPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR  311 (328)
Q Consensus       268 TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~  311 (328)
                      ||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++
T Consensus       192 tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~  235 (434)
T PHA02874        192 SPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR  235 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh
Confidence            77777777777777777777777777777777777777777654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.1e-30  Score=250.98  Aligned_cols=185  Identities=30%  Similarity=0.346  Sum_probs=159.0

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCH---------------------------------
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQI---------------------------------  180 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~---------------------------------  180 (328)
                      ..|+.|+..+..+.++.|++.|++++.  .+..|+||||+||..|+.                                 
T Consensus        39 tPLh~A~~~g~~e~vk~Ll~~gadvn~--~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei  116 (477)
T PHA02878         39 IPLHQAVEARNLDVVKSLLTRGHNVNQ--PDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEI  116 (477)
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHH
Confidence            468889999999999999999887765  477899999999876543                                 


Q ss_pred             -------------------------------HHHHHHHHCCCCCCccCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q 020274          181 -------------------------------RYMDMLLDGGLDIDSVDKD-GLTALHKAIIGKKEAVISHLLRKGANPHV  228 (328)
Q Consensus       181 -------------------------------~~v~~Ll~~gadi~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~  228 (328)
                                                     +++++|+++|++++.++.. |.||||+|+..|+.+++++|+++|++++.
T Consensus       117 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~  196 (477)
T PHA02878        117 FKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI  196 (477)
T ss_pred             HHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC
Confidence                                           2677777888889988888 99999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCCCC-CCCcHHHHH
Q 020274          229 KDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS-RNRDIAKVLLINGADKSRKTK-DGKTALDMS  306 (328)
Q Consensus       229 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~gad~~~~d~-~G~TpL~~A  306 (328)
                      ++..|.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++.++. .|.||||+|
T Consensus       197 ~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        197 PDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS  276 (477)
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH
Confidence            999999999999999999999999999999999999999999999975 689999999999999998876 789999998


Q ss_pred             HHcCCCCChHHHHHHHhhCC
Q 020274          307 LCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       307 ~~~g~~~~~~~i~~lL~~~~  326 (328)
                      +  ++    .+++++|....
T Consensus       277 ~--~~----~~~v~~Ll~~g  290 (477)
T PHA02878        277 I--KS----ERKLKLLLEYG  290 (477)
T ss_pred             c--cC----HHHHHHHHHCC
Confidence            3  33    67888887654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=4.7e-30  Score=250.51  Aligned_cols=188  Identities=29%  Similarity=0.386  Sum_probs=168.3

Q ss_pred             cHHHHHHH--HhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhC--CHHHHHHHHHCCCCCCccCCCCCcHHHHHH
Q 020274          133 EEDLLKEV--EQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSM--QIRYMDMLLDGGLDIDSVDKDGLTALHKAI  208 (328)
Q Consensus       133 ~~~l~~ai--~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~  208 (328)
                      ...++.|+  ..+..+.++.+++.|++++..  +..|.||||+|+..|  +.+++++|+++|++++.++..|.||||+|+
T Consensus       107 ~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~  184 (480)
T PHA03100        107 ITPLLYAISKKSNSYSIVEYLLDNGANVNIK--NSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAV  184 (480)
T ss_pred             CchhhHHHhcccChHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHH
Confidence            45678888  888889999999988876654  678899999999999  899999999999999999889999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCC------ChHHHHHHHcCC--HHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHH
Q 020274          209 IGKKEAVISHLLRKGANPHVKDGDG------ATPLHYAVQVGA--MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRD  280 (328)
Q Consensus       209 ~~g~~~~v~~Ll~~g~d~~~~d~~g------~tpLh~A~~~g~--~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~  280 (328)
                      ..|+.+++++|+++|++++..+..|      .||||.|+..|+  .+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus       185 ~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~  264 (480)
T PHA03100        185 EKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPE  264 (480)
T ss_pred             HhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            9999999999999999999888888      889999999999  99999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          281 IAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       281 iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      ++++|+++|+|++.++..|.||+++|+..++    .+++++|....
T Consensus       265 iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~----~~iv~~Ll~~g  306 (480)
T PHA03100        265 FVKYLLDLGANPNLVNKYGDTPLHIAILNNN----KEIFKLLLNNG  306 (480)
T ss_pred             HHHHHHHcCCCCCccCCCCCcHHHHHHHhCC----HHHHHHHHhcC
Confidence            9999999999999999999999999999988    88888887654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=8.5e-30  Score=244.33  Aligned_cols=190  Identities=23%  Similarity=0.291  Sum_probs=169.6

Q ss_pred             ccccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHH
Q 020274          130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAII  209 (328)
Q Consensus       130 ~~~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~  209 (328)
                      ......++.|+..|..+.++.+++.|...+. ..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus        66 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~  144 (413)
T PHA02875         66 PDIESELHDAVEEGDVKAVEELLDLGKFADD-VFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVM  144 (413)
T ss_pred             CCcccHHHHHHHCCCHHHHHHHHHcCCcccc-cccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Confidence            3456789999999999999999998876542 235679999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCC-cHHHHHHHcCCHHHHHHHHHc
Q 020274          210 GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGW-TPLHIAIQSRNRDIAKVLLIN  288 (328)
Q Consensus       210 ~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~-TpL~~A~~~g~~~iv~~Ll~~  288 (328)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|. ||+|+|+..|+.+++++|+++
T Consensus       145 ~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~  224 (413)
T PHA02875        145 MGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR  224 (413)
T ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999988875 899999999999999999999


Q ss_pred             CCCCCCC---CCCCCcHHHHHHHcCCCCChHHHHHH
Q 020274          289 GADKSRK---TKDGKTALDMSLCYGRDFKSYDLAKL  321 (328)
Q Consensus       289 gad~~~~---d~~G~TpL~~A~~~g~~~~~~~i~~l  321 (328)
                      |+|++..   +..|.||+++++.+..... .+.++.
T Consensus       225 gad~n~~~~~~~~~~t~l~~~~~~~~~~~-~~~~~~  259 (413)
T PHA02875        225 GADCNIMFMIEGEECTILDMICNMCTNLE-SEAIDA  259 (413)
T ss_pred             CcCcchHhhcCCCchHHHHHHHhhcCCcc-cHHHHH
Confidence            9999876   6778999999886654322 344443

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=7.5e-30  Score=231.33  Aligned_cols=171  Identities=22%  Similarity=0.252  Sum_probs=152.4

Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCC
Q 020274          145 EPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGA  224 (328)
Q Consensus       145 ~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~  224 (328)
                      .+.++-+++.+..    ..+..|+||||+|+..|+.+++++|+++|++++..+  |.||||+|+..|+.+++++|+++|+
T Consensus        12 ~~~~~~Lis~~a~----~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Ga   85 (284)
T PHA02791         12 KQLKSFLSSKDAF----KADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGM   85 (284)
T ss_pred             HHHHHHHHhCCCC----CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCC
Confidence            3444555555543    348889999999999999999999999999998764  6899999999999999999999999


Q ss_pred             CCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcH
Q 020274          225 NPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGW-TPLHIAIQSRNRDIAKVLLINGADKSRKT-KDGKTA  302 (328)
Q Consensus       225 d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~-TpL~~A~~~g~~~iv~~Ll~~gad~~~~d-~~G~Tp  302 (328)
                      +++.+|..|+||||+|+..|+.+++++|+++|++++.++..|+ ||||+|+..|+.+++++|+++|.+.  .+ ..|.||
T Consensus        86 dvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--~d~~~g~Tp  163 (284)
T PHA02791         86 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--FDLAILLSC  163 (284)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc--cccccCccH
Confidence            9999999999999999999999999999999999999998885 8999999999999999999998654  23 358999


Q ss_pred             HHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          303 LDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       303 L~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      ||+|+.+|+    .+++++|.....
T Consensus       164 Lh~Aa~~g~----~eiv~lLL~~gA  184 (284)
T PHA02791        164 IHITIKNGH----VDMMILLLDYMT  184 (284)
T ss_pred             HHHHHHcCC----HHHHHHHHHCCC
Confidence            999999999    999999987653

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.5e-29  Score=242.67  Aligned_cols=190  Identities=25%  Similarity=0.326  Sum_probs=156.0

Q ss_pred             ccHHHHHHHHhhChHHHHHHHhcCCCCC---------------------CCCCCCCCCcHHHHHHHhCCHHHHHHHHHCC
Q 020274          132 YEEDLLKEVEQLLEPEEREILNQNATPN---------------------LGKISTAKWRPLQTLTLSMQIRYMDMLLDGG  190 (328)
Q Consensus       132 ~~~~l~~ai~~~~~~~v~~lL~~g~~~~---------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  190 (328)
                      ....++.|+..+..+.++.|++.|.++.                     +...+..|.||||+|+..|+.+++++|+++|
T Consensus        68 ~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~g  147 (434)
T PHA02874         68 IPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG  147 (434)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCC
Confidence            4457888888888888888888776542                     3345677888888888888888888888888


Q ss_pred             CCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHH
Q 020274          191 LDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPL  270 (328)
Q Consensus       191 adi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL  270 (328)
                      ++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.|||
T Consensus       148 ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL  227 (434)
T PHA02874        148 ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPL  227 (434)
T ss_pred             CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          271 HIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       271 ~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      |+|+..+. .++++|+ .|++++.+|..|+||||+|+..+.   ..+++++|....
T Consensus       228 ~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~---~~~iv~~Ll~~g  278 (434)
T PHA02874        228 HNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPC---DIDIIDILLYHK  278 (434)
T ss_pred             HHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCC---cHHHHHHHHHCc
Confidence            88888765 4566655 688888888888888888887763   278888887654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.6e-29  Score=246.70  Aligned_cols=189  Identities=26%  Similarity=0.306  Sum_probs=178.5

Q ss_pred             cHHHHH-----HHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHH--HhCCHHHHHHHHHCCCCCCccCCCCCcHHH
Q 020274          133 EEDLLK-----EVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLT--LSMQIRYMDMLLDGGLDIDSVDKDGLTALH  205 (328)
Q Consensus       133 ~~~l~~-----ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~--~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~  205 (328)
                      ...++.     |+..+..+.++.+++.|++++  ..+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||
T Consensus        69 ~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~--~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~  146 (480)
T PHA03100         69 STPLHYLSNIKYNLTDVKEIVKLLLEYGANVN--APDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLH  146 (480)
T ss_pred             cCHHHHHHHHHHHhhchHHHHHHHHHCCCCCC--CCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence            345667     899999999999999999884  45888999999999  999999999999999999999999999999


Q ss_pred             HHHHcC--CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCC------CcHHHHHHHcC
Q 020274          206 KAIIGK--KEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEG------WTPLHIAIQSR  277 (328)
Q Consensus       206 ~A~~~g--~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g------~TpL~~A~~~g  277 (328)
                      +|+..|  +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|      .||||+|+..|
T Consensus       147 ~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~  226 (480)
T PHA03100        147 LYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYN  226 (480)
T ss_pred             HHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhC
Confidence            999999  9999999999999999999999999999999999999999999999999999988      89999999999


Q ss_pred             C--HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          278 N--RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       278 ~--~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      +  .+++++|+++|++++.+|..|.||||+|+..|+    .+++++|...+.
T Consensus       227 ~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~----~~iv~~Ll~~ga  274 (480)
T PHA03100        227 EITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN----PEFVKYLLDLGA  274 (480)
T ss_pred             cCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHcCC
Confidence            9  999999999999999999999999999999998    999999987654

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=1.6e-29  Score=243.85  Aligned_cols=165  Identities=23%  Similarity=0.242  Sum_probs=96.9

Q ss_pred             hChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC--CHHHHHHHH
Q 020274          143 LLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK--KEAVISHLL  220 (328)
Q Consensus       143 ~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g--~~~~v~~Ll  220 (328)
                      ...+.++.+++.|++++.  .+..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..+  ..+++++|+
T Consensus        50 ~~~~iv~~Ll~~Gadvn~--~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl  127 (446)
T PHA02946         50 LDERFVEELLHRGYSPNE--TDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLV  127 (446)
T ss_pred             CCHHHHHHHHHCcCCCCc--cCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHH
Confidence            344566666666666554  3566777777777777777777777777777777777777777766544  356666666


Q ss_pred             HCCCCCCC-CCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCCCC
Q 020274          221 RKGANPHV-KDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR--NRDIAKVLLINGADKSRKTK  297 (328)
Q Consensus       221 ~~g~d~~~-~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g--~~~iv~~Ll~~gad~~~~d~  297 (328)
                      ++|++++. .+..|.|||| |+..++.+++++|+++|++++.+|..|+||||+|+..+  +.+++++|+++|++++.+|.
T Consensus       128 ~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~  206 (446)
T PHA02946        128 QYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDH  206 (446)
T ss_pred             HcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCC
Confidence            66666663 3555555554 33445555555555555555555555555555554432  23455555555555555555


Q ss_pred             CCCcHHHHHHHcC
Q 020274          298 DGKTALDMSLCYG  310 (328)
Q Consensus       298 ~G~TpL~~A~~~g  310 (328)
                      .|.||||+|+..|
T Consensus       207 ~G~TpLH~Aa~~~  219 (446)
T PHA02946        207 DGNTPLHIVCSKT  219 (446)
T ss_pred             CCCCHHHHHHHcC
Confidence            5555555555443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=5.3e-29  Score=243.15  Aligned_cols=163  Identities=27%  Similarity=0.316  Sum_probs=152.1

Q ss_pred             hHHHHHHHhcCCCCCCCCCCCC-CCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q 020274          145 EPEEREILNQNATPNLGKISTA-KWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKG  223 (328)
Q Consensus       145 ~~~v~~lL~~g~~~~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g  223 (328)
                      .+.++.+++.|++++..  +.. |+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|
T Consensus       147 ~~iv~~Ll~~gadin~~--~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g  224 (477)
T PHA02878        147 AEITKLLLSYGADINMK--DRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENG  224 (477)
T ss_pred             HHHHHHHHHcCCCCCcc--CCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            34778889999887754  566 999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCChHHHHHHHc-CCHHHHHHHHhCCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 020274          224 ANPHVKDGDGATPLHYAVQV-GAMQSVKLLIKYNVDVNVADN-EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKT  301 (328)
Q Consensus       224 ~d~~~~d~~g~tpLh~A~~~-g~~~iv~~Ll~~ga~in~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~T  301 (328)
                      ++++.+|..|.||||+|+.. ++.+++++|+++|++++.++. .|.||||+|  .++.+++++|+++|+|++.+|..|.|
T Consensus       225 a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~T  302 (477)
T PHA02878        225 ASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLT  302 (477)
T ss_pred             CCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            99999999999999999976 789999999999999999986 799999999  57899999999999999999999999


Q ss_pred             HHHHHHHcCC
Q 020274          302 ALDMSLCYGR  311 (328)
Q Consensus       302 pL~~A~~~g~  311 (328)
                      |||+|+..+.
T Consensus       303 pL~~A~~~~~  312 (477)
T PHA02878        303 PLSSAVKQYL  312 (477)
T ss_pred             HHHHHHHHcC
Confidence            9999998653

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.1e-28  Score=241.84  Aligned_cols=176  Identities=26%  Similarity=0.365  Sum_probs=152.2

Q ss_pred             ChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCC-CccCCCCCcHHHHHHHc--CCHHHHH
Q 020274          144 LEPEEREILNQNATPNLGKISTAKWRPLQTLTLS---MQIRYMDMLLDGGLDI-DSVDKDGLTALHKAIIG--KKEAVIS  217 (328)
Q Consensus       144 ~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~gadi-~~~d~~g~t~L~~A~~~--g~~~~v~  217 (328)
                      ..+.++.|++.|++++..  +..|+||||.|+..   ++.+++++|+++|+++ +.++..|.||||+|+..  ++.++++
T Consensus        87 ~~~iv~~Ll~~Gadin~~--d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~  164 (494)
T PHA02989         87 IKKIVKLLLKFGADINLK--TFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIK  164 (494)
T ss_pred             HHHHHHHHHHCCCCCCCC--CCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHH
Confidence            356788889999887765  67899999988766   6789999999999999 78899999999998754  6889999


Q ss_pred             HHHHCCCCCCC-CCCCCChHHHHHHHcC----CHHHHHHHHhCCCCccc-------------------------------
Q 020274          218 HLLRKGANPHV-KDGDGATPLHYAVQVG----AMQSVKLLIKYNVDVNV-------------------------------  261 (328)
Q Consensus       218 ~Ll~~g~d~~~-~d~~g~tpLh~A~~~g----~~~iv~~Ll~~ga~in~-------------------------------  261 (328)
                      +|+++|++++. .+..|.||||+|+..+    +.+++++|+++|++++.                               
T Consensus       165 ~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~  244 (494)
T PHA02989        165 ILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFIL  244 (494)
T ss_pred             HHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHH
Confidence            99999999987 6778999999987654    88999999988877653                               


Q ss_pred             -------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          262 -------ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       262 -------~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                             +|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..|+    .+++++|...
T Consensus       245 ~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~----~~iv~~LL~~  311 (494)
T PHA02989        245 KYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGN----IDMLNRILQL  311 (494)
T ss_pred             hCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC----HHHHHHHHhc
Confidence                   45569999999999999999999999999999999999999999999998    8888876653

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=8.4e-29  Score=247.68  Aligned_cols=188  Identities=24%  Similarity=0.279  Sum_probs=157.7

Q ss_pred             HHHHHHHh--hChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCC--HHHHHHHHHCCCCCCccCCCCCcHHHHH---
Q 020274          135 DLLKEVEQ--LLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQ--IRYMDMLLDGGLDIDSVDKDGLTALHKA---  207 (328)
Q Consensus       135 ~l~~ai~~--~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~--~~~v~~Ll~~gadi~~~d~~g~t~L~~A---  207 (328)
                      .++.++..  +..+.++.|++.|++++..  +..|+||||+|+..|+  .++|++|+++|+++|.++..|+||||+|   
T Consensus       180 pLH~A~~n~~~~~eIVklLLe~GADVN~k--D~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~  257 (764)
T PHA02716        180 ILHAYLGNMYVDIDILEWLCNNGVNVNLQ--NNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIIN  257 (764)
T ss_pred             HHHHHHHhccCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence            44444433  4568899999999887764  7789999999999995  5899999999999999999999999975   


Q ss_pred             ----------------------------------HHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH--cCCHHHHHH
Q 020274          208 ----------------------------------IIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ--VGAMQSVKL  251 (328)
Q Consensus       208 ----------------------------------~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~--~g~~~iv~~  251 (328)
                                                        +..|+.+++++|+++|++++.+|..|+||||+|+.  .++.+++++
T Consensus       258 a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVkl  337 (764)
T PHA02716        258 IDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKL  337 (764)
T ss_pred             hhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHH
Confidence                                              34577889999999999999999999999999865  467899999


Q ss_pred             HHhCCCCccccCCCCCcHHHHHHH--------------cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHH
Q 020274          252 LIKYNVDVNVADNEGWTPLHIAIQ--------------SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYD  317 (328)
Q Consensus       252 Ll~~ga~in~~d~~g~TpL~~A~~--------------~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~  317 (328)
                      |+++|++++.+|..|+||||+|+.              .++.+++++|+++|++++.+|..|.||||.++.........+
T Consensus       338 LLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~d  417 (764)
T PHA02716        338 LHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYD  417 (764)
T ss_pred             HHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHH
Confidence            999999999999999999999875              368999999999999999999999999995443322223488


Q ss_pred             HHHHHhh
Q 020274          318 LAKLLKI  324 (328)
Q Consensus       318 i~~lL~~  324 (328)
                      ++++|..
T Consensus       418 IvklLis  424 (764)
T PHA02716        418 IIDCLIS  424 (764)
T ss_pred             HHHHHHh
Confidence            8888765

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=2.6e-28  Score=235.58  Aligned_cols=186  Identities=23%  Similarity=0.285  Sum_probs=166.4

Q ss_pred             ccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhC--CHHHHHHHHHCCCCCCc-cCCCCCcHHHHHH
Q 020274          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSM--QIRYMDMLLDGGLDIDS-VDKDGLTALHKAI  208 (328)
Q Consensus       132 ~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~gadi~~-~d~~g~t~L~~A~  208 (328)
                      ....|+.|+..+..+.++.|++.|++++..  +..|+||||+|+..+  ..+++++|+++|++++. .+..|.|||| ||
T Consensus        72 G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~--d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa  148 (446)
T PHA02946         72 GNYPLHIASKINNNRIVAMLLTHGADPNAC--DKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-AC  148 (446)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCcCCCCCC--CCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HH
Confidence            345789999999999999999999888754  889999999998876  48999999999999995 6889999997 66


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHhCCCCccccCCCCCcHHHHHHHcC--CHHHHHH
Q 020274          209 IGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG--AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR--NRDIAKV  284 (328)
Q Consensus       209 ~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g--~~~iv~~  284 (328)
                      ..++.+++++|++.|++++.+|..|+||||+|+..+  +.+++++|+++|++++.+|..|.||||+|+..+  +.+++++
T Consensus       149 ~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~l  228 (446)
T PHA02946        149 TDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINL  228 (446)
T ss_pred             HCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHH
Confidence            779999999999999999999999999999998765  468999999999999999999999999999986  8899999


Q ss_pred             HHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          285 LLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       285 Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      |+ .|++++.+|..|.||||+|+..++.   .+++++|..
T Consensus       229 Ll-~gadin~~d~~G~TpLh~A~~~~~~---~~~~~~Ll~  264 (446)
T PHA02946        229 LL-PSTDVNKQNKFGDSPLTLLIKTLSP---AHLINKLLS  264 (446)
T ss_pred             HH-cCCCCCCCCCCCCCHHHHHHHhCCh---HHHHHHHHh
Confidence            98 4999999999999999999998862   467766654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=2.9e-28  Score=238.57  Aligned_cols=177  Identities=21%  Similarity=0.255  Sum_probs=156.6

Q ss_pred             hChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhC---CHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC---HHHH
Q 020274          143 LLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSM---QIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK---EAVI  216 (328)
Q Consensus       143 ~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~---~~~v  216 (328)
                      +..+.++.|++.|++++..  +..|+||||+|+..+   +.+++++|+++|++++.++..|.||||+|+..++   .+++
T Consensus        87 ~~~~iv~~Ll~~GadiN~~--d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv  164 (489)
T PHA02798         87 HMLDIVKILIENGADINKK--NSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEII  164 (489)
T ss_pred             hHHHHHHHHHHCCCCCCCC--CCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHH
Confidence            4478889999999987764  778999999999986   7899999999999999999999999999999887   9999


Q ss_pred             HHHHHCCCCCCCCC-CCCChHHHHHHHc----CCHHHHHHHHhCCCCc--------------------------------
Q 020274          217 SHLLRKGANPHVKD-GDGATPLHYAVQV----GAMQSVKLLIKYNVDV--------------------------------  259 (328)
Q Consensus       217 ~~Ll~~g~d~~~~d-~~g~tpLh~A~~~----g~~~iv~~Ll~~ga~i--------------------------------  259 (328)
                      ++|+++|++++.++ ..|.||||.++..    ++.+++++|+++|+++                                
T Consensus       165 ~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~  244 (489)
T PHA02798        165 KLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDF  244 (489)
T ss_pred             HHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHH
Confidence            99999999999875 5789999998764    4788888888877644                                


Q ss_pred             -------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          260 -------NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       260 -------n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                             |.+|..|.||||+|+..|+.+++++|+++|||++.++..|+|||++|+..++    .++++.|...
T Consensus       245 l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~----~~iv~~lL~~  313 (489)
T PHA02798        245 IFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENES----KFIFNSILNK  313 (489)
T ss_pred             HHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCc----HHHHHHHHcc
Confidence                   4467789999999999999999999999999999999999999999999998    8888876654

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=2.1e-29  Score=231.10  Aligned_cols=188  Identities=23%  Similarity=0.300  Sum_probs=170.1

Q ss_pred             HHHHHHHHhhChHHHHHHHh-cCCCC------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHH
Q 020274          134 EDLLKEVEQLLEPEEREILN-QNATP------NLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHK  206 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~-~g~~~------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~  206 (328)
                      ..++.+++.|..+.++.+++ -++++      .+......|-+||-.|+..|++++|+.|+.+|+++|.......|||..
T Consensus        44 tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLra  123 (615)
T KOG0508|consen   44 TPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRA  123 (615)
T ss_pred             CceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHH
Confidence            34566779999999999998 33333      333445689999999999999999999999999999988888999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 020274          207 AIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL  286 (328)
Q Consensus       207 A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll  286 (328)
                      ||.-|+.++|++|+++|+|++..|+.|.|+||+|+..|+.+|+++|++.|+|+|.++..|+|+||.|+..|+++++++|+
T Consensus       124 ACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll  203 (615)
T KOG0508|consen  124 ACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLL  203 (615)
T ss_pred             HHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          287 INGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       287 ~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      .+|+.+. +|..|.|||..|+..|+    .+++++|...+
T Consensus       204 ~~ga~i~-~d~~GmtPL~~Aa~tG~----~~iVe~L~~~~  238 (615)
T KOG0508|consen  204 KHGAKID-VDGHGMTPLLLAAVTGH----TDIVERLLQCE  238 (615)
T ss_pred             hCCceee-ecCCCCchHHHHhhhcc----hHHHHHHhcCC
Confidence            9999985 45569999999999999    88998887543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=3e-28  Score=243.72  Aligned_cols=186  Identities=19%  Similarity=0.225  Sum_probs=161.1

Q ss_pred             HhhChHHHHHHHhcC-CCCCCCCCCCCCCcHHHHHHHh--CCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC--HHH
Q 020274          141 EQLLEPEEREILNQN-ATPNLGKISTAKWRPLQTLTLS--MQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK--EAV  215 (328)
Q Consensus       141 ~~~~~~~v~~lL~~g-~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~--~~~  215 (328)
                      ..+..+.++.|++.| ++++... +..|.||||.|+..  ++.+++++|+++|++++.+|..|.||||+|+..|+  .++
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~-d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eI  229 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVC-KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASV  229 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCccccc-CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHH
Confidence            357778999999999 7776532 67899999998754  67899999999999999999999999999999985  589


Q ss_pred             HHHHHHCCCCCCCCCCCCChHHHHH-------------------------------------HHcCCHHHHHHHHhCCCC
Q 020274          216 ISHLLRKGANPHVKDGDGATPLHYA-------------------------------------VQVGAMQSVKLLIKYNVD  258 (328)
Q Consensus       216 v~~Ll~~g~d~~~~d~~g~tpLh~A-------------------------------------~~~g~~~iv~~Ll~~ga~  258 (328)
                      |++|+++|++++.++..|+||||.|                                     +..|+.+++++|+++|++
T Consensus       230 VklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd  309 (764)
T PHA02716        230 IKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK  309 (764)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc
Confidence            9999999999999999999999975                                     345788999999999999


Q ss_pred             ccccCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC----------CCCChHHHHHHHhhCC
Q 020274          259 VNVADNEGWTPLHIAIQ--SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG----------RDFKSYDLAKLLKILP  326 (328)
Q Consensus       259 in~~d~~g~TpL~~A~~--~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g----------~~~~~~~i~~lL~~~~  326 (328)
                      ++.+|..|+||||+|+.  .++.+++++|+++|++++.+|..|+||||+|+...          ......+++++|....
T Consensus       310 IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G  389 (764)
T PHA02716        310 LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG  389 (764)
T ss_pred             eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC
Confidence            99999999999999875  46899999999999999999999999999987531          0112489999998764


Q ss_pred             C
Q 020274          327 V  327 (328)
Q Consensus       327 ~  327 (328)
                      .
T Consensus       390 A  390 (764)
T PHA02716        390 A  390 (764)
T ss_pred             C
Confidence            3

>PHA03095 ankyrin-like protein; Provisional

Probab=99.96  E-value=5.4e-28  Score=235.39  Aligned_cols=185  Identities=24%  Similarity=0.296  Sum_probs=142.4

Q ss_pred             HHHHHH--HhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhC--CHHHHHHHHHCCCCCCccCCCCCcHHHHHHHc
Q 020274          135 DLLKEV--EQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSM--QIRYMDMLLDGGLDIDSVDKDGLTALHKAIIG  210 (328)
Q Consensus       135 ~l~~ai--~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~  210 (328)
                      .++.++  ..+..+.++.|++.|++++..  +..|.||||+|+..+  +.+++++|+++|++++..+..|.||||+|+..
T Consensus       120 pLh~a~~~~~~~~~iv~~Ll~~gad~~~~--d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~  197 (471)
T PHA03095        120 PLHVYLSGFNINPKVIRLLLRKGADVNAL--DLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQS  197 (471)
T ss_pred             HHHHHhhCCcCCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHH
Confidence            344444  233455666666666655432  555666666666554  45666666666666666666677777766643


Q ss_pred             --CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH--HHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 020274          211 --KKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAM--QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL  286 (328)
Q Consensus       211 --g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~--~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll  286 (328)
                        +...+++.|+++|++++.+|..|+||||+|+..|+.  .+++.|+..|+++|.+|..|+||||+|+..|+.+++++|+
T Consensus       198 ~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL  277 (471)
T PHA03095        198 FKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLI  277 (471)
T ss_pred             CCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence              566778888888888888888888888888888864  5788899999999999999999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          287 INGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       287 ~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      ++|||++.++..|+||||+|+.+|+    .+++++|...
T Consensus       278 ~~gad~n~~~~~g~tpl~~A~~~~~----~~~v~~LL~~  312 (471)
T PHA03095        278 ALGADINAVSSDGNTPLSLMVRNNN----GRAVRAALAK  312 (471)
T ss_pred             HcCCCCcccCCCCCCHHHHHHHhCC----HHHHHHHHHh
Confidence            9999999999999999999999998    8888877653

>PHA02795 ankyrin-like protein; Provisional

Probab=99.96  E-value=6.8e-28  Score=227.20  Aligned_cols=186  Identities=22%  Similarity=0.188  Sum_probs=161.4

Q ss_pred             HHHhhChHHHHHHHhcCCCCCCC----CCCCCCCcHHHHHHH--hCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC
Q 020274          139 EVEQLLEPEEREILNQNATPNLG----KISTAKWRPLQTLTL--SMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       139 ai~~~~~~~v~~lL~~g~~~~~~----~~~~~g~t~L~~A~~--~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~  212 (328)
                      +......+.+.-++.+|.++++-    ..+..++|+||.++.  .|+.++|++|+++||+++..  .+.||||.|+..++
T Consensus        84 ~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~  161 (437)
T PHA02795         84 FAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKE  161 (437)
T ss_pred             HhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCc
Confidence            34445567778888899887711    246679999999999  89999999999999999985  45899999999999


Q ss_pred             HHHHHHHHHCCCCCCCCC------CCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 020274          213 EAVISHLLRKGANPHVKD------GDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL  286 (328)
Q Consensus       213 ~~~v~~Ll~~g~d~~~~d------~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll  286 (328)
                      .+++++|+++|++.....      ..+.|++|.|+..++.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+
T Consensus       162 ~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL  241 (437)
T PHA02795        162 SSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLL  241 (437)
T ss_pred             HHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999998543222      34789999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCcHHHHHHHcCCC----CChHHHHHHHhhCC
Q 020274          287 INGADKSRKTKDGKTALDMSLCYGRD----FKSYDLAKLLKILP  326 (328)
Q Consensus       287 ~~gad~~~~d~~G~TpL~~A~~~g~~----~~~~~i~~lL~~~~  326 (328)
                      ++||+++.++..|.||||+|+..|+.    ....+++++|...+
T Consensus       242 ~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~g  285 (437)
T PHA02795        242 ENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREP  285 (437)
T ss_pred             HCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCC
Confidence            99999999999999999999999852    12368999887665

>PHA03095 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.6e-27  Score=232.03  Aligned_cols=189  Identities=26%  Similarity=0.304  Sum_probs=160.9

Q ss_pred             cHHHHHHHHhh---ChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhC-CHHHHHHHHHCCCCCCccCCCCCcHHHHHH
Q 020274          133 EEDLLKEVEQL---LEPEEREILNQNATPNLGKISTAKWRPLQTLTLSM-QIRYMDMLLDGGLDIDSVDKDGLTALHKAI  208 (328)
Q Consensus       133 ~~~l~~ai~~~---~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~  208 (328)
                      ...++.++..+   ..+.++.+++.|++++..  +..|+||||+|+..| ..+++++|+++|++++.++..|.||||+|+
T Consensus        48 ~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~--~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~  125 (471)
T PHA03095         48 KTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP--ERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYL  125 (471)
T ss_pred             CCHHHHHHHhcCCChHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence            56677888877   888888999999887765  568999999999999 599999999999999999999999999999


Q ss_pred             --HcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC--CHHHHHHHHhCCCCccccCCCCCcHHHHHHHc--CCHHHH
Q 020274          209 --IGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG--AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS--RNRDIA  282 (328)
Q Consensus       209 --~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g--~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~--g~~~iv  282 (328)
                        ..++.+++++|+++|++++.++..|.||||+|+..+  +.+++++|+++|++++..+..|.||||+|+..  ++.+++
T Consensus       126 ~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~  205 (471)
T PHA03095        126 SGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIV  205 (471)
T ss_pred             hCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHH
Confidence              456788999999999999999999999999988765  67899999999999988888999999998875  678899


Q ss_pred             HHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          283 KVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       283 ~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      +.|+++|++++.+|..|+||||+|+..|+.  ...++++|...
T Consensus       206 ~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~--~~~~v~~ll~~  246 (471)
T PHA03095        206 RELIRAGCDPAATDMLGNTPLHSMATGSSC--KRSLVLPLLIA  246 (471)
T ss_pred             HHHHHcCCCCcccCCCCCCHHHHHHhcCCc--hHHHHHHHHHc
Confidence            999999999999999999999999998861  23456555443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=2.6e-28  Score=232.00  Aligned_cols=174  Identities=32%  Similarity=0.378  Sum_probs=162.8

Q ss_pred             HHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHH
Q 020274          135 DLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEA  214 (328)
Q Consensus       135 ~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~  214 (328)
                      .++=|.-....+.++.++++|+++|.-. ..-+.||||+|+++|++.+|.+|+++|||++.+|..|.+|||.|+..|+..
T Consensus        81 lLHWAAiNNrl~v~r~li~~gadvn~~g-G~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~  159 (600)
T KOG0509|consen   81 LLHWAAINNRLDVARYLISHGADVNAIG-GVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTA  159 (600)
T ss_pred             ceeHHHHcCcHHHHHHHHHcCCCccccC-CCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchH
Confidence            3555666778899999999999998764 267899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccC-CCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 020274          215 VISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAKVLLINGADKS  293 (328)
Q Consensus       215 ~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d-~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  293 (328)
                      +|-|||.+|++++.+|..|+||||+|+.+|+...+..||+.|+.++..| ..|.||||+|+..|+..++.+|++.|++.+
T Consensus       160 ~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d  239 (600)
T KOG0509|consen  160 LVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLD  239 (600)
T ss_pred             HHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCccc
Confidence            9999999999999999999999999999999888999999999999998 889999999999999999997778899999


Q ss_pred             CCCCCCCcHHHHHHHc
Q 020274          294 RKTKDGKTALDMSLCY  309 (328)
Q Consensus       294 ~~d~~G~TpL~~A~~~  309 (328)
                      .+|.+|.||+++|...
T Consensus       240 ~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  240 KTNTNGKTPFDLAQER  255 (600)
T ss_pred             ccccCCCCHHHHHHHh
Confidence            9999999999999765

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.95  E-value=4.8e-27  Score=238.76  Aligned_cols=125  Identities=30%  Similarity=0.351  Sum_probs=75.2

Q ss_pred             CCCCCcHHHHHHHcCCH-HHHHHHHHCCCCCCCCCCCCChHHHHHHHcC-CHHHHHHHHhCCCCccccCCCCCcHHHHHH
Q 020274          197 DKDGLTALHKAIIGKKE-AVISHLLRKGANPHVKDGDGATPLHYAVQVG-AMQSVKLLIKYNVDVNVADNEGWTPLHIAI  274 (328)
Q Consensus       197 d~~g~t~L~~A~~~g~~-~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g-~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~  274 (328)
                      +..|.||||+|+..++. .++++|++.|++++.+|..|.||||+|+..| ..+++++|+..|++++..+..|.||||+|+
T Consensus       270 d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~  349 (682)
T PHA02876        270 DDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAS  349 (682)
T ss_pred             CCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHH
Confidence            33455555555555553 3555566666666666666666666666655 355566666666666655555666666655


Q ss_pred             Hc-CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          275 QS-RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       275 ~~-g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      .. ++.+++++|+++|++++.+|..|+||||+|+..|+    .+++++|...
T Consensus       350 ~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~----~~iv~~Ll~~  397 (682)
T PHA02876        350 TLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNN----VVIINTLLDY  397 (682)
T ss_pred             HhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCC----HHHHHHHHHC
Confidence            53 34566666666666666666666666666666666    6666666544

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.5e-27  Score=232.00  Aligned_cols=179  Identities=23%  Similarity=0.274  Sum_probs=159.3

Q ss_pred             hChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHh-----CCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC---CHH
Q 020274          143 LLEPEEREILNQNATPNLGKISTAKWRPLQTLTLS-----MQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK---KEA  214 (328)
Q Consensus       143 ~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~-----g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g---~~~  214 (328)
                      +..+.++.|++.|++++..  +..|.||||.|+..     +..+++++|+++|+++|.++..|.||||+|+..+   +.+
T Consensus        49 ~~~~iv~~Ll~~Gadvn~~--d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~  126 (489)
T PHA02798         49 PSTDIVKLFINLGANVNGL--DNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLE  126 (489)
T ss_pred             CCHHHHHHHHHCCCCCCCC--CCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHH
Confidence            4678899999999988754  78899999999864     6789999999999999999999999999999875   789


Q ss_pred             HHHHHHHCCCCCCCCCCCCChHHHHHHHcCC---HHHHHHHHhCCCCccccC-CCCCcHHHHHHHc----CCHHHHHHHH
Q 020274          215 VISHLLRKGANPHVKDGDGATPLHYAVQVGA---MQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQS----RNRDIAKVLL  286 (328)
Q Consensus       215 ~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~---~~iv~~Ll~~ga~in~~d-~~g~TpL~~A~~~----g~~~iv~~Ll  286 (328)
                      ++++|+++|++++.+|..|.||||+|+..++   .+++++|+++|++++..+ ..|.||||.++..    ++.+++++|+
T Consensus       127 iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li  206 (489)
T PHA02798        127 ILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFV  206 (489)
T ss_pred             HHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHH
Confidence            9999999999999999999999999999998   999999999999999885 5789999998764    4788999998


Q ss_pred             HcCCC---------------------------------------CCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          287 INGAD---------------------------------------KSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       287 ~~gad---------------------------------------~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      ++|++                                       ++.+|..|+||||+|+.+|+    .+++++|.....
T Consensus       207 ~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~----~~~v~~LL~~GA  282 (489)
T PHA02798        207 DNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNN----RKIFEYLLQLGG  282 (489)
T ss_pred             HCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCc----HHHHHHHHHcCC
Confidence            88764                                       44567789999999999998    899999987653

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.5e-27  Score=205.72  Aligned_cols=156  Identities=17%  Similarity=0.188  Sum_probs=139.7

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCC-CCCChHHHHH
Q 020274          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK--KEAVISHLLRKGANPHVKD-GDGATPLHYA  240 (328)
Q Consensus       164 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~d~~~~d-~~g~tpLh~A  240 (328)
                      ...++||||.|+..|+.++|+.|++.   ++..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|+||||+|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            45679999999999999999999975   5677889999999999754  8999999999999999997 4899999998


Q ss_pred             HHc---CCHHHHHHHHhCCCCccccCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHH-HHHcCCCCC
Q 020274          241 VQV---GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ--SRNRDIAKVLLINGADKSRKTKDGKTALDM-SLCYGRDFK  314 (328)
Q Consensus       241 ~~~---g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~--~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~-A~~~g~~~~  314 (328)
                      +..   ++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|+++|++++.+|..|.||||. |+..++   
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~---  171 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSD---  171 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCC---
Confidence            764   47999999999999999999999999999986  468999999999999999999999999996 455666   


Q ss_pred             hHHHHHHHhhCC
Q 020274          315 SYDLAKLLKILP  326 (328)
Q Consensus       315 ~~~i~~lL~~~~  326 (328)
                       .+++++|....
T Consensus       172 -~~iv~~Ll~~G  182 (209)
T PHA02859        172 -KKIFDFLTSLG  182 (209)
T ss_pred             -HHHHHHHHHcC
Confidence             89999988654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.1e-27  Score=236.82  Aligned_cols=188  Identities=20%  Similarity=0.119  Sum_probs=151.8

Q ss_pred             cccHHHHHHHHh---hChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHH----HHHHHHHCCCCCCccCCCCCcH
Q 020274          131 KYEEDLLKEVEQ---LLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIR----YMDMLLDGGLDIDSVDKDGLTA  203 (328)
Q Consensus       131 ~~~~~l~~ai~~---~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~gadi~~~d~~g~t~  203 (328)
                      .....|+.|+..   +..+.++.||+.|++++.  .+..|+||||+|+..|+.+    ++++|++.+..++..+.  .++
T Consensus        31 ~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~--~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--~~~  106 (661)
T PHA02917         31 FKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLH--KNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--NIF  106 (661)
T ss_pred             CCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccc--cCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--chH
Confidence            345556665444   678888888888887763  4778889999888888844    55677776543444332  366


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH--HcCCHHHHHHHHhCCCCccccCC---CC-----------C
Q 020274          204 LHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAV--QVGAMQSVKLLIKYNVDVNVADN---EG-----------W  267 (328)
Q Consensus       204 L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~--~~g~~~iv~~Ll~~ga~in~~d~---~g-----------~  267 (328)
                      +|+|+..++.++|++|+++|++++.+|..|+||||.|+  ..|+.+++++|+++|++++.+|.   .|           .
T Consensus       107 ~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~  186 (661)
T PHA02917        107 SYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCG  186 (661)
T ss_pred             HHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccc
Confidence            77788888999999999999999999999999999654  57899999999999999987653   23           5


Q ss_pred             cHHHHHHH-----------cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          268 TPLHIAIQ-----------SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       268 TpL~~A~~-----------~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      ||||+|+.           .++.+++++|+++|||++.+|..|.||||+|+.+|+.  ..+|+++|..
T Consensus       187 t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~--~~eivk~Li~  252 (661)
T PHA02917        187 TVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHI--DIDIVKLLMK  252 (661)
T ss_pred             cHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCC--cHHHHHHHHh
Confidence            99999986           4689999999999999999999999999999999972  2479998854

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.95  E-value=8.6e-27  Score=236.90  Aligned_cols=189  Identities=23%  Similarity=0.258  Sum_probs=135.8

Q ss_pred             cHHHHHHHHhhCh-HHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhC-CHHHHHHHHHCCCCCCccCCCCCcHHHHHHHc
Q 020274          133 EEDLLKEVEQLLE-PEEREILNQNATPNLGKISTAKWRPLQTLTLSM-QIRYMDMLLDGGLDIDSVDKDGLTALHKAIIG  210 (328)
Q Consensus       133 ~~~l~~ai~~~~~-~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g-~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~  210 (328)
                      ...++.|+..+.. ..++.+++.|++++..  +..|.||||+|+..| ..+++++|+..|++++..+..|.||||+|+..
T Consensus       274 ~TpLh~Aa~~~~~~~iv~lLl~~gadin~~--d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~  351 (682)
T PHA02876        274 NTPLHHASQAPSLSRLVPKLLERGADVNAK--NIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL  351 (682)
T ss_pred             CCHHHHHHhCCCHHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHh
Confidence            3456666666654 3455566666665543  566777777777777 47777777777777777777777777777763


Q ss_pred             -CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCC-HHHHHHHHHc
Q 020274          211 -KKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN-RDIAKVLLIN  288 (328)
Q Consensus       211 -g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~-~~iv~~Ll~~  288 (328)
                       ++.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..++++|+++
T Consensus       352 ~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~  431 (682)
T PHA02876        352 DRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDR  431 (682)
T ss_pred             CCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhC
Confidence             46677777777788887777788888888888888888888888887777777777777777776554 4567777888


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          289 GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       289 gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      |++++.+|..|+||||+|+..|.   ..+++++|...+
T Consensus       432 gadin~~d~~G~TpLh~Aa~~~~---~~~iv~lLl~~G  466 (682)
T PHA02876        432 GANVNSKNKDLSTPLHYACKKNC---KLDVIEMLLDNG  466 (682)
T ss_pred             CCCCCcCCCCCChHHHHHHHhCC---cHHHHHHHHHCC
Confidence            88888888888888888887663   267777776654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.3e-26  Score=227.11  Aligned_cols=179  Identities=20%  Similarity=0.271  Sum_probs=101.0

Q ss_pred             hChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHh--CCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC------CHH
Q 020274          143 LLEPEEREILNQNATPNLGKISTAKWRPLQTLTLS--MQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK------KEA  214 (328)
Q Consensus       143 ~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~--g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g------~~~  214 (328)
                      ...+.++.|++.|++++..   ..|.||||.++..  ++.++|++|+++|+++|.++ .+.||||.|+..+      +.+
T Consensus        14 ~~~~~v~~LL~~GadvN~~---~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~   89 (494)
T PHA02989         14 VDKNALEFLLRTGFDVNEE---YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKK   89 (494)
T ss_pred             CcHHHHHHHHHcCCCcccc---cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHH
Confidence            4455556666666655543   2355555544333  24566666666666666554 3456666555432      345


Q ss_pred             HHHHHHHCCCCCCCCCCCCChHHHHHHHc---CCHHHHHHHHhCCCCc-cccCCCCCcHHHHHHHc--CCHHHHHHHHHc
Q 020274          215 VISHLLRKGANPHVKDGDGATPLHYAVQV---GAMQSVKLLIKYNVDV-NVADNEGWTPLHIAIQS--RNRDIAKVLLIN  288 (328)
Q Consensus       215 ~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~ga~i-n~~d~~g~TpL~~A~~~--g~~~iv~~Ll~~  288 (328)
                      ++++|+++|++++.++..|.||||.|+..   ++.+++++|+++|+++ +.++..|.||||+|+..  ++.+++++|+++
T Consensus        90 iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~  169 (494)
T PHA02989         90 IVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF  169 (494)
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence            66666666666666666666666655543   4556666666666666 55566666666665543  355666666666


Q ss_pred             CCCCCC-CCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          289 GADKSR-KTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       289 gad~~~-~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      |++++. .+..|.||||+|+..+......+++++|...
T Consensus       170 Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~  207 (494)
T PHA02989        170 GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKK  207 (494)
T ss_pred             CCCccccccccCCChHHHHHhcccccccHHHHHHHHhC
Confidence            666665 4555666666665554333345666655543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=4.9e-26  Score=235.15  Aligned_cols=175  Identities=21%  Similarity=0.292  Sum_probs=161.4

Q ss_pred             ccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC
Q 020274          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK  211 (328)
Q Consensus       132 ~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g  211 (328)
                      ....++.|+..|+...++.+++.|.+++..  +..|+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+..|
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~--d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDIG--DSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAK  602 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhC
Confidence            346689999999999999999999988764  788999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020274          212 KEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD  291 (328)
Q Consensus       212 ~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  291 (328)
                      +.+++++|++.++..+.  ..|.++||.|+..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++||+
T Consensus       603 ~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAd  680 (823)
T PLN03192        603 HHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGAD  680 (823)
T ss_pred             CHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCC
Confidence            99999999998876543  4577999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC-CcHHHHHHHcC
Q 020274          292 KSRKTKDG-KTALDMSLCYG  310 (328)
Q Consensus       292 ~~~~d~~G-~TpL~~A~~~g  310 (328)
                      ++..|..| .||++++....
T Consensus       681 v~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        681 VDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             CCCCCCCCCCCHHHHHHHHH
Confidence            99999998 89999886544

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=6.4e-27  Score=214.81  Aligned_cols=187  Identities=25%  Similarity=0.252  Sum_probs=162.5

Q ss_pred             HHHHHHhhChHHHHHHHhcCCCCCC---CCCCCCCCcHHHHHHHhCCHHHHHHHHH-CCCCCCcc--------CCCCCcH
Q 020274          136 LLKEVEQLLEPEEREILNQNATPNL---GKISTAKWRPLQTLTLSMQIRYMDMLLD-GGLDIDSV--------DKDGLTA  203 (328)
Q Consensus       136 l~~ai~~~~~~~v~~lL~~g~~~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gadi~~~--------d~~g~t~  203 (328)
                      .+.+.+.|....+..++.......+   -....+|.|||.+|+.+|+.++|++|++ .++++...        ...|-+|
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence            3466666766666666654332211   1235678899999999999999999998 67776543        3357899


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHH
Q 020274          204 LHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAK  283 (328)
Q Consensus       204 L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~  283 (328)
                      |..|+..||.++|+.|+++|+++|....-..|||--||.-|+.++|++|+++|+|+++.|..|+|.||+||..|+.+|++
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~q  167 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQ  167 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHH
Confidence            99999999999999999999999998888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          284 VLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       284 ~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      +|++.|||+|.++..|+|+||.|+..|+    .+|+++|....
T Consensus       168 yLle~gADvn~ks~kGNTALH~caEsG~----vdivq~Ll~~g  206 (615)
T KOG0508|consen  168 YLLEQGADVNAKSYKGNTALHDCAESGS----VDIVQLLLKHG  206 (615)
T ss_pred             HHHHhCCCcchhcccCchHHHhhhhccc----HHHHHHHHhCC
Confidence            9999999999999999999999999999    99999998754

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=6.5e-26  Score=219.79  Aligned_cols=185  Identities=27%  Similarity=0.348  Sum_probs=147.8

Q ss_pred             HHHHHHhhChHHHHHHHh-----cCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCC---------------CCc
Q 020274          136 LLKEVEQLLEPEEREILN-----QNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLD---------------IDS  195 (328)
Q Consensus       136 l~~ai~~~~~~~v~~lL~-----~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad---------------i~~  195 (328)
                      ++.+++.+..+...-++.     ++..+|.  .+..+.||||.|+..|+.++++.+|+.|..               +|.
T Consensus       191 iH~aa~s~s~e~mEi~l~~~g~~r~~~in~--~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~  268 (929)
T KOG0510|consen  191 IHEAARSGSKECMEIFLPEHGYERQTHINF--DNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVND  268 (929)
T ss_pred             HHHHHHhcchhhhhhhhccccchhhccccc--ccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhc
Confidence            444444444444444444     2333332  356788899999999999999999887643               344


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHh-CC-CCccccCCCCCcHHHHH
Q 020274          196 VDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIK-YN-VDVNVADNEGWTPLHIA  273 (328)
Q Consensus       196 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~-~g-a~in~~d~~g~TpL~~A  273 (328)
                      .|.+|.||||+||+.|+++.+..|+..|++++.++.++.||||.|+.+|+..+|+-||+ .| ..+|..|-.|.||||+|
T Consensus       269 ~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHla  348 (929)
T KOG0510|consen  269 EDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLA  348 (929)
T ss_pred             ccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhh
Confidence            67889999999999999999999999999999999999999999999999999999998 43 55788888999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCC---CCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          274 IQSRNRDIAKVLLINGADKS---RKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       274 ~~~g~~~iv~~Ll~~gad~~---~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      ++.||..++++||++||+..   ..|.+|.||||+|+.+|+    ..+++.|....
T Consensus       349 a~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~----~~av~~Li~~G  400 (929)
T KOG0510|consen  349 AKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGN----TSAVQKLISHG  400 (929)
T ss_pred             hhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhcc----HHHHHHHHHcC
Confidence            99999999999999999877   458999999999999998    67777776543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=2.8e-25  Score=229.51  Aligned_cols=157  Identities=24%  Similarity=0.292  Sum_probs=148.0

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 020274          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV  243 (328)
Q Consensus       164 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~  243 (328)
                      +..+.++|+.||..|+.++++.|++.|+++|..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||.|+..
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~  601 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA  601 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh
Confidence            44567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHh
Q 020274          244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  323 (328)
Q Consensus       244 g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~  323 (328)
                      |+.+++++|+..++..+.  ..|.++||.|+..|+.+++++|+++|+|++.+|..|.||||+|+..|+    .+++++|.
T Consensus       602 g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~----~~iv~~Ll  675 (823)
T PLN03192        602 KHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDH----VDMVRLLI  675 (823)
T ss_pred             CCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc----HHHHHHHH
Confidence            999999999998876553  457799999999999999999999999999999999999999999999    99999998


Q ss_pred             hCC
Q 020274          324 ILP  326 (328)
Q Consensus       324 ~~~  326 (328)
                      ...
T Consensus       676 ~~G  678 (823)
T PLN03192        676 MNG  678 (823)
T ss_pred             HcC
Confidence            654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=1e-25  Score=218.40  Aligned_cols=186  Identities=25%  Similarity=0.334  Sum_probs=154.2

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~  212 (328)
                      ...++-|...+..+..+.+++.++++++.  +..+.||||+||..++.+..+.|++.|+++-..|.+|.+|+|.|+++|.
T Consensus       122 ~aplh~A~~~~~~s~L~~Ll~~~~dvnl~--de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s  199 (929)
T KOG0510|consen  122 NAPLHLAADSGNYSCLKLLLDYGADVNLE--DENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGS  199 (929)
T ss_pred             cCchhhccccchHHHHHHHHHhcCCcccc--ccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcc
Confidence            34566677777788888888888777665  7778888888888888887788888888888888888888888888888


Q ss_pred             HHHHHHHHH-----CCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCC---------------ccccCCCCCcHHHH
Q 020274          213 EAVISHLLR-----KGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD---------------VNVADNEGWTPLHI  272 (328)
Q Consensus       213 ~~~v~~Ll~-----~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~---------------in~~d~~g~TpL~~  272 (328)
                      .++.+..+.     ++..+|.-+..|.||||.|+..|+.++++.+|+.|+.               +|..|++|.||||+
T Consensus       200 ~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~  279 (929)
T KOG0510|consen  200 KECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHY  279 (929)
T ss_pred             hhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHH
Confidence            888888887     5677787788888999999999999999999988643               35678889999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          273 AIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       273 A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      |++.|++++++.|+..|++++.++.++.||||.|+.+|+    ...++-|.+
T Consensus       280 a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~----~ntv~rLL~  327 (929)
T KOG0510|consen  280 AARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGR----INTVERLLQ  327 (929)
T ss_pred             HHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHccc----HHHHHHHHh
Confidence            999999999999999999999999999999999999998    676664444

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.93  E-value=1.5e-25  Score=228.75  Aligned_cols=188  Identities=35%  Similarity=0.468  Sum_probs=174.5

Q ss_pred             cHHHHHHHHhh-ChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC
Q 020274          133 EEDLLKEVEQL-LEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK  211 (328)
Q Consensus       133 ~~~l~~ai~~~-~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g  211 (328)
                      ...++.+...+ ..+....+++.+.+++..  ...|+||||+|+..|+.++++.|++.++..+.....|.++||.|...+
T Consensus       441 ~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~--s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~  518 (1143)
T KOG4177|consen  441 YTPLHVAAKKGRYLQIARLLLQYGADPNAV--SKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADED  518 (1143)
T ss_pred             CChhhhhhhcccHhhhhhhHhhcCCCcchh--ccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhh
Confidence            45577777777 677778888888888765  678999999999999999999999999888888888999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020274          212 KEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD  291 (328)
Q Consensus       212 ~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  291 (328)
                      ...+++.++++|++++.++..|.||||.|+..|+..+|++||++|++++.+++.|+||||.||..|+.+|+.+|+++||+
T Consensus       519 ~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~  598 (1143)
T KOG4177|consen  519 TVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS  598 (1143)
T ss_pred             hHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          292 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       292 ~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      +|..+.+|.|||++|+..|+    .+++++|+..-
T Consensus       599 vna~d~~g~TpL~iA~~lg~----~~~~k~l~~~~  629 (1143)
T KOG4177|consen  599 VNAADLDGFTPLHIAVRLGY----LSVVKLLKVVT  629 (1143)
T ss_pred             CCcccccCcchhHHHHHhcc----cchhhHHHhcc
Confidence            99999999999999999999    89999888653

>PHA02917 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.8e-24  Score=216.95  Aligned_cols=191  Identities=18%  Similarity=0.147  Sum_probs=154.6

Q ss_pred             cccHHHHHHHHhhChH----HHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHH
Q 020274          131 KYEEDLLKEVEQLLEP----EEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHK  206 (328)
Q Consensus       131 ~~~~~l~~ai~~~~~~----~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~  206 (328)
                      .....|+.|+..+..+    .+..+++.+...+..    ...+++++|+..|+.++|++|+++|+++|.+|..|+||||.
T Consensus        67 ~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~----~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~  142 (661)
T PHA02917         67 RQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIN----DFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIEN  142 (661)
T ss_pred             CCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCC----CcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHH
Confidence            3456788888887643    345556655444543    23477888999999999999999999999999999999996


Q ss_pred             HH--HcCCHHHHHHHHHCCCCCCCCCC---CC-----------ChHHHHHHH-----------cCCHHHHHHHHhCCCCc
Q 020274          207 AI--IGKKEAVISHLLRKGANPHVKDG---DG-----------ATPLHYAVQ-----------VGAMQSVKLLIKYNVDV  259 (328)
Q Consensus       207 A~--~~g~~~~v~~Ll~~g~d~~~~d~---~g-----------~tpLh~A~~-----------~g~~~iv~~Ll~~ga~i  259 (328)
                      |+  ..|+.+++++|+++|++++.+|.   .|           .||||+|+.           .++.+++++|+++|+++
T Consensus       143 ~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadv  222 (661)
T PHA02917        143 YVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKP  222 (661)
T ss_pred             HHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCc
Confidence            54  57899999999999999986653   34           599999986           46899999999999999


Q ss_pred             cccCCCCCcHHHHHHHcCCH--HHHHHHHHcCCCCC----CCCCCCCcHHHHHHHcCC-----CCChHHHHHHHhhCC
Q 020274          260 NVADNEGWTPLHIAIQSRNR--DIAKVLLINGADKS----RKTKDGKTALDMSLCYGR-----DFKSYDLAKLLKILP  326 (328)
Q Consensus       260 n~~d~~g~TpL~~A~~~g~~--~iv~~Ll~~gad~~----~~d~~G~TpL~~A~~~g~-----~~~~~~i~~lL~~~~  326 (328)
                      |.+|..|.||||+|+..|+.  ++|++|++ |++++    ..+..|.||+++|+..++     .....+++++|...+
T Consensus       223 n~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~G  299 (661)
T PHA02917        223 SSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENG  299 (661)
T ss_pred             ccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCC
Confidence            99999999999999999985  79999974 98875    466778899999985321     123589999987654

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=4.8e-25  Score=196.83  Aligned_cols=157  Identities=29%  Similarity=0.426  Sum_probs=143.2

Q ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHHCC-CCCCccCCCCCcHHHHHHH-----cCCHHHHHHHHHCCCCCCCCC-CCCC
Q 020274          162 KISTAKWRPLQTLTLSMQIRYMDMLLDGG-LDIDSVDKDGLTALHKAII-----GKKEAVISHLLRKGANPHVKD-GDGA  234 (328)
Q Consensus       162 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-adi~~~d~~g~t~L~~A~~-----~g~~~~v~~Ll~~g~d~~~~d-~~g~  234 (328)
                      ..|.+|.|+||+|+..+++++|+.||+.| ++++..+.-|.||+++++.     ..+..+|..|.+.| ++|.+- ..|.
T Consensus       263 laDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQ  341 (452)
T KOG0514|consen  263 LADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQ  341 (452)
T ss_pred             hhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcc
Confidence            34889999999999999999999999988 6899999999999999984     34678899999886 577654 4799


Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCCCC
Q 020274          235 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN-GADKSRKTKDGKTALDMSLCYGRDF  313 (328)
Q Consensus       235 tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~d~~G~TpL~~A~~~g~~~  313 (328)
                      |+|++|+.+|+.++|+.||..|||+|++|.+|.|+|++||.+||.+|+++||.. ++|+...|.+|.|+|.+|...|+  
T Consensus       342 TALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh--  419 (452)
T KOG0514|consen  342 TALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH--  419 (452)
T ss_pred             hhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc--
Confidence            999999999999999999999999999999999999999999999999999966 89999999999999999999999  


Q ss_pred             ChHHHHHHHh
Q 020274          314 KSYDLAKLLK  323 (328)
Q Consensus       314 ~~~~i~~lL~  323 (328)
                        .+|.-+|.
T Consensus       420 --~eIa~mlY  427 (452)
T KOG0514|consen  420 --REIAVMLY  427 (452)
T ss_pred             --hHHHHHHH
Confidence              77776654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=1.3e-24  Score=182.71  Aligned_cols=138  Identities=21%  Similarity=0.274  Sum_probs=127.5

Q ss_pred             CCCCCCcHHHHHHHhCCH----HHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHH---HHHHHHHCCCCCCCCC-CCCC
Q 020274          163 ISTAKWRPLQTLTLSMQI----RYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEA---VISHLLRKGANPHVKD-GDGA  234 (328)
Q Consensus       163 ~~~~g~t~L~~A~~~g~~----~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~---~v~~Ll~~g~d~~~~d-~~g~  234 (328)
                      .+..+.++||.||..|++    +++++|++.|++++.+|..|+||||+|+..|+.+   ++++|+++|++++.++ ..|.
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~   95 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGN   95 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            466788999999999998    6777888999999999999999999999998765   4899999999999998 5899


Q ss_pred             hHHHHHHHcCCHHHHHHHHh-CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 020274          235 TPLHYAVQVGAMQSVKLLIK-YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGK  300 (328)
Q Consensus       235 tpLh~A~~~g~~~iv~~Ll~-~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~  300 (328)
                      ||||+|+..|+.+++++|+. .|++++.++..|.||||+|+..++.+++++|+.+|++++.++..|.
T Consensus        96 TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         96 TLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             cHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            99999999999999999995 7999999999999999999999999999999999999999998875

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=1.8e-25  Score=187.35  Aligned_cols=167  Identities=27%  Similarity=0.383  Sum_probs=150.3

Q ss_pred             hhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 020274          142 QLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLR  221 (328)
Q Consensus       142 ~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~  221 (328)
                      ++...++...|.++...|  ..+.-+|+|+.+++..-+++.+..+.+.  -+|..|..|.|||.||+..|++.+|++||+
T Consensus       106 ~~s~~k~sttltN~~rgn--evs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~fLL~  181 (296)
T KOG0502|consen  106 CGSVDKVSTTLTNGARGN--EVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQFLLN  181 (296)
T ss_pred             CCCcceeeeeecccccCC--ccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHHHHH
Confidence            344445555566665543  3477899999999999988888776665  478999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc
Q 020274          222 KGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKT  301 (328)
Q Consensus       222 ~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~T  301 (328)
                      .|++++...+...|+|.+|+..|..+||++||.+++++|..|.+|.|||-||++-+|.+|++.||..||+++..+..|.+
T Consensus       182 ~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~  261 (296)
T KOG0502|consen  182 SGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYW  261 (296)
T ss_pred             cCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCc
Confidence            99999998888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCC
Q 020274          302 ALDMSLCYGRD  312 (328)
Q Consensus       302 pL~~A~~~g~~  312 (328)
                      ++++|+..|+.
T Consensus       262 ~mdlAValGyr  272 (296)
T KOG0502|consen  262 IMDLAVALGYR  272 (296)
T ss_pred             HHHHHHHhhhH
Confidence            99999999984

>PHA02795 ankyrin-like protein; Provisional

Probab=99.92  E-value=7.4e-24  Score=199.93  Aligned_cols=163  Identities=14%  Similarity=0.049  Sum_probs=146.0

Q ss_pred             cccHHHHHHHH--hhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccC------CCCCc
Q 020274          131 KYEEDLLKEVE--QLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD------KDGLT  202 (328)
Q Consensus       131 ~~~~~l~~ai~--~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d------~~g~t  202 (328)
                      ..+..|+.++.  .+..+.++.|++.|++++..    .+.||||.|+..++.+++++|+++|++.....      ..+.|
T Consensus       115 ~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~----~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t  190 (437)
T PHA02795        115 SVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI----ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYT  190 (437)
T ss_pred             cccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC----CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccc
Confidence            34667788888  88999999999999999863    45899999999999999999999998543221      34789


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCC----
Q 020274          203 ALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN----  278 (328)
Q Consensus       203 ~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~----  278 (328)
                      ++|.|+..++.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+    
T Consensus       191 ~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~  270 (437)
T PHA02795        191 RGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIAR  270 (437)
T ss_pred             hhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999984    


Q ss_pred             ----HHHHHHHHHcCCCCCCCCC
Q 020274          279 ----RDIAKVLLINGADKSRKTK  297 (328)
Q Consensus       279 ----~~iv~~Ll~~gad~~~~d~  297 (328)
                          .+++++|+++|++++....
T Consensus       271 ~~~~~eIvelLL~~gadI~~~~~  293 (437)
T PHA02795        271 RETHLKILEILLREPLSIDCIKL  293 (437)
T ss_pred             cccHHHHHHHHHhCCCCCCchhH
Confidence                6999999999999887543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=2.6e-24  Score=200.91  Aligned_cols=177  Identities=30%  Similarity=0.450  Sum_probs=158.4

Q ss_pred             ccccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHH
Q 020274          130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAII  209 (328)
Q Consensus       130 ~~~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~  209 (328)
                      ..-...++.++.+++.+.+..+|..|..++.  .+.+|.|+||-+|.-.+.+||++|+++|++||..|..|+||||.|+.
T Consensus        38 f~~sa~~l~A~~~~d~~ev~~ll~~ga~~~~--~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaas  115 (527)
T KOG0505|consen   38 FEDSAVFLEACSRGDLEEVRKLLNRGASPNL--CNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAAS  115 (527)
T ss_pred             CCchHHHHhccccccHHHHHHHhccCCCccc--cCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcc
Confidence            3444678999999999999999999988854  48899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCC-----------------------------------------------------------CC
Q 020274          210 GKKEAVISHLLRKGANPHV-----------------------------------------------------------KD  230 (328)
Q Consensus       210 ~g~~~~v~~Ll~~g~d~~~-----------------------------------------------------------~d  230 (328)
                      .|+..++++|+.+|+++-.                                                           ++
T Consensus       116 cg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~  195 (527)
T KOG0505|consen  116 CGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARH  195 (527)
T ss_pred             cccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccc
Confidence            9999999999999875422                                                           12


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 020274          231 GDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLC  308 (328)
Q Consensus       231 ~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~  308 (328)
                      ..|.|.||.|+..|..++.++|++.|.+++.+|.+||||||.|+.-|+.+++++|+++|++++.++..|.||+++|..
T Consensus       196 ~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  196 ARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             cccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            347888999999999999999999999999999999999999999999999999999999999999999999998864

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.91  E-value=1.2e-23  Score=215.78  Aligned_cols=192  Identities=22%  Similarity=0.186  Sum_probs=134.0

Q ss_pred             cccccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHH-HHHHhCCHHHHHHHHHCCCCC--------------
Q 020274          129 ISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQ-TLTLSMQIRYMDMLLDGGLDI--------------  193 (328)
Q Consensus       129 ~~~~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gadi--------------  193 (328)
                      .......++.|+++|+.+.++.+++.+...+.+..+..|+|||| .|+..++.+++++|+++|+..              
T Consensus        14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~   93 (743)
T TIGR00870        14 LSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEY   93 (743)
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhcc
Confidence            34556789999999999999999998545555566889999999 888889999999999988410              


Q ss_pred             --------------C--------------ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC--------------C
Q 020274          194 --------------D--------------SVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKD--------------G  231 (328)
Q Consensus       194 --------------~--------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d--------------~  231 (328)
                                    .              .....|.||||+||..|+.++|++|+++|++++.++              .
T Consensus        94 ~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~  173 (743)
T TIGR00870        94 VDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFY  173 (743)
T ss_pred             HHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCccc
Confidence                          0              001236677777777777777777777777766542              2


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcC---------CHHHHHHHHHcCCCC-------CCC
Q 020274          232 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR---------NRDIAKVLLINGADK-------SRK  295 (328)
Q Consensus       232 ~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g---------~~~iv~~Ll~~gad~-------~~~  295 (328)
                      .|.||||.|+..|+.+++++|+++|++++.+|..|+||||+|+..+         ...+.++++..++..       +.+
T Consensus       174 ~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~  253 (743)
T TIGR00870       174 HGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVIL  253 (743)
T ss_pred             ccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhc
Confidence            4667777777777777777777777777777777777777777665         223445555444433       556


Q ss_pred             CCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          296 TKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       296 d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      |.+|.||||+|+..|+    .+++++|..
T Consensus       254 N~~g~TPL~~A~~~g~----~~l~~lLL~  278 (743)
T TIGR00870       254 NHQGLTPLKLAAKEGR----IVLFRLKLA  278 (743)
T ss_pred             CCCCCCchhhhhhcCC----ccHHHHHHH
Confidence            6777777777777776    666666554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=3.8e-23  Score=203.78  Aligned_cols=186  Identities=15%  Similarity=0.120  Sum_probs=155.8

Q ss_pred             cHHHHHHHHhh---ChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhC--CHHHHHHHHHCCC--CCCccCCCCCcHHH
Q 020274          133 EEDLLKEVEQL---LEPEEREILNQNATPNLGKISTAKWRPLQTLTLSM--QIRYMDMLLDGGL--DIDSVDKDGLTALH  205 (328)
Q Consensus       133 ~~~l~~ai~~~---~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~ga--di~~~d~~g~t~L~  205 (328)
                      ...|+-|+..+   ..+.++.||+.|++++..  +..|+||||+|+..+  +.++|++|+++|+  +++..+..+.+|||
T Consensus        42 ~TaLh~A~~~~~~~~~eivklLLs~GAdin~k--D~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~  119 (672)
T PHA02730         42 NNALHCYVSNKCDTDIKIVRLLLSRGVERLCR--NNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLY  119 (672)
T ss_pred             CcHHHHHHHcCCcCcHHHHHHHHhCCCCCccc--CCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHH
Confidence            35678888876   489999999999998854  889999999999977  7999999999965  45778877999999


Q ss_pred             HHHH--cCCHHHHHHHHH-CCCCCCCCCC-----CCChHHHHHHHcCCHHHHHHHHhCCCCcc-------ccCCCCC-cH
Q 020274          206 KAII--GKKEAVISHLLR-KGANPHVKDG-----DGATPLHYAVQVGAMQSVKLLIKYNVDVN-------VADNEGW-TP  269 (328)
Q Consensus       206 ~A~~--~g~~~~v~~Ll~-~g~d~~~~d~-----~g~tpLh~A~~~g~~~iv~~Ll~~ga~in-------~~d~~g~-Tp  269 (328)
                      .++.  +++.++|++|+. .+++++....     .|.+|++++...+++++|++|+++|++++       ..+..+. |.
T Consensus       120 ~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~  199 (672)
T PHA02730        120 SYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNS  199 (672)
T ss_pred             HHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchh
Confidence            9988  899999999996 7788876532     78999999999999999999999999995       2344444 55


Q ss_pred             HHHHH------HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH--HHHcCCCCChHHHHHHHhh
Q 020274          270 LHIAI------QSRNRDIAKVLLINGADKSRKTKDGKTALDM--SLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       270 L~~A~------~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~--A~~~g~~~~~~~i~~lL~~  324 (328)
                      ||+++      ..++.+++++|+++||+++.+|..|.||||+  |...|+    .+++++|..
T Consensus       200 l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~----~eiv~~Li~  258 (672)
T PHA02730        200 LHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTID----IEIVKLLIK  258 (672)
T ss_pred             HHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCccc----HHHHHHHHh
Confidence            55443      4568999999999999999999999999996  444455    899999976

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=1.9e-23  Score=176.23  Aligned_cols=130  Identities=16%  Similarity=0.237  Sum_probs=96.1

Q ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHH------CCCCCCccCCCCCcHHHHHHHcCC----HHHHHHHHHCCCCCCCCCC
Q 020274          162 KISTAKWRPLQTLTLSMQIRYMDMLLD------GGLDIDSVDKDGLTALHKAIIGKK----EAVISHLLRKGANPHVKDG  231 (328)
Q Consensus       162 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~gadi~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~d~~~~d~  231 (328)
                      ..+..|.||||+|+..|+.++++.|+.      .|++++.+|..|.||||+|+..|+    .+++++|+++|++++.++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            346677777777777777777777643      356777777777777777777777    4677777777777777764


Q ss_pred             -CCChHHHHHHHcCCHHHHHHHHh-CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020274          232 -DGATPLHYAVQVGAMQSVKLLIK-YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD  291 (328)
Q Consensus       232 -~g~tpLh~A~~~g~~~iv~~Ll~-~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  291 (328)
                       .|+||||+|+..++.+++++|+. .|++++..|..|+||||+|+..++.+++++|++.++.
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence             77777777777777777777776 4777777777777777777777777777777776554

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.91  E-value=1.8e-23  Score=169.41  Aligned_cols=152  Identities=27%  Similarity=0.347  Sum_probs=136.7

Q ss_pred             cHHHHHHHhCCHHHHHHHHHCCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHH
Q 020274          169 RPLQTLTLSMQIRYMDMLLDGGLD-IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQ  247 (328)
Q Consensus       169 t~L~~A~~~g~~~~v~~Ll~~gad-i~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~  247 (328)
                      ..+.+|+..+.+..|+.||+..++ +|.+|.+|.||||.|+++|+.+||..|+..|++++.+...||||||.||...+.+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            457899999999999999987776 8999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCccccCCCCCcHHHHHHHcCC-HHHHHHHH-HcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHH
Q 020274          248 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRN-RDIAKVLL-INGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK  320 (328)
Q Consensus       248 iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~-~~iv~~Ll-~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~  320 (328)
                      |+.+||++|+|+|+......||||+||...+ ...+.+|+ .+++++..++..+.||+++|-+.+--...+++++
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~lfe~~e  219 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYLFEIVE  219 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHHHHHHH
Confidence            9999999999999999999999999998765 45566666 5699999999999999999998876444455554

>PHA02730 ankyrin-like protein; Provisional

Probab=99.90  E-value=6.9e-23  Score=201.94  Aligned_cols=152  Identities=22%  Similarity=0.234  Sum_probs=114.6

Q ss_pred             HHHHHHHhC---CHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC----HHHHHHHHHCCC--CCCCCCCCCChHHHH-
Q 020274          170 PLQTLTLSM---QIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK----EAVISHLLRKGA--NPHVKDGDGATPLHY-  239 (328)
Q Consensus       170 ~L~~A~~~g---~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~--d~~~~d~~g~tpLh~-  239 (328)
                      .||.=...+   +.+++++|+++||++|.. ..|.||||+|+..++    .+++++|+++|+  +++.+|..|.||||. 
T Consensus       346 ~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~  424 (672)
T PHA02730        346 MLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGL  424 (672)
T ss_pred             HHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHH
Confidence            444444434   467777777777777764 678888888887664    788888888887  578888888888874 


Q ss_pred             --HHHcC---------CHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHH
Q 020274          240 --AVQVG---------AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK-DGKTALDMSL  307 (328)
Q Consensus       240 --A~~~g---------~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~-~G~TpL~~A~  307 (328)
                        |...+         ..+++++|+.+|+++|.+|..|.||||+|+..++.+++++|+.+||+++.++. .|.||||+|+
T Consensus       425 i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa  504 (672)
T PHA02730        425 ILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSS  504 (672)
T ss_pred             HHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHH
Confidence              22222         23568888888888888888888888888888888888888888888888886 4888888887


Q ss_pred             Hc--CCCCChHHHHHHHhhCC
Q 020274          308 CY--GRDFKSYDLAKLLKILP  326 (328)
Q Consensus       308 ~~--g~~~~~~~i~~lL~~~~  326 (328)
                      ..  ++    .+++++|....
T Consensus       505 ~~~~~~----~eIv~~LLs~g  521 (672)
T PHA02730        505 YRRENK----TKLVDLLLSYH  521 (672)
T ss_pred             HhhcCc----HHHHHHHHHcC
Confidence            64  45    78888776654

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=3.3e-23  Score=174.76  Aligned_cols=129  Identities=22%  Similarity=0.330  Sum_probs=119.0

Q ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCChHHHHHHHcCC----HHHHHHHHhCCCCcccc
Q 020274          193 IDSVDKDGLTALHKAIIGKKEAVISHLLR------KGANPHVKDGDGATPLHYAVQVGA----MQSVKLLIKYNVDVNVA  262 (328)
Q Consensus       193 i~~~d~~g~t~L~~A~~~g~~~~v~~Ll~------~g~d~~~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~ga~in~~  262 (328)
                      ++.++..|.||||+|+..|+.++++.|+.      .|++++.+|..|+||||+|+..|+    .+++++|+.+|++++.+
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            35677889999999999999999999854      368899999999999999999998    58999999999999999


Q ss_pred             CC-CCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          263 DN-EGWTPLHIAIQSRNRDIAKVLLI-NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       263 d~-~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      +. .|+||||+|+..++.+++++|+. .|++++.+|..|+||||+|+..++    .+++++|..+
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~----~~iv~~L~~~  154 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNED----VAMMQILREI  154 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCC----HHHHHHHHHH
Confidence            85 89999999999999999999997 599999999999999999999998    8999988765

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=2.8e-23  Score=174.73  Aligned_cols=134  Identities=19%  Similarity=0.235  Sum_probs=122.7

Q ss_pred             CCCCCCccCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHH---HHHHHHhCCCCccc
Q 020274          189 GGLDIDSVDKDGLTALHKAIIGKKE----AVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQ---SVKLLIKYNVDVNV  261 (328)
Q Consensus       189 ~gadi~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~---iv~~Ll~~ga~in~  261 (328)
                      +|++++..+..+.++||.||+.|+.    +++++|++.|+.++.+|..|+||||+|+..|+.+   ++++|+++|++++.
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            5678888888899999999999998    6677888999999999999999999999998865   48999999999999


Q ss_pred             cC-CCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          262 AD-NEGWTPLHIAIQSRNRDIAKVLLI-NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       262 ~d-~~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      ++ ..|.||||+|+..|+.+++++|+. .|++++.++..|.||||+|+..++    .+++++|....
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~----~~iv~~Ll~~g  151 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRD----RRMMEILRANG  151 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCC----HHHHHHHHHcC
Confidence            98 589999999999999999999995 799999999999999999999998    89999998754

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.90  E-value=2.2e-22  Score=182.91  Aligned_cols=148  Identities=21%  Similarity=0.261  Sum_probs=126.3

Q ss_pred             CCCCC-cHHHHHHHhCCHHHHHHHHHCCCCCCccC----CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCChHH
Q 020274          164 STAKW-RPLQTLTLSMQIRYMDMLLDGGLDIDSVD----KDGLTALHKAIIGKKEAVISHLLRKGANPHVK-DGDGATPL  237 (328)
Q Consensus       164 ~~~g~-t~L~~A~~~g~~~~v~~Ll~~gadi~~~d----~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~-d~~g~tpL  237 (328)
                      +..++ ++||.|+..|+.+++++|+++|++++.++    ..|.||||+|+..++.+++++|+++|++++.+ +..|.|||
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpL  108 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPL  108 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHH
Confidence            44444 56777788899999999999999999874    58999999999999999999999999999986 45799999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHH
Q 020274          238 HYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYD  317 (328)
Q Consensus       238 h~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~  317 (328)
                      |+|+..|+.+++++|+.+|++++.+|..|.||||+|+..++..++.++.  |..   .+..+.+|++++.   .    .+
T Consensus       109 h~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~---n----~e  176 (300)
T PHA02884        109 YISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNE---ISNFYKHPKKILI---N----FD  176 (300)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc---ccccccChhhhhc---c----HH
Confidence            9999999999999999999999999999999999999999988886665  332   4566678888652   2    57


Q ss_pred             HHHHHh
Q 020274          318 LAKLLK  323 (328)
Q Consensus       318 i~~lL~  323 (328)
                      ++++|-
T Consensus       177 i~~~Li  182 (300)
T PHA02884        177 ILKILV  182 (300)
T ss_pred             HHHHHH
Confidence            777664

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.89  E-value=1.1e-23  Score=215.08  Aligned_cols=193  Identities=31%  Similarity=0.367  Sum_probs=146.9

Q ss_pred             cccccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHH
Q 020274          129 ISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAI  208 (328)
Q Consensus       129 ~~~~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~  208 (328)
                      ..+-...++-++..+..+.++.++..|.+++..  ...|.||||.|+..++..+|+.+++.|++++..+..|.||+|+|+
T Consensus       371 ~~k~~~pl~la~~~g~~~~v~Lll~~ga~~~~~--gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa  448 (1143)
T KOG4177|consen  371 EEKGFTPLHLAVKSGRVSVVELLLEAGADPNSA--GKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAA  448 (1143)
T ss_pred             cccCCcchhhhcccCchhHHHhhhhccCCcccC--CCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhh
Confidence            334445567777777777788888877775544  556667777777777766666666666666666666666666666


Q ss_pred             HcC-CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHH---------------------------------HHh
Q 020274          209 IGK-KEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKL---------------------------------LIK  254 (328)
Q Consensus       209 ~~g-~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~---------------------------------Ll~  254 (328)
                      ..| ..++...+++.|+++|..-..|.||||+|+..|+.++++.                                 ++.
T Consensus       449 ~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~  528 (1143)
T KOG4177|consen  449 KKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLE  528 (1143)
T ss_pred             hcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhh
Confidence            666 5666666666666666666666666666666655555444                                 445


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          255 YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       255 ~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      +|++++.++..|.||||.||..|+..+|++||++|||++.+++.|+||||.|+.+|+    .+|+++|.+.+.
T Consensus       529 ~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~----~~i~~LLlk~GA  597 (1143)
T KOG4177|consen  529 HGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGH----NDIAELLLKHGA  597 (1143)
T ss_pred             cCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcCh----HHHHHHHHHcCC
Confidence            677888899999999999999999999999999999999999999999999999998    999999988764

>PHA02792 ankyrin-like protein; Provisional

Probab=99.89  E-value=4.3e-22  Score=194.52  Aligned_cols=47  Identities=9%  Similarity=0.003  Sum_probs=36.4

Q ss_pred             CCCCCcHHHHHHHhC-------CHHHHHHHHHCCCCCCccCCCCCcHHHHHHHc
Q 020274          164 STAKWRPLQTLTLSM-------QIRYMDMLLDGGLDIDSVDKDGLTALHKAIIG  210 (328)
Q Consensus       164 ~~~g~t~L~~A~~~g-------~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~  210 (328)
                      +..|.||||+|+..+       +.+++++|+++|++++.+|..|.||||+|+..
T Consensus       172 ~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~  225 (631)
T PHA02792        172 DRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDK  225 (631)
T ss_pred             CCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHc
Confidence            445788888888887       77888888888888888888888888887433

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.89  E-value=5.6e-23  Score=170.67  Aligned_cols=129  Identities=21%  Similarity=0.216  Sum_probs=110.0

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHCCC--C-----CCccCCCCCcHHHHHHHcCCH---HHHHHHHHCCCCCCCCC-C
Q 020274          163 ISTAKWRPLQTLTLSMQIRYMDMLLDGGL--D-----IDSVDKDGLTALHKAIIGKKE---AVISHLLRKGANPHVKD-G  231 (328)
Q Consensus       163 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga--d-----i~~~d~~g~t~L~~A~~~g~~---~~v~~Ll~~g~d~~~~d-~  231 (328)
                      .+..|.||||+|+..|+.  +.+++..+.  +     ++.+|..|.||||+|+..|+.   +++++|+++|++++.++ .
T Consensus        13 ~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~   90 (154)
T PHA02736         13 PDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERV   90 (154)
T ss_pred             cCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCC
Confidence            467899999999999984  344433222  2     335688899999999999886   46889999999999998 4


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHh-CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 020274          232 DGATPLHYAVQVGAMQSVKLLIK-YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS  293 (328)
Q Consensus       232 ~g~tpLh~A~~~g~~~iv~~Ll~-~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  293 (328)
                      .|+||||+|+..|+.+++++|+. .|++++.++..|.||||+|+..|+.+++++|+.+|++++
T Consensus        91 ~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         91 FGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            89999999999999999999997 499999999999999999999999999999999999875

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=1.5e-23  Score=175.80  Aligned_cols=161  Identities=25%  Similarity=0.326  Sum_probs=144.6

Q ss_pred             HHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHH
Q 020274          139 EVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISH  218 (328)
Q Consensus       139 ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~  218 (328)
                      +|.+...+.+..+.+.    .++..|..|.|||.||+..|++++|++|++.|++++...+...++|.+|++.|..++|++
T Consensus       136 sVhql~L~~~~~~~~n----~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~l  211 (296)
T KOG0502|consen  136 SVHQLHLDVVDLLVNN----KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVEL  211 (296)
T ss_pred             HHHHHHHHHHHHHhhc----cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHH
Confidence            4444444444443332    345568999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 020274          219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKD  298 (328)
Q Consensus       219 Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~  298 (328)
                      ||.++.|+|..|.+|-|||-+|+..+|.+|++.||..|++++..+..|.+++..|+..|+. +|+..+++-++...+|..
T Consensus       212 LL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~  290 (296)
T KOG0502|consen  212 LLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSE  290 (296)
T ss_pred             HHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999999999999999999999998 999999998999999988


Q ss_pred             CCcHHH
Q 020274          299 GKTALD  304 (328)
Q Consensus       299 G~TpL~  304 (328)
                      -+||+|
T Consensus       291 ~~~~~~  296 (296)
T KOG0502|consen  291 KRTPLH  296 (296)
T ss_pred             CCCCCC
Confidence            888875

>PHA02792 ankyrin-like protein; Provisional

Probab=99.89  E-value=9.7e-22  Score=192.06  Aligned_cols=171  Identities=18%  Similarity=0.189  Sum_probs=144.0

Q ss_pred             HHHHHHHHhh-------ChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhC--CHHHHHHHHHC---------------
Q 020274          134 EDLLKEVEQL-------LEPEEREILNQNATPNLGKISTAKWRPLQTLTLSM--QIRYMDMLLDG---------------  189 (328)
Q Consensus       134 ~~l~~ai~~~-------~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~---------------  189 (328)
                      ..|+-++...       ..+.++-|+.+|++++..  +..|.||||+|+...  ..+++++|++.               
T Consensus       177 t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~--d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~  254 (631)
T PHA02792        177 TVLYYYIITRSQDGYATSLDVINYLISHEKEMRYY--TYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYL  254 (631)
T ss_pred             chHHHHHhhCCcccccCCHHHHHHHHhCCCCcCcc--CCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHH
Confidence            4488888888       788999999999887654  678999999999888  66666666552               


Q ss_pred             ----------------------------------------------------------------------------CCCC
Q 020274          190 ----------------------------------------------------------------------------GLDI  193 (328)
Q Consensus       190 ----------------------------------------------------------------------------gadi  193 (328)
                                                                                                  |+++
T Consensus       255 ~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~  334 (631)
T PHA02792        255 RKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATL  334 (631)
T ss_pred             HHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcc
Confidence                                                                                        1111


Q ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC--ChHHHHHHHcCCH---HHHHHHHhCCCCccccCCCCCc
Q 020274          194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDG--ATPLHYAVQVGAM---QSVKLLIKYNVDVNVADNEGWT  268 (328)
Q Consensus       194 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g--~tpLh~A~~~g~~---~iv~~Ll~~ga~in~~d~~g~T  268 (328)
                      .  ......+++.|+..|+.++|++|+++|++++.+|..|  .||||.|+.....   +++++|+++|+++|.+|..|.|
T Consensus       335 ~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~T  412 (631)
T PHA02792        335 Y--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRS  412 (631)
T ss_pred             c--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcc
Confidence            1  0124556888999999999999999999999998775  6999998776654   4689999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 020274          269 PLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLC  308 (328)
Q Consensus       269 pL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~  308 (328)
                      |||+|+..++.+++++|+++|++++.++..|.|||++|+.
T Consensus       413 PLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        413 ILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             hHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999986

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=5.3e-22  Score=164.79  Aligned_cols=129  Identities=22%  Similarity=0.218  Sum_probs=110.1

Q ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHHCCC--C-----CCCCCCCCChHHHHHHHcCCH---HHHHHHHhCCCCcccc
Q 020274          193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGA--N-----PHVKDGDGATPLHYAVQVGAM---QSVKLLIKYNVDVNVA  262 (328)
Q Consensus       193 i~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~--d-----~~~~d~~g~tpLh~A~~~g~~---~iv~~Ll~~ga~in~~  262 (328)
                      ++.+|..|.||||+||..|+.  +.+++..+.  +     ++.+|..|.||||+|+..|+.   +++++|+++|++++.+
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~   87 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGK   87 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcccc
Confidence            456788899999999999984  344433322  2     234688999999999999987   4689999999999999


Q ss_pred             CC-CCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          263 DN-EGWTPLHIAIQSRNRDIAKVLLI-NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       263 d~-~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      +. .|+||||+|+..|+.+++++|+. .|++++.++..|+||||+|+..|+    .+++++|.....
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~----~~i~~~Ll~~ga  150 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHD----AKMMNILRAKGA  150 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCC----HHHHHHHHHcCC
Confidence            84 89999999999999999999998 599999999999999999999998    899999887643

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=3.6e-21  Score=174.94  Aligned_cols=126  Identities=29%  Similarity=0.372  Sum_probs=111.7

Q ss_pred             CCccCCCCCc-HHHHHHHcCCHHHHHHHHHCCCCCCCCC----CCCChHHHHHHHcCCHHHHHHHHhCCCCcccc-CCCC
Q 020274          193 IDSVDKDGLT-ALHKAIIGKKEAVISHLLRKGANPHVKD----GDGATPLHYAVQVGAMQSVKLLIKYNVDVNVA-DNEG  266 (328)
Q Consensus       193 i~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~d~~~~d----~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~-d~~g  266 (328)
                      +-.+|..|+| +||.|+..|+.+++++|+++|++++.++    ..|.||||+|+..++.+++++|+++||+++.+ +..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            4456777776 5566677799999999999999999874    58999999999999999999999999999986 4679


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHH
Q 020274          267 WTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL  322 (328)
Q Consensus       267 ~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL  322 (328)
                      .||||+|+..|+.+++++|+.+|++++.++..|.||||+|+..++    ..++.++
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~----~~~~~~~  156 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICN----NFLAFMI  156 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCC----hhHHHHh
Confidence            999999999999999999999999999999999999999999877    4555443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.86  E-value=1.7e-21  Score=188.10  Aligned_cols=185  Identities=24%  Similarity=0.285  Sum_probs=104.5

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCH
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKE  213 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~  213 (328)
                      ..++.|+-++....++.+++..+-..+.  +..|.+|||+|++.|+.+++++|+.++..+|.....|.||||.|+..|+.
T Consensus        51 Talhha~Lng~~~is~llle~ea~ldl~--d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~  128 (854)
T KOG0507|consen   51 TLLHHAVLNGQNQISKLLLDYEALLDLC--DTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHL  128 (854)
T ss_pred             hHHHHHHhcCchHHHHHHhcchhhhhhh--hccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcch
Confidence            3455555555555555555544443333  34555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCc--------cccCCCCCcHHHHHHHcCCHHHHHHH
Q 020274          214 AVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV--------NVADNEGWTPLHIAIQSRNRDIAKVL  285 (328)
Q Consensus       214 ~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~i--------n~~d~~g~TpL~~A~~~g~~~iv~~L  285 (328)
                      +++.+|+.+|+++-.++..+.|+|-.|++.|..++|++|++....+        ..++..+-+|||+|+++||.++++.|
T Consensus       129 dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~l  208 (854)
T KOG0507|consen  129 EVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQAL  208 (854)
T ss_pred             HHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHH
Confidence            5555555555555555555555555555555555555555542111        12233445566666666666666666


Q ss_pred             HHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          286 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       286 l~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      +++|.++|.....| |+||.|+..|.    .+++++|...
T Consensus       209 l~ag~din~~t~~g-talheaalcgk----~evvr~ll~~  243 (854)
T KOG0507|consen  209 LEAGFDINYTTEDG-TALHEAALCGK----AEVVRFLLEI  243 (854)
T ss_pred             HhcCCCcccccccc-hhhhhHhhcCc----chhhhHHHhh
Confidence            66666666666655 66666666666    5666666543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.86  E-value=1.9e-21  Score=187.70  Aligned_cols=171  Identities=22%  Similarity=0.211  Sum_probs=100.3

Q ss_pred             HHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHH
Q 020274          136 LLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAV  215 (328)
Q Consensus       136 l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~  215 (328)
                      ++-|.-+|+.+.++.+|.++..+|.  .+..|.||||.|++.|+.+++.+|+.+|+++-.++..+.|+|-+|++.|..++
T Consensus        86 lhlaaw~g~~e~vkmll~q~d~~na--~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~V  163 (854)
T KOG0507|consen   86 LHLAAWNGNLEIVKMLLLQTDILNA--VNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEV  163 (854)
T ss_pred             EEehhhcCcchHHHHHHhcccCCCc--ccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHH
Confidence            4445555566666666655533332  34556666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHCCCCC--------CCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 020274          216 ISHLLRKGANP--------HVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI  287 (328)
Q Consensus       216 v~~Ll~~g~d~--------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~  287 (328)
                      |+.|++...++        ..++..+.+|||.|+.+||.++++.|++.|.++|.....| |+||.|+.+|..++|.+|++
T Consensus       164 vq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~  242 (854)
T KOG0507|consen  164 VQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLE  242 (854)
T ss_pred             HHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHh
Confidence            66666542211        1223345556666666666666666666666666655554 66666666666666666666


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHc
Q 020274          288 NGADKSRKTKDGKTALDMSLCY  309 (328)
Q Consensus       288 ~gad~~~~d~~G~TpL~~A~~~  309 (328)
                      -|++..++|.+|+|+|++-..+
T Consensus       243 ~gin~h~~n~~~qtaldil~d~  264 (854)
T KOG0507|consen  243 IGINTHIKNQHGQTALDIIIDL  264 (854)
T ss_pred             hccccccccccchHHHHHHHhc
Confidence            6666666666666666655544

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=1.6e-20  Score=152.30  Aligned_cols=146  Identities=22%  Similarity=0.267  Sum_probs=129.4

Q ss_pred             cccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHc
Q 020274          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIG  210 (328)
Q Consensus       131 ~~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~  210 (328)
                      .....++-++.++-...|++||+..++. ++.+|.+|+||||-|+++|+.+||+.|+..|++++.+...|+||||-||.-
T Consensus        62 dp~rl~lwaae~nrl~eV~~lL~e~an~-vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckW  140 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEVQRLLSEKANH-VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKW  140 (228)
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHhcccc-ccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcc
Confidence            4456678888999999999999977654 466799999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH-HHHHHHHh-CCCCccccCCCCCcHHHHHHHcC
Q 020274          211 KKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAM-QSVKLLIK-YNVDVNVADNEGWTPLHIAIQSR  277 (328)
Q Consensus       211 g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~-~iv~~Ll~-~ga~in~~d~~g~TpL~~A~~~g  277 (328)
                      .+.+++-.||++|+|+|.......||||+|+...+. ..+.+|+. .++.+..++..+.||+.+|-+.+
T Consensus       141 nN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  141 NNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             cchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhh
Confidence            999999999999999999999999999999987654 45566654 47788888999999999998765

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=2.7e-21  Score=172.99  Aligned_cols=130  Identities=33%  Similarity=0.429  Sum_probs=119.6

Q ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHc-----CCHHHHHHHHhCCCCccccC-CC
Q 020274          193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKG-ANPHVKDGDGATPLHYAVQV-----GAMQSVKLLIKYNVDVNVAD-NE  265 (328)
Q Consensus       193 i~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpLh~A~~~-----g~~~iv~~Ll~~ga~in~~d-~~  265 (328)
                      +|..|.+|+|+||||+.++++++|+.||+.| ++++.+++.|.||+++|+..     .+..+|..|+..| ++|++- ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            6888999999999999999999999999998 78999999999999998853     4678899998874 788774 46


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          266 GWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       266 g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      |+|+|++|+.+|+.++|+.||..|||+|++|.+|.|+|+.|+.+||    .+|+++|+..|.
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGh----kEivklLLA~p~  397 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGH----KEIVKLLLAVPS  397 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhCh----HHHHHHHhccCc
Confidence            9999999999999999999999999999999999999999999999    999999998763

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.84  E-value=6e-21  Score=166.14  Aligned_cols=137  Identities=26%  Similarity=0.333  Sum_probs=89.9

Q ss_pred             HHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHH
Q 020274          136 LLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAV  215 (328)
Q Consensus       136 l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~  215 (328)
                      ++.-+++|+.-.|+..|+.... +++.-|..|.+|||+||..|+..+|+.|+..|+.+|..+....||||+|+..|+.++
T Consensus         4 if~wcregna~qvrlwld~teh-dln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdi   82 (448)
T KOG0195|consen    4 IFGWCREGNAFQVRLWLDDTEH-DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDI   82 (448)
T ss_pred             hhhhhhcCCeEEEEEEecCccc-ccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHH
Confidence            4455555555555544443221 122235566777777777777777777777777777766666677777777777777


Q ss_pred             HHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHH
Q 020274          216 ISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIA  273 (328)
Q Consensus       216 v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A  273 (328)
                      |+.|+++.+|+|..+..|+||||+||..|.-.+++-|+..|+.+++.++.|.|||..|
T Consensus        83 vqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   83 VQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             HHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhh
Confidence            7777777777777777777777777777777777777777777777777777777665

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=1.2e-20  Score=176.43  Aligned_cols=153  Identities=29%  Similarity=0.398  Sum_probs=141.7

Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHH
Q 020274          170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSV  249 (328)
Q Consensus       170 ~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv  249 (328)
                      .+.-|+..|..+-|+.|+..|+.++..+.+|.|+||-+|.-.+.+||++|+++|++||..|..||||||.|+..|+..++
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~  122 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIV  122 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHH
Confidence            46778889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCcc-----------------------------------------------------------ccCCCCCcHH
Q 020274          250 KLLIKYNVDVN-----------------------------------------------------------VADNEGWTPL  270 (328)
Q Consensus       250 ~~Ll~~ga~in-----------------------------------------------------------~~d~~g~TpL  270 (328)
                      ++|+++|+++-                                                           +.+..|.|+|
T Consensus       123 ~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~l  202 (527)
T KOG0505|consen  123 EYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATAL  202 (527)
T ss_pred             HHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHH
Confidence            99999876532                                                           3455588999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          271 HIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       271 ~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      |.|+..|..++.++|+++|.+++++|.+|+||||.|+..|+    .++.++|-.+.
T Consensus       203 HvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~----~~~~elL~~~g  254 (527)
T KOG0505|consen  203 HVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQ----EDACELLVEHG  254 (527)
T ss_pred             HHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhh----HhHHHHHHHhh
Confidence            99999999999999999999999999999999999999999    88888876543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.83  E-value=8e-21  Score=165.38  Aligned_cols=135  Identities=30%  Similarity=0.327  Sum_probs=122.0

Q ss_pred             HhCCHHHHHHHHH-CCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHh
Q 020274          176 LSMQIRYMDMLLD-GGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIK  254 (328)
Q Consensus       176 ~~g~~~~v~~Ll~-~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  254 (328)
                      ..|+.=.|++.++ .--|.|.-|..|.+|||+||..|+..+++.|+.+|+.+|..+....||||+|+..||.++|+.|++
T Consensus         9 regna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~   88 (448)
T KOG0195|consen    9 REGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLS   88 (448)
T ss_pred             hcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHH
Confidence            3444434444443 556788899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 020274          255 YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG  310 (328)
Q Consensus       255 ~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g  310 (328)
                      +.+|+|..+..|.|||||||.-|...|++-|+..||-+++.|++|.|||+.|.-.-
T Consensus        89 ~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l  144 (448)
T KOG0195|consen   89 RKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPML  144 (448)
T ss_pred             HhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHH
Confidence            99999999999999999999999999999999999999999999999999885443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.82  E-value=8.7e-20  Score=187.30  Aligned_cols=146  Identities=22%  Similarity=0.202  Sum_probs=126.8

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHC--CCCCCccCCCCCcHHH-HHHHcCCHHHHHHHHHCCCCC---------------
Q 020274          165 TAKWRPLQTLTLSMQIRYMDMLLDG--GLDIDSVDKDGLTALH-KAIIGKKEAVISHLLRKGANP---------------  226 (328)
Q Consensus       165 ~~g~t~L~~A~~~g~~~~v~~Ll~~--gadi~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~d~---------------  226 (328)
                      ..++..++.|+..|+.+.++.+++.  +.++|..|..|+|||| .|+.+++.+++++|+++|+..               
T Consensus        15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~   94 (743)
T TIGR00870        15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYV   94 (743)
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccH
Confidence            4568899999999999999999998  8999999999999999 888899999999999988410               


Q ss_pred             -------------C--------------CCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccC--------------CC
Q 020274          227 -------------H--------------VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD--------------NE  265 (328)
Q Consensus       227 -------------~--------------~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d--------------~~  265 (328)
                                   .              .....|.||||+|+..|+.++|++|+++|++++.++              ..
T Consensus        95 ~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~  174 (743)
T TIGR00870        95 DAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYH  174 (743)
T ss_pred             HHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccc
Confidence                         0              011358899999999999999999999999988653              25


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 020274          266 GWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG  310 (328)
Q Consensus       266 g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g  310 (328)
                      |.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..+
T Consensus       175 g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       175 GESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             cccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence            889999999999999999999999999999999999999999886

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.81  E-value=8.9e-19  Score=138.10  Aligned_cols=123  Identities=43%  Similarity=0.658  Sum_probs=84.8

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHH
Q 020274          196 VDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ  275 (328)
Q Consensus       196 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~  275 (328)
                      ++..|.||||+|+..++.+++++|++.|.+.+.++..|.||||.|+..++.+++++|+.+|+.++..+..|.||+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            34556677777777777777777777766666666667777777777777777777777766666666666777777777


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHH
Q 020274          276 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL  322 (328)
Q Consensus       276 ~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL  322 (328)
                      .++.+++++|+.+|.+++..+..|.||+++|+..++    .+++++|
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~L  125 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGH----LEVVKLL  125 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCC----HHHHHHh
Confidence            777777777777776666777777777777777665    6666655

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.81  E-value=2.1e-19  Score=135.01  Aligned_cols=89  Identities=39%  Similarity=0.593  Sum_probs=64.1

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHH
Q 020274          204 LHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAK  283 (328)
Q Consensus       204 L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~  283 (328)
                      ||+||..|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            5777777777777777777766655    667777777777777777777777777777777777777777777777777


Q ss_pred             HHHHcCCCCCCCC
Q 020274          284 VLLINGADKSRKT  296 (328)
Q Consensus       284 ~Ll~~gad~~~~d  296 (328)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            7777777777654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.80  E-value=2.3e-18  Score=135.76  Aligned_cols=123  Identities=37%  Similarity=0.601  Sum_probs=118.4

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 020274          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV  243 (328)
Q Consensus       164 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~  243 (328)
                      +..|+||||.|+..++.+++++|++.|.+.+..+..|.||||.|+..+..+++++|++.|++++..+..|.||+|+|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 020274          244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL  286 (328)
Q Consensus       244 g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll  286 (328)
                      ++.+++++|+.+|.+++..+..|.|||++|...++.+++++|+
T Consensus        84 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          84 GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999999999999999999999999999884

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.80  E-value=4.1e-19  Score=173.51  Aligned_cols=188  Identities=21%  Similarity=0.246  Sum_probs=151.6

Q ss_pred             HHHHHHHHhhChHHHHHHHhcC-------CCCCCCCCCCCCCcHHHHHHHh---CCHHHHHHHHHCCCC-CCc----cCC
Q 020274          134 EDLLKEVEQLLEPEEREILNQN-------ATPNLGKISTAKWRPLQTLTLS---MQIRYMDMLLDGGLD-IDS----VDK  198 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g-------~~~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~gad-i~~----~d~  198 (328)
                      ..++.+..++..+....++..+       .+-.++.+..-|.|.||.|..+   ++.++++.|++.-.. +|.    -..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            3444444444444444444433       2344555677899999999984   556899999985322 221    134


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-----------------------CCCChHHHHHHHcCCHHHHHHHHhC
Q 020274          199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKD-----------------------GDGATPLHYAVQVGAMQSVKLLIKY  255 (328)
Q Consensus       199 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d-----------------------~~g~tpLh~A~~~g~~~iv~~Ll~~  255 (328)
                      .|.||||.|+.+.+.++|++|++.|||++++.                       ..|..||-+|+..++.+|+++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            69999999999999999999999999997641                       1377899999999999999999999


Q ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD--KSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       256 ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad--~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      |||++++|..|+|.||..+.+-..++-.+++++|++  ...+|+.|.|||.+|++.|+    .+|.+.+.+.
T Consensus       263 gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk----~emf~~ile~  330 (782)
T KOG3676|consen  263 GADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGK----KEMFQHILER  330 (782)
T ss_pred             CCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhh----HHHHHHHHHh
Confidence            999999999999999999999999999999999999  99999999999999999999    7777765543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.80  E-value=7.1e-19  Score=132.09  Aligned_cols=89  Identities=35%  Similarity=0.545  Sum_probs=83.1

Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHH
Q 020274          171 LQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVK  250 (328)
Q Consensus       171 L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~  250 (328)
                      ||+|+..|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999999999999988887    889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCccccC
Q 020274          251 LLIKYNVDVNVAD  263 (328)
Q Consensus       251 ~Ll~~ga~in~~d  263 (328)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999999998775

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.73  E-value=5.1e-17  Score=158.98  Aligned_cols=146  Identities=20%  Similarity=0.261  Sum_probs=129.9

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccC-----------------------CCCCcHHHHHHHcCCHHHHHHHH
Q 020274          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD-----------------------KDGLTALHKAIIGKKEAVISHLL  220 (328)
Q Consensus       164 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d-----------------------~~g~t~L~~A~~~g~~~~v~~Ll  220 (328)
                      ...|.||||+|+.+.+.++|++|++.|||++++.                       +.|..||.+||..++.+++++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            4579999999999999999999999999998641                       24779999999999999999999


Q ss_pred             HCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCC--ccccCCCCCcHHHHHHHcCCHHHHHHHHHc----------
Q 020274          221 RKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD--VNVADNEGWTPLHIAIQSRNRDIAKVLLIN----------  288 (328)
Q Consensus       221 ~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~--in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~----------  288 (328)
                      ++|+|++.+|..|+|.||..+..-..++..+++++|++  ...+|+.|.|||.+|++.|..+|.+.+++.          
T Consensus       261 ~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGp  340 (782)
T KOG3676|consen  261 AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGP  340 (782)
T ss_pred             hcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecc
Confidence            99999999999999999999999999999999999999  889999999999999999999999999988          


Q ss_pred             ----CCCCCCCCCC--CCcHHHHHHHc
Q 020274          289 ----GADKSRKTKD--GKTALDMSLCY  309 (328)
Q Consensus       289 ----gad~~~~d~~--G~TpL~~A~~~  309 (328)
                          ..+++..|.-  -.++|.+.+..
T Consensus       341 vtsslYpL~~iDT~~n~~SvLeivvyg  367 (782)
T KOG3676|consen  341 VTSSLYPLNSIDTIGNENSVLEIVVYG  367 (782)
T ss_pred             cccccccchhcccccchhhhhhhhhcC
Confidence                2345555543  45778777765

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.72  E-value=1.2e-16  Score=138.67  Aligned_cols=128  Identities=31%  Similarity=0.432  Sum_probs=110.3

Q ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC-----HHHHHHHHHCCC---CCCCCCCCC
Q 020274          162 KISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK-----EAVISHLLRKGA---NPHVKDGDG  233 (328)
Q Consensus       162 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~---d~~~~d~~g  233 (328)
                      ..+..+.++++.++..+...++++++..|++++.++..|.||||+|+..++     .+++++|++.|+   ..+.++..|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            345667888899998888888888888888888888889999999998888     888999998888   556668888


Q ss_pred             ChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020274          234 ATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING  289 (328)
Q Consensus       234 ~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  289 (328)
                      .||||+|+..|+.+++++|+..|++++..+..|.|++++|+..++.++++.|+..+
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999888888889999888888888888889999999888888888888865

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.70  E-value=1.3e-15  Score=132.24  Aligned_cols=128  Identities=38%  Similarity=0.530  Sum_probs=119.2

Q ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC-----HHHHHHHHhCCC---CccccCC
Q 020274          193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA-----MQSVKLLIKYNV---DVNVADN  264 (328)
Q Consensus       193 i~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~-----~~iv~~Ll~~ga---~in~~d~  264 (328)
                      ....+..+.++++.++..+...++.+++..|++++.++..|.||||+|+..++     .+++++|++.|+   ..+.++.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            34556668999999999999999999999999999999999999999999999     999999999999   6666799


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          265 EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       265 ~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      .|.||||+|+..|+.+++++|+..|++++.++..|.|+++.|+..++    .+++++|..
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~l~~  201 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGR----IELVKLLLD  201 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccch----HHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999    777777765

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.67  E-value=3e-16  Score=114.60  Aligned_cols=100  Identities=29%  Similarity=0.456  Sum_probs=56.0

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHH
Q 020274          204 LHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAK  283 (328)
Q Consensus       204 L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~  283 (328)
                      +.|++.+|..+-|+..+..|.++|.. ..|++|||+|+.+|+.+++++|+..|++++.+|+.|-|||..|+..||.++|+
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVk   84 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVK   84 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHH
Confidence            34555555555555555555554432 25555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCCCCCCCCCCCCcHHH
Q 020274          284 VLLINGADKSRKTKDGKTALD  304 (328)
Q Consensus       284 ~Ll~~gad~~~~d~~G~TpL~  304 (328)
                      +||+.||+...+.-+|.+.+.
T Consensus        85 lLL~~GAdrt~~~PdG~~~~e  105 (117)
T KOG4214|consen   85 LLLQNGADRTIHAPDGTALIE  105 (117)
T ss_pred             HHHHcCcccceeCCCchhHHh
Confidence            555555555555555554444

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.67  E-value=3.8e-16  Score=114.08  Aligned_cols=103  Identities=26%  Similarity=0.315  Sum_probs=92.2

Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHH
Q 020274          170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSV  249 (328)
Q Consensus       170 ~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv  249 (328)
                      -..|++.+|.++-|+..+..|.++|..- .|++|||+|+-.|+.+++++|+..|++++.+|+.|-|||..|+..||..||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            3678899999999999999998887653 799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCccccCCCCCcHHHHH
Q 020274          250 KLLIKYNVDVNVADNEGWTPLHIA  273 (328)
Q Consensus       250 ~~Ll~~ga~in~~d~~g~TpL~~A  273 (328)
                      ++||+.|++-.....+|.+.+..+
T Consensus        84 klLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             HHHHHcCcccceeCCCchhHHhhc
Confidence            999999999999888887766543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.66  E-value=6.3e-17  Score=161.23  Aligned_cols=189  Identities=23%  Similarity=0.273  Sum_probs=161.5

Q ss_pred             cccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCcc-CCCCCcHHHHHHH
Q 020274          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSV-DKDGLTALHKAII  209 (328)
Q Consensus       131 ~~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~-d~~g~t~L~~A~~  209 (328)
                      .....|-.++..|..+.+..++.+|.+...  ++..|.+||.+|+..||..+|+.|+.+.++++.. |..+.|+|.+||.
T Consensus       756 n~~t~LT~acaggh~e~vellv~rganieh--rdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacs  833 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGANIEH--RDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACS  833 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhcccccc--cccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecC
Confidence            344556778888889999999999887655  4889999999999999999999999999998865 6678899999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccC--CCCCcHHHHHHHcCCHHHHHHHHH
Q 020274          210 GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD--NEGWTPLHIAIQSRNRDIAKVLLI  287 (328)
Q Consensus       210 ~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d--~~g~TpL~~A~~~g~~~iv~~Ll~  287 (328)
                      .|+.++|++||..|++-..++-...|||.+|...|..++|++||.+|+.||.+.  +.|-.||++|...||...++.|++
T Consensus       834 ggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~  913 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQ  913 (2131)
T ss_pred             CCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhc
Confidence            999999999999999988888889999999999999999999999998888764  468889999999999999999999


Q ss_pred             cCCCCCCCC-CCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          288 NGADKSRKT-KDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       288 ~gad~~~~d-~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      .|-|+|..- .+-+|+|.+|+..|+    .+++.+|+..
T Consensus       914 ~gsdiNaqIeTNrnTaltla~fqgr----~evv~lLLa~  948 (2131)
T KOG4369|consen  914 PGSDINAQIETNRNTALTLALFQGR----PEVVFLLLAA  948 (2131)
T ss_pred             ccchhccccccccccceeeccccCc----chHHHHHHHH
Confidence            998888763 345689999999988    7888877654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.61  E-value=4.8e-15  Score=149.83  Aligned_cols=105  Identities=30%  Similarity=0.446  Sum_probs=95.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHH
Q 020274          203 ALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA  282 (328)
Q Consensus       203 ~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv  282 (328)
                      .|+.|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHc-------CCCCCCCCCCCCcHHHHHH
Q 020274          283 KVLLIN-------GADKSRKTKDGKTALDMSL  307 (328)
Q Consensus       283 ~~Ll~~-------gad~~~~d~~G~TpL~~A~  307 (328)
                      ++|+.+       |++++..+..|.+|+..+.
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999988       8898888888888877655

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.59  E-value=4.5e-16  Score=155.26  Aligned_cols=178  Identities=22%  Similarity=0.210  Sum_probs=118.3

Q ss_pred             HhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccC-CCCCcHHHHHHHcCCHHHHHHH
Q 020274          141 EQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD-KDGLTALHKAIIGKKEAVISHL  219 (328)
Q Consensus       141 ~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d-~~g~t~L~~A~~~g~~~~v~~L  219 (328)
                      .-|..+.+..+|..|..++...-...|..||++|...|+...++.|++.|.|+|..- .+.+|+|-+|+..|+.++|.+|
T Consensus       866 Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lL  945 (2131)
T KOG4369|consen  866 SGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLL  945 (2131)
T ss_pred             CcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHH
Confidence            344455566666666666655555666666666666666666666666666666532 2344555556656666666666


Q ss_pred             HHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCC-----------------------------------ccccCC
Q 020274          220 LRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD-----------------------------------VNVADN  264 (328)
Q Consensus       220 l~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~-----------------------------------in~~d~  264 (328)
                      |.+.+++..+-+.|.|||+-++..|.+++=.+||..|+|                                   +..++.
T Consensus       946 La~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~Nk 1025 (2131)
T KOG4369|consen  946 LAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNK 1025 (2131)
T ss_pred             HHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccC
Confidence            655555555555555665555555555555555555554                                   446777


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHH
Q 020274          265 EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL  322 (328)
Q Consensus       265 ~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL  322 (328)
                      +|+|+|.+|+..|+...+.+|+++++|++.+|..-.|++..|.+.|+    .+||+++
T Consensus      1026 kG~T~Lwla~~Gg~lss~~il~~~~ad~d~qdnr~~S~~maafRKgh----~~iVk~m 1079 (2131)
T KOG4369|consen 1026 KGCTVLWLASAGGALSSCPILVSSVADADQQDNRTNSRTMAAFRKGH----FAIVKKM 1079 (2131)
T ss_pred             CCCcccchhccCCccccchHHhhcccChhhhhcccccccHHHHHhch----hheeccc
Confidence            88888888888888888888888888888888888888888888888    6666544

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.56  E-value=1.8e-14  Score=145.63  Aligned_cols=106  Identities=32%  Similarity=0.354  Sum_probs=94.4

Q ss_pred             cHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHH
Q 020274          169 RPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQS  248 (328)
Q Consensus       169 t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~i  248 (328)
                      ..|+.|+..|+.+++++|++.|+++|.+|..|.||||+||..|+.+++++|+++|++++.+|..|.||||+|+..|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            35888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC-------CCCccccCCCCCcHHHHHH
Q 020274          249 VKLLIKY-------NVDVNVADNEGWTPLHIAI  274 (328)
Q Consensus       249 v~~Ll~~-------ga~in~~d~~g~TpL~~A~  274 (328)
                      +++|+.+       |++++..+..|.+|+..+.
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999988       8888888877777766554

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.56  E-value=3.8e-15  Score=101.80  Aligned_cols=55  Identities=42%  Similarity=0.633  Sum_probs=27.8

Q ss_pred             HHhCC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 020274          252 LIKYN-VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS  306 (328)
Q Consensus       252 Ll~~g-a~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A  306 (328)
                      ||++| ++++.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56666 77788888888888888888888888888888888888888888888876

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.54  E-value=5.7e-14  Score=122.71  Aligned_cols=119  Identities=19%  Similarity=0.240  Sum_probs=82.0

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCChHHHHHHHcCCH
Q 020274          168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHV-KDGDGATPLHYAVQVGAM  246 (328)
Q Consensus       168 ~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~-~d~~g~tpLh~A~~~g~~  246 (328)
                      ..||.-++-.+..+-+..||..--.+|.+|..|.|+|..|+..|+.++|++||+.|+|+|. ++..+.||||+|+..|+.
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~   92 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQ   92 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCc
Confidence            4567777777777777777666555677777777777777777777777777777777763 344566777777777777


Q ss_pred             HHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 020274          247 QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL  286 (328)
Q Consensus       247 ~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll  286 (328)
                      ++..+|++.|+.....+.-|+|+-..|+.-|+.++|..+-
T Consensus        93 dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   93 DVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             hHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            7777777777777777777777777777777777766543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.50  E-value=2.5e-14  Score=97.77  Aligned_cols=55  Identities=44%  Similarity=0.717  Sum_probs=23.7

Q ss_pred             HHHCC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHH
Q 020274          219 LLRKG-ANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIA  273 (328)
Q Consensus       219 Ll~~g-~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A  273 (328)
                      ||++| ++++.+|..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45555 66666666677777777777777777777766677777777777777665

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.50  E-value=1.8e-13  Score=119.60  Aligned_cols=125  Identities=18%  Similarity=0.214  Sum_probs=111.9

Q ss_pred             cccccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCcc-CCCCCcHHHHH
Q 020274          129 ISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSV-DKDGLTALHKA  207 (328)
Q Consensus       129 ~~~~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~-d~~g~t~L~~A  207 (328)
                      ++.....++.+|.+++.+....||..-.  +++.+|..|.++|..|++.|+.++|++||+.|+|+|.. +..+.||||+|
T Consensus         9 ld~~~~~Lle~i~Kndt~~a~~LLs~vr--~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFA   86 (396)
T KOG1710|consen    9 LDAPKSPLLEAIDKNDTEAALALLSTVR--QVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFA   86 (396)
T ss_pred             ccchhhHHHHHHccCcHHHHHHHHHHhh--hhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHH
Confidence            4566789999999999999999998733  35566999999999999999999999999999999965 45689999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhC
Q 020274          208 IIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY  255 (328)
Q Consensus       208 ~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  255 (328)
                      +.+|+.++.++|++.|+.+...+.-|+|+-..|+.-|+.++|..+-.+
T Consensus        87 ALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   87 ALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999999999999999999999999999999999999876443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=9.8e-14  Score=129.77  Aligned_cols=116  Identities=23%  Similarity=0.289  Sum_probs=104.0

Q ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHH
Q 020274          171 LQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVK  250 (328)
Q Consensus       171 L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~  250 (328)
                      |.-|+..|.+++|+.++..--|+...+..|.|+||-|++.||.+||++||+.|+++|..|.+||||||+|+.++++.+++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            55688899999999999988899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCcccc-CCCCCcHHHHHH--HcCCHHHHHHHH
Q 020274          251 LLIKYNVDVNVA-DNEGWTPLHIAI--QSRNRDIAKVLL  286 (328)
Q Consensus       251 ~Ll~~ga~in~~-d~~g~TpL~~A~--~~g~~~iv~~Ll  286 (328)
                      .|++.|+-+-+. -.++.||..-+-  +.|...|.++|.
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            999999887554 346788887653  467888999984

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.47  E-value=1.1e-13  Score=93.79  Aligned_cols=51  Identities=47%  Similarity=0.770  Sum_probs=17.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 020274          235 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL  285 (328)
Q Consensus       235 tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~L  285 (328)
                      ||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus         3 t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    3 TPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             BHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            334444444444444444433333333333344444444444444433333

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=1.9e-13  Score=127.88  Aligned_cols=116  Identities=30%  Similarity=0.450  Sum_probs=102.5

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHH
Q 020274          204 LHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAK  283 (328)
Q Consensus       204 L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~  283 (328)
                      |.-|+..|-+++|+..+..--|+...+..|.|+||-|+..||.+||++||+.|+++|..|.+||||||+|+.++++-+++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            44578899999999999988899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCC-CCCCcHHHHHHH--cCCCCChHHHHHHHh
Q 020274          284 VLLINGADKSRKT-KDGKTALDMSLC--YGRDFKSYDLAKLLK  323 (328)
Q Consensus       284 ~Ll~~gad~~~~d-~~G~TpL~~A~~--~g~~~~~~~i~~lL~  323 (328)
                      .|+++|+-+-+.. .++.||.+.+-.  .|+    ..+.+||.
T Consensus       634 qLVe~GaavfAsTlSDmeTa~eKCee~eeGY----~~CsqyL~  672 (752)
T KOG0515|consen  634 QLVESGAAVFASTLSDMETAAEKCEEMEEGY----DQCSQYLY  672 (752)
T ss_pred             HHHhccceEEeeecccccchhhhcchhhhhH----HHHHHHHH
Confidence            9999998876554 567899887653  344    67777775

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.45  E-value=2e-13  Score=92.53  Aligned_cols=54  Identities=41%  Similarity=0.634  Sum_probs=28.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHH
Q 020274          200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI  253 (328)
Q Consensus       200 g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll  253 (328)
                      |+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            455666666666666666666666666655556666666666666666665554

...

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.03  E-value=1.1e-10  Score=114.55  Aligned_cols=128  Identities=27%  Similarity=0.363  Sum_probs=97.7

Q ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHH
Q 020274          193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDG-DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLH  271 (328)
Q Consensus       193 i~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~-~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~  271 (328)
                      .|.+|..|+|+||+|+..+...++++||++|++++.+|. .|+||||.|+..|+++++-+||.+|+.+.++|..|..||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            678899999999999999999999999999999999887 7999999999999999999999999999999999999998


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCC-CcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          272 IAIQSRNRDIAKVLLINGADKSRKTKDG-KTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       272 ~A~~~g~~~iv~~Ll~~gad~~~~d~~G-~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      ..++-....+.-.+-    ++|..=..| ++-..+-+.+++.....+.+.|++.
T Consensus       125 ~~~r~~~~~i~~~~d----~pndvy~wG~N~N~tLGign~~~~~~Pe~Vdlf~~  174 (1267)
T KOG0783|consen  125 FLSRVLSSTIHPVLD----LPNDVYGWGTNVNNTLGIGNGKEPSSPERVDLFKT  174 (1267)
T ss_pred             HHhhccccccccccC----CccceeEecccccccccccCCCCCCChHHhHHHHh
Confidence            877643333322111    111111111 1223355667777778888888764

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.98  E-value=2.8e-10  Score=111.89  Aligned_cols=96  Identities=24%  Similarity=0.334  Sum_probs=76.5

Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCC-CCcHHHHHHHcCCHHHHHHHHHCCCC
Q 020274          147 EEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKD-GLTALHKAIIGKKEAVISHLLRKGAN  225 (328)
Q Consensus       147 ~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~d  225 (328)
                      .++..+.+...--.+..|..|+|+||+|+..+...++++||++|++++.+|.. |+||||.|+..|+++++-+||++|+.
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            34444443333334556788889999999989899999999999988888875 88999999999999999999999988


Q ss_pred             CCCCCCCCChHHHHHHH
Q 020274          226 PHVKDGDGATPLHYAVQ  242 (328)
Q Consensus       226 ~~~~d~~g~tpLh~A~~  242 (328)
                      +..+|+.|.+||...+.
T Consensus       112 L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             eEEecccCCCHHHHHhh
Confidence            88888889998887665

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.91  E-value=1.1e-09  Score=101.73  Aligned_cols=92  Identities=24%  Similarity=0.365  Sum_probs=84.0

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHc
Q 020274          231 GDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN-GADKSRKTKDGKTALDMSLCY  309 (328)
Q Consensus       231 ~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad~~~~d~~G~TpL~~A~~~  309 (328)
                      ..+..++++|+..|.+..++-+.-.|.|++.+|.+.+|+||.|+..|+++++++|++. +.+++.+|+.|+|||+-|...
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhc
Confidence            3566789999999999999999999999999999999999999999999999999976 999999999999999999999


Q ss_pred             CCCCChHHHHHHHhhCC
Q 020274          310 GRDFKSYDLAKLLKILP  326 (328)
Q Consensus       310 g~~~~~~~i~~lL~~~~  326 (328)
                      ++    .+++++|..+.
T Consensus       584 ~h----~~v~k~L~~~~  596 (622)
T KOG0506|consen  584 KH----KEVVKLLEEAQ  596 (622)
T ss_pred             Cc----HHHHHHHHHHh
Confidence            98    89999998753

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.89  E-value=6.7e-09  Score=97.08  Aligned_cols=84  Identities=30%  Similarity=0.439  Sum_probs=59.8

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHH
Q 020274          204 LHKAIIGKKEAVISHLLRKGANPHVKDG-DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA  282 (328)
Q Consensus       204 L~~A~~~g~~~~v~~Ll~~g~d~~~~d~-~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv  282 (328)
                      ||..++.|+.++.-.||..|+++|..+. .|.||||.|+..|+.--+++|+-+|||++..|.+|.||+.||-..||.++.
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~la  216 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELA  216 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHH
Confidence            6667777777777777777777776554 577777777777777777777777777777777777777777777776666


Q ss_pred             HHHHH
Q 020274          283 KVLLI  287 (328)
Q Consensus       283 ~~Ll~  287 (328)
                      +-|++
T Consensus       217 eRl~e  221 (669)
T KOG0818|consen  217 ERLVE  221 (669)
T ss_pred             HHHHH
Confidence            66543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.88  E-value=8.8e-09  Score=96.34  Aligned_cols=94  Identities=23%  Similarity=0.236  Sum_probs=83.6

Q ss_pred             CCCCCCCCcH------HHHHHHhCCHHHHHHHHHCCCCCCccCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Q 020274          161 GKISTAKWRP------LQTLTLSMQIRYMDMLLDGGLDIDSVDKD-GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDG  233 (328)
Q Consensus       161 ~~~~~~g~t~------L~~A~~~g~~~~v~~Ll~~gadi~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g  233 (328)
                      ...|.+|.+.      ||.++..|+++..-.||..|+++|..+.. |.||||.|+..|+..-+++|+-+|+|++..|..|
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G  200 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG  200 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence            3445555554      89999999999999999999999988765 9999999999999999999999999999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHh
Q 020274          234 ATPLHYAVQVGAMQSVKLLIK  254 (328)
Q Consensus       234 ~tpLh~A~~~g~~~iv~~Ll~  254 (328)
                      +||+.+|-..||.++.+-|++
T Consensus       201 mtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHH
Confidence            999999999999998877775

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.87  E-value=7.3e-09  Score=98.26  Aligned_cols=122  Identities=25%  Similarity=0.241  Sum_probs=80.4

Q ss_pred             ccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCC--CCccCCCCCcHHHHHHH
Q 020274          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLD--IDSVDKDGLTALHKAII  209 (328)
Q Consensus       132 ~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad--i~~~d~~g~t~L~~A~~  209 (328)
                      ..+.++.++..++.-..++.-..|.+....  +....+.||+|+..|+-++|+++|++|..  ++..+..|.|+||.|+.
T Consensus       866 iseeil~av~~~D~~klqE~h~~gg~ll~~--~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~  943 (1004)
T KOG0782|consen  866 ISEEILRAVLSSDLMKLQETHLNGGSLLIQ--GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAAC  943 (1004)
T ss_pred             ccHHHHHHHHhccHHHHHHHHhcCCceEee--CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHH
Confidence            445577777777766666666666554433  45566677777777777777777777654  45556667777777777


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhC
Q 020274          210 GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY  255 (328)
Q Consensus       210 ~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  255 (328)
                      .++..++++|++.|+.+...|..|.||-..|-+.|..+++.+|-.+
T Consensus       944 ~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            7777777777777776666666777777777666777666666543

>PF13606 Ank_3: Ankyrin repeat

Probab=98.87  E-value=3.2e-09  Score=62.48  Aligned_cols=29  Identities=48%  Similarity=0.669  Sum_probs=22.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 020274          265 EGWTPLHIAIQSRNRDIAKVLLINGADKS  293 (328)
Q Consensus       265 ~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  293 (328)
                      +|+||||+||..|+.+++++|+++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47777777777777777777777777776

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.87  E-value=8.9e-09  Score=97.67  Aligned_cols=115  Identities=27%  Similarity=0.383  Sum_probs=93.1

Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCC--ccccCCCCCcHHHHHHHcCCHHHH
Q 020274          205 HKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD--VNVADNEGWTPLHIAIQSRNRDIA  282 (328)
Q Consensus       205 ~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~--in~~d~~g~TpL~~A~~~g~~~iv  282 (328)
                      ..|+..+..--++.+..+|.++-.++.+..+.||+|+..|+-++|+++|.+|..  +++.+..|.|+||.|+..++..++
T Consensus       871 l~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc  950 (1004)
T KOG0782|consen  871 LRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVC  950 (1004)
T ss_pred             HHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHH
Confidence            444455554445555566777778888888999999999999999999999764  577788899999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHh
Q 020274          283 KVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  323 (328)
Q Consensus       283 ~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~  323 (328)
                      ++|++.||.+...|..|.||-.-|-..|.    .+++.+|.
T Consensus       951 ~~lvdagasl~ktd~kg~tp~eraqqa~d----~dlaayle  987 (1004)
T KOG0782|consen  951 QLLVDAGASLRKTDSKGKTPQERAQQAGD----PDLAAYLE  987 (1004)
T ss_pred             HHHHhcchhheecccCCCChHHHHHhcCC----chHHHHHh
Confidence            99999999999999999999999888887    67777664

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.84  E-value=4.3e-09  Score=97.95  Aligned_cols=88  Identities=27%  Similarity=0.285  Sum_probs=44.2

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCC
Q 020274          167 KWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRK-GANPHVKDGDGATPLHYAVQVGA  245 (328)
Q Consensus       167 g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpLh~A~~~g~  245 (328)
                      +..++++|+..|++..++.+.-.|.|++.+|++.+|+||.||..|+.+++++|++. +.+++.+|+.|+|||.-|...+|
T Consensus       506 ~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h  585 (622)
T KOG0506|consen  506 TVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKH  585 (622)
T ss_pred             chhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCc
Confidence            33444555555555555555545555555555555555555555555555555442 44445555555555555555555


Q ss_pred             HHHHHHHHh
Q 020274          246 MQSVKLLIK  254 (328)
Q Consensus       246 ~~iv~~Ll~  254 (328)
                      .+++++|-+
T Consensus       586 ~~v~k~L~~  594 (622)
T KOG0506|consen  586 KEVVKLLEE  594 (622)
T ss_pred             HHHHHHHHH
Confidence            555554444

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.82  E-value=6.8e-09  Score=62.60  Aligned_cols=32  Identities=47%  Similarity=0.667  Sum_probs=24.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 020274          265 EGWTPLHIAIQSRNRDIAKVLLINGADKSRKT  296 (328)
Q Consensus       265 ~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d  296 (328)
                      +|.||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            47778888888888888888888888777766

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.76  E-value=2.4e-08  Score=95.06  Aligned_cols=89  Identities=34%  Similarity=0.461  Sum_probs=78.1

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC----CCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCH
Q 020274          204 LHKAIIGKKEAVISHLLRKGANPH----VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNR  279 (328)
Q Consensus       204 L~~A~~~g~~~~v~~Ll~~g~d~~----~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~  279 (328)
                      |..|.....+..+-+||.+|....    .-+..|+|+||+|+..|++.+.++|+-+|+|+..+|..|+|+|.||-..|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            555667777888889999986532    3456789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCC
Q 020274          280 DIAKVLLINGADK  292 (328)
Q Consensus       280 ~iv~~Ll~~gad~  292 (328)
                      +|+.+|+++|+-.
T Consensus       708 ec~d~llq~gcp~  720 (749)
T KOG0705|consen  708 ECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999999753

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.75  E-value=3.8e-08  Score=97.92  Aligned_cols=126  Identities=17%  Similarity=0.113  Sum_probs=108.3

Q ss_pred             ccccccHHHHHHHHhhChHHHHHHHhcCCC--CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHH
Q 020274          128 TISKYEEDLLKEVEQLLEPEEREILNQNAT--PNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALH  205 (328)
Q Consensus       128 ~~~~~~~~l~~ai~~~~~~~v~~lL~~g~~--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~  205 (328)
                      ..+.-+..++.+++.|+...|+++++....  .|+++.|.-|+++|++|+.+.+.+++++|++++..+       ..+|.
T Consensus        21 ~l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL   93 (822)
T KOG3609|consen   21 DLNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALL   93 (822)
T ss_pred             ccchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHH
Confidence            345566889999999999999999997766  788899999999999999999999999999987665       36899


Q ss_pred             HHHHcCCHHHHHHHHHCCCCC----------CCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCcc
Q 020274          206 KAIIGKKEAVISHLLRKGANP----------HVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVN  260 (328)
Q Consensus       206 ~A~~~g~~~~v~~Ll~~g~d~----------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in  260 (328)
                      +|+..|..++|+.++.+-...          ...-..+.|||.+||..++.+|+++||.+|+.+.
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            999999999999999874332          1223467899999999999999999999998764

>PF13606 Ank_3: Ankyrin repeat

Probab=98.74  E-value=1.5e-08  Score=59.62  Aligned_cols=28  Identities=25%  Similarity=0.386  Sum_probs=16.7

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCCCC
Q 020274          167 KWRPLQTLTLSMQIRYMDMLLDGGLDID  194 (328)
Q Consensus       167 g~t~L~~A~~~g~~~~v~~Ll~~gadi~  194 (328)
                      |+||||+||..|+.+++++||++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5566666666666666666666665554

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.72  E-value=4.1e-08  Score=93.45  Aligned_cols=89  Identities=26%  Similarity=0.375  Sum_probs=79.3

Q ss_pred             HHHHHHhCCHHHHHHHHHCCCC--CC--ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH
Q 020274          171 LQTLTLSMQIRYMDMLLDGGLD--ID--SVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAM  246 (328)
Q Consensus       171 L~~A~~~g~~~~v~~Ll~~gad--i~--~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  246 (328)
                      |.-|+...++..+-+||.+|..  +|  .-+.+|+|+||+||+.|++.+.++|+-+|+|+..+|..|+|+|.+|-+.|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            6678888888999999999865  33  2355689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCc
Q 020274          247 QSVKLLIKYNVDV  259 (328)
Q Consensus       247 ~iv~~Ll~~ga~i  259 (328)
                      +|+..|+++|+..
T Consensus       708 ec~d~llq~gcp~  720 (749)
T KOG0705|consen  708 ECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999998754

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.69  E-value=3.2e-08  Score=93.62  Aligned_cols=87  Identities=31%  Similarity=0.576  Sum_probs=65.7

Q ss_pred             cHHHHHHHcCCHHHHHHHH--HCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCH
Q 020274          202 TALHKAIIGKKEAVISHLL--RKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNR  279 (328)
Q Consensus       202 t~L~~A~~~g~~~~v~~Ll--~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~  279 (328)
                      .|||+++.....+-+..++  +.+..++.+|..|+||||+|+..|+...++.|+..|+++..+|+.|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            4578887766655444322  23456777788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHc
Q 020274          280 DIAKVLLIN  288 (328)
Q Consensus       280 ~iv~~Ll~~  288 (328)
                      .++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            877777654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.66  E-value=3.5e-08  Score=59.45  Aligned_cols=31  Identities=55%  Similarity=0.802  Sum_probs=16.7

Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCCCCccccC
Q 020274          233 GATPLHYAVQVGAMQSVKLLIKYNVDVNVAD  263 (328)
Q Consensus       233 g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d  263 (328)
                      |+||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            4555555555555555555555555555443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.65  E-value=7e-08  Score=91.32  Aligned_cols=110  Identities=25%  Similarity=0.251  Sum_probs=86.9

Q ss_pred             cHHHHHHHhCCHHHHHHHH--HCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH
Q 020274          169 RPLQTLTLSMQIRYMDMLL--DGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAM  246 (328)
Q Consensus       169 t~L~~A~~~g~~~~v~~Ll--~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  246 (328)
                      .|||+++.....+-...++  +.+..++.+|..|.||||+|+..|+...++.|+.+|+++..++..|++|||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            5699999988876655543  34567889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCccccCCCCCcHHHHH-HHcCCHHHHHHHHHcC
Q 020274          247 QSVKLLIKYNVDVNVADNEGWTPLHIA-IQSRNRDIAKVLLING  289 (328)
Q Consensus       247 ~iv~~Ll~~ga~in~~d~~g~TpL~~A-~~~g~~~iv~~Ll~~g  289 (328)
                      +++..++.+-           -....+ ...+...+++.|.+.+
T Consensus       102 q~i~~vlr~~-----------~~q~~~~~~~~~p~ll~~l~~~~  134 (560)
T KOG0522|consen  102 QIITEVLRHL-----------KYQAWEKWERRLPRLLAKLSEMP  134 (560)
T ss_pred             HHHHHHHHHh-----------HHHHHHHHHhcchHHHHHHHhCc
Confidence            9988888751           011111 1245566777776654

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.58  E-value=2.3e-07  Score=92.52  Aligned_cols=122  Identities=25%  Similarity=0.227  Sum_probs=102.2

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCC----CCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 020274          167 KWRPLQTLTLSMQIRYMDMLLDGG----LDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ  242 (328)
Q Consensus       167 g~t~L~~A~~~g~~~~v~~Ll~~g----adi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~  242 (328)
                      +.--...|+..|+...|+..++..    .++|..|.-|+++|+.|+.+.+.+++++|++++...       ..+|.+|+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~   97 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIA   97 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHH
Confidence            334577899999999999998732    468889999999999999999999999999997665       348999999


Q ss_pred             cCCHHHHHHHHhCCCCc----------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 020274          243 VGAMQSVKLLIKYNVDV----------NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRK  295 (328)
Q Consensus       243 ~g~~~iv~~Ll~~ga~i----------n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~  295 (328)
                      .|..++|++++.+....          ...-..+-|||.+||..++++|+++||.+|+.+...
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            99999999999984332          122334779999999999999999999999987544

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.52  E-value=2.1e-07  Score=94.54  Aligned_cols=152  Identities=20%  Similarity=0.205  Sum_probs=114.1

Q ss_pred             HHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCcHHHHHHHcCCHHH
Q 020274          137 LKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDG-GLDIDSVDKDGLTALHKAIIGKKEAV  215 (328)
Q Consensus       137 ~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-gadi~~~d~~g~t~L~~A~~~g~~~~  215 (328)
                      ..-+.....+...+++.....-........|++.||+++..+..-+++.+++- |......+..|...+|+++..|..-.
T Consensus       544 ~skv~~l~~~~~~r~~~~~~~~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA  623 (975)
T KOG0520|consen  544 ASKVVHLLNEWAYRLLKSISENLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWA  623 (975)
T ss_pred             HHHHHHHHHHHHHHHHhhHhhhccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCcee
Confidence            33333333333343444444444445567899999999999999999999996 77677778888889999554444444


Q ss_pred             HHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCcc------ccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020274          216 ISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVN------VADNEGWTPLHIAIQSRNRDIAKVLLIN  288 (328)
Q Consensus       216 v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in------~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  288 (328)
                      +....-.|..++.+|..|+||||+|+.+|+..++..|+..|++..      .....|.|+-.+|...|+..+.-+|-+.
T Consensus       624 ~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  624 FLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             EEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            444445789999999999999999999999999999998877644      3455699999999999998888877543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.50  E-value=1.1e-07  Score=96.71  Aligned_cols=81  Identities=40%  Similarity=0.516  Sum_probs=70.5

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 020274          231 GDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG  310 (328)
Q Consensus       231 ~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g  310 (328)
                      ..|.|+||.|+..+...++++|+++|+++|..|..|+||||.+...|+...+..|+++|+++++.+.+|++|+++|....
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhc
Confidence            35788899999888888999999999999988888999999999999998888888899999999999999999887764


Q ss_pred             C
Q 020274          311 R  311 (328)
Q Consensus       311 ~  311 (328)
                      +
T Consensus       734 ~  734 (785)
T KOG0521|consen  734 N  734 (785)
T ss_pred             c
Confidence            4

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.48  E-value=1.3e-07  Score=96.19  Aligned_cols=99  Identities=32%  Similarity=0.388  Sum_probs=85.8

Q ss_pred             CCCCCCcc--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCC
Q 020274          189 GGLDIDSV--DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEG  266 (328)
Q Consensus       189 ~gadi~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g  266 (328)
                      +++++|..  -..|.|+||.|+..+...++++|+++|+++|..|..|+||||.+...|+...+.+|+++|++.++.+..|
T Consensus       643 ~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~  722 (785)
T KOG0521|consen  643 HGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDG  722 (785)
T ss_pred             chhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccC
Confidence            44455542  2357899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHH
Q 020274          267 WTPLHIAIQSRNRDIAKVLLI  287 (328)
Q Consensus       267 ~TpL~~A~~~g~~~iv~~Ll~  287 (328)
                      .+||++|....+.+++-+|.-
T Consensus       723 ~~~l~~a~~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  723 KLPLDIAMEAANADIVLLLRL  743 (785)
T ss_pred             cchhhHHhhhccccHHHHHhh
Confidence            999999988877777666643

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.31  E-value=1.4e-06  Score=72.47  Aligned_cols=64  Identities=30%  Similarity=0.286  Sum_probs=32.4

Q ss_pred             CCCccCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhC
Q 020274          192 DIDSVDKDGLTALHKAIIGKKEAVISHLLRKG-ANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY  255 (328)
Q Consensus       192 di~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  255 (328)
                      ++|.+|..|+|+|+.|+..|..+.+.||+.+| +.+...|..|.+++.+|-..|...+++.|.++
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            44445555555555555555555555555555 44444555555555555555555555555444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.30  E-value=7.5e-07  Score=90.61  Aligned_cols=121  Identities=26%  Similarity=0.341  Sum_probs=98.4

Q ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHH
Q 020274          193 IDSVDKDGLTALHKAIIGKKEAVISHLLRK-GANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLH  271 (328)
Q Consensus       193 i~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~  271 (328)
                      .......|++.+|+++..+..-+++.+++- |......|..|.-.+|+++..|..-.+.+.+-.|..++++|..|+||||
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            445566799999999999999999999985 7666677778888888855544444444445568999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCC------CCCCCCCCcHHHHHHHcCCCC
Q 020274          272 IAIQSRNRDIAKVLLINGADK------SRKTKDGKTALDMSLCYGRDF  313 (328)
Q Consensus       272 ~A~~~g~~~iv~~Ll~~gad~------~~~d~~G~TpL~~A~~~g~~~  313 (328)
                      +|+.+|+..++..|+..|++.      +...-.|.|+-++|..+|+..
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~g  694 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKG  694 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccc
Confidence            999999999999999887754      444556999999999999943

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.25  E-value=2.9e-06  Score=70.68  Aligned_cols=74  Identities=22%  Similarity=0.247  Sum_probs=67.2

Q ss_pred             CCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCC-CCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q 020274          223 GANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN-VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT  296 (328)
Q Consensus       223 g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~g-a~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d  296 (328)
                      +.++|.+|..|||||+.|+..|..+.+.+|+.+| +.+-..|..|.+++.+|-+.|..+++..|.+.-.+-...+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~   76 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM   76 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence            5689999999999999999999999999999999 8999999999999999999999999999998755544443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.20  E-value=4.2e-06  Score=76.43  Aligned_cols=85  Identities=22%  Similarity=0.188  Sum_probs=68.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHH
Q 020274          202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI  281 (328)
Q Consensus       202 t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~i  281 (328)
                      --|..||+.|..+.|++|++.|.++|..|+...+||.+|+..||.++|++||++||-...-.-.|...+. ++.  +..|
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Y-gaL--nd~I  114 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHY-GAL--NDRI  114 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhh-hhh--hHHH
Confidence            4588999999999999999999999999999999999999999999999999999876655556665543 332  2345


Q ss_pred             HHHHHHcC
Q 020274          282 AKVLLING  289 (328)
Q Consensus       282 v~~Ll~~g  289 (328)
                      =++||...
T Consensus       115 R~mllsyd  122 (516)
T KOG0511|consen  115 RRMLLSYD  122 (516)
T ss_pred             HHHHHHHH
Confidence            55666553

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.18  E-value=4.9e-06  Score=76.01  Aligned_cols=67  Identities=22%  Similarity=0.250  Sum_probs=47.8

Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChH
Q 020274          170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATP  236 (328)
Q Consensus       170 ~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tp  236 (328)
                      -|..||..|+++.|+.|++.|.++|.+|....+||.+|+..||..+|++|+++|+-...-.-.|.-+
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC  105 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh
Confidence            4677777777777777777777777777777777777777777777777777777554433455544

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.52  E-value=0.0001  Score=69.74  Aligned_cols=62  Identities=29%  Similarity=0.278  Sum_probs=53.9

Q ss_pred             HHHHHHHHhCCCCcccc------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 020274          246 MQSVKLLIKYNVDVNVA------DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL  307 (328)
Q Consensus       246 ~~iv~~Ll~~ga~in~~------d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~  307 (328)
                      ...+++|.+++++.|..      +..--|+||||+..|...+|.+||+.|+|+.++|..|+||+.++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            56788888888777542      334569999999999999999999999999999999999999987

>smart00248 ANK ankyrin repeats

Probab=97.19  E-value=0.00075  Score=37.45  Aligned_cols=27  Identities=48%  Similarity=0.743  Sum_probs=17.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020274          266 GWTPLHIAIQSRNRDIAKVLLINGADK  292 (328)
Q Consensus       266 g~TpL~~A~~~g~~~iv~~Ll~~gad~  292 (328)
                      |.||+|+|+..++.+++++|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            556666666666666666666666654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.97  E-value=0.0013  Score=62.42  Aligned_cols=42  Identities=31%  Similarity=0.476  Sum_probs=23.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q 020274          200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAV  241 (328)
Q Consensus       200 g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~  241 (328)
                      -.|+||+|+..|..++|.+||+.|+|+..+|..|+||..++.
T Consensus       430 tsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  430 TSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            345555555555555555555555555555555555555544

>smart00248 ANK ankyrin repeats

Probab=96.87  E-value=0.0022  Score=35.44  Aligned_cols=27  Identities=30%  Similarity=0.446  Sum_probs=14.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCCC
Q 020274          167 KWRPLQTLTLSMQIRYMDMLLDGGLDI  193 (328)
Q Consensus       167 g~t~L~~A~~~g~~~~v~~Ll~~gadi  193 (328)
                      |.||||+|+..++.++++.|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            445555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.87  E-value=0.053  Score=46.92  Aligned_cols=46  Identities=33%  Similarity=0.404  Sum_probs=30.1

Q ss_pred             CHHHHHHHHhCC-CCcccc---CCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020274          245 AMQSVKLLIKYN-VDVNVA---DNEGWTPLHIAIQSRNRDIAKVLLINGA  290 (328)
Q Consensus       245 ~~~iv~~Ll~~g-a~in~~---d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  290 (328)
                      ...+++++|.+| +++|.+   -+.|.|-|.-|++.++.+++.+||++||
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA  278 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA  278 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence            455666666665 445432   3457777777777777777777777776

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.32  E-value=0.068  Score=46.28  Aligned_cols=111  Identities=16%  Similarity=0.251  Sum_probs=60.4

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccC----CCCCcHHHHHHH--cC
Q 020274          204 LHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD----NEGWTPLHIAIQ--SR  277 (328)
Q Consensus       204 L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d----~~g~TpL~~A~~--~g  277 (328)
                      |--|+...+.+-+.-++...-       .-.++|.+|+..+..+++-+|+.+ ......|    ..+.--+.|+..  ..
T Consensus       157 ledAV~AsN~~~i~~~VtdKk-------dA~~Am~~si~~~K~dva~~lls~-f~ft~~dv~~~~~~~ydieY~LS~h~a  228 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKK-------DAHQAMWLSIGNAKEDVALYLLSK-FNFTKQDVASMEKELYDIEYLLSEHSA  228 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchH-------HHHHHHHHHhcccHHHHHHHHHhh-cceecchhhhcCcchhhHHHHHhhcCC
Confidence            445565556655555544321       123466666666666666666654 1111111    112223444433  23


Q ss_pred             CHHHHHHHHHcC-CCCCC---CCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          278 NRDIAKVLLING-ADKSR---KTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       278 ~~~iv~~Ll~~g-ad~~~---~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      +..|+++++.+| +++|.   +-..|.|-|+-|++++.    .+++.+|.+++
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~----~emi~~Llk~G  277 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKN----SEMIAFLLKYG  277 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCc----HHHHHHHHHcC
Confidence            566777777776 45553   34557777777777777    67777776654

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.97  E-value=0.27  Score=41.31  Aligned_cols=138  Identities=12%  Similarity=0.041  Sum_probs=78.5

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH
Q 020274          167 KWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAM  246 (328)
Q Consensus       167 g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~  246 (328)
                      -+..|.-|+..+...+++..-+...+-   -...++.+-.||...+.++|+|+-+.   ....  +-.+..-+|....+.
T Consensus        46 ~~CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~qkydiV~WI~qn---L~i~--~~~~iFdIA~~~kDl  117 (192)
T PF03158_consen   46 MWCLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEEQKYDIVKWIGQN---LHIY--NPEDIFDIAFAKKDL  117 (192)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHHccccHHHHHhhc---cCCC--Cchhhhhhhhhccch
Confidence            345677777777777777665533211   12345667778888888888877332   2111  223345566666666


Q ss_pred             HHH----HHHHhCCCCccccCCC--CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHH
Q 020274          247 QSV----KLLIKYNVDVNVADNE--GWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK  320 (328)
Q Consensus       247 ~iv----~~Ll~~ga~in~~d~~--g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~  320 (328)
                      ++.    ++++.+...-...|..  -..-|..|+..|-...+.-.+++|.+++.      ++|..|+++++    ..|+.
T Consensus       118 sLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynh----RkIL~  187 (192)
T PF03158_consen  118 SLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNH----RKILD  187 (192)
T ss_pred             hHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhH----HHHHH
Confidence            542    2333332111011100  01246677777877777777777777754      67778888777    66665


Q ss_pred             HH
Q 020274          321 LL  322 (328)
Q Consensus       321 lL  322 (328)
                      ++
T Consensus       188 yf  189 (192)
T PF03158_consen  188 YF  189 (192)
T ss_pred             Hh
Confidence            44

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.86  E-value=0.63  Score=39.15  Aligned_cols=141  Identities=13%  Similarity=0.072  Sum_probs=96.8

Q ss_pred             cccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHc
Q 020274          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIG  210 (328)
Q Consensus       131 ~~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~  210 (328)
                      ...--+.+||+.+..+.+++.-+.....     -...++..-+||...+.++|+++-+   ++...  +-.+.+-.|...
T Consensus        45 ~~~CLl~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI~q---nL~i~--~~~~iFdIA~~~  114 (192)
T PF03158_consen   45 DMWCLLYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWIGQ---NLHIY--NPEDIFDIAFAK  114 (192)
T ss_pred             CHHHHHHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHHhh---ccCCC--Cchhhhhhhhhc
Confidence            4455677888888877777665543321     2346788899999999999999943   22222  234567788888


Q ss_pred             CCHHHHH----HHHHCCCCCCCCCC--CCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 020274          211 KKEAVIS----HLLRKGANPHVKDG--DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKV  284 (328)
Q Consensus       211 g~~~~v~----~Ll~~g~d~~~~d~--~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~  284 (328)
                      .+.++..    +++++...-...|.  --..-|..|+..|....+.-.+++|.+++.      ++|..|+..++..|+.+
T Consensus       115 kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~y  188 (192)
T PF03158_consen  115 KDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDY  188 (192)
T ss_pred             cchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHH
Confidence            8877632    33343322211111  011347789999999999999999988764      89999999999999999


Q ss_pred             HHH
Q 020274          285 LLI  287 (328)
Q Consensus       285 Ll~  287 (328)
                      ++.
T Consensus       189 fi~  191 (192)
T PF03158_consen  189 FIR  191 (192)
T ss_pred             hhc
Confidence            874

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.22  E-value=0.62  Score=33.36  Aligned_cols=46  Identities=33%  Similarity=0.442  Sum_probs=23.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020274          236 PLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN  288 (328)
Q Consensus       236 pLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  288 (328)
                      .+..|+..|+.++++.+++.+ .++      ...+..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            445555555555555555433 111      2345555555555555555544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=89.02  E-value=0.8  Score=32.80  Aligned_cols=46  Identities=30%  Similarity=0.419  Sum_probs=22.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhC
Q 020274          203 ALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY  255 (328)
Q Consensus       203 ~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~  255 (328)
                      .+..|+.+|+.++++.+++.+ .++      ..+|..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            345555555555555555433 111      2245555555555555555543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=85.40  E-value=0.53  Score=41.49  Aligned_cols=11  Identities=18%  Similarity=0.099  Sum_probs=4.8

Q ss_pred             CCCcccccccc
Q 020274           22 APNSILFGTST   32 (328)
Q Consensus        22 ~~~~~~~~~~~   32 (328)
                      +..++-+-.||
T Consensus       219 t~eTkdLSmSt  229 (314)
T PF06524_consen  219 TQETKDLSMST  229 (314)
T ss_pred             ccccccceeee
Confidence            44444444443

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins

Probab=85.31  E-value=0.41  Score=45.46  Aligned_cols=7  Identities=14%  Similarity=0.060  Sum_probs=2.8

Q ss_pred             cceeeee
Q 020274           52 QLIKVRF   58 (328)
Q Consensus        52 ~~~~~~~   58 (328)
                      -|-++++
T Consensus        30 DtlkKE~   36 (458)
T PF10446_consen   30 DTLKKEN   36 (458)
T ss_pred             HHHHHHH
Confidence            3444433

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues

Probab=80.64  E-value=1.2  Score=39.28  Aligned_cols=8  Identities=25%  Similarity=0.430  Sum_probs=3.0

Q ss_pred             eeeeeecc
Q 020274           33 SKVLVSSR   40 (328)
Q Consensus        33 ~~~~~~~~   40 (328)
                      +.+-.+++
T Consensus       223 kdLSmStR  230 (314)
T PF06524_consen  223 KDLSMSTR  230 (314)
T ss_pred             ccceeeee
Confidence            33333333

The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	328
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-21
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-21
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-20
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-20
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		7e-20
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-19
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		3e-19
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		8e-19
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-18
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-18
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-18
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-18
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-17
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-17
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-17
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-17
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		4e-17
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-17
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		7e-17
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-16
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-16
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-16
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-16
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-16
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-15
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-15
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		2e-15
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-15
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-14
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-14
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-14
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-14
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		7e-14
1uoh_A	226	Human Gankyrin Length = 226		7e-14
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		8e-14
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		8e-14
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-13
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		1e-13
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-13
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-13
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		2e-12
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-12
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-12
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		2e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-12
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		6e-12
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		6e-12
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		6e-12
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		7e-12
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-11
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		3e-11
3so8_A	162	Crystal Structure Of Ankra Length = 162		4e-11
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-11
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		4e-11
1ycs_B	239	P53-53bp2 Complex Length = 239		8e-11
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		8e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		8e-11
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-10
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-10
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		4e-10
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		6e-10
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		1e-09
2xen_A	91	Structural Determinants For Improved Thermal Stabil		3e-09
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		4e-09
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		5e-09
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		8e-09
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		8e-09
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-08
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		1e-08
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-08
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		2e-08
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		2e-08
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-08
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-08
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-08
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		2e-08
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		2e-08
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		5e-08
2f8y_A	223	Crystal Structure Of Human Notch1 Ankyrin Repeats T		6e-08
1yyh_A	253	Crystal Structure Of The Human Notch 1 Ankyrin Doma		1e-07
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-07
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-07
2f8x_K	256	Crystal Structure Of Activated Notch, Csl And Maml		1e-07
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		3e-07
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		3e-07
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		3e-07
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		9e-07
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		9e-07
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		9e-07
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		9e-07
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		1e-06
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		1e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		1e-06
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		3e-06
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		4e-06
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		9e-06
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		1e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		3e-04
1ymp_A	135	The Crystal Structure Of A Partial Mouse Notch-1 An		3e-04
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		4e-04
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		5e-04
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		7e-04

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 74/119 (62%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
           ++ D DG T LH A     + ++  LL KGA+P+ KD DG TPLHYA + G  + VKLL+
Sbjct: 31  NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 90
Query: 254 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
               D N  D++G TPLH A ++ +++I K+LL  GAD +    DG+T LD++  +G +
Sbjct: 91  SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNE 149

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 75/120 (62%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ D DG T LH A     + V+  LL +GA+P+ KD DG TPLH A + G  + VKLL
Sbjct: 30  VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 89
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           +    D N  D++G TPLH+A ++ ++++ K+LL  GAD +    DG+T LD++  +G +
Sbjct: 90  LSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNE 149

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 4/131 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ D DG T LH A     + ++  L+ KGA+ + KD DG TPLHYA + G  + VKLL
Sbjct: 30  VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL 89
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           I    DVN  D++G TPLH A +  +++I K+L+  GAD +    DG+T LD++  +G +
Sbjct: 90  ISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNE 149
Query: 313 FKSYDLAKLLK 323
               ++ KLL+
Sbjct: 150 ----EIVKLLE 156

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 75/120 (62%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ D DG T LH A     + V+  L+ KGA+ + KD DG TPLH+A + G  + VKLL
Sbjct: 30  VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 89
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           I    DVN  D++G TPLH A ++ ++++ K+L+  GAD +    DG+T LD++  +G +
Sbjct: 90  ISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNE 149

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 83/131 (63%), Gaps = 4/131 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ DKDG T LH A       ++  LL+ GA+ + KD DG TPLH A + G ++ V++L
Sbjct: 40  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           +K   DVN  D +G+TPLH+A +  + +I +VLL  GAD + + K GKTA D+S+  G +
Sbjct: 100 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLK 323
               DLA++L+
Sbjct: 160 ----DLAEILQ 166

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 4/131 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ D DG T LH A       ++  LL+ GA+ +  D  G TPLH A   G ++ V++L
Sbjct: 40  VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           +K+  DVN  DN+G TPLH+A +  + +I +VLL +GAD + + K GKTA D+S+  G +
Sbjct: 100 LKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLK 323
               DLA++L+
Sbjct: 160 ----DLAEILQ 166

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 80/131 (61%), Gaps = 4/131 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ D +GLT LH A    +  ++  LL+ GA+ +  D  G TPLH A   G ++ V++L
Sbjct: 32  VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVL 91
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           +K+  DVN  D  GWTPLH+A  S   +I +VLL +GAD + +   G TA D+S+  G++
Sbjct: 92  LKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQE 151
Query: 313 FKSYDLAKLLK 323
               DLA++L+
Sbjct: 152 ----DLAEILQ 158

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 82/131 (62%), Gaps = 4/131 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ DKDG T LH A       ++  LL+ GA+ + KD DG TPLH A + G ++ V++L
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           +K   DVN  D +G+TPLH+A +  + +I +VLL  GAD + + K GKT  D+++  G +
Sbjct: 88  LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHE 147
Query: 313 FKSYDLAKLLK 323
               D+A++L+
Sbjct: 148 ----DIAEVLQ 154

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 82/131 (62%), Gaps = 4/131 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ DKDG T LH A       ++  LL+ GA+ + KD DG TPLH A + G ++ V++L
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           +K   DVN  D +G+TPLH+A +  + +I +VLL  GAD + + K GKT  D+++  G +
Sbjct: 88  LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNE 147
Query: 313 FKSYDLAKLLK 323
               D+A++L+
Sbjct: 148 ----DIAEVLQ 154

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 4/128 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++VD  GLT LH A +     ++  LL+ GA+    D  G TPLH A   G ++ V++L
Sbjct: 40  VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           +KY  DVN  D  G TPLH+A    + +I +VLL  GAD + + K GKTA D+S+  G +
Sbjct: 100 LKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAK 320
               DLAK
Sbjct: 160 ----DLAK 163

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 83/133 (62%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ D  G T LH A       ++  LL+ GA+ + KD  G TPLH A + G ++ V++L
Sbjct: 40  VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           +K   DVN +D+ G+TPLH+A +  + +I +VLL NGAD + + K GKTA D+S+  G +
Sbjct: 100 LKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLKIL 325
               DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 83/134 (61%), Gaps = 6/134 (4%)
Query: 193 IDSVDKDGLTALH-KAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKL 251
           +++ D  G T LH  A IG  E ++  LL+ GA+ + +D DG TPLH A   G ++ V++
Sbjct: 40  VNAHDDQGSTPLHLAAWIGHPE-IVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEV 98
Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
           L+KY  DVN  D  G TPLH+A    + +I +VLL +GAD + + K GKTA D+S+  G 
Sbjct: 99  LLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGN 158
Query: 312 DFKSYDLAKLLKIL 325
           +    DLA++L+ L
Sbjct: 159 E----DLAEILQKL 168

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 76/126 (60%), Gaps = 4/126 (3%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
           G+T LH  +      +I  LL+  A+ +  D  G TPLH A   G ++ V++L+KY  DV
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLA 319
           N  D +G+TPLH+A +  + +I +VLL  GAD + + K GKTA D+S+  G +    DLA
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE----DLA 162
Query: 320 KLLKIL 325
           ++L+ L
Sbjct: 163 EILQKL 168

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ D  GLT LH A       ++  LL+ GA+ +  D  G+TPLH A  +G ++ V++L
Sbjct: 40  VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           +K+  DVN  D  G TPLH+A    + +I +VLL +GAD + + K GKTA D+S+  G +
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLKIL 325
               DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 4/107 (3%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
           L+  GA+ +  D DG TPLH A Q+G ++ V++L+KY  DVN  DN G TPLH+A    +
Sbjct: 33  LMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
            +I +VLL +GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 93  LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ D  GLT LH A       ++  LL+ GA+ +  D  G+TPLH A  +G ++ V++L
Sbjct: 40  VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           +K+  DVN  D  G TPLH+A    + +I +VLL +GAD + + K GKTA D+S+  G +
Sbjct: 100 LKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLKIL 325
               DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 78/130 (60%), Gaps = 4/130 (3%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
           ++ D  G T LH A       ++  LLR GA+ +  D +G TPLH A  +G ++ V++L+
Sbjct: 29  NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLL 88
Query: 254 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDF 313
           KY  DVN  D  G TPL++A    + +I +VLL +GAD + + K GKTA D+S+    D 
Sbjct: 89  KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISI----DI 144
Query: 314 KSYDLAKLLK 323
            + DLA++L+
Sbjct: 145 GNEDLAEILQ 154

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/133 (39%), Positives = 80/133 (60%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ D  G T LH A       ++  LL+ GA+ +  D  GATPLH A   G ++ V++L
Sbjct: 40  VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           +K+  DVN  D EG+TPLH+A    + +I +VLL  GAD + + K GKTA D+S+  G +
Sbjct: 100 LKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLKIL 325
               DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ D  G T LH A I     ++  LL+ GA+ +  D  G TPLH A   G ++ V++L
Sbjct: 40  VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           +K   DVN  D  G+TPLH+A  + + +I +VLL  GAD + + K GKTA D+S+  G +
Sbjct: 100 LKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLKIL 325
               DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 77/133 (57%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ D  G T LH A       ++  LL+ GA+ +  D  G TPL  A   G ++ V++L
Sbjct: 40  VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           +K   DVN  D EG TPLH+A    + +I +VLL NGAD + + K GKTA D+S+  G +
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLKIL 325
               DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 79/133 (59%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ D  G T LH A       ++  LL+ GA+ +  D  G TPLH A   G ++ V++L
Sbjct: 40  VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           +K   DVN  D+ G+TPLH+A    + +I +VLL +GAD + + K GKTA D+S+  G +
Sbjct: 100 LKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLKIL 325
               DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 82/132 (62%), Gaps = 6/132 (4%)
Query: 193 IDSVDKDGLTALHKAI-IGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKL 251
           +++ D  G T LH A  +G  E ++  LL+ GA+ +  D  G+TPLH A + G ++ V++
Sbjct: 40  VNAEDTYGDTPLHLAARVGHLE-IVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEV 98
Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
           L+KY  DVN  D  G TPLH+A  + + +I +VLL  GAD + + K GKTA D+S+  G 
Sbjct: 99  LLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Query: 312 DFKSYDLAKLLK 323
           +    DLA++L+
Sbjct: 159 E----DLAEILQ 166

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ D  G T LH A       ++  LL+ GA+ +  D  G+TPLH A   G ++ V++L
Sbjct: 40  VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           +K   DVN  D+ G TPLH+A    + +I +VLL  GAD + + K GKTA D+S+  G +
Sbjct: 100 LKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNE 159
Query: 313 FKSYDLAKLLKIL 325
               DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 4/133 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++ D  G T LH A       ++  LL+ GA+    D  G TPLH A   G ++ V++L
Sbjct: 40  VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVL 99
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           +K   DVN  D++G TPLH+A +    +I +VLL +GAD + + K GKTA D+S+  G +
Sbjct: 100 LKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 313 FKSYDLAKLLKIL 325
               DLA++L+ L
Sbjct: 160 ----DLAEILQKL 168

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 62/104 (59%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
           T LH A    + +V+ +LL+ GA+ H KD  G  PLH A   G  +  +LL+K+   VNV
Sbjct: 44  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
           AD   +TPLH A      +I K+LL +GAD ++K +DG T LD+
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 62/104 (59%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
           T LH A    + +V+ +LL+ GA+ H KD  G  PLH A   G  +  +LL+K+   VNV
Sbjct: 46  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
           AD   +TPLH A      +I K+LL +GAD ++K +DG T LD+
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 149

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 62/104 (59%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
           T LH A    + +V+ +LL+ GA+ H KD  G  PLH A   G  +  +LL+K+   VNV
Sbjct: 48  TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
           AD   +TPLH A      +I K+LL +GAD ++K +DG T LD+
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 151

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 67/112 (59%)
Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
           +G T LH A       V+  LL  GA+ + KD +G TPLH A + G ++ VKLL++   D
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
           VN  D  G TPLH+A ++ + ++ K+LL  GAD + K K+G+T L ++   G
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 4/107 (3%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
           L+  GA+ +  D  G TPLH A     ++ V++L+K+  DVN  DN+G TPLH+A    +
Sbjct: 33  LMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
            +I +VLL +GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 93  LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
           L+  GA+ +  D  G TPLH A + G ++ V++L+K+  DVN +D+ G TPLH+A    +
Sbjct: 33  LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
            +I +VLL  GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 93  LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 67/141 (47%)
Query: 166 AKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGAN 225
           A W PL     + +             +++V+++G T LH A    +  +   LL  GAN
Sbjct: 72  AGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 226 PHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
           P  KD   AT +H A   G ++ V +L+ Y    N+ D EG TPLH+A      + AK L
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Query: 286 LINGADKSRKTKDGKTALDMS 306
           +  GA    + K+ KT L ++
Sbjct: 192 VTQGASIYIENKEEKTPLQVA 212

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
           L+  GA+ + KD  G TPL+ A   G ++ V++L+K   DVN  D  G+TPLH+A    +
Sbjct: 33  LMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
            +IA+VLL +GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 93  LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE----DLAEILQKL 135

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 68/141 (48%)
Query: 166 AKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGAN 225
           A W PL     + +             +++V+++G T LH A    +  +   LL  GAN
Sbjct: 73  AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 132
Query: 226 PHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
           P  KD   AT +H A   G ++ + +L+ Y    N+ D EG TPLH+A      + AK+L
Sbjct: 133 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 192
Query: 286 LINGADKSRKTKDGKTALDMS 306
           +  GA    + K+ KT L ++
Sbjct: 193 VSQGASIYIENKEEKTPLQVA 213

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 68/141 (48%)
Query: 166 AKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGAN 225
           A W PL     + +             +++V+++G T LH A    +  +   LL  GAN
Sbjct: 72  AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 226 PHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
           P  KD   AT +H A   G ++ + +L+ Y    N+ D EG TPLH+A      + AK+L
Sbjct: 132 PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLL 191
Query: 286 LINGADKSRKTKDGKTALDMS 306
           +  GA    + K+ KT L ++
Sbjct: 192 VSQGASIYIENKEEKTPLQVA 212

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 66/141 (46%)
Query: 166 AKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGAN 225
           A W PL     +               +++V+++G T LH A    +  +   LL  GAN
Sbjct: 72  AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN 131
Query: 226 PHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
           P  KD   AT +H A   G ++ V +L+ Y    N+ D EG TPLH+A      + AK L
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191
Query: 286 LINGADKSRKTKDGKTALDMS 306
           +  GA    + K+ KT L ++
Sbjct: 192 VTQGASIYIENKEEKTPLQVA 212

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 74.3 bits (181), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
           D++++ G TAL   + G   A+   LL++GA+P+V+D  G +P+H A + G + ++K+L+
Sbjct: 36  DALNRFGKTALQVMMFGST-AIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV 94
Query: 254 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDF 313
           ++  DVNV D  G  P+H+A+Q  +  +   L    +D  R+   G T L+++L  G   
Sbjct: 95  EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRG--- 150
Query: 314 KSYDLAKLLK 323
            + DL  +L+
Sbjct: 151 -AQDLVDILQ 159

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 67/107 (62%), Gaps = 4/107 (3%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
           L+  GA+ +  D  G TPLH A + G ++ V++L+K+  DVN +D  G TPLH+A    +
Sbjct: 33  LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
            +I +VLL  GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 93  LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 76/130 (58%), Gaps = 6/130 (4%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
           D++++ G TAL   + G   A+   LL++GA+P+V+D  G +P+H A + G + ++K+L+
Sbjct: 30  DALNRFGKTALQVMMFGST-AIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV 88
Query: 254 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDF 313
           ++  DVNV D  G  P+H+A+Q  +  +   L    +D  R+   G T L+++L  G   
Sbjct: 89  EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRG--- 144
Query: 314 KSYDLAKLLK 323
            + DL  +L+
Sbjct: 145 -AQDLVDILQ 153

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
           L   GA+ +  D  G TPLH A  +G ++ V++L+K   DVN   N G TPLH+A  + +
Sbjct: 33  LTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
            +I +VLL +GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 93  LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 66/107 (61%), Gaps = 4/107 (3%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
           L+  GA+ +  D  G TPLH A + G ++ V++L+K+  DVN  D  G TPLH+A    +
Sbjct: 33  LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
            +I +VLL  GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 93  LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
           G TAL    +G  E +   LL +GANP +KD  G   +H A + G + +++ L+++  DV
Sbjct: 38  GRTALQVMKLGNPE-IARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADV 96
Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADK-SRKTKDGKTALDMSLCYGRD 312
           N+ DNEG  PLH+A +  +  + + L+ + A     +   G TA D++  YGR+
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
           G TAL    +G  E +   LL +GANP +KD  G   +H A + G + +++ L+++  DV
Sbjct: 38  GRTALQVMKLGNPE-IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADK-SRKTKDGKTALDMSLCYGRD 312
           N+ DNEG  PLH+A +  +  + + L+ + A     +   G TA D++  YGR+
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
           G TAL    +G  E +   LL +GANP +KD  G   +H A + G + +++ L+++  DV
Sbjct: 38  GRTALQVMKLGNPE-IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADK-SRKTKDGKTALDMSLCYGRD 312
           N+ DNEG  PLH+A +  +  + + L+ + A     +   G TA D++  YGR+
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
           G TAL    +G  E +   LL +GANP +KD  G   +H A + G + +++ L+++  DV
Sbjct: 38  GRTALQVMKLGNPE-IARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADV 96
Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADK-SRKTKDGKTALDMSLCYGRD 312
           N+ DNEG  PLH+A +  +  + + L+ + A     +   G TA D++  YGR+
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/92 (41%), Positives = 55/92 (59%)
Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
           +G T LH A       V+  LL  GA+ + KD +G TPLH A + G ++ VKLL++   D
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
           VN  D  G TPLH+A ++ + ++ K+LL  GA
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
           D++++ G TAL   + G   AV   LL++GA+P+V+D  G +P+H A + G + ++K+L+
Sbjct: 38  DALNRFGKTALQVMMFGSP-AVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV 96
Query: 254 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
           ++  DVN  D+ G  P+H+AI+  +  +   L    +D   +   G T L+++
Sbjct: 97  EHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELA 148

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 19/144 (13%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
           T LH A    +  ++  LL+ GA+ H KD  G  PLH A   G  +  +LL+K+   VN 
Sbjct: 60  TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119
Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS--------LCYGRDF 313
            D   +TPLH A      ++  +LL +GAD +     GK+A+DM+        L Y  +F
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTY--EF 177
Query: 314 KSY---------DLAKLLKILPVE 328
           K +         DLAK+ K L +E
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALE 201

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
           D++++ G TAL   + G   AV   LL++GA+P+V+D  G +P+H A + G + ++K+L+
Sbjct: 36  DALNRFGKTALQVMMFGSP-AVALELLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLV 94
Query: 254 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
           ++  DVN  D+ G  P+H+AI+  +  +   L    +D   +   G T L+++
Sbjct: 95  EHGADVNALDSTGSLPIHLAIREGHSSVVSFLAPE-SDLHHRDASGLTPLELA 146

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
           L+  GA+ + +D  G TPLH A     ++ V++L+K   DVN  D  G TPLH+     +
Sbjct: 33  LMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGH 92
Query: 279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
            +I +VLL +GAD + + K GKTA D+S+  G +    DLA++L+ L
Sbjct: 93  LEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE----DLAEILQKL 135

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
           G TAL    +G  E +   LL +GANP +KD  G   +H A + G + +++ L++   DV
Sbjct: 38  GRTALQVMKLGNPE-IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADV 96
Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADK-SRKTKDGKTALDMSLCYGRD 312
           N+ DNEG  PLH+A +  +  + + L+ + A     +   G TA D++  YGR+
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN 150

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           I+  D++G T L  A    + AV+  LL+ GA+P +      + L  A   G    VK+L
Sbjct: 45  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG-R 311
           +   VDVN  D  G TPL  A+   +    K+LL +GAD + +T  G  ++D+++  G R
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 164
Query: 312 DFKSYDLAKLLKIL 325
             +    + LLK+L
Sbjct: 165 SVQQVIESHLLKLL 178

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           I+  D++G T L  A    + AV+  LL+ GA+P +      + L  A   G    VK+L
Sbjct: 27  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG-R 311
           +   VDVN  D  G TPL  A+   +    K+LL +GAD + +T  G  ++D+++  G R
Sbjct: 87  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 146
Query: 312 DFKSYDLAKLLKIL 325
             +    + LLK+L
Sbjct: 147 SVQQVIESHLLKLL 160

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 56/111 (50%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           ++   +DG + LH A +  +  +I  LL+ GAN   ++ D A PLH A Q G  Q VK L
Sbjct: 79  VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
           +  N   N  D  G TPL  A    + ++  +LL +GA  +     G TAL
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL 189

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           I+  D++G T L  A    + AV+  LL+ GA+P +      + L  A   G    VK+L
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG-R 311
           +   VDVN  D  G TPL  A+   +    K+LL +GAD + +T  G  ++D+++  G R
Sbjct: 89  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR 148
Query: 312 DFKSYDLAKLLKIL 325
             +    + LLK+L
Sbjct: 149 SVQQVIESHLLKLL 162

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 215 VISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI 274
           ++  ++ +  +P + + +G T LH AV  G  + VK L+++ V+VN AD++GWTPLH A 
Sbjct: 52  LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
Query: 275 QSRNRDIAKVLLINGADKSRKT-KDGKTALD 304
              N  + K L+ +GA     T  D +TA D
Sbjct: 112 SCNNVQVCKFLVESGAAVFAMTYSDMQTAAD 142

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 215 VISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI 274
           ++  ++ +  +P + + +G T LH AV  G  + VK L+++ V+VN AD++GWTPLH A 
Sbjct: 52  LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
Query: 275 QSRNRDIAKVLLINGADKSRKT-KDGKTALD 304
              N  + K L+ +GA     T  D +TA D
Sbjct: 112 SCNNVQVCKFLVESGAAVFAMTYSDMQTAAD 142

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 52/94 (55%)
Query: 198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNV 257
           KDG T LH A        +  LL KGA+ + +  DG TPLH A + G  + VKLL+    
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 258 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 291
           DVN    +G TP H+A ++ + +I K+L   GAD
Sbjct: 67  DVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 232 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 291
           DG TPLH A + G  + VK L+    DVN    +G TPLH+A ++ + +I K+LL  GAD
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 292 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
            + ++KDG T   ++   G     +++ KLL
Sbjct: 68  VNARSKDGNTPEHLAKKNGH----HEIVKLL 94

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 6/169 (3%)
Query: 154 QNATPNLGKISTAKWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKE 213
           + A+PN+  +      PL     +               +++  KD  T LH A      
Sbjct: 36  RGASPNVSNVKV--ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT 93
Query: 214 AVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIA 273
            ++  LL   ANP++    G TPLH A + G +++V  L++          +G+TPLH+A
Sbjct: 94  NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA 153
Query: 274 IQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
            +     +A++LL   A  +   K+G T L +++ +     + D+ KLL
Sbjct: 154 AKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH----NNLDIVKLL 198

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
           DG   L     G  E V+  LL +GA+ +  + DG T LH A     +  VK L++   +
Sbjct: 40  DGAVFLAACSSGDTEEVL-RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98
Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
           +N  DNEGW PLH A      DIA+ L+  GA       +G T LD+
Sbjct: 99  INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 56/94 (59%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
           G T LH A I      + +LL+ G++P+VKD  G TPLH A   G ++ V+LL+++   V
Sbjct: 10  GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV 69
Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS 293
           N    +  +PLH A ++ + DI K+LL  GA ++
Sbjct: 70  NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 61/115 (53%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
           D +G TAL  A+   +  +   LL KG+N + KD  G TPL +++  G  +    L+++ 
Sbjct: 65  DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG 124
Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
            +VN  + EG TPL +A +    +I K LL  GAD S +   G TA   +  +GR
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
           A + G    V++L+    DVN  D +G+TPLH+A +  + +I +VLL  GAD + + K G
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 300 KTALDMSLCYGRDFKSYDLAKLLK 323
           KTA D+S+  G +    DLA++L+
Sbjct: 69  KTAFDISIDNGNE----DLAEILQ 88

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 196 VDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAV-QVGAMQSVKLLIK 254
           +D +G + +H A      +++++L+ KG +  + D +G TPL +A  +  ++   +LL+ 
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT 164
Query: 255 YNVDVNVADN-EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
           +NV VN+ D     T LH A+ + N  +  +LL  GA+   +   G++ALD++
Sbjct: 165 FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 167 KWRPLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANP 226
           K  PL     +  +            ID+  +D  T L +A        + +L++ GA  
Sbjct: 11  KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV 70
Query: 227 HVKDGDGATPLHYAVQVGAMQSVK-LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
             KD +G+T LH A + G  + V+ LL    +DVN  D+ GWTP+  A + ++ D+ K+L
Sbjct: 71  DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130
Query: 286 LINGAD 291
           L  G+D
Sbjct: 131 LSKGSD 136

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
           + LH A       +   L++ GAN      D  TPL  A +   +++VK LIK    V+ 
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKL 321
            D EG T LH+A +  + ++ + LL NG        DG       + +  ++K  DL KL
Sbjct: 73  KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWT---PMIWATEYKHVDLVKL 129
Query: 322 L 322
           L
Sbjct: 130 L 130

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 55/112 (49%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           ++  D  G + LH A    + AV+  L+ +GA  +V +    TPLH A   G    V+ L
Sbjct: 32  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
           ++Y  D+N  +  G  PLH A       +A+ L+ NGA  S   K G+  +D
Sbjct: 92  LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVD 143

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV 259
           G + LH A      +    LLR G +   +     TPLH A   G    V++L+K+  DV
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLA 319
           N  D    T LH A +  ++++ ++L+  GAD   ++K  KTA D+S+  G +    DLA
Sbjct: 94  NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNE----DLA 149
Query: 320 KLLK 323
           ++L+
Sbjct: 150 EILQ 153

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 53/108 (49%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
           D  G + LH A    + AV+  L+ +GA  +V +    TPLH A   G    V+ L++Y 
Sbjct: 31  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYK 90
Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
            D+N  +  G  PLH A       +A+ L+ NGA  S   K G+  +D
Sbjct: 91  ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVD 138

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 59/118 (50%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           ++  D+ G T L  A    +   +  LL  GA+PH+   +  + L  A   G    V LL
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
           ++ +VD+N+ D  G TPL  A++  +    + LL  GAD + +   G T +D+++  G
Sbjct: 89  LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
           L+  GA+   KD +G+TPLH A + G ++ VKLL++   DVN  D  G T   I+I + N
Sbjct: 25  LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGN 84
Query: 279 RDIAKVL 285
            D+A++L
Sbjct: 85  EDLAEIL 91

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD--- 258
           T LH A+I  +  +   LL  G +P ++D  G TPLH A + G + SV +L +       
Sbjct: 47  TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 259 ---VNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD-KSRKTKDGKTALDMSLCYGRDFK 314
              +   +  G T LH+A       I ++L+  GAD  +++  +G+TAL +++    D +
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV----DLQ 162
Query: 315 SYDLAKLL 322
           + DL  LL
Sbjct: 163 NPDLVSLL 170

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 58/118 (49%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           ++  D+ G T L  A    +   +  LL  GA+PH+   +  + L  A   G    V LL
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL 88
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
           ++ +VD+N+ D  G TPL  A+   +    + LL  GAD + +   G T +D+++  G
Sbjct: 89  LERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           ++ +   G+T LH A+  K   V   L+  GA+  +KD     PLH A  VG+++ ++LL
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Query: 253 IKYNVD-VNVADNEGWTPLHIAIQSRNRDIAKVLLIN--GADKSRKTKDGKTALDMSL 307
                  VN  D +GWTPL  A+   + D A VLL+   GA+       G  A D++L
Sbjct: 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGD-AAVLLVEKYGAEYDLVDNKGAKAEDVAL 216

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           ++ +   G+T LH A+  K   V   L+  GA+  +KD     PLH A  VG+++ ++LL
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Query: 253 IKYNVD-VNVADNEGWTPLHIAIQSRNRDIAKVLLIN--GADKSRKTKDGKTALDMSL 307
                  VN  D +GWTPL  A+   + D A VLL+   GA+       G  A D++L
Sbjct: 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGD-AAVLLVEKYGAEYDLVDNKGAKAEDVAL 216

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           ++ +   G+T LH A+  K   V   L+  GA+  +KD     PLH A  VG+++ ++LL
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Query: 253 IKYNVD-VNVADNEGWTPLHIAIQSRNRDIAKVLLIN--GADKSRKTKDGKTALDMSL 307
                  VN  D +GWTPL  A+   + D A VLL+   GA+       G  A D++L
Sbjct: 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGD-AAVLLVEKYGAEYDLVDNKGAKAEDVAL 216

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD--- 258
           T LH A+I  +  +   LL  G +P ++D  G TPLH A + G + SV +L +       
Sbjct: 44  TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 259 ---VNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD-KSRKTKDGKTALDMSLCYGRDFK 314
              +   +  G T LH+A       I ++L+  GAD  +++  +G+TAL +++    D +
Sbjct: 104 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV----DLQ 159
Query: 315 SYDLAKLL 322
           + DL  LL
Sbjct: 160 NPDLVSLL 167

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 5/130 (3%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLR-KGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +S D  G T LH A+      V   LLR +  N + +  DG TPL  A ++     V+ L
Sbjct: 78  NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 137
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           I  + D+N ADN G T LH A    N +   +LL++ A++  +    +T L ++   G  
Sbjct: 138 ITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREG-- 195
Query: 313 FKSYDLAKLL 322
             SY+ +K L
Sbjct: 196 --SYEASKAL 203

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLR-KGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
           D  G T LH A+    + V   L+R +  +   +  DG TPL  A ++     ++ LI  
Sbjct: 87  DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146
Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS 315
           + DVN  D+ G + LH A    N D A VLL NGA+K  +    +T L ++   G    S
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG----S 202
Query: 316 YDLAKLL 322
           Y+ AK+L
Sbjct: 203 YETAKVL 209

>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a Resolution. Length = 223

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLR-KGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
           D  G T LH A+    + V   L+R +  +   +  DG TPL  A ++     ++ LI  
Sbjct: 55  DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 114
Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS 315
           + DVN  D+ G + LH A    N D A VLL NGA+K  +    +T L ++   G    S
Sbjct: 115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG----S 170
Query: 316 YDLAKLL 322
           Y+ AK+L
Sbjct: 171 YETAKVL 177

>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain Length = 253

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLR-KGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
           D  G T LH A+    + V   L+R +  +   +  DG TPL  A ++     ++ LI  
Sbjct: 87  DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146
Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS 315
           + DVN  D+ G + LH A    N D A VLL NGA+K  +    +T L ++   G    S
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG----S 202
Query: 316 YDLAKLL 322
           Y+ AK+L
Sbjct: 203 YETAKVL 209

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
           L+  GA+   KD +G+TPLH A + G ++ VKLL++   DV   D  G T   I+I + N
Sbjct: 43  LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGN 102
Query: 279 RDIAKVL 285
            D+A++L
Sbjct: 103 EDLAEIL 109

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 233 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 292
           G  PLHYA   G ++ ++ L+    D+N  D    TPL  A+   +    K+LL  GADK
Sbjct: 35  GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 94
Query: 293 SRKTKDGKTALDMS 306
           + K  DG TAL+ +
Sbjct: 95  TVKGPDGLTALEAT 108

>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter Dna Sequence Length = 256

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLR-KGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
           D  G T LH A+    + V   L+R +  +   +  DG TPL  A ++     ++ LI  
Sbjct: 88  DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 147
Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS 315
           + DVN  D+ G + LH A    N D A VLL NGA+K  +    +T L ++   G    S
Sbjct: 148 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG----S 203
Query: 316 YDLAKLL 322
           Y+ AK+L
Sbjct: 204 YETAKVL 210

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 233 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 292
           G  PLHYA   G ++ ++ L+    D+N  D    TPL  A+   +    K+LL  GADK
Sbjct: 40  GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADK 99
Query: 293 SRKTKDGKTALDMS 306
           + K  DG TA + +
Sbjct: 100 TVKGPDGLTAFEAT 113

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVK----------DGDGATPLHYAVQ 242
           ++  D  G TA  +A +  K   +  L ++GAN +++             GAT L  A +
Sbjct: 118 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 177
Query: 243 VGAMQSVKLLI-KYNVDVNVADNEGWTPL-HIAIQSRNRD---IAKVLLINGADKSRKTK 297
            G ++ +K+L+ +   DVN  DN G   L H  + S + D   I  +LL +GAD + + +
Sbjct: 178 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 237
Query: 298 DGKTALDMSL 307
            GKT L +++
Sbjct: 238 RGKTPLILAV 247

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 15/130 (11%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVK----------DGDGATPLHYAVQ 242
           ++  D  G TA  +A +  K   +  L ++GAN +++             GAT L  A +
Sbjct: 98  VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Query: 243 VGAMQSVKLLI-KYNVDVNVADNEGWTPL-HIAIQSRNRD---IAKVLLINGADKSRKTK 297
            G ++ +K+L+ +   DVN  DN G   L H  + S + D   I  +LL +GAD + + +
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217
Query: 298 DGKTALDMSL 307
            GKT L +++
Sbjct: 218 RGKTPLILAV 227

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNV 257
           +D  T L +A           LL+ GAN +  D  G  PLH+A  +G      L +K   
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 258 DVNVADNEGWTPLHIAIQSRNRDIAKVL 285
           D+   D+EG  PL IA+++ N DI  +L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNV 257
           +D  T L +A           LL+ GAN +  D  G  PLH+A  +G      L +K   
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 258 DVNVADNEGWTPLHIAIQSRNRDIAKVLLI---NGADKSRKTKDGKTALDMSLCYGRDF 313
           D+   D+EG  PL IA+++ N DI  +L +     A+ ++     +T LD+     RDF
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIF----RDF 347

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 204 LHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD 263
           L  A+ G+ E V+   +++  +P   + +G T LH A+       V  LI    +VN  D
Sbjct: 26  LDAALTGELE-VVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84
Query: 264 NEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT-KDGKTALD 304
           + GWTPLH A    +  I   L+ +GA     T  DG TA +
Sbjct: 85  SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFE 126

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNV 257
           +D  T L +A           LL+ GAN +  D  G  PLH+A  +G      L +K   
Sbjct: 233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGA 292
Query: 258 DVNVADNEGWTPLHIAIQSRNRDIAKVL 285
           D+   D+EG  PL IA+++ N DI  +L
Sbjct: 293 DLGARDSEGRDPLTIAMETANADIVTLL 320

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 197 DKDGLTALHKAIIGKKEAVISHLLR-KGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
           D  G T LH A+    + V   LLR +  +   +  DG TPL  A ++     ++ LI  
Sbjct: 52  DNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINS 111
Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS 315
           + DVN  D+ G + LH A    N D A VLL NGA+K  +    +T L ++   G    S
Sbjct: 112 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREG----S 167
Query: 316 YDLAKLL 322
           Y+ AK+L
Sbjct: 168 YETAKVL 174

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 199 DGLTALHKAIIGKKEAVISHLLRKGAN-------------PHVKDGDGATPLHYAVQVGA 245
           +G TALH A+I +   ++  LL +GA+             PH     G  PL +A  VG+
Sbjct: 74  EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 282
            + V+LLI++  D+   D+ G T LHI I   N+  A
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFA 170

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKD-GDGATPLHYAVQVGAMQSVKL 251
           +++ + DGLTALH A+  + +  +  LL +GA+    D   G +PL +AV+  ++  V+L
Sbjct: 109 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
           L+++  +VN     G + LH A       + + L+ +GAD S K     T L
Sbjct: 169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPL 220

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 232 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-GWTPLHIAIQSRNRDIAKVLLINGA 290
           DG TPLH AV     + V+LL     D+N  +   G TPLH+A++++   + ++LL  GA
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 291 DKSRKTKDGKTALDMSL 307
           D + +   G+T L  +L
Sbjct: 217 DPTARMYGGRTPLGSAL 233

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 170 PLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVK 229
           PL    L   +            ++ V  D  T L  A +      ++ LL+ GA+    
Sbjct: 39  PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-P 97
Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 289
           + D A+P+H A + G ++ V  LI Y  +++   +   TPL++A +++ R   K LL +G
Sbjct: 98  ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 157
Query: 290 ADKSR-KTKD------GKTALDMSLCYGRDFKSYDLAK 320
           AD ++ K +D       +TA +   C   DF +   AK
Sbjct: 158 ADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQAK 195

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 170 PLQTLTLSMQIRYXXXXXXXXXXIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVK 229
           PL    L   +            ++ V  D  T L  A +      ++ LL+ GA+    
Sbjct: 95  PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-P 153
Query: 230 DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 289
           + D A+P+H A + G ++ V  LI Y  +++   +   TPL++A +++ R   K LL +G
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213
Query: 290 ADKSR-KTKDG------KTALDMSLCYGRDFKSYDLAK 320
           AD ++ K +D       +TA +   C   DF +   AK
Sbjct: 214 ADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQAK 251

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGD-GATPLHYAVQVGAMQSVKL 251
           +++ + DG T LH A+I K   ++  L   GA+ +  +   G TPLH AV+  A   ++L
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKD 298
           L+K   D       G TPL  A+   N  +A++L  +GA +     D
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD 257

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY-NVD 258
           G TAL  A+   +  V+  LL   A+ +V+D DG+T L  A + G  +   LL+   + D
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD 242
Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVL 285
           +++ D +G T L +A+ +   +IA +L
Sbjct: 243 ISLTDRDGSTALMVALDAGQSEIASML 269

>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold Length = 135

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +++VD  G +ALH A           LL+ GAN  +++    TPL  A + G+ ++ K+L
Sbjct: 41  VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVL 100
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
           + +  + ++ D+    P  IA +  + DI ++L
Sbjct: 101 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 133

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 202 TALHKAIIGKKEA---VISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
           TALH A+         ++  L++   N   + G G+T LHY       + +KLL++    
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVL 285
           + +A+  G TPL IA + ++    ++L
Sbjct: 231 IEIANESGETPLDIAKRLKHEHCEELL 257

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLL-RKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           DS    G TALH A       ++ +L+  KG+N   +D DG TP+  A Q G ++ V  L
Sbjct: 273 DSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332
Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
           I+    V   D    T   +A  + + +I  + 
Sbjct: 333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 62/111 (55%), Gaps = 10/111 (9%)
Query: 204 LHKAIIGKKEAVISHLLRKGANPHVKDGD--GATPLHYAVQVGAMQSVKLLIKYN-VDVN 260
           L+    G+ E +++++L K A P +   +  G   L  A + G + +VKLL++    D++
Sbjct: 77  LYAGAQGRTE-ILAYML-KHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID 134
Query: 261 VADNEGWTPLHIAIQSRN-----RDIAKVLLINGADKSRKTKDGKTALDMS 306
             ++ G+T L  A+  R      +DI K+L+ NGAD+S K   G+TA+D +
Sbjct: 135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	328
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-44
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-30
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-30
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-42
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-37
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-32
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-41
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-40
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-27
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-41
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-34
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-32
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-10
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-41
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-35
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-26
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-17
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-40
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-32
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-31
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-40
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-32
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-40
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-33
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-27
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-40
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-37
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-37
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-33
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-26
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-40
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-34
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-30
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-26
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-39
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-38
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-29
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-24
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-39
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-34
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-31
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	9e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-39
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-39
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-33
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-32
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-39
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-35
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-28
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-28
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-38
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-37
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-31
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-25
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-38
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-31
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-38
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-37
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-35
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-30
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-38
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-37
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-37
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-31
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-28
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-38
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-36
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-36
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-31
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-37
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-32
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-30
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-37
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-33
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-37
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-33
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-28
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-35
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-31
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-36
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-24
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-34
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-34
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-22
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-36
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-26
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-25
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-33
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-33
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-27
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-23
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-11
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-35
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-34
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-35
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-26
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-35
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-30
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-10
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-34
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-34
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-33
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-34
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-33
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-32
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-27
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-24
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-34
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-32
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-33
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-29
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-33
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-26
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-13
2rfa_A	232	Transient receptor potential cation channel subfa	3e-33
2rfa_A	232	Transient receptor potential cation channel subfa	3e-30
2rfa_A	232	Transient receptor potential cation channel subfa	3e-29
2rfa_A	232	Transient receptor potential cation channel subfa	2e-28
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-31
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-26
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-19
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-32
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-30
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-32
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-32
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-28
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-19
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-32
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-30
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-27
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-30
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-29
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-26
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-28
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	9e-24
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-26
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-22
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-24
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-18
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-18
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-06
2pnn_A	273	Transient receptor potential cation channel subfa	4e-24
2pnn_A	273	Transient receptor potential cation channel subfa	2e-20
2pnn_A	273	Transient receptor potential cation channel subfa	7e-19
2pnn_A	273	Transient receptor potential cation channel subfa	2e-12
2etb_A	256	Transient receptor potential cation channel subfam	3e-23
2etb_A	256	Transient receptor potential cation channel subfam	8e-20
2etb_A	256	Transient receptor potential cation channel subfam	4e-16
2etb_A	256	Transient receptor potential cation channel subfam	9e-12
2etb_A	256	Transient receptor potential cation channel subfam	1e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-23
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-12
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-18
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-18
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-17
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-16
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-13
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-16
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-15
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  146 bits (372), Expect = 9e-44
 Identities = 42/137 (30%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           L    +  D++++ G TAL   + G    +   LL++GA+P+V+D  G +P+H A + G 
Sbjct: 22  LHRELVHPDALNRFGKTALQVMMFGSTA-IALELLKQGASPNVQDTSGTSPVHDAARTGF 80

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
           + ++K+L+++  DVNV D  G  P+H+A+Q  +  +    L   +D  R+   G T L++
Sbjct: 81  LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS-FLAAESDLHRRDARGLTPLEL 139

Query: 306 SLCYGRDFKSYDLAKLL 322
           +L  G    + DL  +L
Sbjct: 140 ALQRG----AQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  112 bits (282), Expect = 1e-30
 Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 1/102 (0%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
            LL  G   +  D  G + +H A        +  L+  GA+ +V DG GA P+H AVQ G
Sbjct: 53  ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG 112

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
               V  L     D++  D  G TPL +A+Q   +D+  +L 
Sbjct: 113 HTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  111 bits (280), Expect = 3e-30
 Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 5/125 (4%)

Query: 198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNV 257
           + G      A  G  + V   L R+  +P   +  G T L   +  G+      L+K   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGA 59

Query: 258 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYD 317
             NV D  G +P+H A ++   D  KVL+ +GAD +     G   + +++  G       
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG----HTA 115

Query: 318 LAKLL 322
           +   L
Sbjct: 116 VVSFL 120

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 72.8 bits (180), Expect = 6e-16
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           +L++ G D++  D  G   +H A+  G    V    L   ++ H +D  G TPL  A+Q 
Sbjct: 86  VLVEHGADVNVPDGTGALPIHLAVQEGHTAVV--SFLAAESDLHRRDARGLTPLELALQR 143

Query: 244 GAMQSVKLLIK 254
           GA   V +L  
Sbjct: 144 GAQDLVDILQG 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  143 bits (363), Expect = 2e-42
 Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 4/138 (2%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
             ++    I+  D++G T L  A    + AV+  LL+ GA+P +      + L  A   G
Sbjct: 21  TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG 80

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
               VK+L+   VDVN  D  G TPL  A+   +    K+LL +GAD + +T  G  ++D
Sbjct: 81  YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMD 140

Query: 305 MSLCYGRDFKSYDLAKLL 322
           +++  G       + +++
Sbjct: 141 LAVALGYR----SVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  129 bits (326), Expect = 7e-37
 Identities = 28/114 (24%), Positives = 52/114 (45%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
            LL  G D   + K   +AL  A       ++  LL  G + +  D +G TPL YAV   
Sbjct: 54  FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN 113

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKD 298
            ++ VK+L++   D  +  + G+  + +A+    R + +V+  +     +  K+
Sbjct: 114 HVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  117 bits (297), Expect = 2e-32
 Identities = 25/124 (20%), Positives = 49/124 (39%), Gaps = 4/124 (3%)

Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
               ++H+     +   ++  + +    +  D +G TPL +A   G +  V+ L++   D
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDL 318
             +      + L +A      DI K+LL  G D +    +G T L  ++           
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN----HVKC 117

Query: 319 AKLL 322
            K+L
Sbjct: 118 VKML 121

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 94.4 bits (236), Expect = 1e-23
 Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 4/92 (4%)

Query: 231 GDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
           G  +  +H     G M  +   I+    +N  D EG+TPL  A       + + LL NGA
Sbjct: 1   GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 291 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           D     K  ++AL ++   G      D+ K+L
Sbjct: 61  DPQLLGKGRESALSLACSKGY----TDIVKML 88

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  149 bits (378), Expect = 1e-41
 Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 4/141 (2%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           +LL    + +  +K GLT LH         V   L++ G         G TPLH A   G
Sbjct: 263 LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG 322

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
            ++ VK L+++  DVN     G++PLH A Q  + DI  +LL NGA  +  + DG T L 
Sbjct: 323 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLA 382

Query: 305 MSLCYGRDFKSYDLAKLLKIL 325
           ++   G       +  +LK++
Sbjct: 383 IAKRLG----YISVTDVLKVV 399

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  146 bits (370), Expect = 1e-40
 Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 4/137 (2%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           LL+     ++  K+GLT LH A+      ++  LL +G +PH    +G TPLH A +   
Sbjct: 165 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ 224

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
           ++  + L++Y    N    +G TPLH+A Q  + ++  +LL   A+ +   K G T L +
Sbjct: 225 VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL 284

Query: 306 SLCYGRDFKSYDLAKLL 322
               G       +A +L
Sbjct: 285 VAQEGH----VPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  144 bits (365), Expect = 8e-40
 Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 4/137 (2%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           LL  G   +  +    T LH A       V  +LL+  A  + K  D  TPLH A ++G 
Sbjct: 33  LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGH 92

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
              VKLL++ N + N+A   G TPLHIA +  + +    LL   A ++  TK G T L +
Sbjct: 93  TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHV 152

Query: 306 SLCYGRDFKSYDLAKLL 322
           +  YG+      +A+LL
Sbjct: 153 AAKYGK----VRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  141 bits (357), Expect = 1e-38
 Identities = 46/140 (32%), Positives = 67/140 (47%), Gaps = 4/140 (2%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
              LL  G   ++    G+T LH A       +++ LL K AN ++ +  G TPLH   Q
Sbjct: 228 ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ 287

Query: 243 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTA 302
            G +    +LIK+ V V+     G+TPLH+A    N  + K LL + AD + KTK G + 
Sbjct: 288 EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSP 347

Query: 303 LDMSLCYGRDFKSYDLAKLL 322
           L  +   G      D+  LL
Sbjct: 348 LHQAAQQGH----TDIVTLL 363

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  139 bits (352), Expect = 5e-38
 Identities = 44/138 (31%), Positives = 64/138 (46%), Gaps = 4/138 (2%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           +LL  G    S   +G T LH A    +  V   LL+ G + + +   G TPLH A Q G
Sbjct: 197 LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG 256

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
             + V LL+    + N+ +  G TPLH+  Q  +  +A VL+ +G      T+ G T L 
Sbjct: 257 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH 316

Query: 305 MSLCYGRDFKSYDLAKLL 322
           ++  YG       L K L
Sbjct: 317 VASHYGN----IKLVKFL 330

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  138 bits (350), Expect = 1e-37
 Identities = 42/137 (30%), Positives = 63/137 (45%), Gaps = 4/137 (2%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           LL+       + K G T LH A    K  V   LL + A+P+    +G TPLH AV    
Sbjct: 132 LLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNN 191

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
           +  VKLL+      +     G+TPLHIA +    ++A+ LL  G   + ++  G T L +
Sbjct: 192 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL 251

Query: 306 SLCYGRDFKSYDLAKLL 322
           +   G      ++  LL
Sbjct: 252 AAQEG----HAEMVALL 264

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  138 bits (349), Expect = 1e-37
 Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 4/140 (2%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
              LL     +++  KD  T LH A       ++  LL   ANP++    G TPLH A +
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122

Query: 243 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTA 302
            G +++V  L++          +G+TPLH+A +     +A++LL   A  +   K+G T 
Sbjct: 123 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP 182

Query: 303 LDMSLCYGRDFKSYDLAKLL 322
           L +++ +     + D+ KLL
Sbjct: 183 LHVAVHHN----NLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  137 bits (348), Expect = 2e-37
 Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 4/133 (3%)

Query: 190 GLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSV 249
           G+      + GLT LH A       ++ +LL++GA+P+V +    TPLH A + G  +  
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 250 KLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCY 309
           K L++    VN    +  TPLH A +  + ++ K+LL N A+ +  T  G T L ++   
Sbjct: 64  KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123

Query: 310 GRDFKSYDLAKLL 322
           G      +    L
Sbjct: 124 G----HVETVLAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  136 bits (344), Expect = 7e-37
 Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 4/137 (2%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           LL+   + +     G T LH A        +  LL K A+       G TPLH A + G 
Sbjct: 99  LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 158

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
           ++  +LL++ +   N A   G TPLH+A+   N DI K+LL  G        +G T L +
Sbjct: 159 VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI 218

Query: 306 SLCYGRDFKSYDLAKLL 322
           +          ++A+ L
Sbjct: 219 AAKQN----QVEVARSL 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  133 bits (338), Expect = 5e-36
 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 3/125 (2%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
            D+L+  G+ +D+  + G T LH A       ++  LL+  A+ + K   G +PLH A Q
Sbjct: 294 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ 353

Query: 243 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI---NGADKSRKTKDG 299
            G    V LL+K     N   ++G TPL IA +     +  VL +     +      K  
Sbjct: 354 QGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHR 413

Query: 300 KTALD 304
            +  +
Sbjct: 414 MSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  108 bits (273), Expect = 6e-27
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 222 KGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI 281
            G +       G TPLH A  +G +  VK L++     NV++ +  TPLH+A ++ + ++
Sbjct: 3   PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEV 62

Query: 282 AKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           AK LL N A  + K KD +T L  +   G      ++ KLL
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIG----HTNMVKLL 99

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 96.4 bits (241), Expect = 2e-22
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 12/114 (10%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           LL    D+++  K G + LH+A       +++ LL+ GA+P+    DG TPL  A ++G 
Sbjct: 330 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY 389

Query: 246 MQSVKLL---IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT 296
           +    +L         V V+D    +                +L    D+  + 
Sbjct: 390 ISVTDVLKVVTDETSFVLVSDKHRMSFPE---------TVDEILDVSEDEGEEL 434

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  140 bits (355), Expect = 5e-41
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 185 MLLD-GGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           + LD    D++  D  G + LH A    + AV+  L+ +GA  +V +    TPLH A   
Sbjct: 23  LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
           G    V+ L++Y  D+N  +  G  PLH A       +A+ L+ NGA  S   K G+  +
Sbjct: 83  GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV 142

Query: 304 DMSLCYGRDFKSYDLAKLL 322
           D +    R+     L +  
Sbjct: 143 DKAKAPLRE----LLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  124 bits (313), Expect = 1e-34
 Identities = 26/111 (23%), Positives = 47/111 (42%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           ML+  G  I+ +++   T LH A       ++  LL+  A+ +  +  G  PLHYA   G
Sbjct: 57  MLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG 116

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRK 295
             Q  + L+     V++ +  G  P+  A       + +     G + +R 
Sbjct: 117 QDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRI 167

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  118 bits (298), Expect = 1e-32
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 5/127 (3%)

Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGAN-PHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
             + +  +           +   L    N  +  D  G +PLH+A + G    V++LI  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS 315
              +NV +    TPLH+A    +RDI + LL   AD +   + G   L  +  +G+D   
Sbjct: 62  GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD--- 118

Query: 316 YDLAKLL 322
             +A+ L
Sbjct: 119 -QVAEDL 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 83.6 bits (208), Expect = 1e-19
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
            LL    DI++V++ G   LH A    ++ V   L+  GA   + +  G  P+  A    
Sbjct: 90  KLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPL 149

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ 275
                +   K   ++N        P      
Sbjct: 150 RELLRERAEKMGQNLNR------IPYKDTFW 174

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 55.9 bits (136), Expect = 9e-10
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 5/62 (8%)

Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGA-DKSRKTKDGKTALDMSLCYGRDFKSYDLAK 320
              E    +    +  N    ++ L N   D ++    G + L  +   GR      + +
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRS----AVVE 56

Query: 321 LL 322
           +L
Sbjct: 57  ML 58

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  141 bits (358), Expect = 7e-41
 Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 4/137 (2%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           + +   D+D+   DG T L  A     E ++  L+   A+ +  D  G + LH+A  V  
Sbjct: 78  IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 137

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
           + +  +L+K   + ++ +N   TPL +A +  + + AKVLL + A++       +   D+
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDI 197

Query: 306 SLCYGRDFKSYDLAKLL 322
           +         +D+ +LL
Sbjct: 198 AQERM----HHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  127 bits (322), Expect = 1e-35
 Identities = 39/140 (27%), Positives = 67/140 (47%), Gaps = 8/140 (5%)

Query: 186 LLDGGLDI-DSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
            +  G  + +  D+ G TALH A    + +A    LL   A+ +++D  G TPLH AV  
Sbjct: 10  FIYQGASLHNQTDRTGETALHLAARYSRSDAA-KRLLEASADANIQDNMGRTPLHAAVSA 68

Query: 244 GAMQSVKLLIKYN-VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTA 302
            A    ++LI+    D++   ++G TPL +A +     + + L+ + AD +     GK+A
Sbjct: 69  DAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 128

Query: 303 LDMSLCYGRDFKSYDLAKLL 322
           L  +        + D A +L
Sbjct: 129 LHWAAAVN----NVDAAVVL 144

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  120 bits (303), Expect = 7e-33
 Identities = 29/109 (26%), Positives = 55/109 (50%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
            L++   D+++VD  G +ALH A           LL+ GAN  +++    TPL  A + G
Sbjct: 110 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 169

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS 293
           + ++ K+L+ +  + ++ D+    P  IA +  + DI ++L      +S
Sbjct: 170 SYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  103 bits (259), Expect = 2e-26
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 6/110 (5%)

Query: 215 VISHLLRKGAN-PHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIA 273
           VIS  + +GA+  +  D  G T LH A +     + K L++ + D N+ DN G TPLH A
Sbjct: 6   VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65

Query: 274 IQSRNRDIAKVLLINGA-DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           + +  + + ++L+ N A D   +  DG T L ++           + + L
Sbjct: 66  VSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA----VEGMLEDL 111

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 78.2 bits (194), Expect = 3e-17
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 8/83 (9%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAII-GKKEAV---ISHLLRKGANPHVKDGDGATPLHYAV 241
           LL  G + D  +    T L  A   G  E     + H     AN  + D     P   A 
Sbjct: 144 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH----FANRDITDHMDRLPRDIAQ 199

Query: 242 QVGAMQSVKLLIKYNVDVNVADN 264
           +      V+LL +YN+  +   +
Sbjct: 200 ERMHHDIVRLLDEYNLVRSPQLH 222

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  139 bits (352), Expect = 1e-40
 Identities = 41/138 (29%), Positives = 75/138 (54%), Gaps = 6/138 (4%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           LL   +++++ +  G TAL    +G  E +   LL +GANP +KD  G   +H A + G 
Sbjct: 24  LLQNNVNVNAQNGFGRTALQVMKLGNPE-IARRLLLRGANPDLKDRTGFAVIHDAARAGF 82

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA-DKSRKTKDGKTALD 304
           + +++ L+++  DVN+ DNEG  PLH+A +  +  + + L+ + A +   +   G TA D
Sbjct: 83  LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD 142

Query: 305 MSLCYGRDFKSYDLAKLL 322
           ++  YG      ++  L+
Sbjct: 143 LARLYG----RNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  116 bits (293), Expect = 5e-32
 Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 7/128 (5%)

Query: 196 VDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIK 254
           + +     L  A   G  E  ++ LL+   N + ++G G T L      G  +  + L+ 
Sbjct: 1   MAEPWGNELASAAARGDLE-QLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL 58

Query: 255 YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFK 314
              + ++ D  G+  +H A ++   D  + LL   AD + +  +G   L ++   G    
Sbjct: 59  RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG---- 114

Query: 315 SYDLAKLL 322
              + + L
Sbjct: 115 HLRVVEFL 122

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  114 bits (288), Expect = 3e-31
 Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 1/106 (0%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           LL  G + D  D+ G   +H A        +  LL   A+ +++D +G  PLH A + G 
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGH 115

Query: 246 MQSVKLLIKYN-VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
           ++ V+ L+K+   +V   +++G T   +A      ++  ++  NGA
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  137 bits (348), Expect = 2e-40
 Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           +L+  G      D  G + LH A      +    LLR G +   +     TPLH A   G
Sbjct: 20  ILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG 78

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
               V++L+K+  DVN  D    T LH A +  ++++ ++L+  GAD   ++K  KTA D
Sbjct: 79  HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD 138

Query: 305 MSLCYGRDFKSYDLAKLLK 323
           +S+  G    + DLA++L+
Sbjct: 139 ISIDNG----NEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  115 bits (290), Expect = 9e-32
 Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 5/124 (4%)

Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
           D    L +A    ++  +  L+  GA     D  G +PLH A Q G   + ++L++  V 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDL 318
            +       TPLH+A    + +I +VLL +GAD + K     TAL  +  +       ++
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHN----HQEV 115

Query: 319 AKLL 322
            +LL
Sbjct: 116 VELL 119

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  141 bits (358), Expect = 3e-40
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 1/127 (0%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGD-GATPLHYAVQV 243
              D  L +++ + DG T LH A+I K   ++  L   GA+ +  +   G TPLH AV+ 
Sbjct: 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA 202

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
            A   ++LL+K   D       G TPL  A+   N  +A++L  +GA +     D  +  
Sbjct: 203 QAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPC 262

Query: 304 DMSLCYG 310
             S    
Sbjct: 263 SSSGSDS 269

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  121 bits (307), Expect = 7e-33
 Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANP---HVKDGDGATPLHYAVQVGAMQSV 249
              V +DG TALH A+I + E  +  LL   A      +++  G T LH A  +G   +V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 250 KLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
           + L      V VA+  G T LH+A + R    A VLL       R   D     
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ 115

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  110 bits (278), Expect = 1e-28
 Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 185 MLLDGGLDIDSVDKD-GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           +L D G D++  +   G T LH A+  +  +V+  LL+ GA+P  +   G TPL  A+  
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR 235

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
                 +LL  +         +  +P   +    + D      
Sbjct: 236 PNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGD 278

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  109 bits (274), Expect = 4e-28
 Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 19/153 (12%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATP-------- 236
            L   G  +   ++ G TALH A   +       LL+   +      D            
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 237 ------LHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
                    +      +       + + +   + +G TPLH+A+  ++ ++ ++L   GA
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 291 DKSRKTKD-GKTALDMSLCYGRDFKSYDLAKLL 322
           D ++     G+T L +++       +  + +LL
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQ----AASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  107 bits (269), Expect = 2e-27
 Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 21/154 (13%)

Query: 186 LLDGGLDIDSV---DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
           LL      + +   +  G TALH A I  + + +  L   GA   V +  G T LH A +
Sbjct: 28  LLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACR 87

Query: 243 VGAMQSVKLLIKYNVDVNVADNEGW-------------TPLHIAIQSRNRDIAKVLLI-N 288
           V A     +L++         ++ +              P  +  Q    +  +      
Sbjct: 88  VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW 147

Query: 289 GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
                 +  DG T L +++ +       ++ +LL
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHK----DAEMVRLL 177

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 73.7 bits (182), Expect = 3e-15
 Identities = 15/70 (21%), Positives = 23/70 (32%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           LL  G D  +    G T L  A++     +   L   GA      GD  +P   +     
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270

Query: 246 MQSVKLLIKY 255
             +     +Y
Sbjct: 271 SDNRDEGDEY 280

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  142 bits (361), Expect = 5e-40
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 4/137 (2%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           L    ++  + D    T LH A    +  ++  LL+ GA+ H KD  G  PLH A   G 
Sbjct: 44  LTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGH 103

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
            +  +LL+K+   VN  D   +TPLH A      ++  +LL +GAD +     GK+A+DM
Sbjct: 104 YEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDM 163

Query: 306 SLCYGRDFKSYDLAKLL 322
           +          +     
Sbjct: 164 APTPE----LRERLTYE 176

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  136 bits (344), Expect = 2e-37
 Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 3/123 (2%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAII---GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
            L   +      +   TALH A+     K++ V   LLRKGAN + K+ D  TPLH A +
Sbjct: 197 TLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAE 256

Query: 243 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTA 302
                 +++L K+   +N  D+ G T LH A  + +    ++LL  G+D S  +  G TA
Sbjct: 257 RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA 316

Query: 303 LDM 305
             M
Sbjct: 317 AQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  136 bits (344), Expect = 2e-37
 Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 5/138 (3%)

Query: 186 LLDGGLDIDSVDKDGLTALHK-AIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           L D         +     L + A  G +E +++ L     N H  DG  +TPLH A    
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYN 69

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
            ++ V+LL+++  DV+  D  G  PLH A    + ++ ++LL +GA  +       T L 
Sbjct: 70  RVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH 129

Query: 305 MSLCYGRDFKSYDLAKLL 322
            +    R     ++  LL
Sbjct: 130 EAASKNRV----EVCSLL 143

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  127 bits (321), Expect = 3e-34
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
            ++LL  G +++  +KD +T LH A       V+  L + GA  +  D  G T LH A  
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL 289

Query: 243 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKT 301
            G +Q+ +LL+ Y  D ++   +G+T   +       +  + +L           D + 
Sbjct: 290 AGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  125 bits (316), Expect = 2e-33
 Identities = 36/158 (22%), Positives = 56/158 (35%), Gaps = 22/158 (13%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           LL  G D+ + DK GL  LH A       V   LL+ GA  +  D    TPLH A     
Sbjct: 77  LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNR 136

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKV--------------------- 284
           ++   LL+ +  D  + +  G + + +A     R+                         
Sbjct: 137 VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKK 196

Query: 285 LLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
            L       ++ +  +TAL          K   +A+LL
Sbjct: 197 TLALEIINFKQPQSHETAL-HCAVASLHPKRKQVAELL 233

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  107 bits (269), Expect = 1e-26
 Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 18/126 (14%)

Query: 198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQS-VKLLIKYN 256
           + G +AL              L    A   +        L  A + G  +  + LL   N
Sbjct: 2   EFGKSALD-------------LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLN 48

Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSY 316
           V+ + +D    TPLH+A       I ++LL +GAD   K K G   L  +  YG     Y
Sbjct: 49  VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG----HY 104

Query: 317 DLAKLL 322
           ++ +LL
Sbjct: 105 EVTELL 110

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.0 bits (136), Expect = 4e-09
 Identities = 16/59 (27%), Positives = 20/59 (33%), Gaps = 7/59 (11%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           LL  G D   +   G TA         EAV   +L +       D D    L  A + G
Sbjct: 299 LLSYGSDPSIISLQGFTAAQMG----NEAVQ-QILSESTPMRTSDVDY--RLLEASKAG 350

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  137 bits (347), Expect = 5e-40
 Identities = 56/138 (40%), Positives = 81/138 (58%), Gaps = 6/138 (4%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           L+  G D+++ D  G T LH A   G  E ++  LL+ GA+ +  D  G TPL  A   G
Sbjct: 33  LMANGADVNAEDASGWTPLHLAAFNGHLE-IVEVLLKNGADVNAVDHAGMTPLRLAALFG 91

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
            ++ V++L+K   DVN  D EG TPLH+A    + +I +VLL NGAD + + K GKTA D
Sbjct: 92  HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFD 151

Query: 305 MSLCYGRDFKSYDLAKLL 322
           +S+  G    + DLA++L
Sbjct: 152 ISIDNG----NEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  122 bits (310), Expect = 2e-34
 Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 6/127 (4%)

Query: 197 DKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
             D    L +A   G+ +  +  L+  GA+ + +D  G TPLH A   G ++ V++L+K 
Sbjct: 11  GSDLGKKLLEAARAGRDD-EVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69

Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS 315
             DVN  D+ G TPL +A    + +I +VLL NGAD +    +G T L ++  +G     
Sbjct: 70  GADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG----H 125

Query: 316 YDLAKLL 322
            ++ ++L
Sbjct: 126 LEIVEVL 132

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  113 bits (285), Expect = 1e-30
 Identities = 37/102 (36%), Positives = 59/102 (57%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           +LL  G D+++VD  G+T L  A +     ++  LL+ GA+ +  D +G TPLH A   G
Sbjct: 65  VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG 124

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
            ++ V++L+K   DVN  D  G T   I+I + N D+A++L 
Sbjct: 125 HLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  100 bits (251), Expect = 9e-26
 Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 5/102 (4%)

Query: 222 KGANPHVKDG-DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRD 280
           +G++ H   G D    L  A + G    V++L+    DVN  D  GWTPLH+A  + + +
Sbjct: 2   RGSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 281 IAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           I +VLL NGAD +     G T L ++  +G      ++ ++L
Sbjct: 62  IVEVLLKNGADVNAVDHAGMTPLRLAALFG----HLEIVEVL 99

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 73.6 bits (182), Expect = 5e-16
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           +LL  G D+++ D +G T LH A + G  E ++  LL+ GA+ + +D  G T    ++  
Sbjct: 98  VLLKNGADVNANDMEGHTPLHLAAMFGHLE-IVEVLLKNGADVNAQDKFGKTAFDISIDN 156

Query: 244 GAMQSVKLLIKYN 256
           G     ++L K N
Sbjct: 157 GNEDLAEILQKLN 169

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  135 bits (343), Expect = 2e-39
 Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 185 MLLDGGLD-IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
             L  G + ++  D+ G T L  A    +   +  LL  GA+PH+   +  + L  A   
Sbjct: 20  EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG 79

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
           G    V LL++ +VD+N+ D  G TPL  A++  +    + LL  GAD + +   G T +
Sbjct: 80  GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPM 139

Query: 304 DMSLCYGRDFKSYDLAKLL 322
           D+++  G       + +++
Sbjct: 140 DLAVALG----YRKVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  134 bits (339), Expect = 1e-38
 Identities = 28/117 (23%), Positives = 55/117 (47%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
            LL+ G D   + K+  +AL  A  G    ++  LL +  + ++ D +G TPL YAV+  
Sbjct: 54  FLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN 113

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKT 301
            ++ V+ L+    D+    + G+TP+ +A+    R + +V+  +     +       
Sbjct: 114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  110 bits (277), Expect = 1e-29
 Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 200 GLTALHKAIIGKKEAVISHLLRKGAN-PHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
              ++H+     +   +   LRKG N  +  D  G TPL +A   G +++V+ L+++  D
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDL 318
            ++   E  + L +A      DI  +LL    D +    +G T L  ++           
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHV----KC 117

Query: 319 AKLL 322
            + L
Sbjct: 118 VEAL 121

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 95.9 bits (240), Expect = 3e-24
 Identities = 21/85 (24%), Positives = 42/85 (49%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           +LL+  +DI+  D +G T L  A+ G     +  LL +GA+   +   G TP+  AV +G
Sbjct: 87  LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG 146

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTP 269
             +  +++  + + +  ++     P
Sbjct: 147 YRKVQQVIENHILKLFQSNLVPADP 171

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  135 bits (343), Expect = 3e-39
 Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 2/117 (1%)

Query: 189 GGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQ 247
             ++   ++    T LH A    +   V+ +LL+ GA+ H KD  G  PLH A   G  +
Sbjct: 31  QSVNCRDIEGRQSTPLHFAAGYNRVS-VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYE 89

Query: 248 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
             +LL+K+   VNVAD   +TPLH A      +I K+LL +GAD ++K +DG T LD
Sbjct: 90  VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD 146

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  121 bits (306), Expect = 6e-34
 Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 11/131 (8%)

Query: 196 VDKDGLTALHKAII-GKKEAV---ISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKL 251
            + +    L +A   G  E V    +    +  N    +G  +TPLH+A     +  V+ 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 60

Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
           L+++  DV+  D  G  PLH A    + ++A++L+ +GA  +       T L  +   G 
Sbjct: 61  LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG- 119

Query: 312 DFKSYDLAKLL 322
               Y++ KLL
Sbjct: 120 ---KYEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  115 bits (290), Expect = 1e-31
 Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 3/106 (2%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           LL  G D+ + DK GL  LH A   G  E V   L++ GA  +V D    TPLH A   G
Sbjct: 61  LLQHGADVHAKDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVADLWKFTPLHEAAAKG 119

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
             +  KLL+++  D    + +G TPL +  +  + DI  +L  + A
Sbjct: 120 KYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 67.0 bits (165), Expect = 9e-14
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           +L+  G  ++  D    T LH+A   GK E +   LL+ GA+P  K+ DG TPL      
Sbjct: 93  LLVKHGAVVNVADLWKFTPLHEAAAKGKYE-ICKLLLQHGADPTKKNRDGNTPLDLVKD- 150

Query: 244 GAMQSVKLLIKY 255
           G      LL   
Sbjct: 151 GDTDIQDLLRGD 162

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  137 bits (349), Expect = 3e-39
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 4/134 (2%)

Query: 189 GGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQS 248
              D+D+   DG T L  A     E ++  L+   A+ +  D  G + LH+A  V  + +
Sbjct: 113 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 172

Query: 249 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLC 308
             +L+K   + ++ +N   TPL +A +  + + AKVLL + A++       +   D++  
Sbjct: 173 AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQE 232

Query: 309 YGRDFKSYDLAKLL 322
                  +D+ +LL
Sbjct: 233 RM----HHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  137 bits (347), Expect = 6e-39
 Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 5/138 (3%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGA-NPHVKDGDGATPLHYAVQVG 244
           LL+   D +  D  G T LH A+    + V   L+R  A +   +  DG TPL  A ++ 
Sbjct: 76  LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA 135

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
               ++ LI  + DVN  D+ G + LH A    N D A VLL NGA+K  +    +T L 
Sbjct: 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF 195

Query: 305 MSLCYGRDFKSYDLAKLL 322
           ++   G    SY+ AK+L
Sbjct: 196 LAAREG----SYETAKVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  121 bits (307), Expect = 5e-33
 Identities = 28/107 (26%), Positives = 54/107 (50%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
            L++   D+++VD  G +ALH A           LL+ GAN  +++    TPL  A + G
Sbjct: 142 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG 201

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 291
           + ++ K+L+ +  + ++ D+    P  IA +  + DI ++L +    
Sbjct: 202 SYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  119 bits (302), Expect = 3e-32
 Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 19/147 (12%)

Query: 191 LDIDSVDKDGLTALHKAIIGKKEAVISH-------------LLRKGANPH-VKDGDGATP 236
           +D++    DG T L  A          +              + +GA+ H   D  G T 
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 237 LHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA-DKSRK 295
           LH A +     + K L++ + D N+ DN G TPLH A+ +  + + ++L+ N A D   +
Sbjct: 61  LHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR 120

Query: 296 TKDGKTALDMSLCYGRDFKSYDLAKLL 322
             DG T L ++           + + L
Sbjct: 121 MHDGTTPLILAARLA----VEGMLEDL 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 40.5 bits (96), Expect = 3e-04
 Identities = 8/43 (18%), Positives = 14/43 (32%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPH 227
           +LLD   + D  D         A       ++  L  +  + H
Sbjct: 208 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  135 bits (342), Expect = 6e-39
 Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 4/137 (2%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           L++    ++  D +G TAL  A+   +  +   LL KG+N + KD  G TPL +++  G 
Sbjct: 54  LVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY 113

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
            +    L+++  +VN  + EG TPL +A +    +I K LL  GAD S +   G TA   
Sbjct: 114 SEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEAS 173

Query: 306 SLCYGRDFKSYDLAKLL 322
           +  +G      ++ K+ 
Sbjct: 174 ARIFG----RQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  126 bits (319), Expect = 2e-35
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 4/132 (3%)

Query: 191 LDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVK 250
              +  D    T L  A +   E  I  L+        KD +G+T L +AV+   +   +
Sbjct: 26  FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAE 85

Query: 251 LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
            L+    +VN  D  G TPL  +I     +++  LL +GA+ + +  +G+T L ++  YG
Sbjct: 86  KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG 145

Query: 311 RDFKSYDLAKLL 322
                 ++ K L
Sbjct: 146 ----RSEIVKKL 153

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  108 bits (272), Expect = 1e-28
 Identities = 29/102 (28%), Positives = 49/102 (48%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
            LL  G ++++ D  G T L  +II     +   LL  GAN + ++ +G TPL  A + G
Sbjct: 86  KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG 145

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
             + VK L++   D++  D  G T    A     +++ K+  
Sbjct: 146 RSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  106 bits (267), Expect = 6e-28
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 10/128 (7%)

Query: 195 SVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIK 254
            +DK+G            E  I+  L    N   +D    TPL  A  +G   ++  L++
Sbjct: 3   HMDKNGEIVEKIK----DEKSINQNLDFLRN--YRDSYNRTPLMVACMLGMENAIDKLVE 56

Query: 255 YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFK 314
               +   D EG T L  A+++    IA+ LL  G++ + K   GKT L  S+ +G    
Sbjct: 57  NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFG---- 112

Query: 315 SYDLAKLL 322
             +++  L
Sbjct: 113 YSEMSYFL 120

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 78.6 bits (195), Expect = 1e-17
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 13/100 (13%)

Query: 223 GANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 282
           G++    D +G        +    Q++  L       N  D+   TPL +A      +  
Sbjct: 1   GSH---MDKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAI 51

Query: 283 KVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
             L+ N      K  +G TAL  ++          +A+ L
Sbjct: 52  DKLVENFDKLEDKDIEGSTALIWAVKNN----RLGIAEKL 87

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 72.4 bits (179), Expect = 2e-15
 Identities = 17/71 (23%), Positives = 32/71 (45%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           LL+ G +++  + +G T L  A    +  ++  LL  GA+   +D  G T    A   G 
Sbjct: 120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR 179

Query: 246 MQSVKLLIKYN 256
            + +K+  +  
Sbjct: 180 QEVIKIFTEVR 190

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  135 bits (343), Expect = 2e-38
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 4/134 (2%)

Query: 189 GGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQS 248
           G +D++  D  G T +  A   K   ++  LL KG++ +++D +    LH+A   G +  
Sbjct: 100 GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI 159

Query: 249 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLC 308
            ++L+    D++  +  G +PLHIA +    D   + L   +D + K K+G+T L  +  
Sbjct: 160 AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219

Query: 309 YGRDFKSYDLAKLL 322
                     A  +
Sbjct: 220 NS----QVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  132 bits (334), Expect = 3e-37
 Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           ML+  G +ID+  +D  T L +A        + +L++ GA    KD +G+T LH A + G
Sbjct: 29  MLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKG 88

Query: 245 AMQSVKLLIKYN-VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
             + V+ L+    +DVN  D+ GWTP+  A + ++ D+ K+LL  G+D + +  +    L
Sbjct: 89  HYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICL 148

Query: 304 DMSLCYGRDFKSYDLAKLL 322
             +   G      D+A++L
Sbjct: 149 HWAAFSG----CVDIAEIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  124 bits (314), Expect = 3e-34
 Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 7/133 (5%)

Query: 192 DIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVK 250
           +     ++  + LH A   G  + +   L++ GAN      D  TPL  A +   +++VK
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVD-ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 251 LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA-DKSRKTKDGKTALDMSLCY 309
            LIK    V+  D EG T LH+A +  + ++ + LL NG  D + +   G T +  +  Y
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY 121

Query: 310 GRDFKSYDLAKLL 322
                  DL KLL
Sbjct: 122 K----HVDLVKLL 130

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  116 bits (293), Expect = 3e-31
 Identities = 29/107 (27%), Positives = 43/107 (40%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           +LL  G DI+  D +    LH A       +   LL    + H  +  G +PLH A +  
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAREN 188

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 291
               V L +  + DV + + EG TPL  A  +     A  +     D
Sbjct: 189 RYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  100 bits (252), Expect = 3e-25
 Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 224 ANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAK 283
            N  ++  +  +PLH A + G +    +L++   +++    +  TPL  A ++ + +  K
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 284 VLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
            L+  GA    K  +G T L ++   G     Y++ + L
Sbjct: 62  YLIKAGALVDPKDAEGSTCLHLAAKKG----HYEVVQYL 96

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 72.4 bits (179), Expect = 4e-15
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS 315
           +++  +      +PLH A ++ + DI  +L+  GA+    ++D +T L  +         
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENN----H 56

Query: 316 YDLAKLL 322
            +  K L
Sbjct: 57  LEAVKYL 63

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  132 bits (334), Expect = 2e-38
 Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 7/134 (5%)

Query: 190 GLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQS 248
           G+D  + +  G T LH A I G   +V  +LL+ G++P+VKD  G TPLH A   G ++ 
Sbjct: 1   GIDPFT-NHRGETLLHIASIKGDIPSV-EYLLQNGSDPNVKDHAGWTPLHEACNHGHLKV 58

Query: 249 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLC 308
           V+LL+++   VN    +  +PLH A ++ + DI K+LL  GA ++     G   +D +  
Sbjct: 59  VELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDD 118

Query: 309 YGRDFKSYDLAKLL 322
                    L  L 
Sbjct: 119 ESMK----SLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  114 bits (288), Expect = 1e-31
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 2/110 (1%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
            LL  G D +  D  G T LH+A   G  + V+  LL+  A  +       +PLH A + 
Sbjct: 28  YLLQNGSDPNVKDHAGWTPLHEACNHGHLK-VVELLLQHKALVNTTGYQNDSPLHDAAKN 86

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS 293
           G +  VKLL+ Y    N  +  G  P+        + +  +   N +  +
Sbjct: 87  GHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSA 136

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  134 bits (339), Expect = 7e-38
 Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 6/139 (4%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG- 244
           L+  G D   +D +G + +H A      +++++L+ KG +  + D +G TPL +A     
Sbjct: 95  LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH 154

Query: 245 AMQSVKLLIKYNVDVNVADN-EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
           ++   +LL+ +NV VN+ D     T LH A+ + N  +  +LL  GA+   +   G++AL
Sbjct: 155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214

Query: 304 DMSLCYGRDFKSYDLAKLL 322
           D++        +  +   L
Sbjct: 215 DLAKQRK----NVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  132 bits (335), Expect = 3e-37
 Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGD-GATPLHYAVQVG 244
           L++ G D+   DK+ +T LH A I  +  ++ + + KGA      GD  +TPLH+A + G
Sbjct: 28  LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG 87

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
            +  V  L+KY  D ++ D EG + +H+A Q  +  I   L+  G D     ++G T L
Sbjct: 88  HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  127 bits (322), Expect = 2e-35
 Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 7/140 (5%)

Query: 186 LLDGGLDIDSVDKD-GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
            +  G  +D +  D   T LH A      +++  L++ GA+P + DG+G + +H A Q G
Sbjct: 61  YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFG 120

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNR-DIAKVLLINGADKSRKTK-DGKTA 302
               V  LI    DV++ D  G TPL  A    +  D  ++LL      +   K    TA
Sbjct: 121 HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTA 180

Query: 303 LDMSLCYGRDFKSYDLAKLL 322
           L  ++  G    +  +  LL
Sbjct: 181 LHWAVLAG----NTTVISLL 196

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  123 bits (311), Expect = 8e-34
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 5/131 (3%)

Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +  +D      + KA           L+  G +    D +  T LH+A     +  VK  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 253 IKYNVDVNVADNE-GWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
           I     V+    +   TPLH A +  +  +   L+  GAD S    +G + + ++  +G 
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFG- 120

Query: 312 DFKSYDLAKLL 322
                 +   L
Sbjct: 121 ---HTSIVAYL 128

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  114 bits (288), Expect = 2e-30
 Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 2/112 (1%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKD-GDGATPLHYAVQV 243
           L+  G D+D +D++G+T L  A            LL    + ++ D     T LH+AV  
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA 187

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRK 295
           G    + LL++   +V+  + +G + L +A Q +N  +   L      K   
Sbjct: 188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 42.8 bits (102), Expect = 6e-05
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKD 230
           +LL+ G ++D+ +  G +AL  A   K   +I+HL          +
Sbjct: 195 LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  133 bits (338), Expect = 9e-38
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 188 DGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDG-DGATPLHYAVQVGA 245
            G LD+++ + DGLTALH A+    +E  +  LL +GA+    D   G +PL +AV+  +
Sbjct: 104 PGTLDLEARNYDGLTALHVAVNTECQE-TVQLLLERGADIDAVDIKSGRSPLIHAVENNS 162

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
           +  V+LL+++  +VN     G + LH A       + + L+ +GAD S K     T L +
Sbjct: 163 LSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222

Query: 306 SLCYGRDFKSYDLAKLL 322
           +          D+ +  
Sbjct: 223 ARSRR----VIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  130 bits (330), Expect = 1e-36
 Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 9/144 (6%)

Query: 184 DMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           ++   GG ++D  +    T LH A+I    +V+  L+  GA+P   D  G T  H A + 
Sbjct: 30  NLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH 89

Query: 244 GAMQSVKLLIKY----NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRK-TKD 298
            +   ++ L+       +D+   + +G T LH+A+ +  ++  ++LL  GAD      K 
Sbjct: 90  RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS 149

Query: 299 GKTALDMSLCYGRDFKSYDLAKLL 322
           G++ L  ++       S  + +LL
Sbjct: 150 GRSPLIHAVENN----SLSMVQLL 169

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  128 bits (325), Expect = 9e-36
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 12/138 (8%)

Query: 193 IDSVDKDGLTALHKAII-GKKEAV---ISHLLRKGANPHVKDGDGATPLHYAVQVGAMQS 248
               D+DG T LH A++ G   AV   ++   + G    + +    TPLH AV       
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 249 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA----DKSRKTKDGKTALD 304
           V+LL+         D  G T  H+A + R+    + LL + A    D   +  DG TAL 
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121

Query: 305 MSLCYGRDFKSYDLAKLL 322
           +++         +  +LL
Sbjct: 122 VAVNTE----CQETVQLL 135

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  116 bits (294), Expect = 3e-31
 Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 1/107 (0%)

Query: 185 MLLDGGLDIDSVD-KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           +LL+ G DID+VD K G + L  A+     +++  LL+ GAN + +   G++ LH A   
Sbjct: 134 LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR 193

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
           G +  V+ L++   D ++ +    TPL +A   R  DI +      A
Sbjct: 194 GLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.2 bits (103), Expect = 4e-05
 Identities = 7/40 (17%), Positives = 14/40 (35%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGAN 225
           L+  G D    +    T L  A   +   ++     + A+
Sbjct: 202 LVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  134 bits (341), Expect = 1e-37
 Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 5/156 (3%)

Query: 167 KWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANP 226
           + R  Q          ++  +           DG   L     G  E V   LL +GA+ 
Sbjct: 8   QKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEV-LRLLERGADI 66

Query: 227 HVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
           +  + DG T LH A     +  VK L++   ++N  DNEGW PLH A      DIA+ L+
Sbjct: 67  NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI 126

Query: 287 INGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
             GA       +G T LD++          +L +  
Sbjct: 127 SQGAHVGAVNSEGDTPLDIAEEEA----MEELLQNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  121 bits (305), Expect = 3e-32
 Identities = 33/112 (29%), Positives = 46/112 (41%)

Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           ++    D   A  +            L     N       G T LH A   G  + +KLL
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
           I+   DVN+ D +GWTPLH A      +  ++L+ N  D     K G+TA D
Sbjct: 219 IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD 270

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  120 bits (304), Expect = 3e-32
 Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 33/165 (20%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           LL+ G DI+  + DGLTALH+A I    + ++  L+  GAN +  D +G  PLH A   G
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVD-MVKFLVENGANINQPDNEGWIPLHAAASCG 117

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL------------------- 285
            +   + LI     V   ++EG TPL IA +    ++ +                     
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM 177

Query: 286 -------LI-NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
                  L     +  R  K G TAL ++   G      ++ KLL
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKG----YTEVLKLL 218

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  116 bits (292), Expect = 2e-30
 Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 5/130 (3%)

Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
           +   D               E  +   + K     VK  DG      A   G  + V  L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59

Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD 312
           ++   D+N A+ +G T LH A    N D+ K L+ NGA+ ++   +G   L  +   G  
Sbjct: 60  LERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG-- 117

Query: 313 FKSYDLAKLL 322
               D+A+ L
Sbjct: 118 --YLDIAEYL 125

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  112 bits (283), Expect = 3e-29
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 2/115 (1%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
            L  G ++     K G TALH A   G  E V+  L++   + ++KD DG TPLH A   
Sbjct: 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTE-VLKLLIQARYDVNIKDYDGWTPLHAAAHW 242

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKD 298
           G  ++ ++L++   D+   +  G T   +A +     + ++        S K + 
Sbjct: 243 GKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.0 bits (188), Expect = 5e-16
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAV 241
           + +L+    D++  D DG T LH A   GK+EA    L+    +    +  G T    A 
Sbjct: 215 LKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC-RILVENLCDMEAVNKVGQTAFDVAD 273

Query: 242 QVGAMQSVKLLIKYNVDVNVADNE 265
           +       +L  K N+  +    +
Sbjct: 274 EDILGYLEELQKKQNLLHSEKREK 297

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  129 bits (328), Expect = 3e-37
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGAT-PLHYAVQV 243
            LL+ G + ++ +  G   +   ++G    V   LL  GA P+  D    T P+H A + 
Sbjct: 30  ALLEAGANPNAPNSYGRRPIQVMMMGSAR-VAELLLLHGAEPNCADPATLTRPVHDAARE 88

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
           G + ++ +L +    ++V D  G  P+ +A +  +RD+A+ L                A 
Sbjct: 89  GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAA 148

Query: 304 D 304
           +
Sbjct: 149 E 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  118 bits (299), Expect = 4e-33
 Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 8/137 (5%)

Query: 187 LDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAM 246
           ++         +     L  A    +   +  LL  GANP+  +  G  P+   +  G+ 
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSA 57

Query: 247 QSVKLLIKYNVDVNVADNEGWT-PLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
           +  +LL+ +  + N AD    T P+H A +    D   VL   GA    +   G+  +D+
Sbjct: 58  RVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117

Query: 306 SLCYGRDFKSYDLAKLL 322
           +   G      D+A+ L
Sbjct: 118 AEELG----HRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 84.1 bits (209), Expect = 6e-20
 Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 6/99 (6%)

Query: 185 MLLDGGLDIDSVDKDGLT-ALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           +LL  G + +  D   LT  +H A        +  L R GA   V+D  G  P+  A ++
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEEL 121

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 282
           G     + L             G     I       DI 
Sbjct: 122 GHRDVARYLRAAAGGTR-----GSNHARIDAAEGPSDIP 155

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  133 bits (338), Expect = 3e-37
 Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 6/137 (4%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           LL  G  ++ V  D  T L  A +      ++ LL+ GA+    + D A+P+H A + G 
Sbjct: 111 LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGH 169

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
           ++ V  LI Y  +++   +   TPL++A +++ R   K LL +GAD + + K   + L  
Sbjct: 170 VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHA 228

Query: 306 SLCYGRDFKSYDLAKLL 322
            +       S +LA LL
Sbjct: 229 VVRTA----SEELACLL 241

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  124 bits (315), Expect = 6e-34
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 2/126 (1%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           +LL  G  +   + D  + +H+A        ++ L+  G N   K     TPL+ A +  
Sbjct: 143 LLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ 201

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
               VK L++   DVN       +PLH  +++ + ++A +L+  GAD   K  +GK  ++
Sbjct: 202 QRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVE 260

Query: 305 MSLCYG 310
           +     
Sbjct: 261 LVPPES 266

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  123 bits (311), Expect = 2e-33
 Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           LL   L  D       + +H+A I   +  + +L+ +G   ++   D  +PLH A   G 
Sbjct: 47  LLSNPLMGD--AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGH 104

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
           +  VK+L+K+   VN    +  TPL  A  S + D   +LL +GA       D  + +
Sbjct: 105 LSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPI 161

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  113 bits (286), Expect = 9e-30
 Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 4/110 (3%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
           ++ L+  G +ID       T L+ A   ++ A +  LL  GA+ + +     +PLH  V+
Sbjct: 173 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVR 231

Query: 243 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI-NGAD 291
             + +   LL+ +  D    + EG  P+ +        +A++ L   GA 
Sbjct: 232 TASEELACLLMDFGADTQAKNAEGKRPVELV--PPESPLAQLFLEREGAS 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  110 bits (278), Expect = 1e-28
 Identities = 35/142 (24%), Positives = 51/142 (35%), Gaps = 16/142 (11%)

Query: 186 LLDGGLDIDSVDK-----DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYA 240
           L+  G  + S+D      DG                  LL              +P+H A
Sbjct: 14  LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR-----LLSNPLM--GDAVSDWSPMHEA 66

Query: 241 VQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGK 300
              G   S++ LI     VN+   +  +PLH A    +    K+LL +GA  +  T D  
Sbjct: 67  AIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH 126

Query: 301 TALDMSLCYGRDFKSYDLAKLL 322
           T L  +   G    S+D   LL
Sbjct: 127 TPLFNACVSG----SWDCVNLL 144

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 83.7 bits (208), Expect = 1e-18
 Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 17/118 (14%)

Query: 210 GKKEAVISHLLRKGANPHVKDG-----DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN 264
                  S L+ +G++    DG     DG+ P       G    ++LL            
Sbjct: 6   HHHHHS-SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPG----IRLLSNPL---MGDAV 57

Query: 265 EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
             W+P+H A    ++   + L+  G   +  T D  + L  +   G         K+L
Sbjct: 58  SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGG----HLSCVKIL 111

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 48.6 bits (117), Expect = 9e-07
 Identities = 8/88 (9%), Positives = 19/88 (21%), Gaps = 16/88 (18%)

Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNE-----GWTPLHIAIQSRNRDIAKVLLINGADKSR 294
                       L+     +   D +     G  P          D   + L++      
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPR------DFPGIRLLSNPLMG- 54

Query: 295 KTKDGKTALDMSLCYGRDFKSYDLAKLL 322
                 + +  +  +G         + L
Sbjct: 55  DAVSDWSPMHEAAIHGHQ----LSLRNL 78

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  130 bits (329), Expect = 1e-36
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 9/142 (6%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDG---DGATPLHYAVQ 242
           L      +   D+DG   LH ++  +   + S LL K  N ++ D     G TP H A  
Sbjct: 22  LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81

Query: 243 VGAMQSVKLLI--KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGK 300
           VG ++ VK L       D+N   N+G T LH+A+  +  ++++ L+ NGA    K K  +
Sbjct: 82  VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ 141

Query: 301 TALDMSLCYGRDFKSYDLAKLL 322
             L  +   G    S  L +LL
Sbjct: 142 IPLHRAASVG----SLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  130 bits (329), Expect = 2e-36
 Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 2/118 (1%)

Query: 190 GLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSV 249
             D++ +   G+T LH A+  K   V   L+  GA+  +KD     PLH A  VG+++ +
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLI 156

Query: 250 KLLIKY-NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN-GADKSRKTKDGKTALDM 305
           +LL       VN  D +GWTPL  A+   + D A +L+   GA+       G  A D+
Sbjct: 157 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  127 bits (321), Expect = 2e-35
 Identities = 37/148 (25%), Positives = 53/148 (35%), Gaps = 14/148 (9%)

Query: 183 MDMLLDGGLDI---DSVDKDGLTALHKAII-GKKEAV---ISHLLRKGANPHVKDGDGAT 235
              LL    ++   D  D  G T  H A   G  E V            + +     G T
Sbjct: 52  TSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR--PLKPDLNKITNQGVT 109

Query: 236 PLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING-ADKSR 294
            LH AV     +  + LI+    V + D     PLH A    +  + ++L   G +  + 
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169

Query: 295 KTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           + K G T L  +L  G      D A LL
Sbjct: 170 QDKQGWTPLFHALAEG----HGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  116 bits (294), Expect = 2e-31
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 10/129 (7%)

Query: 200 GLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
               LH+A +  +   V   L  K +    KD DG  PLH++V   A +    L+    +
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 259 VNV---ADNEGWTPLHIAIQSRNRDIAKVLL--INGADKSRKTKDGKTALDMSLCYGRDF 313
           VN+    D+ GWTP HIA    N ++ K L       D ++ T  G T L +++      
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKK--- 118

Query: 314 KSYDLAKLL 322
             +++++ L
Sbjct: 119 -WFEVSQFL 126

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 64.4 bits (158), Expect = 2e-12
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 189 GGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQ 247
           G   ++  DK G T L  A+  G  +A +  + + GA   + D  GA     A+     Q
Sbjct: 163 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQ 219

Query: 248 SVKLLIK 254
             K  + 
Sbjct: 220 VKKFFLN 226

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  131 bits (331), Expect = 3e-36
 Identities = 30/138 (21%), Positives = 54/138 (39%), Gaps = 7/138 (5%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
                 D    D  G +A + AI      ++  LL  GA  ++ + +   PLH A  +  
Sbjct: 17  SFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQAATLED 74

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG-KTALD 304
            + VK+L+   +D +  D++G T L+ A+ S N    K+ +          K G KT+  
Sbjct: 75  TKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFY 134

Query: 305 MSLCYGRDFKSYDLAKLL 322
            ++          +    
Sbjct: 135 HAVMLN----DVSIVSYF 148

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  123 bits (311), Expect = 2e-33
 Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 7/140 (5%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDG-ATPLHYAVQV 243
           +LL  GLD    D  G TAL+ A+       +   ++K          G  T  ++AV +
Sbjct: 80  ILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML 139

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKT-A 302
             +  V   +   +          + +HI I++ + D+  +LL      +          
Sbjct: 140 NDVSIVSYFLS-EIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPD 198

Query: 303 LDMSLCYGRDFKSYDLAKLL 322
           + +++         ++ + L
Sbjct: 199 IKLAIDNK----DIEMLQAL 214

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 98.0 bits (245), Expect = 7e-24
 Identities = 14/120 (11%), Positives = 41/120 (34%), Gaps = 9/120 (7%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATP-LHYAVQV 243
             L             L+ +H  I      ++  LL    + +  +     P +  A+  
Sbjct: 147 YFLSEI-PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN 205

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
             ++ ++ L KY++++        +     +   + +IAK+++    +    +      +
Sbjct: 206 KDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 79.1 bits (196), Expect = 4e-17
 Identities = 17/113 (15%), Positives = 42/113 (37%), Gaps = 14/113 (12%)

Query: 186 LLDGGLDIDSVDKDGLT-ALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           LLD     ++ +       +  AI  K   ++  L +   N +       +     V + 
Sbjct: 180 LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLD 232

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIA-----IQSRNRDIAKVLLINGADK 292
             +  K++I+ +V+           +        I S+N+++ +++ +N   K
Sbjct: 233 DAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKEL-RLMYVNCVKK 284

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.2 bits (178), Expect = 1e-14
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 233 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 292
           G             + +K  +  + D   AD  G +  + AI   N  +   LL  GA K
Sbjct: 1   GMDLSRINT--WKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57

Query: 293 SRKTKDGKTAL 303
                + +  L
Sbjct: 58  --NLLENEFPL 66

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  129 bits (326), Expect = 4e-36
 Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 11/144 (7%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHV------KDGDGATPLHY 239
           LL  G D +  D  G T LH A      A +  L +    PH+       + +G T LH 
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

Query: 240 AVQVGAMQSVKLLIKYNVDVNVADN-EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKD 298
           A   G +  V+LL+    DVN  +   G T LH+A+  +N D+  +LL  GAD +R T  
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183

Query: 299 GKTALDMSLCYGRDFKSYDLAKLL 322
           G +   ++        S  + + L
Sbjct: 184 GYSPYQLTWGRP----STRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  128 bits (325), Expect = 7e-36
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 11/145 (7%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
            +      ++  +    T LH A+I  +  +   LL  G +P ++D  G TPLH A + G
Sbjct: 30  QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG 89

Query: 245 AMQSVKLLIKYNVD------VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK- 297
            + SV +L +          +   +  G T LH+A       I ++L+  GAD + +   
Sbjct: 90  CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPC 149

Query: 298 DGKTALDMSLCYGRDFKSYDLAKLL 322
           +G+TAL +++       + DL  LL
Sbjct: 150 NGRTALHLAVDLQ----NPDLVSLL 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  125 bits (316), Expect = 1e-34
 Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 1/119 (0%)

Query: 190 GLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDG-DGATPLHYAVQVGAMQS 248
              + + + +G T LH A I     ++  L+  GA+ + ++  +G T LH AV +     
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDL 166

Query: 249 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL 307
           V LL+K   DVN    +G++P  +     +  I + L     +  +   + +       
Sbjct: 167 VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDT 225

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  125 bits (316), Expect = 1e-34
 Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 14/137 (10%)

Query: 196 VDKDGLTALHKAII-GKKEA---VISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKL 251
           + +DG + LH AII  +K     VI  +    A  + ++    TPLH AV     +  + 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63

Query: 252 LIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR------KTKDGKTALDM 305
           L+    D  + D  G TPLH+A +        VL  +               +G T L +
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

Query: 306 SLCYGRDFKSYDLAKLL 322
           +  +G       + +LL
Sbjct: 124 ASIHG----YLGIVELL 136

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 92.2 bits (230), Expect = 3e-22
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 227 HVKDGDGATPLHYAVQVG----AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 282
                DG + LH A+        M+ ++ +      +N  +N   TPLH+A+ +   +IA
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 283 KVLLINGADKSRKTKDGKTAL 303
           + LL  G D   +   G T L
Sbjct: 62  EALLGAGCDPELRDFRGNTPL 82

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 88.8 bits (221), Expect = 5e-21
 Identities = 19/101 (18%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 183 MDMLLDGGLDIDSVDK-DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAV 241
           +++L+  G D+++ +  +G TALH A+  +   ++S LL+ GA+ +     G +P     
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 192

Query: 242 QVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 282
              + +  + L +  ++      E         +S   +  
Sbjct: 193 GRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  125 bits (317), Expect = 4e-36
 Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 2/108 (1%)

Query: 197 DKDGLTALHKA-IIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
            KDG T LH A   G  E  +  LL KGA+ + +  DG TPLH A + G  + VKLL+  
Sbjct: 6   SKDGNTPLHNAAKNGHAE-EVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
             DVN    +G TP H+A ++ + +I K+L   GAD + ++       
Sbjct: 65  GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 99.8 bits (250), Expect = 3e-26
 Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 6/100 (6%)

Query: 223 GANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 282
           G        DG TPLH A + G  + VK L+    DVN    +G TPLH+A ++ + +I 
Sbjct: 1   GHM--WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 283 KVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           K+LL  GAD + ++KDG T   ++   G     +++ KLL
Sbjct: 59  KLLLAKGADVNARSKDGNTPEHLAKKNG----HHEIVKLL 94

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 96.7 bits (242), Expect = 4e-25
 Identities = 33/88 (37%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKA-IIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
            LL  G D+++  KDG T LH A   G  E ++  LL KGA+ + +  DG TP H A + 
Sbjct: 27  KLLSKGADVNARSKDGNTPLHLAAKNGHAE-IVKLLLAKGADVNARSKDGNTPEHLAKKN 85

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLH 271
           G  + VKLL     DVN          H
Sbjct: 86  GHHEIVKLLDAKGADVNARSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 62.8 bits (154), Expect = 1e-12
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHY 239
           +LL  G D+++  KDG T  H A       ++  L  KGA+ + +    +   H+
Sbjct: 60  LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  128 bits (325), Expect = 4e-36
 Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 5/139 (3%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
             L     +    +     LH+A      + +   L      +  D  G+T L++A   G
Sbjct: 58  TGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG 117

Query: 245 AMQSVKLLI-KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
               V++L  + N+++N  +  G T LH A      DI ++LL  GA    +  + K A 
Sbjct: 118 HKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF 177

Query: 304 DMSLCYGRDFKSYDLAKLL 322
           DM+           L K  
Sbjct: 178 DMATNAA----CASLLKKK 192

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  121 bits (307), Expect = 2e-33
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 1/120 (0%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRK-GANPHVKDGDGATPLHYAVQV 243
             LD  + ++ +DK G TAL+ A  G  + ++  L  +     + ++  G T LH A   
Sbjct: 91  ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
           G    V+LL+      ++ + E      +A  +    + K      A ++    +     
Sbjct: 151 GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDD 210

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  120 bits (304), Expect = 5e-33
 Identities = 31/141 (21%), Positives = 50/141 (35%), Gaps = 12/141 (8%)

Query: 184 DMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLR-KGANPHVKDGDGATPLHYAVQ 242
           D L     DI  +     T   K                       +      PLH A +
Sbjct: 29  DELYIEEGDIIYITDMSDTNWWKG------TSKGRTGLIPSNYVAEQAESIDNPLHEAAK 82

Query: 243 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN-GADKSRKTKDGKT 301
            G +  ++  +   V VN  D  G T L+ A    ++DI ++L      + +++ K G T
Sbjct: 83  RGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDT 142

Query: 302 ALDMSLCYGRDFKSYDLAKLL 322
           AL  +   G      D+ +LL
Sbjct: 143 ALHAAAWKGY----ADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  104 bits (262), Expect = 7e-27
 Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 5/107 (4%)

Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
            K G   + +A+   +      L  +  +         T        G       LI  N
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKG----RTGLIPSN 64

Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
             V         PLH A +  N    +  L N    +   K G TAL
Sbjct: 65  -YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTAL 110

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 95.8 bits (239), Expect = 1e-23
 Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 1/90 (1%)

Query: 185 MLLD-GGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           ML     ++++  +K G TALH A       ++  LL KGA   +++ +       A   
Sbjct: 124 MLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNA 183

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIA 273
                +K     +    +++ E +     +
Sbjct: 184 ACASLLKKKQGTDAVRTLSNAEDYLDDEDS 213

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 66.9 bits (164), Expect = 4e-13
 Identities = 10/97 (10%), Positives = 22/97 (22%), Gaps = 9/97 (9%)

Query: 226 PHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
           P      G   +  A+     ++   L     D+    +   T              +  
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK-----GRTG 59

Query: 286 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           LI     + + +     L  +   G         +  
Sbjct: 60  LIPSNYVAEQAESIDNPLHEAAKRGNL----SWLREC 92

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 7/61 (11%), Positives = 17/61 (27%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           +LL  G   D  + +   A   A      +++       A   + + +       +    
Sbjct: 158 LLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217

Query: 245 A 245
            
Sbjct: 218 H 218

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  124 bits (315), Expect = 1e-35
 Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 6/135 (4%)

Query: 189 GGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQS 248
           G   I  +       L  A    +   +  LL  GA+P+  +  G  P+   +  G+ Q 
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQV 59

Query: 249 VKLLIKYNVDVNVADNEGWT-PLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL 307
            +LL+ +  + N AD    T P+H A +    D   VL   GA        G+  +D++ 
Sbjct: 60  AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119

Query: 308 CYGRDFKSYDLAKLL 322
             G      D+A+ L
Sbjct: 120 EQG----HRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  120 bits (304), Expect = 5e-34
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 2/108 (1%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGAT-PLHYAVQV 243
            LL+ G D +++++ G   +   ++G  + V   LL  GA P+  D    T P+H A + 
Sbjct: 30  QLLEAGADPNALNRFGRRPIQVMMMGSAQ-VAELLLLHGAEPNCADPATLTRPVHDAARE 88

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 291
           G + ++ +L +    ++V D  G  P+ +A +  +RDIA+ L     D
Sbjct: 89  GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  122 bits (308), Expect = 8e-35
 Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 2/110 (1%)

Query: 196 VDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIK 254
           +          A+  G  + V    + KG + +     G  PLHYA   G ++ ++ L+ 
Sbjct: 3   LGSMCDKEFMWALKNGDLDEV-KDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 255 YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
              D+N  D    TPL  A+   +    K+LL  GADK+ K  DG TA +
Sbjct: 62  KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  100 bits (252), Expect = 1e-26
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 2/99 (2%)

Query: 186 LLDGGLDIDSVDKDGLTALHKA-IIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
            +  G D++   + G   LH A   G+ E ++  LL KGA+ +  D    TPL  AV  G
Sbjct: 26  YVAKGEDVNRTLEGGRKPLHYAADCGQLE-ILEFLLLKGADINAPDKHHITPLLSAVYEG 84

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAK 283
            +  VKLL+    D  V   +G T          + + +
Sbjct: 85  HVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  122 bits (309), Expect = 9e-35
 Identities = 48/125 (38%), Positives = 74/125 (59%), Gaps = 6/125 (4%)

Query: 199 DGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNV 257
           D    L +A   G+ +  +  L+  GA+ + KD  G TPL+ A   G ++ V++L+K   
Sbjct: 13  DLGKKLLEAARAGQDD-EVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA 71

Query: 258 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYD 317
           DVN  D  G+TPLH+A    + +IA+VLL +GAD + + K GKTA D+S+  G    + D
Sbjct: 72  DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG----NED 127

Query: 318 LAKLL 322
           LA++L
Sbjct: 128 LAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  111 bits (280), Expect = 2e-30
 Identities = 37/103 (35%), Positives = 61/103 (59%), Gaps = 2/103 (1%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           +L+  G D+++ D+ GLT L+ A   G  E ++  LL+ GA+ +  D  G TPLH A  +
Sbjct: 32  ILMANGADVNAKDEYGLTPLYLATAHGHLE-IVEVLLKNGADVNAVDAIGFTPLHLAAFI 90

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
           G ++  ++L+K+  DVN  D  G T   I+I + N D+A++L 
Sbjct: 91  GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 74.0 bits (183), Expect = 1e-16
 Identities = 22/71 (30%), Positives = 34/71 (47%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           LL  G D+++VD  G T LH A       +   LL+ GA+ + +D  G T    ++  G 
Sbjct: 66  LLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN 125

Query: 246 MQSVKLLIKYN 256
               ++L K N
Sbjct: 126 EDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 55.9 bits (136), Expect = 5e-10
 Identities = 14/66 (21%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 258 DVNVAD-NEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSY 316
             +    ++    L  A ++   D  ++L+ NGAD + K + G T L ++  +G      
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG----HL 60

Query: 317 DLAKLL 322
           ++ ++L
Sbjct: 61  EIVEVL 66

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  121 bits (307), Expect = 2e-34
 Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 4/124 (3%)

Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
           +G T LH A       V+  LL  GA+ + KD +G TPLH A + G ++ VKLL++   D
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDL 318
           VN  D  G TPLH+A ++ + ++ K+LL  GAD + K K+G+T L ++   G      ++
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG----HLEV 116

Query: 319 AKLL 322
            KLL
Sbjct: 117 VKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  115 bits (290), Expect = 4e-32
 Identities = 44/106 (41%), Positives = 66/106 (62%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           +LL+ G D+++ DK+G T LH A       V+  LL  GA+ + KD +G TPLH A + G
Sbjct: 20  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
            ++ VKLL++   DVN  D  G TPLH+A ++ + ++ K+LL  GA
Sbjct: 80  HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  126 bits (319), Expect = 2e-34
 Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 11/148 (7%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           LL  G D     K+G T    A I     ++   L KGA+ +  D  G T    A   G 
Sbjct: 58  LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK 117

Query: 246 MQSVKLLIKYNVDVNVADN----------EGWTPLHIAIQSRNRDIAKVLLIN-GADKSR 294
           ++++K L K   +VN+              G T L  A +  + ++ K+LL   GAD + 
Sbjct: 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177

Query: 295 KTKDGKTALDMSLCYGRDFKSYDLAKLL 322
               G+ AL  +L    D     +  LL
Sbjct: 178 CDNMGRNALIHALLSSDDSDVEAITHLL 205

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  124 bits (313), Expect = 1e-33
 Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 11/129 (8%)

Query: 186 LLDGGLDIDSVDKD-GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           LL+GG +++  +++ G T LH A+   +E ++  LLR GA+P ++  +GATP   A   G
Sbjct: 24  LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD----------KSR 294
           +++ +KL +    DVN  D  G+T    A         K L   GA+          + R
Sbjct: 84  SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER 143

Query: 295 KTKDGKTAL 303
             K G TAL
Sbjct: 144 LRKGGATAL 152

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  121 bits (306), Expect = 1e-32
 Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGD-GATPLHYAVQVGAMQSVKLLIKY 255
             +    L KA+  +   ++  LL  GAN + ++ + G TPLH AVQ+     V+LL+++
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS 315
             D  +    G TP  +A  + +  + K+ L  GAD +     G TA   +  YG     
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG----K 117

Query: 316 YDLAKLL 322
               K L
Sbjct: 118 VKALKFL 124

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  121 bits (306), Expect = 1e-32
 Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 16/142 (11%)

Query: 190 GLDIDSVDKDGLTALHKAII-GKKEAV---ISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
             D + + K G TAL  A   G  E +   +      GA+ +  D  G   L +A+    
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLSSD 194

Query: 246 MQS----VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN-GADKSRKTKDGK 300
                    LL+ +  DVNV    G TPL +A++ ++  + + LL     + +    DGK
Sbjct: 195 DSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK 254

Query: 301 TALDMSLCYGRDFKSYDLAKLL 322
           TAL +++          +A+LL
Sbjct: 255 TALLLAVELK----LKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  119 bits (301), Expect = 7e-32
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 19/152 (12%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGD----------GAT 235
            L  G D++  D  G TA  +A +  K   +  L ++GAN +++             GAT
Sbjct: 91  FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150

Query: 236 PLHYAVQVGAMQSVKLLI-KYNVDVNVADNEGWTPLHIAIQSRNRD----IAKVLLINGA 290
            L  A + G ++ +K+L+ +   DVN  DN G   L  A+ S +      I  +LL +GA
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

Query: 291 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           D + + + GKT L +++          L + L
Sbjct: 211 DVNVRGERGKTPLILAVEKK----HLGLVQRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  118 bits (298), Expect = 2e-31
 Identities = 36/117 (30%), Positives = 63/117 (53%), Gaps = 6/117 (5%)

Query: 185 MLLD-GGLDIDSVDKDGLTALHKAI----IGKKEAVISHLLRKGANPHVKDGDGATPLHY 239
           +LLD  G D+++ D  G  AL  A+        EA+   LL  GA+ +V+   G TPL  
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL 225

Query: 240 AVQVGAMQSVKLLI-KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRK 295
           AV+   +  V+ L+ + ++++N  D++G T L +A++ + + IA++L   GA     
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 79.8 bits (198), Expect = 2e-17
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLL-RKGANPHVKDGDGATPLHYAVQVG 244
           LLD G D++   + G T L  A+  K   ++  LL ++    +  D DG T L  AV++ 
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264

Query: 245 AMQSVKLLIKYNVDVNVADN 264
             +  +LL K     +  D 
Sbjct: 265 LKKIAELLCKRGASTDCGDL 284

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKD-GKTALDMSLCYGRDFKSYDLAK 320
           A  E    L  A+Q+ + D+ + LL  GA+ + + ++ G T L  ++         D+ +
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMS----REDIVE 56

Query: 321 LL 322
           LL
Sbjct: 57  LL 58

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  124 bits (313), Expect = 2e-34
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 3/140 (2%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           L D    +D VD +G T L+ A+      +   L+ +GA+ ++++    +P  YA   G 
Sbjct: 25  LQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGR 84

Query: 246 MQSVKLLIKYN-VDVNVADNEGWTPLHIAIQSRNRDIAKVLLING-ADKSRKTKDGKTAL 303
            + +  ++K+   D+N  +  G   L  A +  + D  K+LL +G  D   +   G TAL
Sbjct: 85  TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTAL 144

Query: 304 DMSLCYGRDFKSY-DLAKLL 322
             ++      + Y D+ KLL
Sbjct: 145 IEAVGLREGNQLYQDIVKLL 164

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  121 bits (305), Expect = 2e-33
 Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 11/144 (7%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGA-NPHVKDGDGATPLHYAVQVG 244
           L+D G DI+  +    +    A    +  +++++L+    + +  +  G   L  A + G
Sbjct: 58  LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG 117

Query: 245 AMQSVKLLIKY-NVDVNVADNEGWTPLHIAIQSRNR-----DIAKVLLINGADKSRKTKD 298
            + +VKLL++    D++  ++ G+T L  A+  R       DI K+L+ NGAD+S K   
Sbjct: 118 HIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNS 177

Query: 299 GKTALDMSLCYGRDFKSYDLAKLL 322
           G+TA+D +   G      +++K+L
Sbjct: 178 GRTAMDYANQKG----YTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  117 bits (296), Expect = 5e-32
 Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
             +    L  A     + V   L          D +G TPL+ AV    ++  K LI   
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA-DKSRKTKDGKTALDMSLCYGRDFKS 315
            D+N+ ++   +P   A      +I   +L +   D ++  + G  AL  +   G     
Sbjct: 63  ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG----H 118

Query: 316 YDLAKLL 322
            D  KLL
Sbjct: 119 IDNVKLL 125

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  104 bits (263), Expect = 3e-27
 Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 7/109 (6%)

Query: 185 MLLD-GGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKG-ANPHVKDGDGATPLHYAVQ 242
            +L     D++  ++ G  AL  A        +  LL  G  +   ++  G T L  AV 
Sbjct: 90  YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG 149

Query: 243 VGAMQS-----VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
           +          VKLL++   D ++ DN G T +  A Q    +I+K+L 
Sbjct: 150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 95.6 bits (239), Expect = 8e-24
 Identities = 21/76 (27%), Positives = 36/76 (47%)

Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI 287
           +K  +    L  A Q    +  ++L      V+  D EG TPL+IA+ + + +IAK L+ 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID 60

Query: 288 NGADKSRKTKDGKTAL 303
            GAD + +     +  
Sbjct: 61  RGADINLQNSISDSPY 76

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 72.9 bits (180), Expect = 1e-15
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 8/79 (10%)

Query: 185 MLLD-GGLDIDSVDKDGLTALHKAII------GKKEAVISHLLRKGANPHVKDGDGATPL 237
           +LL+ G  DID  +  G TAL +A+         ++ ++  L+  GA+  +KD  G T +
Sbjct: 124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD-IVKLLMENGADQSIKDNSGRTAM 182

Query: 238 HYAVQVGAMQSVKLLIKYN 256
            YA Q G  +  K+L +YN
Sbjct: 183 DYANQKGYTEISKILAQYN 201

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  123 bits (312), Expect = 5e-34
 Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 6/139 (4%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
            +  G+ +   +   L  L  + + G+ + ++  ++ +  +P + + +G T LH AV  G
Sbjct: 24  RIAHGMRVK-FNPLPLALLLDSSLEGEFD-LVQRIIYEVDDPSLPNDEGITALHNAVCAG 81

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT-KDGKTAL 303
             + VK L+++ V+VN AD++GWTPLH A    N  + K L+ +GA     T  D +TA 
Sbjct: 82  HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA 141

Query: 304 DMSLCYGRDFKSYDLAKLL 322
           D   C   +      ++ L
Sbjct: 142 D--KCEEMEEGYTQCSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  119 bits (301), Expect = 2e-32
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 5/126 (3%)

Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
           +  G  +L            S  +  G             L  +   G    V+ +I   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSY 316
            D ++ ++EG T LH A+ + + +I K L+  G + +    DG T L  +        + 
Sbjct: 61  DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN----NV 116

Query: 317 DLAKLL 322
            + K L
Sbjct: 117 QVCKFL 122

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 93.4 bits (233), Expect = 1e-22
 Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 10/136 (7%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVK---DGDGATPLH 238
           +  L+  G+++++ D DG T LH A      + V   L+  GA        D   A    
Sbjct: 86  VKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ-VCKFLVESGAAVFAMTYSDMQTAADKC 144

Query: 239 YAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS--RKT 296
             ++ G  Q  + L      + + +      L       +    ++ +  G   +   + 
Sbjct: 145 EEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQND---DELPMKEGDCMTIIHRE 201

Query: 297 KDGKTALDMSLCYGRD 312
            + +     +    ++
Sbjct: 202 DEDEIEWWWARLNDKE 217

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 14/121 (11%), Positives = 33/121 (27%), Gaps = 27/121 (22%)

Query: 186 LLDGGLDIDSVDKDGL---TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
           L++ G  + ++    +       + +          L        + +      L     
Sbjct: 122 LVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDY-- 179

Query: 243 VGAMQSVKLLIKYNVDVNV----------------ADNEGWTPLHIA-----IQSRNRDI 281
                  +L +K    + +                 D EG+ P ++      I+ R R +
Sbjct: 180 -EPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIKPRQRSL 238

Query: 282 A 282
           A
Sbjct: 239 A 239

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  125 bits (317), Expect = 1e-33
 Identities = 16/134 (11%), Positives = 43/134 (32%), Gaps = 13/134 (9%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGAN-------------PHVKDGD 232
            ++ G+D++  D +    L+ ++      +   LL+K                       
Sbjct: 230 FVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVV 289

Query: 233 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 292
               +  A      + ++LL +   +V  + N G        +     + ++ L   A  
Sbjct: 290 WLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPV 349

Query: 293 SRKTKDGKTALDMS 306
             +++    +  +S
Sbjct: 350 RTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  124 bits (313), Expect = 5e-33
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 17/146 (11%)

Query: 190 GLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSV 249
            L +D  +K G + LH AI+   E V    +  G + +++D +   PL+ +V+   +   
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLT 260

Query: 250 KLLI-------------KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT 296
           K L+                  V          +  A     +++ ++L     +  R  
Sbjct: 261 KELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSL 320

Query: 297 KDGKTALDMSLCYGRDFKSYDLAKLL 322
             G                  + ++ 
Sbjct: 321 NTGAGGAVKRKKKAA----PAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  121 bits (306), Expect = 5e-32
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 8/126 (6%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLL-----RKGANPHVKDGDGATPLHYA 240
           L+  G    + DK   T L +A+  +    +  ++     +        +  G + LH+A
Sbjct: 159 LVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWA 218

Query: 241 VQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD---KSRKTK 297
           + +         ++  +DVN+ DNE   PL++++++    + K LL        ++    
Sbjct: 219 ILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278

Query: 298 DGKTAL 303
           +G T L
Sbjct: 279 NGTTVL 284

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  119 bits (300), Expect = 4e-31
 Identities = 30/159 (18%), Positives = 61/159 (38%), Gaps = 25/159 (15%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           M     L+    D + +  +H A    +   +  L+  G +P +++  G T LH A + G
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFG 64

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR---------- 294
            + + K L       +     G  P+H+A+ +   D+   L+    ++ +          
Sbjct: 65  CVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECD 122

Query: 295 -----------KTKDGKTALDMSLCYGRDFKSYDLAKLL 322
                      K   G+TAL   +  G ++   ++ K+L
Sbjct: 123 EREVNEIGSHVKHCKGQTALHWCVGLGPEYL--EMIKIL 159

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  114 bits (288), Expect = 2e-29
 Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 34/165 (20%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGAN-------------------- 225
           L   G         G   +H A++  K  ++  L+                         
Sbjct: 72  LASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEI 129

Query: 226 -PHVKDGDGATPLHYAVQVGA--MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 282
             HVK   G T LH+ V +G   ++ +K+L++        D    TPL  A++ RNR+  
Sbjct: 130 GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREAL 189

Query: 283 KVLL-----INGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
            +++      +        K G + L  ++         D+A   
Sbjct: 190 DLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN----WEDVAMRF 230

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 73.0 bits (180), Expect = 1e-14
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 250 KLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCY 309
            +     ++   +D+E    +H+A +    D  + L+  G   + + + G TAL ++  +
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63

Query: 310 GRDFKSYDLAKLL 322
           G      D AK L
Sbjct: 64  G----CVDTAKYL 72

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  122 bits (308), Expect = 1e-33
 Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 8/142 (5%)

Query: 186 LLDGGLDIDSVDK---DGLTALHKA-IIGKKEAVISHLLRKGANPHVKDGDGATPLHYAV 241
           +L          +   + L  L  A + G+ E V+   +++  +P   + +G T LH A+
Sbjct: 4   VLRKAGSPRKARRARLNPLVLLLDAALTGELE-VVQQAVKEMNDPSQPNEEGITALHNAI 62

Query: 242 QVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT-KDGK 300
                  V  LI    +VN  D+ GWTPLH A    +  I   L+ +GA     T  DG 
Sbjct: 63  CGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGA 122

Query: 301 TALDMSLCYGRDFKSYDLAKLL 322
           TA +    Y   +   D A  L
Sbjct: 123 TAFEKCDPYREGYA--DCATYL 142

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  103 bits (260), Expect = 1e-26
 Identities = 24/135 (17%), Positives = 43/135 (31%), Gaps = 10/135 (7%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDG-DGATPLHYAV 241
           +D L+  G +++S D  G T LH A       +   L++ GA        DGAT      
Sbjct: 70  VDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD 129

Query: 242 QV--GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI---NGADKSRKT 296
               G       L      + + ++     L       + +    L           R+ 
Sbjct: 130 PYREGYADCATYLADVEQSMGLMNSGAVYALWDY----SAEFGDELSFREGESVTVLRRD 185

Query: 297 KDGKTALDMSLCYGR 311
              +T    +  +G+
Sbjct: 186 GPEETDWWWAALHGQ 200

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 65.7 bits (161), Expect = 8e-13
 Identities = 12/77 (15%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 249 VKLLIKYNVDVNVADNE---GWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
           ++ +++       A          L  A  +   ++ +  +    D S+  ++G TAL  
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 306 SLCYGRDFKSYDLAKLL 322
           ++C      +Y +   L
Sbjct: 61  AICGA----NYSIVDFL 73

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  121 bits (307), Expect = 3e-33
 Identities = 33/159 (20%), Positives = 54/159 (33%), Gaps = 26/159 (16%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAII-GKKEAV---ISHLLRKGAN-----PHVKDGDGATP 236
           L   G ++      G TALH A +    EA    +                 +  +G T 
Sbjct: 23  LKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA----APELVFEPMTSELYEGQTA 78

Query: 237 LHYAVQVGAMQSVKLLIKYNVDVNVADN-------------EGWTPLHIAIQSRNRDIAK 283
           LH AV    +  V+ L+     V+                  G  PL  A    + +I +
Sbjct: 79  LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVR 138

Query: 284 VLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           +L+ +GAD   +   G T L + +       +  +  LL
Sbjct: 139 LLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLL 177

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  113 bits (286), Expect = 3e-30
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 32/165 (19%)

Query: 186 LLDGGLDIDSV-----DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGD-------- 232
           L++   ++          +G TALH A+I +   ++  LL +GA+   +           
Sbjct: 56  LMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPH 115

Query: 233 -----GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA----K 283
                G  PL +A  VG+ + V+LLI++  D+   D+ G T LHI I   N+  A     
Sbjct: 116 NLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYN 175

Query: 284 VLLINGADKSRKT------KDGKTALDMSLCYGRDFKSYDLAKLL 322
           +LL        K+        G T   ++   G    +  + + L
Sbjct: 176 LLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG----NIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  111 bits (279), Expect = 3e-29
 Identities = 32/142 (22%), Positives = 57/142 (40%), Gaps = 23/142 (16%)

Query: 200 GLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
             + L  A      +A+   L  +G   H +   G T LH A     +++  +L++   +
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 259 V-----NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKD-------------GK 300
           +          EG T LHIA+ ++N ++ + LL  GA  S +                G+
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGE 122

Query: 301 TALDMSLCYGRDFKSYDLAKLL 322
             L  + C G    S ++ +LL
Sbjct: 123 HPLSFAACVG----SEEIVRLL 140

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  118 bits (299), Expect = 9e-33
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
                  D   V  +  T    A     E  +S LL +  +    D +G T L +   +G
Sbjct: 32  PSSYIAAD---VVSEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLG 87

Query: 245 AMQSVKLLIKYNVDVNVADNE-GWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
           + + V+LL +   D++  D   G T LH+A      ++ + L+  GAD   + + G TAL
Sbjct: 88  SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 147

Query: 304 DMSLCYGRDFKSYDLAKLL 322
           +++    +           
Sbjct: 148 ELAREILKT----TPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  114 bits (288), Expect = 5e-31
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 2/112 (1%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDG-DGATPLHYAVQV 243
            LL+   D+D+VD++G TAL        +  +  L   GA+   +D   G T LH A   
Sbjct: 62  QLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 120

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRK 295
              + V+ L++   D+ V D  G T L +A +          +  G     +
Sbjct: 121 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE 172

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  101 bits (255), Expect = 2e-26
 Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 9/128 (7%)

Query: 196 VDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
              +G                       A+      +  TP   A +    Q++  L++ 
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLLE- 65

Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRK-TKDGKTALDMSLCYGRDFK 314
           + DV+  D  G T L       +    ++L   GAD   +  + G TAL M+  Y R   
Sbjct: 66  DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP-- 123

Query: 315 SYDLAKLL 322
             ++ + L
Sbjct: 124 --EVVEAL 129

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 81.8 bits (203), Expect = 8e-19
 Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 8/101 (7%)

Query: 222 KGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI 281
                    G+GA       + G   S         DV    +E  TP   A +  +   
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQA 59

Query: 282 AKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
               L+   D     ++G+TAL      G D       +LL
Sbjct: 60  LS-QLLEDRDVDAVDENGRTALLFVAGLGSD----KCVRLL 95

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 77.2 bits (191), Expect = 3e-17
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 185 MLLDGGLDIDSVD-KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           +L + G D+D  D + GLTALH A    +  V+  L+  GA+  V+D  G T L  A ++
Sbjct: 94  LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 153

Query: 244 GAMQSVKLLIKYNVDVNVAD 263
                    +++   + +  
Sbjct: 154 LKTTPKGNPMQFGRRIGLEK 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  118 bits (297), Expect = 2e-32
 Identities = 23/175 (13%), Positives = 52/175 (29%), Gaps = 20/175 (11%)

Query: 137 LKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSV 196
            ++  +L E    +  +   +  L       +  L+      + +    L++ G DI S 
Sbjct: 19  YEDFLELFEKGYEDKESVLKSNIL-------YDVLRNNNDEARYKISMFLINKGADIKSR 71

Query: 197 DKDGLTALHKAI------IGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVK 250
            K+G T            I     +    L KGA+           +   +    +   +
Sbjct: 72  TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENE 131

Query: 251 -------LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKD 298
                  +  +  + + + D  G T L    + +     K++       + K   
Sbjct: 132 MIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  111 bits (280), Expect = 6e-30
 Identities = 25/173 (14%), Positives = 52/173 (30%), Gaps = 22/173 (12%)

Query: 167 KWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDG----LTALHKAIIGKKEAVISHLLRK 222
           ++R +    +         L + G   D             L       +  +   L+ K
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKG-YEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 223 GANPHVKDGDGATPLHYAVQ------VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 276
           GA+   +  +G T      Q       G  +  K+ ++   D+          +   I +
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124

Query: 277 RNRDIAKVLLI-------NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
              D  +++ +       +G     K K G TAL+      +        K++
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQK----PIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 94.0 bits (234), Expect = 2e-23
 Identities = 23/138 (16%), Positives = 41/138 (29%), Gaps = 12/138 (8%)

Query: 198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQS----VKLLI 253
                 +  A +         L  KG     +    +  L+  ++    ++       LI
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYE-DKESVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 254 KYNVDVNVADNEGWTPLHIAIQSRNRDI------AKVLLINGADKSRKTKDGKTALDMSL 307
               D+     EG T      Q    DI       K+ L  GAD +   K  K  +    
Sbjct: 63  NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVV-FKN 121

Query: 308 CYGRDFKSYDLAKLLKIL 325
            +       ++  L K++
Sbjct: 122 IFNYFVDENEMIPLYKLI 139

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  121 bits (307), Expect = 5e-32
 Identities = 35/145 (24%), Positives = 59/145 (40%), Gaps = 16/145 (11%)

Query: 190 GLDIDSVDKDGLTALHKAII-GKKEAV--ISHLLRKGAN--------PHVKDGDGATPLH 238
             DI+ +D++G+TAL        ++ V     L+ KGA            +   G T LH
Sbjct: 225 KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH 284

Query: 239 YAVQVGAMQSVKLLIKYN-VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK 297
           YA QV  M  VK L+     + +  D +G TP+ +A Q    ++   L+  GA       
Sbjct: 285 YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA 344

Query: 298 DGKTALDMSLCYGRDFKSYDLAKLL 322
              TA  ++         +++  + 
Sbjct: 345 TDHTARQLAQANN----HHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  121 bits (305), Expect = 8e-32
 Identities = 30/132 (22%), Positives = 49/132 (37%), Gaps = 12/132 (9%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAII-GKKEAV---ISH----LLRKGANPHVKDGDGA 234
            + +    ++I    +   T LH        E     I H     +  GA+ +  D D  
Sbjct: 109 TEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN 167

Query: 235 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL---INGAD 291
           TPL  AV     + V  L+K   D  + +    + LH A  +R+  +   +L       D
Sbjct: 168 TPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD 227

Query: 292 KSRKTKDGKTAL 303
                ++G TAL
Sbjct: 228 IEELDRNGMTAL 239

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  120 bits (302), Expect = 2e-31
 Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 21/153 (13%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAII-GKKEAV---ISHLLRKGANPHVKDGDGATPLHYAV 241
           L+  G D    +K   +ALH+A        +   ++   +   +    D +G T L    
Sbjct: 185 LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNST-KLKGDIEELDRNGMTALMIVA 243

Query: 242 QVG---AMQSVKLLIKYNVDVNVA--------DNEGWTPLHIAIQSRNRDIAKVLLI-NG 289
                  + S KLL++    V+            +G T LH A Q  N  I K L+   G
Sbjct: 244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303

Query: 290 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           ++K ++ +DGKT + ++   G      ++   L
Sbjct: 304 SNKDKQDEDGKTPIMLAAQEG----RIEVVMYL 332

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  119 bits (300), Expect = 4e-31
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 14/147 (9%)

Query: 184 DMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           D            + +    LH    G    +   + R+  N  +      T LH+    
Sbjct: 78  DFNHTNLQIPTEPEPESPIKLHTEAAGSYA-ITEPITRESVNI-IDPRHNRTVLHWIASN 135

Query: 244 GAMQSVKLLIKYNV--------DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRK 295
            + +  + LI +          DVN  D +  TPL +A+ +R R +   L+  GAD +  
Sbjct: 136 SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY 195

Query: 296 TKDGKTALDMSLCYGRDFKSYDLAKLL 322
            K  ++AL  +         + +   +
Sbjct: 196 NKSERSALHQAAANR----DFGMMVYM 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  112 bits (283), Expect = 1e-28
 Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 184 DMLLDGGLDIDSVDKDGLTALHKA-IIGKKEAV---ISHLLRKGANPHVKDGDGATPLHY 239
            +  DG    DS    G TALH A  +     V   +     KG+N   +D DG TP+  
Sbjct: 263 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE---KGSNKDKQDEDGKTPIML 319

Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 292
           A Q G ++ V  LI+    V   D    T   +A  + + +I  +      ++
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 85.0 bits (211), Expect = 9e-19
 Identities = 11/116 (9%), Positives = 23/116 (19%), Gaps = 11/116 (9%)

Query: 188 DGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQ 247
           +              +L +A         S+        +        P       G   
Sbjct: 25  EKNRKNHQSITSSQHSLLEA---------SYDGYIKRQRNELQHYSLYPNPQGYGNGNDF 75

Query: 248 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
                          + E    LH      +  I + +     +     +  +T L
Sbjct: 76  LGDFNHTNLQIPTEPEPESPIKLHTEAAG-SYAITEPITRESVNIIDP-RHNRTVL 129

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 13/102 (12%), Positives = 24/102 (23%), Gaps = 14/102 (13%)

Query: 221 RKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRD 280
            K    H         L  A   G ++  +         N   +    P      + N  
Sbjct: 25  EKNRKNHQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGNDF 75

Query: 281 IAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           +      N    +    +    L      G    SY + + +
Sbjct: 76  LGDFNHTNLQIPTEPEPESPIKLHTE-AAG----SYAITEPI 112

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  118 bits (297), Expect = 9e-32
 Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 9/139 (6%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
                  D   V  +  T    A     E  +S LL +  +    D +G T L +   +G
Sbjct: 33  PSSYIAAD---VVSEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLG 88

Query: 245 AMQSVKLLIKYNVDVNVADNE-GWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
           + + V+LL +   D++  D   G T LH+A      ++ + L+  GAD   + + G TAL
Sbjct: 89  SDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL 148

Query: 304 DMSLCYGRDFKSYDLAKLL 322
           +++    +           
Sbjct: 149 ELAREILKT----TPKGNP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  113 bits (284), Expect = 7e-30
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 2/112 (1%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDG-DGATPLHYAVQV 243
            LL+   D+D+VD++G TAL        +  +  L   GA+   +D   G T LH A   
Sbjct: 63  QLLEDR-DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRK 295
              + V+ L++   D+ V D  G T L +A +          +  G     +
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE 173

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  104 bits (263), Expect = 8e-27
 Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 25/142 (17%)

Query: 185 MLLDGGLDIDSVD-KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           +L + G D+D  D + GLTALH A    +  V+  L+  GA+  V+D  G T L  A ++
Sbjct: 95  LLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI 154

Query: 244 GAMQSVKLLIKY----------------------NVDVNVADNEGWTPLHIAIQSRNRDI 281
                    +++                        ++     +G    ++       D 
Sbjct: 155 LKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDC 214

Query: 282 AKVLLINGADKSRKTKDGKTAL 303
             V  ++ A+     KD +  L
Sbjct: 215 EWVKGVHVAED--VAKDYEDGL 234

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 97.7 bits (244), Expect = 4e-24
 Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 9/127 (7%)

Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN 256
             +G                       A+      +  TP   A +    Q++  L++ +
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQALSQLLE-D 67

Query: 257 VDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRK-TKDGKTALDMSLCYGRDFKS 315
            DV+  D  G T L       +    ++L   GAD   +  + G TAL M+  Y      
Sbjct: 68  RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV----R 123

Query: 316 YDLAKLL 322
            ++ + L
Sbjct: 124 PEVVEAL 130

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 77.3 bits (191), Expect = 9e-17
 Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 8/94 (8%)

Query: 229 KDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN 288
             G+GA       + G   S         DV    +E  TP   A +  +       L+ 
Sbjct: 11  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKADEQALS-QLLE 66

Query: 289 GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
             D     ++G+TAL      G    S    +LL
Sbjct: 67  DRDVDAVDENGRTALLFVAGLG----SDKCVRLL 96

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 9/55 (16%), Positives = 12/55 (21%), Gaps = 2/55 (3%)

Query: 190 GLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
             +I      G    +                  A    KD +    L YAV   
Sbjct: 189 VDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYE--DGLEYAVAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 6/44 (13%), Positives = 11/44 (25%), Gaps = 3/44 (6%)

Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
           +    EG     I  +  +           AD      + +T  
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPW 49

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  114 bits (287), Expect = 2e-30
 Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 2/128 (1%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
            +L         D+D  TALH A   G  E ++  LL+ G   + KD  G +PLH A   
Sbjct: 25  RILADKSLATRTDQDSRTALHWACSAGHTE-IVEFLLQLGVPVNDKDDAGWSPLHIAASA 83

Query: 244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTAL 303
           G  + VK L+     VN  +  G TPLH A      +IA +LL  GA+   K     TA+
Sbjct: 84  GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAM 143

Query: 304 DMSLCYGR 311
             +   G 
Sbjct: 144 HRAAAKGN 151

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  111 bits (280), Expect = 2e-29
 Identities = 34/113 (30%), Positives = 54/113 (47%)

Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
             +   + A  GK + +   +L   +     D D  T LH+A   G  + V+ L++  V 
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
           VN  D+ GW+PLHIA  +   +I K LL+ GA  +   ++G T L  +    R
Sbjct: 66  VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  108 bits (272), Expect = 2e-28
 Identities = 33/126 (26%), Positives = 59/126 (46%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA 245
           LL  G+ ++  D  G + LH A     + ++  LL KGA+ +  + +G TPLHYA     
Sbjct: 59  LLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR 118

Query: 246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
            +   +L++   + +  D+   T +H A    N  +  +LL   A  + +  +G T L +
Sbjct: 119 HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHL 178

Query: 306 SLCYGR 311
           +    R
Sbjct: 179 ACDEER 184

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  101 bits (254), Expect = 9e-26
 Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 6/140 (4%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
           +  LL  G  +++V+++G T LH A    +  +   LL  GANP  KD   AT +H A  
Sbjct: 89  VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148

Query: 243 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTA 302
            G ++ V +L+ Y    N+ D EG TPLH+A      + AK L+  GA    + K+ KT 
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTP 208

Query: 303 LDMSLCYGRDFKSYDLAKLL 322
           L ++           L    
Sbjct: 209 LQVAK------GGLGLILKR 222

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 96.5 bits (240), Expect = 1e-23
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 2/133 (1%)

Query: 159 NLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISH 218
           ++  ++     PL       +     MLL+GG + D+ D    TA+H+A       ++  
Sbjct: 98  HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157

Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN 278
           LL   A+ +++D +G TPLH A     ++  K L+     + + + E  TPL +A     
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGG 215

Query: 279 RDIAKVLLINGAD 291
             +    L  G +
Sbjct: 216 LGLILKRLAEGEE 228

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 2/103 (1%)

Query: 159 NLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISH 218
           N           +        ++ + +LL      +  D +G T LH A   ++      
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190

Query: 219 LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
           L+ +GA+ ++++ +  TPL  A   G +  +   +    + ++
Sbjct: 191 LVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  103 bits (260), Expect = 5e-28
 Identities = 38/92 (41%), Positives = 55/92 (59%)

Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
           +G T LH A       V+  LL  GA+ + KD +G TPLH A + G ++ VKLL++   D
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 259 VNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
           VN  D  G TPLH+A ++ + ++ K+LL  GA
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 92.4 bits (231), Expect = 9e-24
 Identities = 36/91 (39%), Positives = 56/91 (61%), Gaps = 4/91 (4%)

Query: 232 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 291
           +G TPLH A + G ++ VKLL++   DVN  D  G TPLH+A ++ + ++ K+LL  GAD
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 292 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
            + K K+G+T L ++   G      ++ KLL
Sbjct: 61  VNAKDKNGRTPLHLAARNG----HLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 72.0 bits (178), Expect = 3e-16
 Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKA-IIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           +LL+ G D+++ DK+G T LH A   G  E V+  LL  GA+ + KD +G TPLH A + 
Sbjct: 20  LLLEAGADVNAKDKNGRTPLHLAARNGHLE-VVKLLLEAGADVNAKDKNGRTPLHLAARN 78

Query: 244 GAMQSVKLLIKY 255
           G ++ VKLL++ 
Sbjct: 79  GHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGA 224
           +LL+ G D+++ DK+G T LH A       V+  LL  GA
Sbjct: 53  LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 98.4 bits (246), Expect = 7e-26
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 8/114 (7%)

Query: 210 GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTP 269
                  S L+ +G++      D    L  A + G    V++L+    DV   D  G TP
Sbjct: 5   HHHH-HSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTP 60

Query: 270 LHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK 323
           LH+A ++ + ++ K+LL  GAD   + K GKTA D+S+  G +    DLA++L+
Sbjct: 61  LHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNE----DLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 89.2 bits (222), Expect = 2e-22
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 3/101 (2%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
            L+  G  +     D    L +A    ++  +  L+  GA+   KD +G+TPLH A + G
Sbjct: 12  GLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG 68

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
            ++ VKLL++   DV   D  G T   I+I + N D+A++L
Sbjct: 69  HLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 67.6 bits (166), Expect = 2e-14
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
                       L+     +    ++    L  A ++   D  ++L+ NGAD + K K+G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 300 KTAL 303
            T L
Sbjct: 58  STPL 61

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 98.3 bits (245), Expect = 3e-24
 Identities = 35/164 (21%), Positives = 54/164 (32%), Gaps = 37/164 (22%)

Query: 192 DIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKD--------------GDGATPL 237
               V   G TALH AI  + +  +  L+ KGA+ H +                 G  PL
Sbjct: 85  PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPL 144

Query: 238 HYAVQVGAMQSVKLLIK---YNVDVNVADNEGWTPLHIAIQSRN---------RDIAKVL 285
             A        V  L +      D+   D+ G T LH  +   +           +  +L
Sbjct: 145 SLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLL 204

Query: 286 LINGADKSRKT-------KDGKTALDMSLCYGRDFKSYDLAKLL 322
           LI  A     T        DG + L M+   G+      + + +
Sbjct: 205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI----GIFQHI 244

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 94.1 bits (234), Expect = 1e-22
 Identities = 36/164 (21%), Positives = 58/164 (35%), Gaps = 35/164 (21%)

Query: 186 LLDGGLDIDSVD----KDGLTALHKAII----GKKEAVISHL--------LRKGANPHVK 229
           LL     +   +      G T L KA++    G+ + +   L        +R+  N   +
Sbjct: 28  LLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87

Query: 230 DGD--GATPLHYAVQVGAMQSVKLLIKYNVDVNVADN--------------EGWTPLHIA 273
           D    G T LH A++      V+LL++   DV+                   G  PL +A
Sbjct: 88  DVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA 147

Query: 274 IQSRNRDIAKVLLING---ADKSRKTKDGKTALDMSLCYGRDFK 314
             +    I   L  NG   AD  R+   G T L   +    + +
Sbjct: 148 ACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTR 191

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 82.5 bits (204), Expect = 2e-18
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 33/140 (23%)

Query: 185 MLLDGGLDIDSVDK--------------DGLTALHKAIIGKKEAVISHLLRKG---ANPH 227
           +L++ G D+ +  +               G   L  A    +  ++ +L   G   A+  
Sbjct: 111 LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLR 170

Query: 228 VKDGDGATPLHYAVQVG---------AMQSVKLLIKYNVDVN-------VADNEGWTPLH 271
            +D  G T LH  V +            +   LL+     +        + +N+G +PL 
Sbjct: 171 RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLM 230

Query: 272 IAIQSRNRDIAKVLLINGAD 291
           +A ++    I + ++     
Sbjct: 231 MAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 81.4 bits (201), Expect = 4e-18
 Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 36/154 (23%)

Query: 201 LTALHKAIIGKKEAVISHLLRKGANPHVKDG----DGATPLHYAV---QVGAMQSVKLLI 253
              + +      E ++S LL        ++      G T L  A+     G   ++ +L+
Sbjct: 10  FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILL 69

Query: 254 KY-----------NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK----- 297
                        N         G T LHIAI+ R +   ++L+  GAD   + +     
Sbjct: 70  DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQ 129

Query: 298 ---------DGKTALDMSLCYGRDFKSYDLAKLL 322
                     G+  L ++ C         +   L
Sbjct: 130 PKDEGGYFYFGELPLSLAACTN----QPHIVHYL 159

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 60.9 bits (148), Expect = 7e-11
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 19/100 (19%)

Query: 184 DMLLDGGL---DIDSVDKDGLTALHKAIIGKKE---------AVISHLLRKGANPH---- 227
             L + G    D+   D  G T LH  +               +   LL K A       
Sbjct: 157 HYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN 216

Query: 228 ---VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN 264
              + + DG +PL  A + G +   + +I+  +    A +
Sbjct: 217 LEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 26/110 (23%)

Query: 235 TPLHYAVQVGAMQS----VKLLIKYNVDVNVAD----NEGWTPLHIAIQSRNR---DIAK 283
             L   V  G+       +  L+ +   +   +    + G T L  A+ + +    D   
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 284 VLLINGADKSR-----------KTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           +LL                       G+TAL +++            +LL
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERR----CKHYVELL 112

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 98.3 bits (245), Expect = 4e-24
 Identities = 41/251 (16%), Positives = 75/251 (29%), Gaps = 65/251 (25%)

Query: 119 AAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSM 178
           A A  +         E LL  +++  +        +          T     L    L++
Sbjct: 20  AVAQSNCQEL-----ESLLPFLQRSKK--------RLTDSEFKDPET-GKTCLLKAMLNL 65

Query: 179 QIRYMD---MLLDGGLDIDSV-----------DKDGLTALHKAIIGKKEAVISHLLRKGA 224
                D   +LLD     DS+              G TALH AI  +   +++ L+  GA
Sbjct: 66  HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125

Query: 225 NPHVKDGD--------------GATPLHYAVQVGAMQSVKLLIK---YNVDVNVADNEGW 267
           +                     G  PL  A     +  VK L++      D++  D+ G 
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN 185

Query: 268 TPLHIAIQSRNRDIAKVLLI----------------NGADKSRKTKDGKTALDMSLCYGR 311
           T LH  ++  +  +     +                    +    + G T L ++   G+
Sbjct: 186 TVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245

Query: 312 DFKSYDLAKLL 322
                 +   +
Sbjct: 246 ----IGVLAYI 252

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 87.9 bits (218), Expect = 2e-20
 Identities = 26/159 (16%), Positives = 48/159 (30%), Gaps = 40/159 (25%)

Query: 185 MLLDGGLDIDSVDKD--------------GLTALHKAIIGKKEAVISHLLRKG---ANPH 227
           +L++ G D+ +                  G   L  A    + A++  LL+     A+  
Sbjct: 119 LLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS 178

Query: 228 VKDGDGATPLHYAVQVG-----------AMQS-----VKLLIKYNVDVNVADNEGWTPLH 271
            +D  G T LH  V+V            +M +        L        + + +G TPL 
Sbjct: 179 ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA 238

Query: 272 IAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
           +A  S    +   +L                   +  + 
Sbjct: 239 LAASSGKIGVLAYILQREI-------HEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 84.1 bits (208), Expect = 7e-19
 Identities = 32/169 (18%), Positives = 55/169 (32%), Gaps = 40/169 (23%)

Query: 190 GLDIDSVDKDGLTALHKAI-IGKKEAVISHL------LRKGANPHVKDGD-GATPLHYAV 241
                        ++  A+     + + S L       ++  +   KD + G T L  A+
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 242 ---QVGAMQSVKLLIKY-----------NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI 287
                G   ++ LL+             N     +  +G T LHIAI+ RN  +  +L+ 
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122

Query: 288 NGADKSRKTKD--------------GKTALDMSLCYGRDFKSYDLAKLL 322
           NGAD                     G+  L ++ C         + K L
Sbjct: 123 NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN----QLAIVKFL 167

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 21/115 (18%), Positives = 36/115 (31%), Gaps = 26/115 (22%)

Query: 185 MLLDGGL---DIDSVDKDGLTALHKA-IIGKKE--------AVISHLLRKGANPH----- 227
            LL       DI + D  G T LH    +            ++ + +L  GA  H     
Sbjct: 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKL 225

Query: 228 --VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRD 280
             + +  G TPL  A   G +  +  +++        +       H A    +  
Sbjct: 226 EEITNRKGLTPLALAASSGKIGVLAYILQ-------REIHEPECRHAAAHHHHHH 273

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 95.6 bits (238), Expect = 3e-23
 Identities = 33/155 (21%), Positives = 54/155 (34%), Gaps = 30/155 (19%)

Query: 192 DIDSVDKDGLTALHKAIIGKK---EAVISHLLRKG-----------ANPHVKDGDGATPL 237
              +    G T L KA++  +    A I  LL+             A    +   G + L
Sbjct: 35  SAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSAL 94

Query: 238 HYAVQVGAMQSVKLLIKYNVDVNVADNE-------------GWTPLHIAIQSRNRDIAKV 284
           H A++  ++Q VKLL++   DV++                 G  PL +A  ++  D+   
Sbjct: 95  HIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY 154

Query: 285 LLING---ADKSRKTKDGKTALDMSLCYGRDFKSY 316
           LL N    A        G T L   +    +    
Sbjct: 155 LLENPHQPASLEATDSLGNTVLHALVMIADNSPEN 189

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 86.0 bits (213), Expect = 8e-20
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 32/145 (22%)

Query: 179 QIRYMDMLLDGGLDIDSVD-------------KDGLTALHKAIIGKKEAVISHLLRKG-- 223
            ++ + +L++ G D+                   G   L  A   K+  V+++LL     
Sbjct: 102 SLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161

Query: 224 -ANPHVKDGDGATPLH----------------YAVQVGAMQSVKLLIKYNVDVNVADNEG 266
            A+    D  G T LH                  +  G +Q    L        +++++G
Sbjct: 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQG 221

Query: 267 WTPLHIAIQSRNRDIAKVLLINGAD 291
            TPL +A +    +I + +L     
Sbjct: 222 LTPLKLAAKEGKIEIFRHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 76.0 bits (187), Expect = 4e-16
 Identities = 30/156 (19%), Positives = 51/156 (32%), Gaps = 39/156 (25%)

Query: 202 TALHKA--------IIGKKEAVISHLLRKGANPHVKDGDGATPLHYAV---QVGAMQSVK 250
             L           + G  E +  +      + + +   G T L  AV   Q G    + 
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 251 LLIKY-----------NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT--- 296
            L++            N        +G + LHIAI+ R+    K+L+ NGAD   +    
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 297 ----------KDGKTALDMSLCYGRDFKSYDLAKLL 322
                       G+  L ++ C       +D+   L
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTK----QWDVVTYL 155

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 63.3 bits (154), Expect = 9e-12
 Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 19/102 (18%)

Query: 184 DMLLDGGL---DIDSVDKDGLTALHKAIIGKKEA----------------VISHLLRKGA 224
             LL+       +++ D  G T LH  ++    +                + + L     
Sbjct: 153 TYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQ 212

Query: 225 NPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEG 266
              + +  G TPL  A + G ++  + +++       A +  
Sbjct: 213 LEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 7/76 (9%)

Query: 165 TAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGA 224
           + +   L        ++    L       +  +  GLT L  A    K  +  H+L++  
Sbjct: 186 SPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245

Query: 225 NPHVKDGDGATPLHYA 240
           +       GA   H+ 
Sbjct: 246 S-------GAAAHHHH 254

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 96.3 bits (239), Expect = 6e-23
 Identities = 28/145 (19%), Positives = 45/145 (31%), Gaps = 17/145 (11%)

Query: 177 SMQIRYMDMLLD-GGLDIDSVDKDGLTALH------------KAIIGKKEAVISHLLRKG 223
           +      + LLD     +   D    T LH             A     + ++  +++K 
Sbjct: 177 NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ 236

Query: 224 ANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN----VDVNVADNEGWTPLHIAIQSRNR 279
             P     +               S+   +         +N  D+ G T L+IA +  N 
Sbjct: 237 NRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNI 296

Query: 280 DIAKVLLINGADKSRKTKDGKTALD 304
            I   LL  GAD     K G   +D
Sbjct: 297 SIVDALLDYGADPFIANKSGLRPVD 321

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 93.2 bits (231), Expect = 7e-22
 Identities = 39/219 (17%), Positives = 69/219 (31%), Gaps = 20/219 (9%)

Query: 91  DDDDEEGEVKENDLDFESDWEEERSGIGAAASGDAATTISKYEEDLLKEVEQLLEPEERE 150
           +DD  +G           D E   +      +G   T       D L    ++++     
Sbjct: 1   NDDINKGP--------SGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSP 52

Query: 151 ILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAII- 209
           ++N N      K+     R L      M       L +   + +S               
Sbjct: 53  VVNDNEQKM--KLEAFLQRLLFPEIQEMPTS----LNNDSSNRNSEGGSSNQQQQHVSFD 106

Query: 210 GKKEAVISHLLRKGANPHVK-DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWT 268
              + V         N ++  D  G TPLH+   +  ++ VK L+K+  +    DN G +
Sbjct: 107 SLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGES 166

Query: 269 PLHIAIQSRN----RDIAKVLLINGADKSRKTKDGKTAL 303
            L  A++S N         +L         +    +T L
Sbjct: 167 CLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 205

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 84.3 bits (208), Expect = 1e-18
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 2/131 (1%)

Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSV-KLLIKY 255
                  L + +  + + + + L    +N + + G       +      +Q V       
Sbjct: 60  KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT 119

Query: 256 NVDVNVA-DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFK 314
            +++N+  D  G TPLH      N ++ K L+ +G+++      G++ L  ++    ++ 
Sbjct: 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYD 179

Query: 315 SYDLAKLLKIL 325
           S     LL  L
Sbjct: 180 SGTFEALLDYL 190

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 77.0 bits (189), Expect = 3e-16
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 4/98 (4%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKK----EAVISHLLRKGANPHVKDGDGATPLH 238
           M  ++           +   +      G++       +          + +D +G T L+
Sbjct: 229 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN 288

Query: 239 YAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS 276
            A ++G +  V  L+ Y  D  +A+  G  P+      
Sbjct: 289 IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 65.0 bits (158), Expect = 5e-12
 Identities = 16/104 (15%), Positives = 40/104 (38%), Gaps = 2/104 (1%)

Query: 140 VEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKD 199
           ++ L+    ++      +    K   +K            +  +D+       +++ D +
Sbjct: 225 LDILMGWIVKKQNRPIQSGTNEK--ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSN 282

Query: 200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV 243
           G T L+ A      +++  LL  GA+P + +  G  P+ +   +
Sbjct: 283 GDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 81.6 bits (201), Expect = 5e-18
 Identities = 23/101 (22%), Positives = 40/101 (39%), Gaps = 7/101 (6%)

Query: 225 NPHVKDGDGATPLHYAVQVG---AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI 281
                     T LH AV+     ++  V  L++ + +++    +G T LH    + N + 
Sbjct: 161 PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220

Query: 282 AKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
            K+LL   A      + G+T LD      +  K     +LL
Sbjct: 221 LKLLLRGKASIEIANESGETPLD----IAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 81.2 bits (200), Expect = 8e-18
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 9/119 (7%)

Query: 177 SMQIRYMDMLLDGGLDIDSVDK------DGLTALHKAIIGKKE---AVISHLLRKGANPH 227
           +  I  +      G+D+              TALH A+         ++  L++   N  
Sbjct: 140 TRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD 199

Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
            + G G+T LHY       + +KLL++    + +A+  G TPL IA + ++    ++L 
Sbjct: 200 KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 70.8 bits (173), Expect = 3e-14
 Identities = 19/77 (24%), Positives = 33/77 (42%)

Query: 179 QIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLH 238
            +  +D L+    ++D     G TALH   +      +  LLR  A+  + +  G TPL 
Sbjct: 184 SLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD 243

Query: 239 YAVQVGAMQSVKLLIKY 255
            A ++      +LL + 
Sbjct: 244 IAKRLKHEHCEELLTQA 260

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 79.3 bits (195), Expect = 4e-17
 Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 218 HLLRKGANP------HVKDGDGATPLHYAVQVGAMQS---VKLLIKYNVDVNVADNEGWT 268
                G +                 LH AV+V    S   V  +I+    ++    +G T
Sbjct: 169 EAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNT 228

Query: 269 PLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
            LH A      D  K+LL   A      + G+TALD++    
Sbjct: 229 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 270

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 77.0 bits (189), Expect = 3e-16
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 199 DGLTALHKAIIGKKEAVISH---LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
                LH A+    +A +     +++ G +   K  DG T LHYA        +KLL+K 
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG 248

Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
              V   +  G T L IA +  +++  ++L
Sbjct: 249 RALVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 68.5 bits (167), Expect = 2e-13
 Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
           +D ++  G  +D+   DG TALH A +  +   +  LL+  A     +  G T L  A +
Sbjct: 209 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268

Query: 243 VGAMQSVKLLI-----KYNVDVNV 261
               +  +LL       +   ++V
Sbjct: 269 KHHKECEELLEQAQAGTFAFPLHV 292

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 13/103 (12%)

Query: 229 KDGDGATPLHYAVQVGAMQSVKLLIKYNVDVN------VADNEGWTPLHIAIQSRNRD-- 280
           +       L  A+    + SV        D         A       LH+A++  N+   
Sbjct: 147 RCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASL 206

Query: 281 -IAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
            +   ++ NG     K  DG TAL  +  Y +     D  KLL
Sbjct: 207 PLVDFIIQNGGHLDAKAADGNTALHYAALYNQ----PDCLKLL 245

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 76.7 bits (188), Expect = 7e-16
 Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 3/133 (2%)

Query: 183 MDMLLDGGLDIDSV--DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYA 240
           M   L  G D++ V   +D  T L +A           LL+ GAN +  D  G  PLH+A
Sbjct: 216 MADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA 275

Query: 241 VQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGK 300
             +G      L +K   D+   D+EG  PL IA+++ N DI  +L +    ++     G+
Sbjct: 276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEA-AQGQ 334

Query: 301 TALDMSLCYGRDF 313
              +  L   RDF
Sbjct: 335 AGDETYLDIFRDF 347

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 69.8 bits (170), Expect = 1e-13
 Identities = 34/156 (21%), Positives = 55/156 (35%), Gaps = 2/156 (1%)

Query: 146 PEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALH 205
           P   + L   A  N          PL   T +  +   + LL  G +++  D  G   LH
Sbjct: 214 PTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH 273

Query: 206 KAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE 265
            A I     +    L++GA+   +D +G  PL  A++      V LL    +    A   
Sbjct: 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQG 333

Query: 266 GWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKT 301
                        RD + +   +    SR++ D  T
Sbjct: 334 --QAGDETYLDIFRDFSLMASDDPEKLSRRSHDLHT 367

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 6/122 (4%)

Query: 203 ALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVN-- 260
              K  I  +   +       +        GA     +    ++ ++   + +  DVN  
Sbjct: 170 VPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWV 229

Query: 261 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK 320
               +  TPL  A  + +    + LL NGA+ ++    G+  L  +   G       LA 
Sbjct: 230 NGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGH----TGLAC 285

Query: 321 LL 322
           L 
Sbjct: 286 LF 287

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 75.3 bits (185), Expect = 2e-15
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 9/112 (8%)

Query: 204 LHKAIIGKKEAVISHLLRKGA------NPHVKDGDGATPLHYAVQVGAMQS---VKLLIK 254
           L  AI  +    +      G                   LH AV+V    S   V  +I+
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 255 YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS 306
               ++    +G T LH A      D  K+LL   A      + G+TALD++
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 197 DKDGLTALHKAII--GKKEAVISHLLRK-GANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
                  LH A+    +    +   + + G +   K  DG T LHYA        +KLL+
Sbjct: 168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 227

Query: 254 KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
           K    V   +  G T L IA +  +++  ++L
Sbjct: 228 KGRALVGTVNEAGETALDIARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 13/95 (13%)

Query: 237 LHYAVQVGAMQSVKLLIKYNVDVN------VADNEGWTPLHIAIQSRNRD---IAKVLLI 287
           L  A+    + SV        D         A       LH+A++  N+    +   ++ 
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195

Query: 288 NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           NG     K  DG TAL     Y   +   D  KLL
Sbjct: 196 NGGHLDAKAADGNTALH----YAALYNQPDCLKLL 226

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 74.2 bits (182), Expect = 5e-15
 Identities = 14/119 (11%), Positives = 31/119 (26%), Gaps = 5/119 (4%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKD--GDGATPLHYAVQV 243
           LL     +  +  +   A   A       V++ L        +     +       A + 
Sbjct: 114 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAEN 173

Query: 244 GAMQSVKLLIKYNVDVNVAD--NEGWTPLHI-AIQSRNRDIAKVLLINGADKSRKTKDG 299
           G +  +  L +       A    E +      A+   + ++   LL      +      
Sbjct: 174 GHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE 232

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 64.6 bits (157), Expect = 7e-12
 Identities = 16/135 (11%), Positives = 37/135 (27%), Gaps = 21/135 (15%)

Query: 186 LLDGGLDIDSVDKDGLTALHKAI---IGKKEAVISHL---LRKGANPHVKD-------GD 232
           LLD  + +   +        K +   I +    +  +    +      V D         
Sbjct: 218 LLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ 277

Query: 233 GATPLHYAVQVGAMQSVKLL--------IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKV 284
           G   L   ++      +  +        IK          +    L +A++  N+    +
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337

Query: 285 LLINGADKSRKTKDG 299
           LL   +  +    + 
Sbjct: 338 LLSIPSVLALTKANN 352

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 63.0 bits (153), Expect = 2e-11
 Identities = 26/164 (15%), Positives = 47/164 (28%), Gaps = 16/164 (9%)

Query: 151 ILNQNATPNLGKISTAKWRPL------QTLTLSMQIRYMDM---LLDGGLDIDSVDKDGL 201
           I N    P L  I    W  L            M + Y +     L G  +++ V +  L
Sbjct: 9   IENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQ--L 66

Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV 261
             L+ A           L        +K               A+ ++ LL+  +  V V
Sbjct: 67  LCLYYA---HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV 123

Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK--DGKTAL 303
              E +    +A ++ +  +   L      +       +   A 
Sbjct: 124 IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 167

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 62.7 bits (152), Expect = 3e-11
 Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 11/102 (10%)

Query: 197 DKDGLTALHKAIIGKKEAVISHL--------LRKGANPHVKDGDGATPLHYAVQVGAMQS 248
              G   L   I    E ++  +        ++  A      GD    L  A+++G   +
Sbjct: 275 CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGA 334

Query: 249 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA 290
             LL+     + +         +I       D+  V L +  
Sbjct: 335 CALLLSIPSVLALTKA---NNYYINETGGRLDLRAVALEHHH 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 56.1 bits (135), Expect = 4e-09
 Identities = 21/161 (13%), Positives = 45/161 (27%), Gaps = 28/161 (17%)

Query: 186 LLDGGLDIDS--VDKDGLTALHKAIIGK-KEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
           L +      +  +  +   A   A +G+    VI+ LL         +          V 
Sbjct: 182 LCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVN 241

Query: 243 VGAMQSVKLLIKYNVDVNVADNEG-------------WTPLHIAIQSRNRDIAKVL---- 285
               + V  L + +    +++ +G             +  L   I+  +  +   +    
Sbjct: 242 PFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLL 301

Query: 286 ----LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
               +   A  +    D    L ++L  G          LL
Sbjct: 302 SIPGIKALAPTATIPGDANELLRLALRLGN----QGACALL 338

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 12/122 (9%), Positives = 27/122 (22%), Gaps = 12/122 (9%)

Query: 186 LLDGGLDIDSVDK--DGLTALHKAIIGKKEAVISHLLRKGANPHVKD--GDGATPLHY-A 240
           L +            +   A   A       V++ L              +      + A
Sbjct: 147 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA 206

Query: 241 VQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGK 300
           V  G    +  L+   V +  A+   +             +   +  +           K
Sbjct: 207 VGRGHHNVINFLLDCPVMLAYAEIHEFEYGEK-------YVNPFIARHVNRLKEMHDAFK 259

Query: 301 TA 302
            +
Sbjct: 260 LS 261

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 6e-04
 Identities = 37/223 (16%), Positives = 65/223 (29%), Gaps = 80/223 (35%)

Query: 33  SKVLVSSRQGSV-----GLSVTDKQLIKVRFCAVESKQEALLQTQMGEWEDPDDGSGSEY 87
            K+L+++R   V       + T   L          + ++LL                +Y
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL---------------LKY 310

Query: 88  DDDDDDDEEGEVKE-NDLDFESDWEEERSGIGAAASGDAAT--TISKYEEDLLKEVEQL- 143
            D    D   EV   N            S I  +     AT         D L  + +  
Sbjct: 311 LDCRPQDLPREVLTTNPRRL--------SIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 144 ---LEPEE-RE------ILNQNATPNLGKISTAKWRPLQTLTL---------SMQIRYMD 184
              LEP E R+      +   +A      I      P   L+L          M +  ++
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSA-----HI------PTILLSLIWFDVIKSDVMVV--VN 409

Query: 185 M-----LLDG----------GLDIDSVDK-DGLTALHKAIIGK 211
                 L++            + ++   K +   ALH++I+  
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	328
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.98
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.98
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.98
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.94
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.89
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.89
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.89
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.82
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.7e-36  Score=254.80  Aligned_cols=153  Identities=36%  Similarity=0.539  Sum_probs=95.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHH
Q 020274          170 PLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSV  249 (328)
Q Consensus       170 ~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv  249 (328)
                      +|+.||..|+.++|++||++|+++|.+|..|+||||+|+..++.+++++|+++|++++.++..|+||||+|+..|+.+++
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v   86 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV   86 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHH
Confidence            45666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          250 KLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       250 ~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      ++|+++|+++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.+|+    .+++++|....
T Consensus        87 ~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~----~~iv~~Ll~~G  159 (169)
T 4gpm_A           87 KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGN----EEVVKLLEKQG  159 (169)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHTC-
T ss_pred             HHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC----HHHHHHHHHCC
Confidence            66666666666666666666666666666666666666666666666666666666666665    56666665543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=7e-36  Score=250.98  Aligned_cols=163  Identities=31%  Similarity=0.465  Sum_probs=151.9

Q ss_pred             ccccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHH
Q 020274          130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAII  209 (328)
Q Consensus       130 ~~~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~  209 (328)
                      +...++|+.|++.|+.+.++.||+.|++++..  +..|+||||+|+..++.+++++|++.|++++.++..|+||||+|+.
T Consensus         2 sdlg~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~--d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~   79 (169)
T 4gpm_A            2 SELGKRLIEAAENGNKDRVKDLIENGADVNAS--DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAE   79 (169)
T ss_dssp             CHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHH
Confidence            34567899999999999999999999988764  7899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020274          210 GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING  289 (328)
Q Consensus       210 ~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  289 (328)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        80 ~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  159 (169)
T 4gpm_A           80 NGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG  159 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             cCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 020274          290 ADKSR  294 (328)
Q Consensus       290 ad~~~  294 (328)
                      |++..
T Consensus       160 A~ie~  164 (169)
T 4gpm_A          160 GWLEH  164 (169)
T ss_dssp             -----
T ss_pred             CCcCC
Confidence            99864

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.4e-35  Score=266.15  Aligned_cols=191  Identities=26%  Similarity=0.309  Sum_probs=178.9

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPN-LGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK  211 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g  211 (328)
                      ...|+.|+..+..+.++.|++.+.+++ ++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~   89 (282)
T 1oy3_D           10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVR   89 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTT
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            357899999999999999999998854 5556889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCC-----------------------------------------------CCCCCCCCChHHHHHHHcC
Q 020274          212 KEAVISHLLRKGAN-----------------------------------------------PHVKDGDGATPLHYAVQVG  244 (328)
Q Consensus       212 ~~~~v~~Ll~~g~d-----------------------------------------------~~~~d~~g~tpLh~A~~~g  244 (328)
                      +.+++++|+++|++                                               ++.++..|.||||+|+..|
T Consensus        90 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  169 (282)
T 1oy3_D           90 AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK  169 (282)
T ss_dssp             CHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTT
T ss_pred             CcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcC
Confidence            99999999998865                                               6778889999999999999


Q ss_pred             CHHHHHHHHhCCCCccccCCC-CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHh
Q 020274          245 AMQSVKLLIKYNVDVNVADNE-GWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  323 (328)
Q Consensus       245 ~~~iv~~Ll~~ga~in~~d~~-g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~  323 (328)
                      +.+++++|+++|++++..+.. |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+    .+++++|.
T Consensus       170 ~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~----~~~v~~Ll  245 (282)
T 1oy3_D          170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN----PILARLLR  245 (282)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC----HHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCC----cHHHHHHH
Confidence            999999999999999999865 9999999999999999999999999999999999999999999999    99999998


Q ss_pred             hCCC
Q 020274          324 ILPV  327 (328)
Q Consensus       324 ~~~~  327 (328)
                      ....
T Consensus       246 ~~ga  249 (282)
T 1oy3_D          246 AHGA  249 (282)
T ss_dssp             HTTC
T ss_pred             HcCC
Confidence            7654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.8e-35  Score=261.94  Aligned_cols=189  Identities=22%  Similarity=0.268  Sum_probs=179.6

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCC-CCCccCCCCCcHHHHHHHcC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGL-DIDSVDKDGLTALHKAIIGK  211 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-di~~~d~~g~t~L~~A~~~g  211 (328)
                      ...++.|+..+..+.++.|++.|.+++..  +..|+||||+|+..|+.+++++|+++|+ +++.++..|.||||+|+..|
T Consensus        58 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~  135 (253)
T 1yyh_A           58 ETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLA  135 (253)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcC
Confidence            45789999999999999999999887764  7889999999999999999999999987 89999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020274          212 KEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD  291 (328)
Q Consensus       212 ~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  291 (328)
                      +.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++
T Consensus       136 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  215 (253)
T 1yyh_A          136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN  215 (253)
T ss_dssp             CSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          292 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       292 ~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      ++.+|..|+|||++|+.+|+    .+|+++|+..+.
T Consensus       216 ~~~~d~~g~tpl~~A~~~g~----~~i~~~l~~~~~  247 (253)
T 1yyh_A          216 RDITDHMDRLPRDIAQERMH----HDIVRLLDLEHH  247 (253)
T ss_dssp             TTCCCTTCCCHHHHHHHTTC----HHHHHHHHC---
T ss_pred             ccccccCCCCHHHHHHHcCC----HHHHHHHHHHhh
Confidence            99999999999999999999    999999987654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6.7e-35  Score=249.52  Aligned_cols=187  Identities=26%  Similarity=0.350  Sum_probs=176.9

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCC-CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNA-TPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK  211 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g  211 (328)
                      ...++.|+..+..+.++.++..+. +++  ..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   83 (201)
T 3hra_A            6 VGALLEAANQRDTKKVKEILQDTTYQVD--EVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG   83 (201)
T ss_dssp             TTHHHHHHHTTCHHHHHHHHTCTTCCTT--CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccHHHHHHHhccHHHHHHHHHcCCCCCC--CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            357899999999999999999876 444  45788999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHH-HCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCC-CCccccCCCCCcHHHHHHHcCC-----HHHHHH
Q 020274          212 KEAVISHLL-RKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN-VDVNVADNEGWTPLHIAIQSRN-----RDIAKV  284 (328)
Q Consensus       212 ~~~~v~~Ll-~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~g-a~in~~d~~g~TpL~~A~~~g~-----~~iv~~  284 (328)
                      +.+++++|+ ..+++++.++..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+|+..++     .+++++
T Consensus        84 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~  163 (201)
T 3hra_A           84 RTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL  163 (201)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHH
T ss_pred             CHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHH
Confidence            999999999 677899999999999999999999999999999999 9999999999999999999998     999999


Q ss_pred             HHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          285 LLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       285 Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      |+++|++++.+|..|.||||+|+.+|+    .+++++|...
T Consensus       164 Ll~~ga~~~~~~~~g~t~l~~A~~~~~----~~~~~~Ll~~  200 (201)
T 3hra_A          164 LMENGADQSIKDNSGRTAMDYANQKGY----TEISKILAQY  200 (201)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHTC
T ss_pred             HHHCCCCCCccCCCCCCHHHHHHHcCC----HhHHHHHHhc
Confidence            999999999999999999999999999    9999999865

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.3e-36  Score=270.63  Aligned_cols=184  Identities=26%  Similarity=0.339  Sum_probs=155.9

Q ss_pred             HHHHHHHhhCh-HHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCH
Q 020274          135 DLLKEVEQLLE-PEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKE  213 (328)
Q Consensus       135 ~l~~ai~~~~~-~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~  213 (328)
                      .++.++..+.. ..++.+++.|++++..  +..|+||||+|+..|+.++|++|++.|++++.++..|.||+|+|+..++.
T Consensus        55 ~L~~a~~~~~~~~~v~~Ll~~Gadvn~~--d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~  132 (269)
T 4b93_B           55 PLCQCPKCAPAQKRLAKVPASGLGVNVT--SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHF  132 (269)
T ss_dssp             --------------------CCCCTTCC--CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHhCCHHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChH
Confidence            34455554443 4567888999888764  78899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 020274          214 AVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS  293 (328)
Q Consensus       214 ~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  293 (328)
                      +++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|+++|.++..|.||||+|+..|+.++|++|+++|+|++
T Consensus       133 ~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~  212 (269)
T 4b93_B          133 QVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ  212 (269)
T ss_dssp             HHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          294 RKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       294 ~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      .+|..|+||||+|+.++      +|+++|+.++
T Consensus       213 ~~d~~G~TpL~~A~~~~------~i~~lL~~l~  239 (269)
T 4b93_B          213 VLNKRQRTAVDCAEQNS------KIMELLQVVP  239 (269)
T ss_dssp             CCCTTSCCSGGGSCTTC------HHHHHTTC--
T ss_pred             CcCCCCCCHHHHHHhCC------cHHHHHHHHH
Confidence            99999999999998766      4667766554

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.6e-34  Score=251.16  Aligned_cols=190  Identities=22%  Similarity=0.262  Sum_probs=181.1

Q ss_pred             ccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCC-CCCccCCCCCcHHHHHHHc
Q 020274          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGL-DIDSVDKDGLTALHKAIIG  210 (328)
Q Consensus       132 ~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-di~~~d~~g~t~L~~A~~~  210 (328)
                      ....++.|+..+..+.++.+++.|.+++..  +..|+||||+|+..|+.+++++|++.++ +++.++..|.||||+|+..
T Consensus        25 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~  102 (223)
T 2f8y_A           25 GETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL  102 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHH
T ss_pred             CCchHHHHHHcCCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHh
Confidence            345789999999999999999999887654  7889999999999999999999999987 8999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020274          211 KKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA  290 (328)
Q Consensus       211 g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  290 (328)
                      ++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+
T Consensus       103 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga  182 (223)
T 2f8y_A          103 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA  182 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             CcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          291 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       291 d~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      +++.++..|.|||++|+.+|+    .+++++|.....
T Consensus       183 ~~~~~~~~g~t~l~~A~~~~~----~~i~~~L~~~g~  215 (223)
T 2f8y_A          183 NRDITDHMDRLPRDIAQERMH----HDIVRLLDEYNL  215 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTC----HHHHHHHHHTTC
T ss_pred             CCccccccCCCHHHHHHHhcc----hHHHHHHHHcCC
Confidence            999999999999999999999    999999987653

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.2e-34  Score=253.63  Aligned_cols=186  Identities=24%  Similarity=0.288  Sum_probs=174.0

Q ss_pred             HHHHHHHHhhChHHHHHHHhc-CCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCC-----CccCCCCCcHHHHH
Q 020274          134 EDLLKEVEQLLEPEEREILNQ-NATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDI-----DSVDKDGLTALHKA  207 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~-g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi-----~~~d~~g~t~L~~A  207 (328)
                      ..++.|+..+..+.++.+++. |.+++..  +..|+||||+|+..|+.+++++|++.|+++     +.++..|.||||+|
T Consensus         5 t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A   82 (232)
T 2rfa_A            5 SPLLLAAKENDVQALSKLLKFEGCEVHQR--GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA   82 (232)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHhcCCCcccC--CCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH
Confidence            468999999999999999998 7776654  789999999999999999999999999987     67788999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCCCC-------------CCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHH
Q 020274          208 IIGKKEAVISHLLRKGANPHVKDG-------------DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI  274 (328)
Q Consensus       208 ~~~g~~~~v~~Ll~~g~d~~~~d~-------------~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~  274 (328)
                      +..|+.+++++|+++|++++.++.             .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~  162 (232)
T 2rfa_A           83 VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI  162 (232)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            999999999999999999998765             7999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHH----HHHHHcCCCC------CCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          275 QSRNRDIA----KVLLINGADK------SRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       275 ~~g~~~iv----~~Ll~~gad~------~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      ..|+.+++    ++|+++|+++      +.+|..|+||||+|+..|+    .+++++|...
T Consensus       163 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~----~~~v~~Ll~~  219 (232)
T 2rfa_A          163 LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN----IVMFQHLMQK  219 (232)
T ss_dssp             TCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC----HHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC----HHHHHHHHhc
Confidence            99999988    9999999998      5899999999999999999    9999988754

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=2.4e-34  Score=251.40  Aligned_cols=188  Identities=28%  Similarity=0.329  Sum_probs=143.8

Q ss_pred             ccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC
Q 020274          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK  211 (328)
Q Consensus       132 ~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g  211 (328)
                      ....++.|+..+..+.++.+++.|.+++.  .+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..+
T Consensus        40 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  117 (231)
T 3aji_A           40 SRTALHWACSAGHTEIVEFLLQLGVPVND--KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN  117 (231)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHhCCCCCC--cCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            34567777777777777777777766554  3566777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020274          212 KEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD  291 (328)
Q Consensus       212 ~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  291 (328)
                      +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus       118 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  197 (231)
T 3aji_A          118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS  197 (231)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          292 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       292 ~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      ++.+|..|.|||++|+..++    .+++++|...
T Consensus       198 ~~~~~~~g~t~l~~A~~~~~----~~i~~lL~~~  227 (231)
T 3aji_A          198 IYIENKEEKTPLQVAKGGLG----LILKRLAEGE  227 (231)
T ss_dssp             SCCCCTTSCCHHHHSCHHHH----HHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHhhHH----HHHHHHHccc
Confidence            77777777777777777666    7777777653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.3e-34  Score=253.08  Aligned_cols=188  Identities=21%  Similarity=0.256  Sum_probs=178.9

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCH
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKE  213 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~  213 (328)
                      ..++.|+..|+.+.++.++..+... ....+..|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus         8 ~~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   86 (231)
T 3aji_A            8 IMICNLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXD   86 (231)
T ss_dssp             SHHHHHHHHTCHHHHHHHHHHCGGG-GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCH
T ss_pred             chHHHHHHhCCHHHHHHHHHhchhh-hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHH
Confidence            4589999999999999999987543 345578999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 020274          214 AVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS  293 (328)
Q Consensus       214 ~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  293 (328)
                      +++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus        87 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  166 (231)
T 3aji_A           87 EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN  166 (231)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          294 RKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       294 ~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      .++..|.||||+|+..|+    .+++++|....
T Consensus       167 ~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g  195 (231)
T 3aji_A          167 IQDTEGNTPLHLACDEER----VEEAKFLVTQG  195 (231)
T ss_dssp             CCCTTSCCHHHHHHHTTC----HHHHHHHHHTT
T ss_pred             ccCCCCCCHHHHHHHCCC----HHHHHHHHHCC
Confidence            999999999999999999    99999998764

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.3e-34  Score=255.96  Aligned_cols=181  Identities=28%  Similarity=0.293  Sum_probs=155.7

Q ss_pred             HhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHH
Q 020274          141 EQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLL  220 (328)
Q Consensus       141 ~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll  220 (328)
                      ..+..+.++.+++.|.+++.. .+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+
T Consensus        32 ~~~~~~~v~~Ll~~g~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  110 (253)
T 1yyh_A           32 EEDAPAVISDFIYQGASLHNQ-TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILI  110 (253)
T ss_dssp             --------------------C-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cCCChHHHHHHHHccCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            344788899999999887533 3788999999999999999999999999999999999999999999999999999999


Q ss_pred             HCCC-CCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Q 020274          221 RKGA-NPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG  299 (328)
Q Consensus       221 ~~g~-d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G  299 (328)
                      ++|. +++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       111 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  190 (253)
T 1yyh_A          111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE  190 (253)
T ss_dssp             HSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            9987 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          300 KTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       300 ~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      .||||+|+..|+    .+++++|....
T Consensus       191 ~tpL~~A~~~~~----~~~v~~Ll~~g  213 (253)
T 1yyh_A          191 ETPLFLAAREGS----YETAKVLLDHF  213 (253)
T ss_dssp             CCHHHHHHHHTC----HHHHHHHHHTT
T ss_pred             CCHHHHHHHCCC----HHHHHHHHHcC
Confidence            999999999999    99999998764

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.4e-33  Score=247.38  Aligned_cols=176  Identities=22%  Similarity=0.312  Sum_probs=97.7

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCC-CCCCccCCCCCcHHHHHHHcCC
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGG-LDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-adi~~~d~~g~t~L~~A~~~g~  212 (328)
                      ..++.|+..+..+.++.+++.|.+++..  +..|.||||+|+..|+.+++++|++.| .+++..+..|.||||+|+..++
T Consensus        46 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  123 (237)
T 3b7b_A           46 TPLMEAAENNHLEAVKYLIKAGALVDPK--DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKH  123 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCCCC--CTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CHHHHHHHhCCHHHHHHHHhCCCCCCCC--CCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCC
Confidence            3455555555555555555555444332  444555555555555555555555555 4555555555555555555555


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020274          213 EAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK  292 (328)
Q Consensus       213 ~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~  292 (328)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus       124 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~  203 (237)
T 3b7b_A          124 VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV  203 (237)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred             HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCCCCCCCcHHHHHHHcCC
Q 020274          293 SRKTKDGKTALDMSLCYGR  311 (328)
Q Consensus       293 ~~~d~~G~TpL~~A~~~g~  311 (328)
                      +.+|..|+||||+|+.+|+
T Consensus       204 ~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          204 TLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             TCCCTTSCCHHHHSCTTCH
T ss_pred             CccCCCCCCHHHHHHHHHH
Confidence            5555555555555555554

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-34  Score=260.58  Aligned_cols=189  Identities=27%  Similarity=0.344  Sum_probs=152.1

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCC------CCCCCCCCCcHHHHHHHhCCH-HHHHHHHHCCCCCCccCCCCCcHHHH
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPN------LGKISTAKWRPLQTLTLSMQI-RYMDMLLDGGLDIDSVDKDGLTALHK  206 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~------~~~~~~~g~t~L~~A~~~g~~-~~v~~Ll~~gadi~~~d~~g~t~L~~  206 (328)
                      ..|+.|+..|+.+.++.||+.+..+.      ....+..+.||||.|+..+.. .++++|++.|+++|.+|..|+||||+
T Consensus        13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~   92 (269)
T 4b93_B           13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHV   92 (269)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            57999999999999999999887643      344567899999999988876 48899999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 020274          207 AIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL  286 (328)
Q Consensus       207 A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll  286 (328)
                      |+..|+.++|++|++.|++++.++..|.||+|+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+
T Consensus        93 A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll  172 (269)
T 4b93_B           93 AALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL  172 (269)
T ss_dssp             HHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHH
T ss_pred             HHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          287 INGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       287 ~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      ++|++++.++..|.||||+|+.+|+    .+++++|....
T Consensus       173 ~~gadvn~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~G  208 (269)
T 4b93_B          173 QHGASINASNNKGNTALHEAVIEKH----VFVVELLLLHG  208 (269)
T ss_dssp             HTTCCTTCBCTTSCBHHHHHHHTTC----HHHHHHHHHTT
T ss_pred             HCCCCCCccccCCCcHHHHHHHcCC----HHHHHHHHHCC
Confidence            9999999999999999999999999    99999998764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=1.2e-33  Score=246.12  Aligned_cols=184  Identities=23%  Similarity=0.208  Sum_probs=123.6

Q ss_pred             HHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCC--CCCCc-cCCCCCcHHHHHHHcC
Q 020274          135 DLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGG--LDIDS-VDKDGLTALHKAIIGK  211 (328)
Q Consensus       135 ~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--adi~~-~d~~g~t~L~~A~~~g  211 (328)
                      .++.|+..+..+.++.+++.+..... ..+..|+||||+|+..|+.+++++|++.|  ++++. .+..|.||||+|+..|
T Consensus         5 ~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~   83 (228)
T 2dzn_A            5 PLHQACMENEFFKVQELLHSKPSLLL-QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   83 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCGGGTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHC
T ss_pred             HHHHHHHhCCHHHHHHHHhcCccccc-cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcC
Confidence            45666666777777777666654432 23556667777777777777777777766  44444 5566667777777777


Q ss_pred             CHHHHHHHHHCC--CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020274          212 KEAVISHLLRKG--ANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING  289 (328)
Q Consensus       212 ~~~~v~~Ll~~g--~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  289 (328)
                      +.+++++|+++|  ++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|
T Consensus        84 ~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  163 (228)
T 2dzn_A           84 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  163 (228)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             CHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            777777777766  666666666777777777777777777777777777766666777777777777777777777766


Q ss_pred             -CCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHh
Q 020274          290 -ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  323 (328)
Q Consensus       290 -ad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~  323 (328)
                       ++++.+|..|+||||+|+..|+    .+++++|.
T Consensus       164 ~~~~~~~d~~g~t~L~~A~~~~~----~~~v~~Ll  194 (228)
T 2dzn_A          164 KSAVNWQDKQGWTPLFHALAEGH----GDAAVLLV  194 (228)
T ss_dssp             CCCSCCCCTTSCCHHHHHHHTTC----HHHHHHHH
T ss_pred             cccccCcCCCCCCHHHHHHHcCC----HHHHHHHH
Confidence             6677777777777777777666    66666665

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.6e-33  Score=245.85  Aligned_cols=187  Identities=24%  Similarity=0.331  Sum_probs=140.5

Q ss_pred             HHHHHHHHhhChHHHHHHHh----cCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHH
Q 020274          134 EDLLKEVEQLLEPEEREILN----QNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAII  209 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~----~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~  209 (328)
                      ..++.|+..|..+.++.+++    .+.+++.  .+..|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+.
T Consensus        11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~   88 (241)
T 1k1a_A           11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDI--YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE   88 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc--ccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            45677777777777777775    4544443  36667777777777777777777777777777777777777777777


Q ss_pred             cCCHHHHHHHHHCCC----CCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccC-CCCCcHHHHHHHcCCHHHHHH
Q 020274          210 GKKEAVISHLLRKGA----NPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAKV  284 (328)
Q Consensus       210 ~g~~~~v~~Ll~~g~----d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d-~~g~TpL~~A~~~g~~~iv~~  284 (328)
                      .|+.+++++|+++|+    +++.++..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++
T Consensus        89 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  168 (241)
T 1k1a_A           89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQL  168 (241)
T ss_dssp             TTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHH
Confidence            777777777777776    667777777777777777777777777777777777777 667777777777777777777


Q ss_pred             HHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          285 LLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       285 Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      |+++|++++.++..|.||||+|+..|+    .+++++|....
T Consensus       169 Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g  206 (241)
T 1k1a_A          169 LLQHGANVNAQMYSGSSALHSASGRGL----LPLVRTLVRSG  206 (241)
T ss_dssp             HHHTTCCTTCBCTTSCBHHHHHHHHTC----HHHHHHHHHTT
T ss_pred             HHHcCCCCCCcCCCCCCHHHHHHHcCC----HHHHHHHHhcC
Confidence            777777777777777777777777777    77777776543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=3.8e-35  Score=257.91  Aligned_cols=190  Identities=25%  Similarity=0.267  Sum_probs=173.5

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCC--CCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATP--NLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK  211 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g  211 (328)
                      ..|+.|+..+..+.++.+++.+...  +++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus        10 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   89 (236)
T 1ikn_D           10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG   89 (236)
T ss_dssp             CTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHT
T ss_pred             chhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            4578899999999999998877643  45566889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCC------CCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCC-CCCcHHHHHHHcCCHHHHHH
Q 020274          212 KEAVISHLLRKGAN------PHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN-EGWTPLHIAIQSRNRDIAKV  284 (328)
Q Consensus       212 ~~~~v~~Ll~~g~d------~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~-~g~TpL~~A~~~g~~~iv~~  284 (328)
                      +.+++++|+++|++      ++..+..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++
T Consensus        90 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~  169 (236)
T 1ikn_D           90 CLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL  169 (236)
T ss_dssp             CHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            99999999999976      466788999999999999999999999999999999998 99999999999999999999


Q ss_pred             HHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          285 LLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       285 Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      |+++|++++.+|..|.||||+|+.+|+    .+++++|.....
T Consensus       170 Ll~~ga~~~~~~~~g~tpl~~A~~~~~----~~~~~~Ll~~ga  208 (236)
T 1ikn_D          170 LLKCGADVNRVTYQGYSPYQLTWGRPS----TRIQQQLGQLTL  208 (236)
T ss_dssp             HHTTTCCSCCCCTTCCCGGGGCTTSSC----HHHHHHHHTTSC
T ss_pred             HHHcCCCCCcccCCCCCHHHHHHccCc----hHHHHHHHHcch
Confidence            999999999999999999999999999    999999987653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=9e-34  Score=248.64  Aligned_cols=189  Identities=26%  Similarity=0.295  Sum_probs=180.0

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~  212 (328)
                      ...++.|+..|..+.++.+++.|.+++..  +..|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+
T Consensus        12 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   89 (237)
T 3b7b_A           12 RSPLHAAAEAGHVDICHMLVQAGANIDTC--SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGH   89 (237)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCcCcc--CCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCC
Confidence            35689999999999999999999887654  7789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCC-CCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020274          213 EAVISHLLRKG-ANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD  291 (328)
Q Consensus       213 ~~~v~~Ll~~g-~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  291 (328)
                      .+++++|+++| .+++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++
T Consensus        90 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~  169 (237)
T 3b7b_A           90 YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD  169 (237)
T ss_dssp             HHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC
T ss_pred             HHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999 89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          292 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       292 ~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      ++.+|..|.||||+|+..|+    .+++++|.....
T Consensus       170 ~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~ga  201 (237)
T 3b7b_A          170 LHAVNIHGDSPLHIAARENR----YDCVVLFLSRDS  201 (237)
T ss_dssp             TTCCCTTCCCHHHHHHHTTC----HHHHHHHHTTTC
T ss_pred             CCCcCCCCCCHHHHHHHhCC----HhHHHHHHHcCC
Confidence            99999999999999999998    999999987643

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=5.2e-34  Score=243.01  Aligned_cols=160  Identities=28%  Similarity=0.342  Sum_probs=155.4

Q ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q 020274          162 KISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAV  241 (328)
Q Consensus       162 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~  241 (328)
                      ..+..|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  109 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI  109 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            34788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHH
Q 020274          242 QVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKL  321 (328)
Q Consensus       242 ~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~l  321 (328)
                      ..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+    .+++++
T Consensus       110 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----~~~v~~  185 (192)
T 2rfm_A          110 IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGR----QEVIKI  185 (192)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTC----HHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCc----HHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999    999999


Q ss_pred             HhhC
Q 020274          322 LKIL  325 (328)
Q Consensus       322 L~~~  325 (328)
                      |...
T Consensus       186 Ll~~  189 (192)
T 2rfm_A          186 FTEV  189 (192)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8753

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.7e-34  Score=255.45  Aligned_cols=188  Identities=20%  Similarity=0.182  Sum_probs=170.3

Q ss_pred             HHHHHHHHhhChHHH----HHHHhcCCCCCCC--CCCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCCCcc--------
Q 020274          134 EDLLKEVEQLLEPEE----REILNQNATPNLG--KISTAKWRPLQTLTLS---MQIRYMDMLLDGGLDIDSV--------  196 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v----~~lL~~g~~~~~~--~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~gadi~~~--------  196 (328)
                      ..|+.|+..|+.+.+    +.+++.|.+++..  ..+..|+||||+|+..   |+.+++++|++.|++++..        
T Consensus         4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~   83 (256)
T 2etb_A            4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQC   83 (256)
T ss_dssp             HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCC
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccc
Confidence            468999999999755    4555578877651  1478999999999999   9999999999999887643        


Q ss_pred             ---CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-------------CChHHHHHHHcCCHHHHHHHHh---CCC
Q 020274          197 ---DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGD-------------GATPLHYAVQVGAMQSVKLLIK---YNV  257 (328)
Q Consensus       197 ---d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~-------------g~tpLh~A~~~g~~~iv~~Ll~---~ga  257 (328)
                         +..|.||||+|+..|+.+++++|+++|++++.++..             |.||||+|+..|+.+++++|++   +|+
T Consensus        84 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga  163 (256)
T 2etb_A           84 TDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA  163 (256)
T ss_dssp             CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             ccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence               367999999999999999999999999999999886             9999999999999999999999   999


Q ss_pred             CccccCCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCC-------CCCCCCCCcHHHHHHHcCCCCChHHHHHH
Q 020274          258 DVNVADNEGWTPLHIAIQ--SRNRD-------IAKVLLINGADK-------SRKTKDGKTALDMSLCYGRDFKSYDLAKL  321 (328)
Q Consensus       258 ~in~~d~~g~TpL~~A~~--~g~~~-------iv~~Ll~~gad~-------~~~d~~G~TpL~~A~~~g~~~~~~~i~~l  321 (328)
                      +++.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||||+|+..|+    .+++++
T Consensus       164 ~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~----~~~v~~  239 (256)
T 2etb_A          164 SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK----IEIFRH  239 (256)
T ss_dssp             CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTC----HHHHHH
T ss_pred             CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCC----HHHHHH
Confidence            999999999999999999  78888       999999999999       9999999999999999999    999999


Q ss_pred             HhhC
Q 020274          322 LKIL  325 (328)
Q Consensus       322 L~~~  325 (328)
                      |...
T Consensus       240 Ll~~  243 (256)
T 2etb_A          240 ILQR  243 (256)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            8764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=9.9e-34  Score=264.64  Aligned_cols=186  Identities=21%  Similarity=0.192  Sum_probs=162.1

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCc------------------
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDS------------------  195 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~------------------  195 (328)
                      ..|+.|+..|..+.++.|++.|.+++..  +..|+||||+|+..|+.++|++|+++|++++.                  
T Consensus        22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~   99 (364)
T 3ljn_A           22 EKIHVAARKGQTDEVRRLIETGVSPTIQ--NRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDL   99 (364)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCcccc--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHH
Confidence            4567777777777777777777665543  56677777777777777777777776665544                  


Q ss_pred             ----------------------------------cCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCChHHHH
Q 020274          196 ----------------------------------VDKDGLTALHKAIIGK--KEAVISHLLRKGANPHVKDGDGATPLHY  239 (328)
Q Consensus       196 ----------------------------------~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~d~~~~d~~g~tpLh~  239 (328)
                                                        ++..|.||||+|+..|  +.+++++|+++|++++.++..|.||||+
T Consensus       100 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  179 (364)
T 3ljn_A          100 VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR  179 (364)
T ss_dssp             HHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence                                              6778999999999999  9999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCC-----ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCC
Q 020274          240 AVQVGAMQSVKLLIKYNVD-----VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFK  314 (328)
Q Consensus       240 A~~~g~~~iv~~Ll~~ga~-----in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~  314 (328)
                      |+..|+.+++++|+++|++     ++..+..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+   
T Consensus       180 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~---  256 (364)
T 3ljn_A          180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAM---  256 (364)
T ss_dssp             HHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCC---
T ss_pred             HHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh---
Confidence            9999999999999999998     99999999999999999999999999999999999999999999999999999   


Q ss_pred             hHHHHHHHhhC
Q 020274          315 SYDLAKLLKIL  325 (328)
Q Consensus       315 ~~~i~~lL~~~  325 (328)
                       .+++++|...
T Consensus       257 -~~~v~~Ll~~  266 (364)
T 3ljn_A          257 -VLLTKELLQK  266 (364)
T ss_dssp             -HHHHHHHHHH
T ss_pred             -HHHHHHHHHc
Confidence             9999998764

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.9e-34  Score=250.51  Aligned_cols=189  Identities=25%  Similarity=0.276  Sum_probs=175.1

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCC----CCCccCCCCCcHHHHHH
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGL----DIDSVDKDGLTALHKAI  208 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----di~~~d~~g~t~L~~A~  208 (328)
                      ...++.|+..+..+.++.|++.|.+++..  +..|+||||+|+..|+.+++++|++.|+    +++.++..|.||||+|+
T Consensus        47 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~  124 (241)
T 1k1a_A           47 QTPLHLAVITTLPSVVRLLVTAGASPMAL--DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV  124 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHH
Confidence            35689999999999999999999887754  7789999999999999999999999987    88999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 020274          209 IGKKEAVISHLLRKGANPHVKD-GDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI  287 (328)
Q Consensus       209 ~~g~~~~v~~Ll~~g~d~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~  287 (328)
                      ..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++
T Consensus       125 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  204 (241)
T 1k1a_A          125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR  204 (241)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999999988 789999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          288 NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       288 ~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      +|++++.+|..|+||||+|+..|+    .++++.|...|.
T Consensus       205 ~ga~~~~~~~~g~tpl~~A~~~~~----~~i~~~l~~~~a  240 (241)
T 1k1a_A          205 SGADSSLKNCHNDTPLMVARSRRV----IDILRGKATRPA  240 (241)
T ss_dssp             TTCCTTCCCTTSCCTTTTCSSHHH----HHHHTC------
T ss_pred             cCCCCCCcCCCCCCHHHHHHhcCc----HHHHhhhccCCC
Confidence            999999999999999999999998    999998877653

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.7e-33  Score=255.41  Aligned_cols=187  Identities=26%  Similarity=0.337  Sum_probs=153.9

Q ss_pred             ccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC
Q 020274          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK  211 (328)
Q Consensus       132 ~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g  211 (328)
                      ....++.|+..|..+.++.+++.|.+++.  .+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus        40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g  117 (299)
T 1s70_B           40 DGAVFLAACSSGDTEEVLRLLERGADINY--ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (299)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTC--BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCcc--cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence            34578999999999999999999988765  4788999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCC-----------------------------------------------------------
Q 020274          212 KEAVISHLLRKGANPHVKDGD-----------------------------------------------------------  232 (328)
Q Consensus       212 ~~~~v~~Ll~~g~d~~~~d~~-----------------------------------------------------------  232 (328)
                      +.+++++|+++|++++.++..                                                           
T Consensus       118 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  197 (299)
T 1s70_B          118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (299)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcC
Confidence            999999999999999876654                                                           


Q ss_pred             -CChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 020274          233 -GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR  311 (328)
Q Consensus       233 -g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~  311 (328)
                       |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+....
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~  277 (299)
T 1s70_B          198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDIL  277 (299)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGG
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHH
Confidence             5566777777777777777777777777777777777777777777777777777777777777777777777755433


Q ss_pred             CCChHHHHHHHhh
Q 020274          312 DFKSYDLAKLLKI  324 (328)
Q Consensus       312 ~~~~~~i~~lL~~  324 (328)
                          ..+.++++.
T Consensus       278 ----~~l~~l~~~  286 (299)
T 1s70_B          278 ----GYLEELQKK  286 (299)
T ss_dssp             ----HHHHHHHHH
T ss_pred             ----HHHHHHHHH
Confidence                444444443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.7e-33  Score=252.32  Aligned_cols=185  Identities=25%  Similarity=0.317  Sum_probs=166.4

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCH
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKE  213 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~  213 (328)
                      ..|+.|+..+..+.++.|++.|.+++.  .+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus        61 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~  138 (285)
T 3d9h_A           61 SPMHEAAIHGHQLSLRNLISQGWAVNI--ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSW  138 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSCE--ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCC--cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHH
Confidence            468889999999999999998877654  477899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 020274          214 AVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS  293 (328)
Q Consensus       214 ~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  293 (328)
                      +++++|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus       139 ~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  217 (285)
T 3d9h_A          139 DCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN  217 (285)
T ss_dssp             HHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC
Confidence            99999999999987644 59999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          294 RKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       294 ~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      . +..|.||||+|+..|+    .+++++|....
T Consensus       218 ~-~~~g~t~L~~A~~~~~----~~~v~~Ll~~g  245 (285)
T 3d9h_A          218 Q-GKGQDSPLHAVVRTAS----EELACLLMDFG  245 (285)
T ss_dssp             C-CBTTBCHHHHHHHTTC----HHHHHHHHHTT
T ss_pred             C-CCCCCCHHHHHHHcCC----HHHHHHHHHCC
Confidence            4 8889999999999998    89999887764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=1.9e-33  Score=234.92  Aligned_cols=158  Identities=35%  Similarity=0.499  Sum_probs=152.8

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 020274          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV  243 (328)
Q Consensus       164 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~  243 (328)
                      ...+.++|+.|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHh
Q 020274          244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  323 (328)
Q Consensus       244 g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~  323 (328)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+.+|+    .+++++|.
T Consensus        91 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~----~~~~~~L~  166 (169)
T 2y1l_E           91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN----EDLAEILQ  166 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCC----HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999    99999998


Q ss_pred             hC
Q 020274          324 IL  325 (328)
Q Consensus       324 ~~  325 (328)
                      .+
T Consensus       167 ~~  168 (169)
T 2y1l_E          167 KL  168 (169)
T ss_dssp             TC
T ss_pred             Hc
Confidence            75

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=1.9e-33  Score=234.07  Aligned_cols=155  Identities=27%  Similarity=0.400  Sum_probs=151.3

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 020274          166 AKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA  245 (328)
Q Consensus       166 ~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  245 (328)
                      .|.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       246 ~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+    .+++++|..
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~----~~~~~~L~~  156 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY----RSVQQVIES  156 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc----HHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999    899988865

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.3e-33  Score=244.42  Aligned_cols=185  Identities=26%  Similarity=0.359  Sum_probs=174.4

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCC-CCCCCCcHHHHHHHhCCHHHHHHHHHCC--CCCCccCCCCCcHHHHHHH
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGK-ISTAKWRPLQTLTLSMQIRYMDMLLDGG--LDIDSVDKDGLTALHKAII  209 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--adi~~~d~~g~t~L~~A~~  209 (328)
                      ...++.|+..+..+.++.+++.+.+++... .+..|+||||+|+..|+.+++++|+++|  ++++.++..|.||||+|+.
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~  116 (228)
T 2dzn_A           37 RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG  116 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHH
Confidence            457889999999999999999998777776 7889999999999999999999999999  8999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCC-CCccccCCCCCcHHHHHHHcCCHHHHHHHH-H
Q 020274          210 GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN-VDVNVADNEGWTPLHIAIQSRNRDIAKVLL-I  287 (328)
Q Consensus       210 ~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~g-a~in~~d~~g~TpL~~A~~~g~~~iv~~Ll-~  287 (328)
                      .|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++++|+ +
T Consensus       117 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  196 (228)
T 2dzn_A          117 KKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK  196 (228)
T ss_dssp             TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999 999999999999999999999999999999 8


Q ss_pred             cCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          288 NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       288 ~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      +|++++.+|..|+|||++|+..       +++++|..
T Consensus       197 ~ga~~~~~~~~g~t~l~~A~~~-------~~~~~l~~  226 (228)
T 2dzn_A          197 YGAEYDLVDNKGAKAEDVALNE-------QVKKFFLN  226 (228)
T ss_dssp             HCCCSCCBCTTSCBGGGGCSST-------THHHHHHT
T ss_pred             cCCCCCccCCCCCcHHHHHHHH-------HHHHHHHh
Confidence            9999999999999999999653       56677664

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2.6e-33  Score=243.46  Aligned_cols=176  Identities=28%  Similarity=0.302  Sum_probs=164.5

Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCC-
Q 020274          146 PEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGA-  224 (328)
Q Consensus       146 ~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-  224 (328)
                      +.++.+++.|.+++.. .+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|. 
T Consensus         5 ~~i~~Ll~~g~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~   83 (223)
T 2f8y_A            5 AVISDFIYQGASLHNQ-TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT   83 (223)
T ss_dssp             CCEETTEETTCCTTCC-CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTS
T ss_pred             HHHHHHHHcCCCcccc-cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3445667777776543 36789999999999999999999999999999999999999999999999999999999987 


Q ss_pred             CCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q 020274          225 NPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD  304 (328)
Q Consensus       225 d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~  304 (328)
                      +++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus        84 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  163 (223)
T 2f8y_A           84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF  163 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCChHHHHHHHhhCC
Q 020274          305 MSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       305 ~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      +|+..|+    .+++++|....
T Consensus       164 ~A~~~~~----~~~v~~Ll~~g  181 (223)
T 2f8y_A          164 LAAREGS----YETAKVLLDHF  181 (223)
T ss_dssp             HHHHHTC----HHHHHHHHHTT
T ss_pred             HHHHcCC----HHHHHHHHHcC
Confidence            9999999    99999998764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=4.4e-34  Score=254.52  Aligned_cols=188  Identities=22%  Similarity=0.190  Sum_probs=170.0

Q ss_pred             HHHHHHHHhhChHHHHHHHh----cCCCCCCCC--CCCCCCcHHHHHH---HhCCHHHHHHHHHCCCC-----------C
Q 020274          134 EDLLKEVEQLLEPEEREILN----QNATPNLGK--ISTAKWRPLQTLT---LSMQIRYMDMLLDGGLD-----------I  193 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~----~g~~~~~~~--~~~~g~t~L~~A~---~~g~~~~v~~Ll~~gad-----------i  193 (328)
                      ..++.|++.|+.+.++.+++    .+.+.+...  .+..|+||||+|+   ..|+.+++++|++.|++           +
T Consensus         7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~   86 (260)
T 3jxi_A            7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF   86 (260)
T ss_dssp             HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence            56899999999997777776    888877553  2477999999999   67999999999998754           4


Q ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC--------------CCCChHHHHHHHcCCHHHHHHHHh---CC
Q 020274          194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKD--------------GDGATPLHYAVQVGAMQSVKLLIK---YN  256 (328)
Q Consensus       194 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d--------------~~g~tpLh~A~~~g~~~iv~~Ll~---~g  256 (328)
                      +..+..|+||||+|+..|+.++|++|+++|++++.++              ..|+||||+|+..|+.+++++|++   +|
T Consensus        87 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  166 (260)
T 3jxi_A           87 RDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ  166 (260)
T ss_dssp             CCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence            4455689999999999999999999999999999998              689999999999999999999999   99


Q ss_pred             CCccccCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCC-------CCCCCCCCcHHHHHHHcCCCCChHHHHH
Q 020274          257 VDVNVADNEGWTPLHIAIQSRN---------RDIAKVLLINGADK-------SRKTKDGKTALDMSLCYGRDFKSYDLAK  320 (328)
Q Consensus       257 a~in~~d~~g~TpL~~A~~~g~---------~~iv~~Ll~~gad~-------~~~d~~G~TpL~~A~~~g~~~~~~~i~~  320 (328)
                      ++++.+|..|+||||+|+..++         .+++++|+++|+++       +.+|..|.||||+|+.+|+    .++++
T Consensus       167 a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~----~~~v~  242 (260)
T 3jxi_A          167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK----IGIFQ  242 (260)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC----HHHHH
T ss_pred             CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC----HHHHH
Confidence            9999999999999999999888         79999999999999       7899999999999999999    99999


Q ss_pred             HHhhC
Q 020274          321 LLKIL  325 (328)
Q Consensus       321 lL~~~  325 (328)
                      +|...
T Consensus       243 ~Ll~~  247 (260)
T 3jxi_A          243 HIIRR  247 (260)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88753

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.4e-32  Score=253.65  Aligned_cols=188  Identities=25%  Similarity=0.283  Sum_probs=155.6

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCH
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKE  213 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~  213 (328)
                      ..|+.|+..+..+.++.|++.|.+++..  +..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus        60 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~  137 (351)
T 3utm_A           60 TPLHLAAGYNRVRIVQLLLQHGADVHAK--DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRV  137 (351)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence            4577788888888888888887766543  66788888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHCCCCCCCCC------------------------------------------------------CCCChHHHH
Q 020274          214 AVISHLLRKGANPHVKD------------------------------------------------------GDGATPLHY  239 (328)
Q Consensus       214 ~~v~~Ll~~g~d~~~~d------------------------------------------------------~~g~tpLh~  239 (328)
                      +++++|+++|++++..+                                                      ..|.||||+
T Consensus       138 ~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~  217 (351)
T 3utm_A          138 EVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHC  217 (351)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHH
T ss_pred             HHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHH
Confidence            88888888887776543                                                      345677777


Q ss_pred             HHHc---CCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChH
Q 020274          240 AVQV---GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSY  316 (328)
Q Consensus       240 A~~~---g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~  316 (328)
                      |+..   +..+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+    .
T Consensus       218 A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~----~  293 (351)
T 3utm_A          218 AVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGH----L  293 (351)
T ss_dssp             HHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC----H
T ss_pred             HHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc----H
Confidence            7777   44778888888888888899999999999999999999999999999999999999999999999998    9


Q ss_pred             HHHHHHhhCCC
Q 020274          317 DLAKLLKILPV  327 (328)
Q Consensus       317 ~i~~lL~~~~~  327 (328)
                      +++++|.....
T Consensus       294 ~~v~~Ll~~ga  304 (351)
T 3utm_A          294 QTCRLLLSYGS  304 (351)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHcCC
Confidence            99999987643

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=6.2e-33  Score=227.93  Aligned_cols=151  Identities=30%  Similarity=0.353  Sum_probs=146.6

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHH
Q 020274          168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQ  247 (328)
Q Consensus       168 ~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~  247 (328)
                      .|+||.|+..|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            589999999999999999999999887 5888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHh
Q 020274          248 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  323 (328)
Q Consensus       248 iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~  323 (328)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.+|+    .+++++|+
T Consensus        82 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----~~i~~~L~  153 (153)
T 1awc_B           82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN----EDLAEILQ  153 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHC
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC----HHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999    99999985

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.1e-32  Score=263.56  Aligned_cols=188  Identities=28%  Similarity=0.369  Sum_probs=168.2

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~  212 (328)
                      ...++.++..+..+.++.|++.|.+++..  +..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+
T Consensus       213 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~  290 (437)
T 1n11_A          213 YTPLHIAAKQNQVEVARSLLQYGGSANAE--SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGH  290 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            45678888888888888888888776554  6778899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020274          213 EAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK  292 (328)
Q Consensus       213 ~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~  292 (328)
                      .+++++|+++|++++.++..|+||||+|+..|+.++|++|+++|++++.++..|.||||+|+..|+.++|++|+++|+++
T Consensus       291 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~  370 (437)
T 1n11_A          291 VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP  370 (437)
T ss_dssp             HHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          293 SRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       293 ~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      +.+|..|+|||++|+..|+    .+++++|+...
T Consensus       371 ~~~~~~g~t~l~~A~~~g~----~~~~~~l~~~~  400 (437)
T 1n11_A          371 NEVSSDGTTPLAIAKRLGY----ISVTDVLKVVT  400 (437)
T ss_dssp             CCCCSSSCCHHHHHHHTTC----HHHHHHHHHHC
T ss_pred             CCCCCCCCCHHHHHHHcCc----HHHHHHHHhcc
Confidence            9999999999999999998    88888887654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.2e-32  Score=242.42  Aligned_cols=186  Identities=27%  Similarity=0.357  Sum_probs=146.7

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~  212 (328)
                      ...++.|+..+..+.++.|++.|.+++..  +..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus        40 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  117 (285)
T 1wdy_A           40 WTPLHNAVQMSREDIVELLLRHGADPVLR--KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGK  117 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTC
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCC
Confidence            45677777777777788888777766543  5677788888888888888888888888887777778888888888888


Q ss_pred             HHHHHHHHHCCCCCCCC----------CCCCChHHHHHHHcCCHHHHHHHHhC-CCCccccCCCCCcHHHHHHHcCC---
Q 020274          213 EAVISHLLRKGANPHVK----------DGDGATPLHYAVQVGAMQSVKLLIKY-NVDVNVADNEGWTPLHIAIQSRN---  278 (328)
Q Consensus       213 ~~~v~~Ll~~g~d~~~~----------d~~g~tpLh~A~~~g~~~iv~~Ll~~-ga~in~~d~~g~TpL~~A~~~g~---  278 (328)
                      .+++++|+++|++++.+          +..|.||||+|+..|+.+++++|+++ |++++..+..|.||||+|+..++   
T Consensus       118 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  197 (285)
T 1wdy_A          118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD  197 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTT
T ss_pred             HHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccch
Confidence            88888888888777766          66677888888888888888888876 88888888888888888888887   


Q ss_pred             -HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          279 -RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       279 -~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                       .+++++|+++|++++.++..|.||||+|+..|+    .+++++|..
T Consensus       198 ~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~  240 (285)
T 1wdy_A          198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKH----LGLVQRLLE  240 (285)
T ss_dssp             HHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC----HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC----HHHHHHHHh
Confidence             778888888888888888888888888888887    788887765

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=4.5e-34  Score=256.60  Aligned_cols=191  Identities=22%  Similarity=0.236  Sum_probs=170.2

Q ss_pred             ccHHHHHHHHhhChHHHHHHHhcC----CCCCCC--CCCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCC-------Cc
Q 020274          132 YEEDLLKEVEQLLEPEEREILNQN----ATPNLG--KISTAKWRPLQTLTLS---MQIRYMDMLLDGGLDI-------DS  195 (328)
Q Consensus       132 ~~~~l~~ai~~~~~~~v~~lL~~g----~~~~~~--~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~gadi-------~~  195 (328)
                      ....|+.|+..|..+.++.+++.+    .+.+..  ..+..|+||||+|+..   |+.+++++|+++|+++       +.
T Consensus        13 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~   92 (273)
T 2pnn_A           13 DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNA   92 (273)
T ss_dssp             CHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTC
T ss_pred             cchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhc
Confidence            346799999999999999998743    332211  2477899999999987   9999999999998653       22


Q ss_pred             ----cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC--------------CCChHHHHHHHcCCHHHHHHHHh---
Q 020274          196 ----VDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDG--------------DGATPLHYAVQVGAMQSVKLLIK---  254 (328)
Q Consensus       196 ----~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~--------------~g~tpLh~A~~~g~~~iv~~Ll~---  254 (328)
                          ++..|.||||+|+..|+.+++++|+++|++++.++.              .|.||||+|+..|+.+++++|++   
T Consensus        93 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  172 (273)
T 2pnn_A           93 SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW  172 (273)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             ccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                567899999999999999999999999999999987              79999999999999999999999   


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCC---------HHHHHHHHHcCCCCC-------CCCCCCCcHHHHHHHcCCCCChHHH
Q 020274          255 YNVDVNVADNEGWTPLHIAIQSRN---------RDIAKVLLINGADKS-------RKTKDGKTALDMSLCYGRDFKSYDL  318 (328)
Q Consensus       255 ~ga~in~~d~~g~TpL~~A~~~g~---------~~iv~~Ll~~gad~~-------~~d~~G~TpL~~A~~~g~~~~~~~i  318 (328)
                      +|++++.+|..|+||||+|+..|+         .+++++|+++|++++       .+|..|+||||+|+..|+    .++
T Consensus       173 ~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~----~~i  248 (273)
T 2pnn_A          173 QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK----IGV  248 (273)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC----HHH
T ss_pred             CCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh----HHH
Confidence            999999999999999999999998         899999999999997       589999999999999999    999


Q ss_pred             HHHHhhCC
Q 020274          319 AKLLKILP  326 (328)
Q Consensus       319 ~~lL~~~~  326 (328)
                      +++|....
T Consensus       249 v~~Ll~~g  256 (273)
T 2pnn_A          249 LAYILQRE  256 (273)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHCC
Confidence            99997643

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=8.3e-34  Score=256.31  Aligned_cols=185  Identities=24%  Similarity=0.288  Sum_probs=170.0

Q ss_pred             HHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCC-CCCccCCCCCcHHHHHH-----Hc
Q 020274          137 LKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGL-DIDSVDKDGLTALHKAI-----IG  210 (328)
Q Consensus       137 ~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-di~~~d~~g~t~L~~A~-----~~  210 (328)
                      +.++..+....++.++..+.+..++..+..|+||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+     ..
T Consensus        81 ~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~  160 (276)
T 4hbd_A           81 HPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQ  160 (276)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhh
Confidence            3456666777777777766554455568899999999999999999999999998 99999999999999999     66


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-cC
Q 020274          211 KKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI-NG  289 (328)
Q Consensus       211 g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~g  289 (328)
                      ++.+++++|++.|.+++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++ +|
T Consensus       161 ~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  240 (276)
T 4hbd_A          161 DDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS  240 (276)
T ss_dssp             HHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTT
T ss_pred             hhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          290 ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       290 ad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      ++++.+|..|.||||+|+.+|+    .+++++|...
T Consensus       241 ad~~~~d~~g~TpL~~A~~~g~----~~iv~~Ll~~  272 (276)
T 4hbd_A          241 CDISLTDRDGSTALMVALDAGQ----SEIASMLYSR  272 (276)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHHH
T ss_pred             CCCcCcCCCCCCHHHHHHHcCC----HHHHHHHHhc
Confidence            9999999999999999999999    9999988753

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=6e-33  Score=229.46  Aligned_cols=157  Identities=26%  Similarity=0.444  Sum_probs=149.7

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 020274          166 AKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA  245 (328)
Q Consensus       166 ~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  245 (328)
                      ...||||.|+..|+.+++++|++.|++++.++..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            45699999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD-KSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       246 ~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++ ++.++..|.||||+|+.+|+    .+++++|..
T Consensus        83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~----~~~~~~Ll~  158 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR----NEVVSLMQA  158 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC----HHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998 59999999999999999999    999999987


Q ss_pred             CCC
Q 020274          325 LPV  327 (328)
Q Consensus       325 ~~~  327 (328)
                      ...
T Consensus       159 ~GA  161 (162)
T 1ihb_A          159 NGA  161 (162)
T ss_dssp             TC-
T ss_pred             hCC
Confidence            654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=3.2e-32  Score=251.82  Aligned_cols=189  Identities=27%  Similarity=0.359  Sum_probs=146.5

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCc-----------------
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDS-----------------  195 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~-----------------  195 (328)
                      ...|+.|++.++.+.|+.||+.|++++... +..|+||||+|+..|+.++|++|+++|++++.                 
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~-~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  104 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGS  104 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCCccC-CCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhccc
Confidence            456999999999999999999999987652 34689999999999999999999999886543                 


Q ss_pred             ----------------cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC----------CCCCChHHHHHHHcCCHHHH
Q 020274          196 ----------------VDKDGLTALHKAIIGKKEAVISHLLRKGANPHVK----------DGDGATPLHYAVQVGAMQSV  249 (328)
Q Consensus       196 ----------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~----------d~~g~tpLh~A~~~g~~~iv  249 (328)
                                      ++..|.||||+|+..|+.+++++|+++|++++.+          +..|.||||+|+..|+.++|
T Consensus       105 ~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v  184 (337)
T 4g8k_A          105 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  184 (337)
T ss_dssp             HHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHH
T ss_pred             chhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHH
Confidence                            4455667777777777777777777776666533          23466677777666666666


Q ss_pred             HHHH--------------------------------------hCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CC
Q 020274          250 KLLI--------------------------------------KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN-GA  290 (328)
Q Consensus       250 ~~Ll--------------------------------------~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-ga  290 (328)
                      ++||                                      ++|++++.++..|+||||+|+..|+.+++++|+.+ |+
T Consensus       185 ~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~  264 (337)
T 4g8k_A          185 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI  264 (337)
T ss_dssp             HHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTC
T ss_pred             HHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCC
Confidence            5555                                      44555666677788888888888888888888875 78


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          291 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       291 d~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      +++.+|..|+||||+|+.+|+    .+++++|....
T Consensus       265 ~vn~~d~~G~TpL~~A~~~g~----~~iv~~Ll~~G  296 (337)
T 4g8k_A          265 EINDTDSDGKTALLLAVELKL----KKIAELLCKRG  296 (337)
T ss_dssp             CTTCBCTTSCBHHHHHHHTTC----HHHHHHHHTTS
T ss_pred             cccCcCCCCCCHHHHHHHcCC----HHHHHHHHHCC
Confidence            888888888899998888888    88888887654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.2e-32  Score=241.52  Aligned_cols=189  Identities=23%  Similarity=0.238  Sum_probs=178.8

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCcc----------CCCCCc
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSV----------DKDGLT  202 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~----------d~~g~t  202 (328)
                      ...++.|+..+..+.++.+++.|.+++..  +..|+||||+|+..|+.+++++|+++|++++..          +..|.|
T Consensus        73 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t  150 (285)
T 1wdy_A           73 ATPFLLAAIAGSVKLLKLFLSKGADVNEC--DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT  150 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCB--CTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCcc--CcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc
Confidence            45789999999999999999999887654  788999999999999999999999999999987          778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHHcCC----HHHHHHHHhCCCCccccCCCCCcHHHHHHHcC
Q 020274          203 ALHKAIIGKKEAVISHLLRK-GANPHVKDGDGATPLHYAVQVGA----MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR  277 (328)
Q Consensus       203 ~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpLh~A~~~g~----~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g  277 (328)
                      |||+|+..|+.+++++|+++ |++++.++..|.||||+|+..++    .+++++|+++|++++.++..|.||||+|+..|
T Consensus       151 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  230 (285)
T 1wdy_A          151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK  230 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            99999999999999999997 99999999999999999999999    99999999999999999999999999999999


Q ss_pred             CHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          278 NRDIAKVLLI-NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       278 ~~~iv~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      +.+++++|++ +|++++.+|..|+||||+|+..|+    .+++++|.....
T Consensus       231 ~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~----~~i~~~Ll~~Ga  277 (285)
T 1wdy_A          231 HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL----KKIAELLCKRGA  277 (285)
T ss_dssp             CHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHHSS
T ss_pred             CHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCc----HHHHHHHHHcCC
Confidence            9999999999 899999999999999999999999    999999987543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.7e-33  Score=255.29  Aligned_cols=185  Identities=17%  Similarity=0.103  Sum_probs=173.7

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~  212 (328)
                      ...++.|+..+..+.++.|++.|.+++..    +|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+
T Consensus        32 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~  107 (285)
T 3kea_A           32 HSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGN  107 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTGGGSCC----TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCC
Confidence            35689999999999999999999887754    48999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCC-ChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020274          213 EAVISHLLRKGANPHVKDGDG-ATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD  291 (328)
Q Consensus       213 ~~~v~~Ll~~g~d~~~~d~~g-~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  291 (328)
                      .+++++|+++|++++.++..| .||||+|+..|+.+++++|+++|+++... ..|.||||+|+..|+.+++++|+++|++
T Consensus       108 ~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad  186 (285)
T 3kea_A          108 MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTS  186 (285)
T ss_dssp             HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCC
Confidence            999999999999999999999 79999999999999999999999887332 2799999999999999999999999999


Q ss_pred             CCCCCCCCCcH-HHHHHHcCCCCChHHHHHHHhhCC
Q 020274          292 KSRKTKDGKTA-LDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       292 ~~~~d~~G~Tp-L~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      ++.++..|.|| ||+|+.+|+    .+++++|....
T Consensus       187 ~n~~~~~g~t~~L~~A~~~~~----~~~v~~Ll~~g  218 (285)
T 3kea_A          187 TNTNNSLLFIPDIKLAIDNKD----IEMLQALFKYD  218 (285)
T ss_dssp             TCTTCCCBCCTTHHHHHHHTC----HHHHHHHTTSC
T ss_pred             CCcccCCCCChHHHHHHHcCC----HHHHHHHHHcC
Confidence            99999999998 999999999    99999998764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=5.8e-32  Score=249.53  Aligned_cols=189  Identities=27%  Similarity=0.315  Sum_probs=173.8

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~  212 (328)
                      ...++.|+..|+.+.++.++... ..+.+..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  103 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGH  103 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTT-TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCC
Confidence            45799999999999999999862 23344458889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccC-----------------------------
Q 020274          213 EAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-----------------------------  263 (328)
Q Consensus       213 ~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d-----------------------------  263 (328)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+                             
T Consensus       104 ~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~  183 (351)
T 3utm_A          104 YEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLL  183 (351)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHH
Confidence            999999999999999999999999999999999999999999999987654                             


Q ss_pred             -------------------------CCCCcHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCCh
Q 020274          264 -------------------------NEGWTPLHIAIQS---RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS  315 (328)
Q Consensus       264 -------------------------~~g~TpL~~A~~~---g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~  315 (328)
                                               ..|.||||+|+..   +..+++++|+++|++++.++..|.||||+|+.+|+    
T Consensus       184 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~----  259 (351)
T 3utm_A          184 QAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH----  259 (351)
T ss_dssp             HHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC----
T ss_pred             HHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCC----
Confidence                                     4567999999998   55899999999999999999999999999999999    


Q ss_pred             HHHHHHHhhCC
Q 020274          316 YDLAKLLKILP  326 (328)
Q Consensus       316 ~~i~~lL~~~~  326 (328)
                      .+++++|...+
T Consensus       260 ~~~v~~Ll~~g  270 (351)
T 3utm_A          260 NDVMEVLHKHG  270 (351)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHCC
Confidence            89999998764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=1.3e-32  Score=230.04  Aligned_cols=154  Identities=25%  Similarity=0.366  Sum_probs=121.8

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCC-CCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 020274          167 KWRPLQTLTLSMQIRYMDMLLDGGLD-IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA  245 (328)
Q Consensus       167 g~t~L~~A~~~g~~~~v~~Ll~~gad-i~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  245 (328)
                      +.||||.|+..|+.++++.|++.|.+ ++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            45778888888888888888877766 67777778888888888888888888888888888777788888888888888


Q ss_pred             HHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       246 ~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+    .+++++|..
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----~~~~~~L~~  156 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY----RKVQQVIEN  156 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCc----HHHHHHHHH
Confidence            888888888888888888888888888888888888888888888888888888888888888877    777777754

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-32  Score=258.53  Aligned_cols=192  Identities=22%  Similarity=0.293  Sum_probs=179.1

Q ss_pred             cccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCC---CCCCccCCCCCcHHHHH
Q 020274          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGG---LDIDSVDKDGLTALHKA  207 (328)
Q Consensus       131 ~~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---adi~~~d~~g~t~L~~A  207 (328)
                      .....|+.|+..+..+.++.|++.|++++..  +..|+||||+|+..|+.+++++|+++|   ++++..+..|.||||+|
T Consensus       165 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A  242 (373)
T 2fo1_E          165 DENTPLMLAVLARRRRLVAYLMKAGADPTIY--NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIV  242 (373)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC--CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHH
T ss_pred             CCCCHHHHHHHcChHHHHHHHHHCCCCCccc--CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHH
Confidence            3456789999999999999999999988754  778999999999999999999999998   89999999999999999


Q ss_pred             HHcC---CHHHHHHHHHCCCCCCC--------CCCCCChHHHHHHHcCCHHHHHHHHhCC-CCccccCCCCCcHHHHHHH
Q 020274          208 IIGK---KEAVISHLLRKGANPHV--------KDGDGATPLHYAVQVGAMQSVKLLIKYN-VDVNVADNEGWTPLHIAIQ  275 (328)
Q Consensus       208 ~~~g---~~~~v~~Ll~~g~d~~~--------~d~~g~tpLh~A~~~g~~~iv~~Ll~~g-a~in~~d~~g~TpL~~A~~  275 (328)
                      +..+   +.+++++|+++|++++.        ++..|.||||+|+..|+.++|++|++++ ++++.+|..|.||||+|+.
T Consensus       243 ~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~  322 (373)
T 2fo1_E          243 AHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ  322 (373)
T ss_dssp             HHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHH
T ss_pred             HHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHH
Confidence            9988   89999999999999986        5778999999999999999999999885 9999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCCC
Q 020274          276 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPVE  328 (328)
Q Consensus       276 ~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~~  328 (328)
                      .|+.++|++|+++|++++.+|..|.||||+|+.+|+    .+|+++|.....+
T Consensus       323 ~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~----~~iv~~Ll~~~a~  371 (373)
T 2fo1_E          323 EGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH----HNIVDIFDRCRPE  371 (373)
T ss_dssp             HTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC----HHHHHHHHTTC--
T ss_pred             cCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCC----HHHHHHHHhcCcc
Confidence            999999999999999999999999999999999999    9999999987653

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.1e-32  Score=246.95  Aligned_cols=189  Identities=18%  Similarity=0.200  Sum_probs=155.3

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCC---------CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcH
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNAT---------PNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTA  203 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~---------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~  203 (328)
                      ...++.|+..|+...+..++..+..         ......+..|+||||+|+..|+.+++++|++.|++++.++..|.||
T Consensus        16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~   95 (285)
T 3d9h_A           16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSP   95 (285)
T ss_dssp             --------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCH
T ss_pred             HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            3457888899998888886654321         2244568899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHH
Q 020274          204 LHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAK  283 (328)
Q Consensus       204 L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~  283 (328)
                      ||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+ .|.||||+|+..|+.++++
T Consensus        96 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~  174 (285)
T 3d9h_A           96 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVN  174 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998654 4999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          284 VLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       284 ~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      +|+++|++++.++..|.||||+|+.+|+    .+++++|....
T Consensus       175 ~Ll~~g~~~~~~d~~g~t~L~~A~~~~~----~~~v~~Ll~~g  213 (285)
T 3d9h_A          175 SLIAYGGNIDHKISHLGTPLYLACENQQ----RACVKKLLESG  213 (285)
T ss_dssp             HHHHTTCCTTCCBTTTBCHHHHHHHTTC----HHHHHHHHHTT
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHHcCc----HHHHHHHHHCC
Confidence            9999999999999999999999999999    99999998764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=5.3e-32  Score=236.64  Aligned_cols=190  Identities=22%  Similarity=0.254  Sum_probs=173.9

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~  212 (328)
                      ...++.|+..+..+.++.+++.+.+++... +..|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+
T Consensus        43 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  121 (240)
T 3eu9_A           43 VTLLHWAAINNRIDLVKYYISKGAIVDQLG-GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGH  121 (240)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCB-TTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCcchhhc-CCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCH
Confidence            346889999999999999999988776432 4558999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC-HHHHHHHHhCCCCccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020274          213 EAVISHLLRKGANPHVKDGDGATPLHYAVQVGA-MQSVKLLIKYNVDVNVADN-EGWTPLHIAIQSRNRDIAKVLLINGA  290 (328)
Q Consensus       213 ~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~-~~iv~~Ll~~ga~in~~d~-~g~TpL~~A~~~g~~~iv~~Ll~~ga  290 (328)
                      .+++++|+++|++++.++..|.||||+|+..++ .+++++|++.|++++..+. .|.||||+|+..|+.+++++|+++|+
T Consensus       122 ~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  201 (240)
T 3eu9_A          122 TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA  201 (240)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999999999999997776 8899999999999999987 89999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          291 DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       291 d~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      +++.++..|.|||++|+.+|+    .+++++|.....
T Consensus       202 ~~~~~~~~g~t~l~~A~~~~~----~~~v~~L~~~~~  234 (240)
T 3eu9_A          202 NVDAQNIKGESALDLAKQRKN----VWMINHLQEARQ  234 (240)
T ss_dssp             CTTCBCTTSCBHHHHHHHTTC----HHHHHHHHHHC-
T ss_pred             CCCCcCCCCCCHHHHHHHcCc----HHHHHHHHHhhh
Confidence            999999999999999999999    999999987653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.3e-32  Score=246.71  Aligned_cols=177  Identities=23%  Similarity=0.222  Sum_probs=153.4

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCC--------------------
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLD--------------------  192 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad--------------------  192 (328)
                      ...|+.|+..+..+.++.|++.|++++..  +..|+||||+|+..|+.+++++|+++|++                    
T Consensus        46 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~--~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  123 (282)
T 1oy3_D           46 QTALHLAAILGEASTVEKLYAAGAGVLVA--ERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT  123 (282)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCC--CTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcch
Confidence            45789999999999999999999887754  77899999999999999999999998765                    


Q ss_pred             ---------------------------CCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CChHHHHHHHcC
Q 020274          193 ---------------------------IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGD-GATPLHYAVQVG  244 (328)
Q Consensus       193 ---------------------------i~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~-g~tpLh~A~~~g  244 (328)
                                                 ++.++..|.||||+|+..|+.+++++|+++|++++.++.. |+||||+|+..|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~  203 (282)
T 1oy3_D          124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ  203 (282)
T ss_dssp             --------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             hcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcC
Confidence                                       6778889999999999999999999999999999998864 999999999999


Q ss_pred             CHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 020274          245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR  311 (328)
Q Consensus       245 ~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~  311 (328)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|.....
T Consensus       204 ~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          204 AASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred             CHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence            9999999999999999999999999999999999999999999999999999999999999987654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.8e-32  Score=257.63  Aligned_cols=189  Identities=28%  Similarity=0.328  Sum_probs=177.1

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~  212 (328)
                      ...++.|+..+..+.++.+++.+.+++..  +..|+||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus       180 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~  257 (437)
T 1n11_A          180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSP--AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH  257 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHGGGTCCSCCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCC
Confidence            45688899999999999999998877653  6779999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020274          213 EAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK  292 (328)
Q Consensus       213 ~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~  292 (328)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.++|++|+++|+++
T Consensus       258 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~  337 (437)
T 1n11_A          258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV  337 (437)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT
T ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          293 SRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       293 ~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      +.++..|.||||+|+.+|+    .+++++|.....
T Consensus       338 n~~~~~g~t~L~~A~~~g~----~~iv~~Ll~~ga  368 (437)
T 1n11_A          338 NAKTKLGYSPLHQAAQQGH----TDIVTLLLKNGA  368 (437)
T ss_dssp             TCCCTTSCCHHHHHHHTTC----HHHHHHHHHTTC
T ss_pred             CCCCCCCCCHHHHHHHCCh----HHHHHHHHHCcC
Confidence            9999999999999999999    999999987643

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.1e-31  Score=234.87  Aligned_cols=161  Identities=22%  Similarity=0.220  Sum_probs=148.1

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-----CCCCCCCChHHHH
Q 020274          166 AKWRPLQTLTLSMQIRYMDMLLDG-GLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANP-----HVKDGDGATPLHY  239 (328)
Q Consensus       166 ~g~t~L~~A~~~g~~~~v~~Ll~~-gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-----~~~d~~g~tpLh~  239 (328)
                      .|+||||+|+..|+.+++++|++. |++++.++..|+||||+|+..|+.+++++|+++|+++     +.++..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            488999999999999999999997 9999999999999999999999999999999999887     6778899999999


Q ss_pred             HHHcCCHHHHHHHHhCCCCccccCC-------------CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 020274          240 AVQVGAMQSVKLLIKYNVDVNVADN-------------EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS  306 (328)
Q Consensus       240 A~~~g~~~iv~~Ll~~ga~in~~d~-------------~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A  306 (328)
                      |+..|+.+++++|+++|++++..+.             .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A  161 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL  161 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999999998866             799999999999999999999999999999999999999999


Q ss_pred             HHcCCCCChHHHHHHHhhCC
Q 020274          307 LCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       307 ~~~g~~~~~~~i~~lL~~~~  326 (328)
                      +..|+.....+++++|....
T Consensus       162 ~~~~~~~~~~~i~~~Ll~~g  181 (232)
T 2rfa_A          162 ILQPNKTFACQMYNLLLSYD  181 (232)
T ss_dssp             HTCSCHHHHHHHHHHHHHTT
T ss_pred             HHcCChHHHHHHHHHHHhcC
Confidence            99999222223338887654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=3.6e-32  Score=229.16  Aligned_cols=157  Identities=27%  Similarity=0.304  Sum_probs=108.0

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 020274          166 AKWRPLQTLTLSMQIRYMDMLLDG-GLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG  244 (328)
Q Consensus       166 ~g~t~L~~A~~~g~~~~v~~Ll~~-gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  244 (328)
                      .+.++||.|+..|+.+++++|++. +.+++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            455667777777777777777765 4556666667777777777777777777777777777777777777777777777


Q ss_pred             CHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       245 ~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++    .+++++|..
T Consensus        84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~----~~~~~~L~~  159 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR----ELLRERAEK  159 (179)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHH----HHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHH----HHHHHHHHH
Confidence            7777777777777777777777777777777777777777777777777777777777777766665    666666665


Q ss_pred             CC
Q 020274          325 LP  326 (328)
Q Consensus       325 ~~  326 (328)
                      ..
T Consensus       160 ~g  161 (179)
T 3f6q_A          160 MG  161 (179)
T ss_dssp             TT
T ss_pred             hh
Confidence            43

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=2.7e-32  Score=226.61  Aligned_cols=158  Identities=32%  Similarity=0.420  Sum_probs=148.8

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHH-CCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 020274          164 STAKWRPLQTLTLSMQIRYMDMLLD-GGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ  242 (328)
Q Consensus       164 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~  242 (328)
                      +..+.||||.|+..|+.++++.|++ .+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            5678899999999999999999998 567788888899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHH
Q 020274          243 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL  322 (328)
Q Consensus       243 ~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL  322 (328)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+    .+|+++|
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~----~~i~~~L  159 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GD----TDIQDLL  159 (165)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TC----HHHHHHH
T ss_pred             cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CC----hHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999877 66    7999999


Q ss_pred             hhCC
Q 020274          323 KILP  326 (328)
Q Consensus       323 ~~~~  326 (328)
                      ....
T Consensus       160 ~~~g  163 (165)
T 3twr_A          160 RGDA  163 (165)
T ss_dssp             HTC-
T ss_pred             hhcc
Confidence            8754

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-31  Score=242.80  Aligned_cols=184  Identities=25%  Similarity=0.326  Sum_probs=164.3

Q ss_pred             HHHhhChHHHHHHHhcCCCCCCC-------CCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC
Q 020274          139 EVEQLLEPEEREILNQNATPNLG-------KISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK  211 (328)
Q Consensus       139 ai~~~~~~~v~~lL~~g~~~~~~-------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g  211 (328)
                      +++++..+.++.++.........       ..+..+.||||.|+..|+.++|++|++.|++++.++..|.||||+|+..|
T Consensus         5 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g   84 (299)
T 1s70_B            5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD   84 (299)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            45666667777777765543321       12346789999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCC---------------------------
Q 020274          212 KEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADN---------------------------  264 (328)
Q Consensus       212 ~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~---------------------------  264 (328)
                      +.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++..+.                           
T Consensus        85 ~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~  164 (299)
T 1s70_B           85 NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV  164 (299)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCC
Confidence            99999999999999999999999999999999999999999999999876553                           


Q ss_pred             ---------------------------------CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 020274          265 ---------------------------------EGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR  311 (328)
Q Consensus       265 ---------------------------------~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~  311 (328)
                                                       .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~  244 (299)
T 1s70_B          165 DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK  244 (299)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCC
Confidence                                             47788999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHhhCC
Q 020274          312 DFKSYDLAKLLKILP  326 (328)
Q Consensus       312 ~~~~~~i~~lL~~~~  326 (328)
                          .+++++|....
T Consensus       245 ----~~~v~~Ll~~g  255 (299)
T 1s70_B          245 ----EEACRILVENL  255 (299)
T ss_dssp             ----HHHHHHHHHTT
T ss_pred             ----HHHHHHHHHcC
Confidence                99999998764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.98  E-value=1.1e-31  Score=220.56  Aligned_cols=153  Identities=29%  Similarity=0.452  Sum_probs=146.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 020274          167 KWRPLQTLTLSMQIRYMDMLLDG-GLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA  245 (328)
Q Consensus       167 g~t~L~~A~~~g~~~~v~~Ll~~-gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  245 (328)
                      +.||||.|+..|+.++++.|++. +.+++.++..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            45899999999999999999998 45899999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       246 ~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      .+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++ ++++.+|..|.||||+|+..|+    .+++++|...
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~----~~~v~~Ll~~  155 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGA----QDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCC----HHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCc----HHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999 9999999999999999999999    9999998753

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.98  E-value=4.6e-31  Score=230.67  Aligned_cols=187  Identities=24%  Similarity=0.285  Sum_probs=174.4

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCC-CCCcHHHHHHHcCC
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDK-DGLTALHKAIIGKK  212 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~-~g~t~L~~A~~~g~  212 (328)
                      ..++.|+..+..+.++.+++.|.+++.  .+..|.||||+|+..|+.+++++|++.|++++.... .|.||||+|+..|+
T Consensus        11 ~~l~~A~~~g~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~   88 (240)
T 3eu9_A           11 WDIVKATQYGIYERCRELVEAGYDVRQ--PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH   88 (240)
T ss_dssp             CCHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred             hHHHHHHHcCChHHHHHHHHcCCCcCC--CCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence            348899999999999999999987654  477899999999999999999999999999886654 49999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCC-HHHHHHHHHcCCC
Q 020274          213 EAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN-RDIAKVLLINGAD  291 (328)
Q Consensus       213 ~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~-~~iv~~Ll~~gad  291 (328)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++ .+++++|+++|++
T Consensus        89 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~  168 (240)
T 3eu9_A           89 LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS  168 (240)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999997776 8999999999999


Q ss_pred             CCCCCC-CCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          292 KSRKTK-DGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       292 ~~~~d~-~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      ++..+. .|.||||+|+.+|+    .+++++|....
T Consensus       169 ~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g  200 (240)
T 3eu9_A          169 VNLGDKYHKNTALHWAVLAGN----TTVISLLLEAG  200 (240)
T ss_dssp             TTCCCTTTCCCHHHHHHHHTC----HHHHHHHHHHT
T ss_pred             cchhhccCCCcHHHHHHHcCC----HHHHHHHHHcC
Confidence            999997 89999999999999    99999987653

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.98  E-value=8.7e-32  Score=225.02  Aligned_cols=167  Identities=21%  Similarity=0.265  Sum_probs=153.1

Q ss_pred             HHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHH
Q 020274          135 DLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEA  214 (328)
Q Consensus       135 ~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~  214 (328)
                      .++.|+..++.+.++.+++.+... ....+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+
T Consensus         5 ~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   83 (172)
T 3v30_A            5 SIHQLAAQGELDQLKEHLRKGDNL-VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTD   83 (172)
T ss_dssp             CHHHHHHTTCHHHHHHHHTTCSGG-GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hHHHHHHcCCHHHHHHHHHcCccc-ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHH
Confidence            478999999999999999987652 3445789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 020274          215 VISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR  294 (328)
Q Consensus       215 ~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~  294 (328)
                      ++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|+++..
T Consensus        84 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~  163 (172)
T 3v30_A           84 IVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ  163 (172)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcH
Q 020274          295 KTKDGKTA  302 (328)
Q Consensus       295 ~d~~G~Tp  302 (328)
                      ++..|.||
T Consensus       164 ~~~~~~~p  171 (172)
T 3v30_A          164 SNLVPADP  171 (172)
T ss_dssp             C-------
T ss_pred             ccCCCCCC
Confidence            99999887

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.98  E-value=1.2e-31  Score=243.21  Aligned_cols=175  Identities=21%  Similarity=0.205  Sum_probs=160.5

Q ss_pred             HHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHH
Q 020274          140 VEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHL  219 (328)
Q Consensus       140 i~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~L  219 (328)
                      +.......++++|..+ +  ++..+..|+||||+|+..|+.+++++|+++|++++.++  |.||||+|+..|+.+++++|
T Consensus         7 i~~~~~~~v~~lL~~~-~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~L   81 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK-D--TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKIL   81 (285)
T ss_dssp             GGGCCHHHHHHHHHST-T--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHH
T ss_pred             HHhcCHHHHHHHHHhC-C--CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHH
Confidence            4456677888888765 3  45568899999999999999999999999999999884  89999999999999999999


Q ss_pred             HHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCC-CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 020274          220 LRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEG-WTPLHIAIQSRNRDIAKVLLINGADKSRKTKD  298 (328)
Q Consensus       220 l~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g-~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~  298 (328)
                      +++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..| .||||+|+..|+.+++++|+++|+++... ..
T Consensus        82 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~  160 (285)
T 3kea_A           82 LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AI  160 (285)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-ST
T ss_pred             HHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cC
Confidence            99999999999999999999999999999999999999999999999 79999999999999999999999987333 28


Q ss_pred             CCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          299 GKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       299 G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      |.||||+|+.+|+    .+++++|..
T Consensus       161 g~t~L~~A~~~g~----~~~v~~Ll~  182 (285)
T 3kea_A          161 LLSCIHITIKNGH----VDMMILLLD  182 (285)
T ss_dssp             HHHHHHHHHHTTC----HHHHHHHHH
T ss_pred             CccHHHHHHHcCh----HHHHHHHHH
Confidence            9999999999999    999999875

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=9.9e-32  Score=252.75  Aligned_cols=191  Identities=23%  Similarity=0.266  Sum_probs=174.0

Q ss_pred             cccHHHHHHHHhhChHHHHHHH--------hcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCc
Q 020274          131 KYEEDLLKEVEQLLEPEEREIL--------NQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLT  202 (328)
Q Consensus       131 ~~~~~l~~ai~~~~~~~v~~lL--------~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t  202 (328)
                      .....|+.|+..+..+.++.++        +.|.+++..  +..|+||||+|+..|+.++|++|+++|++++.++..|.|
T Consensus       124 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t  201 (373)
T 2fo1_E          124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM--DCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERS  201 (373)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCC
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC--CCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCC
Confidence            3446788888888876555554        788877654  788999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCC---CCCCCCCCCCChHHHHHHHcC---CHHHHHHHHhCCCCccc--------cCCCCCc
Q 020274          203 ALHKAIIGKKEAVISHLLRKG---ANPHVKDGDGATPLHYAVQVG---AMQSVKLLIKYNVDVNV--------ADNEGWT  268 (328)
Q Consensus       203 ~L~~A~~~g~~~~v~~Ll~~g---~d~~~~d~~g~tpLh~A~~~g---~~~iv~~Ll~~ga~in~--------~d~~g~T  268 (328)
                      |||+|+..|+.+++++|+++|   ++++.++..|.||||+|+..+   +.+++++|+++|++++.        .+..|.|
T Consensus       202 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t  281 (373)
T 2fo1_E          202 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRT  281 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred             HHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCC
Confidence            999999999999999999998   899999999999999999998   89999999999999986        5778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          269 PLHIAIQSRNRDIAKVLLING-ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       269 pL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      |||+|+..|+.++|++|+++| ++++.+|..|.||||+|+.+|+    .+++++|.....
T Consensus       282 ~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~----~~iv~~Ll~~ga  337 (373)
T 2fo1_E          282 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGR----IEVVMYLIQQGA  337 (373)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTC----HHHHHHHHHTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCC----HHHHHHHHHcCC
Confidence            999999999999999999886 9999999999999999999999    999999987643

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=4.5e-31  Score=218.16  Aligned_cols=158  Identities=22%  Similarity=0.293  Sum_probs=148.7

Q ss_pred             cccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHc
Q 020274          131 KYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIG  210 (328)
Q Consensus       131 ~~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~  210 (328)
                      .+...++.|+..+..+.++.+++.|.+++.  .+..|+||||+|+. |+.+++++|+++|++++.++..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNA--QNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTC--CCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccc--cCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            456789999999999999999999887754  47889999999999 999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020274          211 KKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD-VNVADNEGWTPLHIAIQSRNRDIAKVLLING  289 (328)
Q Consensus       211 g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~-in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  289 (328)
                      |+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|
T Consensus        81 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999998 6999999999999999999999999999999


Q ss_pred             CC
Q 020274          290 AD  291 (328)
Q Consensus       290 ad  291 (328)
                      ||
T Consensus       161 Ad  162 (162)
T 1ihb_A          161 AG  162 (162)
T ss_dssp             --
T ss_pred             CC
Confidence            86

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=2.6e-32  Score=252.31  Aligned_cols=172  Identities=23%  Similarity=0.223  Sum_probs=152.3

Q ss_pred             HHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC---HH
Q 020274          138 KEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK---EA  214 (328)
Q Consensus       138 ~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~---~~  214 (328)
                      .++..+..+.++.+++.|.+++.. .+..|+||||+|+..|+.++|++|+++|++++.++..|+||||+|+..|+   .+
T Consensus       103 ~a~~~~~~~~~~~l~~~g~dvn~~-~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~  181 (327)
T 1sw6_A          103 VSFDSLLQEVNDAFPNTQLNLNIP-VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSG  181 (327)
T ss_dssp             -CHHHHHHHHHHHCTTSCCCSCSC-CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTT
T ss_pred             HHHHhhHHHHHHHHHhcCCCcccc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHH
Confidence            345556666777778888887762 37889999999999999999999999999999999999999999999998   68


Q ss_pred             HHHHHHHCC-CCCCCCCCCCChHHHHHHH----cCCHHHHHHHHhCCC--------------------------------
Q 020274          215 VISHLLRKG-ANPHVKDGDGATPLHYAVQ----VGAMQSVKLLIKYNV--------------------------------  257 (328)
Q Consensus       215 ~v~~Ll~~g-~d~~~~d~~g~tpLh~A~~----~g~~~iv~~Ll~~ga--------------------------------  257 (328)
                      +++.|++.+ ++++.++..|+||||+|+.    .|+.+++++|++.++                                
T Consensus       182 ~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~  261 (327)
T 1sw6_A          182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS  261 (327)
T ss_dssp             CHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CH
T ss_pred             HHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCCh
Confidence            888888886 7799999999999999999    899999999998743                                


Q ss_pred             -------------CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q 020274          258 -------------DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG  310 (328)
Q Consensus       258 -------------~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g  310 (328)
                                   +++.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+.+|
T Consensus       262 L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          262 ILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             hHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence                         57888899999999999999999999999999999999999999999998765

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=5e-30  Score=237.02  Aligned_cols=186  Identities=23%  Similarity=0.290  Sum_probs=169.2

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCC--------CCCCCCcHHHHHHHhCCHHHHHHHHH-CCCCCCccCCCCCcH
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGK--------ISTAKWRPLQTLTLSMQIRYMDMLLD-GGLDIDSVDKDGLTA  203 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~--------~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gadi~~~d~~g~t~  203 (328)
                      ...++.++..+..+.++.+++.|.+++...        .+..|.||||+|+..|+.++|++||+ .|++++.++..|.|+
T Consensus       126 ~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~  205 (337)
T 4g8k_A          126 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNA  205 (337)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcH
Confidence            346889999999999999999999887543        34578999999999999999999996 799999999999999


Q ss_pred             HHHHHHcCC----HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhC-CCCccccCCCCCcHHHHHHHcCC
Q 020274          204 LHKAIIGKK----EAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY-NVDVNVADNEGWTPLHIAIQSRN  278 (328)
Q Consensus       204 L~~A~~~g~----~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-ga~in~~d~~g~TpL~~A~~~g~  278 (328)
                      |+.++..+.    ..++++|+++|++++.++..|+||||+|+..|+.+++++|+.. |++++.+|..|+||||+|+..|+
T Consensus       206 l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~  285 (337)
T 4g8k_A          206 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKL  285 (337)
T ss_dssp             HHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTC
T ss_pred             HHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCC
Confidence            999886543    4688999999999999999999999999999999999999986 89999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       279 ~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      .++|++||++||+++.+     ||||+|+.+|+    .+|+++|.....
T Consensus       286 ~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~----~~iv~~Ll~~GA  325 (337)
T 4g8k_A          286 KKIAELLCKRGASTDCG-----DLVMTARRNYD----HSLVKVLLSHGA  325 (337)
T ss_dssp             HHHHHHHHTTSCSSTTC-----CHHHHHHHTTC----HHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCCCCC-----CHHHHHHHcCC----HHHHHHHHHCcC
Confidence            99999999999999764     59999999999    999999987653

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.4e-31  Score=235.01  Aligned_cols=160  Identities=24%  Similarity=0.301  Sum_probs=147.8

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHCCC----CCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHH
Q 020274          163 ISTAKWRPLQTLTLSMQIRYMDMLLDGGL----DIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLH  238 (328)
Q Consensus       163 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga----di~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh  238 (328)
                      .+..|+||||+|+..|+.+++++|++.+.    +++.++..|.||||+|+..|+.+++++|+++|++++.++..|+||||
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   83 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLH   83 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHH
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            47889999999999999999999998765    79999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCC------ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCC
Q 020274          239 YAVQVGAMQSVKLLIKYNVD------VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTK-DGKTALDMSLCYGR  311 (328)
Q Consensus       239 ~A~~~g~~~iv~~Ll~~ga~------in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~-~G~TpL~~A~~~g~  311 (328)
                      +|+..|+.+++++|+++|++      ++..+..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~  163 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN  163 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            99999999999999999876      577888999999999999999999999999999999998 99999999999999


Q ss_pred             CCChHHHHHHHhhCC
Q 020274          312 DFKSYDLAKLLKILP  326 (328)
Q Consensus       312 ~~~~~~i~~lL~~~~  326 (328)
                          .+++++|....
T Consensus       164 ----~~~v~~Ll~~g  174 (236)
T 1ikn_D          164 ----PDLVSLLLKCG  174 (236)
T ss_dssp             ----HHHHHHHHTTT
T ss_pred             ----HHHHHHHHHcC
Confidence                99999998764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=6.2e-30  Score=213.58  Aligned_cols=156  Identities=29%  Similarity=0.484  Sum_probs=148.8

Q ss_pred             ccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC
Q 020274          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK  211 (328)
Q Consensus       132 ~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g  211 (328)
                      ....++.|+..|..+.++.+++.|.+++.  .+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   91 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMANGADVNA--EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG   91 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ccchHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            34679999999999999999999988765  4788999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020274          212 KEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING  289 (328)
Q Consensus       212 ~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  289 (328)
                      +.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus        92 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           92 HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999876

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=3e-30  Score=217.35  Aligned_cols=166  Identities=19%  Similarity=0.231  Sum_probs=155.4

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~  212 (328)
                      ...++.|+..++.+.++.+++.+.. ++...+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   84 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTEN-DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGH   84 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTS-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcc-cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC
Confidence            3468999999999999999998533 234458899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020274          213 EAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK  292 (328)
Q Consensus       213 ~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~  292 (328)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..++.+++++|+++|+++
T Consensus        85 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A           85 RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNL  164 (179)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 020274          293 SRKTKDG  299 (328)
Q Consensus       293 ~~~d~~G  299 (328)
                      +..+..+
T Consensus       165 ~~~~~~~  171 (179)
T 3f6q_A          165 NRIPYKD  171 (179)
T ss_dssp             SCBCCCC
T ss_pred             ccCCccc
Confidence            9887665

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=9.4e-31  Score=244.43  Aligned_cols=163  Identities=21%  Similarity=0.231  Sum_probs=134.0

Q ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC-----------
Q 020274          160 LGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHV-----------  228 (328)
Q Consensus       160 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~-----------  228 (328)
                      ....+..|+||||+|+..|+.++|++|++.|++++.++..|.||||+|+..|+.++|++|+++|++++.           
T Consensus        13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~   92 (364)
T 3ljn_A           13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAV   92 (364)
T ss_dssp             ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHH
Confidence            344578899999999999999999999999999999999999999999999999999999999987765           


Q ss_pred             -----------------------------------------CCCCCChHHHHHHHcC--CHHHHHHHHhCCCCccccCCC
Q 020274          229 -----------------------------------------KDGDGATPLHYAVQVG--AMQSVKLLIKYNVDVNVADNE  265 (328)
Q Consensus       229 -----------------------------------------~d~~g~tpLh~A~~~g--~~~iv~~Ll~~ga~in~~d~~  265 (328)
                                                               ++..|.||||+|+..|  +.+++++|+++|++++.+|..
T Consensus        93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~  172 (364)
T 3ljn_A           93 MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA  172 (364)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT
T ss_pred             HcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC
Confidence                                                     4556777777777777  777777777777777777777


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          266 GWTPLHIAIQSRNRDIAKVLLINGAD-----KSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       266 g~TpL~~A~~~g~~~iv~~Ll~~gad-----~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      |.||||+|+..|+.+++++|+++|++     ++.++..|.||||+|+.+|+    .+++++|....
T Consensus       173 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~g  234 (364)
T 3ljn_A          173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINW----EDVAMRFVEMG  234 (364)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTC----HHHHHHHHTTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCC----HHHHHHHHHcC
Confidence            77777777777777777777777777     77777777777777777777    77777776543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=1.1e-29  Score=208.54  Aligned_cols=150  Identities=27%  Similarity=0.335  Sum_probs=144.6

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~  212 (328)
                      ...++.|+..+..+.++.+++.|.+.+   .+..|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            467899999999999999999998765   37789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 020274          213 EAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL  285 (328)
Q Consensus       213 ~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~L  285 (328)
                      .+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=1.2e-29  Score=216.74  Aligned_cols=163  Identities=22%  Similarity=0.243  Sum_probs=151.4

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCC-CCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 020274          164 STAKWRPLQTLTLSMQIRYMDMLLDGGL-DIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ  242 (328)
Q Consensus       164 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga-di~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~  242 (328)
                      ...+.||||.|+..|+.++++.|+..+. +++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGA   81 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            3568899999999999999999998776 999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHH-hCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCCCC-ChHHHH
Q 020274          243 VGAMQSVKLLI-KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING-ADKSRKTKDGKTALDMSLCYGRDF-KSYDLA  319 (328)
Q Consensus       243 ~g~~~iv~~Ll-~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-ad~~~~d~~G~TpL~~A~~~g~~~-~~~~i~  319 (328)
                      .|+.+++++|+ ..+++++..+..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+|+..++.. ...+++
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            99999999999 668899999999999999999999999999999999 999999999999999999988622 237899


Q ss_pred             HHHhhCC
Q 020274          320 KLLKILP  326 (328)
Q Consensus       320 ~lL~~~~  326 (328)
                      ++|....
T Consensus       162 ~~Ll~~g  168 (201)
T 3hra_A          162 KLLMENG  168 (201)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHCC
Confidence            9987754

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.97  E-value=5.6e-31  Score=217.20  Aligned_cols=145  Identities=21%  Similarity=0.266  Sum_probs=121.8

Q ss_pred             CCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCh-HHHH
Q 020274          161 GKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGAT-PLHY  239 (328)
Q Consensus       161 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~t-pLh~  239 (328)
                      ...+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+ .|+.+++++|+++|++++.++..|+| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            344678999999999999999999999999999999999999999985 99999999999999999999999999 9999


Q ss_pred             HHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 020274          240 AVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMS  306 (328)
Q Consensus       240 A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A  306 (328)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||.+-+
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999998844

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=9.6e-30  Score=211.55  Aligned_cols=158  Identities=22%  Similarity=0.243  Sum_probs=149.9

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCH
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKE  213 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~  213 (328)
                      ..++.|+..|..+.++.+++.+.+++.  .+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.
T Consensus         5 t~L~~A~~~g~~~~v~~ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   82 (167)
T 3v31_A            5 LSVHQLAAQGEMLYLATRIEQENVINH--TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYT   82 (167)
T ss_dssp             CCHHHHHHTTCHHHHHHHHHHSSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             chHHHHHHCCCHHHHHHHHHcCCCcCC--CCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCH
Confidence            357899999999999999999877554  478999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 020274          214 AVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS  293 (328)
Q Consensus       214 ~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  293 (328)
                      +++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++++++.
T Consensus        83 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A           83 DIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             HHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887653

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=1.9e-30  Score=230.66  Aligned_cols=154  Identities=22%  Similarity=0.218  Sum_probs=142.5

Q ss_pred             CCcHHHHHHHhCCHH----HHHHHHHCCCCCCc----cCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCC------
Q 020274          167 KWRPLQTLTLSMQIR----YMDMLLDGGLDIDS----VDKDGLTALHKAIIG---KKEAVISHLLRKGANPHVK------  229 (328)
Q Consensus       167 g~t~L~~A~~~g~~~----~v~~Ll~~gadi~~----~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~d~~~~------  229 (328)
                      |+||||.|+..|+.+    ++++|++.|++++.    ++..|+||||+|+..   |+.+++++|+++|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            789999999999997    66778889999998    899999999999999   9999999999999887633      


Q ss_pred             -----CCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCC-------------CCcHHHHHHHcCCHHHHHHHHH---c
Q 020274          230 -----DGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-------------GWTPLHIAIQSRNRDIAKVLLI---N  288 (328)
Q Consensus       230 -----d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~-------------g~TpL~~A~~~g~~~iv~~Ll~---~  288 (328)
                           |..|.||||+|+..|+.+++++|+++|++++..+..             |.||||+|+..|+.+++++|++   +
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence                 368999999999999999999999999999999886             9999999999999999999999   9


Q ss_pred             CCCCCCCCCCCCcHHHHHHH--cCCCCChHH-------HHHHHhh
Q 020274          289 GADKSRKTKDGKTALDMSLC--YGRDFKSYD-------LAKLLKI  324 (328)
Q Consensus       289 gad~~~~d~~G~TpL~~A~~--~g~~~~~~~-------i~~lL~~  324 (328)
                      |++++.+|..|+||||+|+.  .++    .+       ++++|..
T Consensus       162 ga~~n~~d~~g~TpLh~A~~~~~~~----~~~~~~~~~iv~~Ll~  202 (256)
T 2etb_A          162 PASLEATDSLGNTVLHALVMIADNS----PENSALVIHMYDGLLQ  202 (256)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSC----HHHHHHHHHHHHHHHH
T ss_pred             CCCcCccCCCCCCHHHHHHHcccCC----chhhHHHHHHHHHHHH
Confidence            99999999999999999999  555    66       8888865

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=8e-30  Score=211.60  Aligned_cols=157  Identities=26%  Similarity=0.311  Sum_probs=146.0

Q ss_pred             ccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC
Q 020274          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK  211 (328)
Q Consensus       132 ~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g  211 (328)
                      ....++.|+..++.+.++.+++.+. .+....+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|
T Consensus         8 ~~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   86 (165)
T 3twr_A            8 ADRQLLEAAKAGDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYG   86 (165)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTT-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHcCC-CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcC
Confidence            3467999999999999999998643 445556788999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 020274          212 KEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA  290 (328)
Q Consensus       212 ~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  290 (328)
                      +.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+. |+.+++++|+++||
T Consensus        87 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A           87 HYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             cHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999877 99999999999986

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=1.2e-30  Score=230.38  Aligned_cols=155  Identities=25%  Similarity=0.319  Sum_probs=106.6

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcC
Q 020274          165 TAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG  244 (328)
Q Consensus       165 ~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g  244 (328)
                      ..|.||||.|+..++.++++.|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            45889999999999999999999999888854 66889999999999999999999999999988889999999999999


Q ss_pred             CHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHH--HHcCCCCChHHHHHH
Q 020274          245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGK-TALDMS--LCYGRDFKSYDLAKL  321 (328)
Q Consensus       245 ~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~-TpL~~A--~~~g~~~~~~~i~~l  321 (328)
                      +.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|. ||||+|  +..|+    .+++++
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~----~~~~~~  157 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGY----TQCSQF  157 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTC----CCHHHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhcc----HHHHHH
Confidence            99999999999999999998999999999999999999999999999998888777 999988  67777    677777


Q ss_pred             Hhh
Q 020274          322 LKI  324 (328)
Q Consensus       322 L~~  324 (328)
                      |..
T Consensus       158 Ll~  160 (239)
T 1ycs_B          158 LYG  160 (239)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=4.6e-29  Score=204.94  Aligned_cols=153  Identities=25%  Similarity=0.309  Sum_probs=145.1

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~  212 (328)
                      ...++.|+..++.+.++.+++. ...+....+..|+||||+ +..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             chHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            4578999999999999999998 544555668899999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020274          213 EAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN  288 (328)
Q Consensus       213 ~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  288 (328)
                      .+++++|+++|++++.++..|+||||+|+..|+.+++++|+++ ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999 99999999999999999999999999999975

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=6.2e-30  Score=206.06  Aligned_cols=133  Identities=24%  Similarity=0.365  Sum_probs=112.4

Q ss_pred             CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CChH
Q 020274          158 PNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGD-GATP  236 (328)
Q Consensus       158 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~-g~tp  236 (328)
                      ++++..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+. |+.+++++|+++|++++.++.. |+||
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP   81 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence            3445557788888888888888888888888888888888888888888888 8888888888888888888888 8888


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020274          237 LHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD  291 (328)
Q Consensus       237 Lh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  291 (328)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            8888888888888888888888888888888888888888888888888888875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=3.1e-29  Score=213.36  Aligned_cols=155  Identities=21%  Similarity=0.192  Sum_probs=148.2

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~  212 (328)
                      ...++.|+..+..+.++.+++.+.+++.  .+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus        36 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  113 (192)
T 2rfm_A           36 RTPLMVACMLGMENAIDKLVENFDKLED--KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY  113 (192)
T ss_dssp             CCHHHHHHHHTCGGGHHHHHHHHCCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhcccccc--ccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence            3568999999999999999999987665  47789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020274          213 EAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING  289 (328)
Q Consensus       213 ~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  289 (328)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       114 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          114 SEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=2e-30  Score=221.00  Aligned_cols=152  Identities=15%  Similarity=0.152  Sum_probs=125.4

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCCCCccC-CCCCcHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCChHHHHHH
Q 020274          167 KWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD-KDGLTALHKAIIGKKE----AVISHLLRKGANPHVKDGDGATPLHYAV  241 (328)
Q Consensus       167 g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~d~~~~d~~g~tpLh~A~  241 (328)
                      ++++|+.|+..|+.+.++.++..+.  +.++ ..|+||||+|+..++.    +++++|+++|++++.++..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            4678888888888888888887664  4444 6688899998888875    4888888889998888888899999888


Q ss_pred             HcCC------HHHHHHHHhCCCCccccCCCCC-cHHHHHHHcC-----CHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHH
Q 020274          242 QVGA------MQSVKLLIKYNVDVNVADNEGW-TPLHIAIQSR-----NRDIAKVLLI-NGADKSRKTKDGKTALDMSLC  308 (328)
Q Consensus       242 ~~g~------~~iv~~Ll~~ga~in~~d~~g~-TpL~~A~~~g-----~~~iv~~Ll~-~gad~~~~d~~G~TpL~~A~~  308 (328)
                      ..++      .+++++|+++|+++|.+|..|+ ||||+|+..+     +.+++++|++ +|++++.+|..|+||||+|+.
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~  163 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR  163 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence            8876      5788889999999998888888 8999888844     3568888888 899999999999999999988


Q ss_pred             cCCCCChHHHHHHHhh
Q 020274          309 YGRDFKSYDLAKLLKI  324 (328)
Q Consensus       309 ~g~~~~~~~i~~lL~~  324 (328)
                      .|+    .+++++|..
T Consensus       164 ~~~----~~~v~~L~~  175 (186)
T 3t8k_A          164 CQK----PIALKMMED  175 (186)
T ss_dssp             TTC----HHHHHHHHH
T ss_pred             cCC----HHHHHHHHH
Confidence            888    777777764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.1e-30  Score=230.56  Aligned_cols=175  Identities=17%  Similarity=0.198  Sum_probs=138.5

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCH
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKE  213 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~  213 (328)
                      ..|+.++..+..+.++.+++.|.+++.   +..+.||||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.
T Consensus         7 t~L~~a~~~~~~~~~~~ll~~g~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~   83 (239)
T 1ycs_B            7 VSLPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHT   83 (239)
T ss_dssp             ---------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCH
T ss_pred             ccCchhhhhhhHHHHHHHhccCCCccc---CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            457788889999999999999999886   46789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCC-cHHHHH--HHcCCHHHHHHHHHcCC
Q 020274          214 AVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGW-TPLHIA--IQSRNRDIAKVLLINGA  290 (328)
Q Consensus       214 ~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~-TpL~~A--~~~g~~~iv~~Ll~~ga  290 (328)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|. ||||+|  +..|+.+++++|+++|+
T Consensus        84 ~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a  163 (239)
T 1ycs_B           84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  163 (239)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999998877 999999  78899999999999999


Q ss_pred             CCCCC---------CCCCCcHHHHHHHcCC
Q 020274          291 DKSRK---------TKDGKTALDMSLCYGR  311 (328)
Q Consensus       291 d~~~~---------d~~G~TpL~~A~~~g~  311 (328)
                      +++..         +..+.+|+++++..|.
T Consensus       164 ~~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          164 KMGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             cccccccceEEEEeccCCCCCCcccccCCC
Confidence            98876         6678899998888775

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=2.9e-29  Score=225.20  Aligned_cols=172  Identities=17%  Similarity=0.211  Sum_probs=145.1

Q ss_pred             cHHHHHHHHh---hChHHHHHHHhcCCCC---------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCC--
Q 020274          133 EEDLLKEVEQ---LLEPEEREILNQNATP---------NLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDK--  198 (328)
Q Consensus       133 ~~~l~~ai~~---~~~~~v~~lL~~g~~~---------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~--  198 (328)
                      ...|+.|+..   +..+.++.|++.|.++         .....+..|+||||+|+..|+.+++++|+++|++++.++.  
T Consensus        55 ~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~  134 (273)
T 2pnn_A           55 KTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD  134 (273)
T ss_dssp             CCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSG
T ss_pred             CCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccc
Confidence            4567888875   9999999999988543         2333467899999999999999999999999999999987  


Q ss_pred             ------------CCCcHHHHHHHcCCHHHHHHHHH---CCCCCCCCCCCCChHHHHHHHcCC---------HHHHHHHHh
Q 020274          199 ------------DGLTALHKAIIGKKEAVISHLLR---KGANPHVKDGDGATPLHYAVQVGA---------MQSVKLLIK  254 (328)
Q Consensus       199 ------------~g~t~L~~A~~~g~~~~v~~Ll~---~g~d~~~~d~~g~tpLh~A~~~g~---------~~iv~~Ll~  254 (328)
                                  .|.||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..|+         .+++++|++
T Consensus       135 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~  214 (273)
T 2pnn_A          135 FFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI  214 (273)
T ss_dssp             GGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHH
Confidence                        79999999999999999999999   999999999999999999999998         899999999


Q ss_pred             CCCCcc-------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHH
Q 020274          255 YNVDVN-------VADNEGWTPLHIAIQSRNRDIAKVLLINGA-DKSRKTKDGKTALD  304 (328)
Q Consensus       255 ~ga~in-------~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-d~~~~d~~G~TpL~  304 (328)
                      +|++++       .+|..|.||||+|+..|+.+++++|+++|| |+......+.+|-+
T Consensus       215 ~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          215 LGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred             hhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhccC
Confidence            999996       589999999999999999999999999999 89888887777644

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.2e-30  Score=229.43  Aligned_cols=164  Identities=21%  Similarity=0.259  Sum_probs=131.4

Q ss_pred             HHHHHhcCCCCCCC-CCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC
Q 020274          148 EREILNQNATPNLG-KISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANP  226 (328)
Q Consensus       148 v~~lL~~g~~~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~  226 (328)
                      ++.+|+++.+++.. ..+..+.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            35677777777643 34566788899999999999999999989999888888999999999999999999999999999


Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccC-CCCCcHHHHH--HHcCCHHHHHHHHHcCCCC-----------
Q 020274          227 HVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIA--IQSRNRDIAKVLLINGADK-----------  292 (328)
Q Consensus       227 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d-~~g~TpL~~A--~~~g~~~iv~~Ll~~gad~-----------  292 (328)
                      +.+|..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+|  +..|+.+++++|+++|+++           
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l  160 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYAL  160 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEES
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHH
Confidence            8888889999999999999999999999999998886 5889999998  8888899999998876654           


Q ss_pred             ---------------------CCCCCCCCcHHHHHHHcCC
Q 020274          293 ---------------------SRKTKDGKTALDMSLCYGR  311 (328)
Q Consensus       293 ---------------------~~~d~~G~TpL~~A~~~g~  311 (328)
                                           +.+|..|+||||+|+.+|+
T Consensus       161 ~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~  200 (229)
T 2vge_A          161 WDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQ  200 (229)
T ss_dssp             SCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTE
T ss_pred             HHHhhccccccCccccccccccccCCCcccHHHHHHHcCC
Confidence                                 3456678888888888887

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=4.2e-29  Score=201.19  Aligned_cols=132  Identities=23%  Similarity=0.268  Sum_probs=127.9

Q ss_pred             CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCC-CCc
Q 020274          190 GLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-GWT  268 (328)
Q Consensus       190 gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~-g~T  268 (328)
                      +++++.++..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+. |+.+++++|+++|++++.++.. |.|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            57899999999999999999999999999999999999999999999999999 9999999999999999999999 999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          269 PLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       269 pL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      |||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+    .+++++|....
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~----~~~~~~Ll~~G  134 (136)
T 1d9s_A           81 PVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGH----RDIARYLHAAT  134 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTC----HHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC----HHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999998    99999997653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=5.8e-32  Score=237.87  Aligned_cols=152  Identities=18%  Similarity=0.148  Sum_probs=138.7

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~  212 (328)
                      ...++.|+..+..+.++.+++.|.+++.  .+..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus        22 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~   99 (229)
T 2vge_A           22 LVLLLDAALTGELEVVQQAVKEMNDPSQ--PNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCND   99 (229)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHSSCTTC--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence            3568999999999999999999988765  47889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCC-CCCChHHHHH--HHcCCHHHHHHHHhCCCC-------------------------------
Q 020274          213 EAVISHLLRKGANPHVKD-GDGATPLHYA--VQVGAMQSVKLLIKYNVD-------------------------------  258 (328)
Q Consensus       213 ~~~v~~Ll~~g~d~~~~d-~~g~tpLh~A--~~~g~~~iv~~Ll~~ga~-------------------------------  258 (328)
                      .+++++|+++|++++.++ ..|+||||+|  +..|+.+++++|+++|++                               
T Consensus       100 ~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~  179 (229)
T 2vge_A          100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESV  179 (229)
T ss_dssp             HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEE
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccccc
Confidence            999999999999999986 6999999999  999999999999986543                               


Q ss_pred             -ccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 020274          259 -VNVADNEGWTPLHIAIQSRNRDIAKVLL  286 (328)
Q Consensus       259 -in~~d~~g~TpL~~A~~~g~~~iv~~Ll  286 (328)
                       ++.+|..|+||||+|+..|+.++|+.++
T Consensus       180 ~~~~~d~~G~TpL~~A~~~g~~~~v~~~~  208 (229)
T 2vge_A          180 TVLRRDGPEETDWWWAALHGQEGYVPRNY  208 (229)
T ss_dssp             EEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred             cccccCCCcccHHHHHHHcCCcceeehhh
Confidence             3456778999999999999999887654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.96  E-value=5.3e-28  Score=190.51  Aligned_cols=126  Identities=37%  Similarity=0.570  Sum_probs=118.7

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 020274          166 AKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA  245 (328)
Q Consensus       166 ~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  245 (328)
                      +|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020274          246 MQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD  291 (328)
Q Consensus       246 ~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  291 (328)
                      .+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|||
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999986

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=1.2e-28  Score=219.15  Aligned_cols=162  Identities=17%  Similarity=0.208  Sum_probs=147.1

Q ss_pred             cHHHHHHH---HhhChHHHHHHHhcCCC---------CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccC---
Q 020274          133 EEDLLKEV---EQLLEPEEREILNQNAT---------PNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD---  197 (328)
Q Consensus       133 ~~~l~~ai---~~~~~~~v~~lL~~g~~---------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d---  197 (328)
                      ...|+.|+   ..+..+.++.|++.|.+         .+....+..|+||||+|+..|+.++|++|+++|++++.++   
T Consensus        47 ~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~  126 (260)
T 3jxi_A           47 KTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR  126 (260)
T ss_dssp             CCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEEC
T ss_pred             CcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccc
Confidence            34677777   67899999999998754         3445556689999999999999999999999999999998   


Q ss_pred             -----------CCCCcHHHHHHHcCCHHHHHHHHH---CCCCCCCCCCCCChHHHHHHHcCC---------HHHHHHHHh
Q 020274          198 -----------KDGLTALHKAIIGKKEAVISHLLR---KGANPHVKDGDGATPLHYAVQVGA---------MQSVKLLIK  254 (328)
Q Consensus       198 -----------~~g~t~L~~A~~~g~~~~v~~Ll~---~g~d~~~~d~~g~tpLh~A~~~g~---------~~iv~~Ll~  254 (328)
                                 ..|.||||+|+..|+.+++++|++   +|++++.+|..|+||||+|+..++         .+++++|++
T Consensus       127 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~  206 (260)
T 3jxi_A          127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI  206 (260)
T ss_dssp             CCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHH
T ss_pred             ccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence                       689999999999999999999999   999999999999999999999888         799999999


Q ss_pred             CCCCc-------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 020274          255 YNVDV-------NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR  294 (328)
Q Consensus       255 ~ga~i-------n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~  294 (328)
                      +|+++       +.+|..|.||||+|+..|+.+++++|+++|+++..
T Consensus       207 ~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          207 KCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             HHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             hCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence            99999       77999999999999999999999999999987543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=7.4e-28  Score=193.84  Aligned_cols=126  Identities=29%  Similarity=0.393  Sum_probs=101.1

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 020274          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV  243 (328)
Q Consensus       164 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~  243 (328)
                      ...+.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34567888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020274          244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING  289 (328)
Q Consensus       244 g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  289 (328)
                      |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            8888888888888888888888888888888888888888887765

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=7.9e-29  Score=228.95  Aligned_cols=181  Identities=19%  Similarity=0.178  Sum_probs=153.6

Q ss_pred             hChHHHHHHHhcCCCCCCCCC---------------CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCc-cCCCCCcHHHH
Q 020274          143 LLEPEEREILNQNATPNLGKI---------------STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDS-VDKDGLTALHK  206 (328)
Q Consensus       143 ~~~~~v~~lL~~g~~~~~~~~---------------~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~-~d~~g~t~L~~  206 (328)
                      |..+.++.+|++|.+++....               .....+.+|+|+..+..+++++|++.|+++|. ++..|+||||+
T Consensus        58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~  137 (327)
T 1sw6_A           58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHW  137 (327)
T ss_dssp             HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHH
T ss_pred             chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHH
Confidence            788899999999988765211               11122345888988999999999999999999 89999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC---HHHHHHHHhCC-CCccccCCCCCcHHHHHHH----cCC
Q 020274          207 AIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA---MQSVKLLIKYN-VDVNVADNEGWTPLHIAIQ----SRN  278 (328)
Q Consensus       207 A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~---~~iv~~Ll~~g-a~in~~d~~g~TpL~~A~~----~g~  278 (328)
                      |+..|+.++|++|+++|++++.++..|+||||+|+..|+   .++++.|++++ ++++.+|..|+||||+|+.    .|+
T Consensus       138 Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~  217 (327)
T 1sw6_A          138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC  217 (327)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccccc
Confidence            999999999999999999999999999999999999998   78888888886 7899999999999999999    899


Q ss_pred             HHHHHHHHHcCC---------------------------------------------CCCCCCCCCCcHHHHHHHcCCCC
Q 020274          279 RDIAKVLLINGA---------------------------------------------DKSRKTKDGKTALDMSLCYGRDF  313 (328)
Q Consensus       279 ~~iv~~Ll~~ga---------------------------------------------d~~~~d~~G~TpL~~A~~~g~~~  313 (328)
                      .+++++|++.++                                             +++.+|..|+||||+|+.+|+  
T Consensus       218 ~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~--  295 (327)
T 1sw6_A          218 SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGN--  295 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCC--
Confidence            999999998743                                             688899999999999999999  


Q ss_pred             ChHHHHHHHhhCCC
Q 020274          314 KSYDLAKLLKILPV  327 (328)
Q Consensus       314 ~~~~i~~lL~~~~~  327 (328)
                        .+++++|.....
T Consensus       296 --~~~v~~Ll~~Ga  307 (327)
T 1sw6_A          296 --ISIVDALLDYGA  307 (327)
T ss_dssp             --HHHHHHHHHTTC
T ss_pred             --HHHHHHHHHcCC
Confidence              999999987653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=4.8e-29  Score=212.43  Aligned_cols=159  Identities=15%  Similarity=0.080  Sum_probs=142.7

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCCCCCC-CCCCcHHHHHHHhCCH----HHHHHHHHCCCCCCccCCCCCcHHHHHH
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNLGKIS-TAKWRPLQTLTLSMQI----RYMDMLLDGGLDIDSVDKDGLTALHKAI  208 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~-~~g~t~L~~A~~~g~~----~~v~~Ll~~gadi~~~d~~g~t~L~~A~  208 (328)
                      ..++.+++.|+.+.++.++..+.+.    .+ ..|+||||+|+..|+.    +++++|+++|+++|.++..|+||||+|+
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~----~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYED----KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSC----HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCccc----ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            4689999999999999999877432    23 6799999999999975    5999999999999999999999999999


Q ss_pred             HcCC------HHHHHHHHHCCCCCCCCCCCCC-hHHHHHHHcC-----CHHHHHHHHh-CCCCccccCCCCCcHHHHHHH
Q 020274          209 IGKK------EAVISHLLRKGANPHVKDGDGA-TPLHYAVQVG-----AMQSVKLLIK-YNVDVNVADNEGWTPLHIAIQ  275 (328)
Q Consensus       209 ~~g~------~~~v~~Ll~~g~d~~~~d~~g~-tpLh~A~~~g-----~~~iv~~Ll~-~ga~in~~d~~g~TpL~~A~~  275 (328)
                      ..++      .+++++|+++|++++.+|..|+ ||||+|+..+     +.+++++|++ +|++++.+|..|.||||+|+.
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~  163 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR  163 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence            9887      6889999999999999999999 9999999954     4579999999 999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCC
Q 020274          276 SRNRDIAKVLLINGADKSRKT  296 (328)
Q Consensus       276 ~g~~~iv~~Ll~~gad~~~~d  296 (328)
                      .|+.++|++|+....+.+.++
T Consensus       164 ~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          164 CQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCC
T ss_pred             cCCHHHHHHHHHHHHHHhccc
Confidence            999999999998766555554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=2e-28  Score=197.19  Aligned_cols=130  Identities=32%  Similarity=0.388  Sum_probs=92.4

Q ss_pred             CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcH
Q 020274          190 GLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTP  269 (328)
Q Consensus       190 gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~Tp  269 (328)
                      |+|+ .++..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            4556 566677777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          270 LHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       270 L~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+.    .+++++|..
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~----~~~l~~l~~  130 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESM----KSLLLLPEK  130 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHH----HHHHSCC--
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccH----HHHHhhccc
Confidence            777777777777777777777777777777777777766554    566555544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=3.5e-27  Score=189.86  Aligned_cols=125  Identities=38%  Similarity=0.511  Sum_probs=120.4

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHc
Q 020274          197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS  276 (328)
Q Consensus       197 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~  276 (328)
                      ...+.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          277 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       277 g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      |+.+++++|+++|++++.+|..|.||||+|+.+|+    .+++++|..+
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~----~~~~~~Ll~~  135 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGN----EDLAEILQKL  135 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHC
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCC----HHHHHHHHHc
Confidence            99999999999999999999999999999999999    9999999865

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=6.9e-27  Score=210.86  Aligned_cols=155  Identities=24%  Similarity=0.288  Sum_probs=146.8

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCC-CCCCCCCCCCCCcHHHHHH-----HhCCHHHHHHHHHCCCCCCccCCCCCcHHHH
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNA-TPNLGKISTAKWRPLQTLT-----LSMQIRYMDMLLDGGLDIDSVDKDGLTALHK  206 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~-~~~~~~~~~~g~t~L~~A~-----~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~  206 (328)
                      ...++.|+..+..+.++.|++.|. +++.  .+..|+||||+|+     ..++.+++++|++.|.+++..+..|.||||+
T Consensus       112 ~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~--~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~  189 (276)
T 4hbd_A          112 NTALHYSVSHANFPVVQQLLDSGVCKVDK--QNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALML  189 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTSCCCTTC--CCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCcCCC--CCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            457899999999999999999997 5554  4788999999999     6789999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHh-CCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 020274          207 AIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIK-YNVDVNVADNEGWTPLHIAIQSRNRDIAKVL  285 (328)
Q Consensus       207 A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~-~ga~in~~d~~g~TpL~~A~~~g~~~iv~~L  285 (328)
                      |+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++ +|++++.+|..|.||||+|+..|+.+++++|
T Consensus       190 A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~L  269 (276)
T 4hbd_A          190 AVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML  269 (276)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999 8999999999999999999999999999999


Q ss_pred             HHcC
Q 020274          286 LING  289 (328)
Q Consensus       286 l~~g  289 (328)
                      ++++
T Consensus       270 l~~~  273 (276)
T 4hbd_A          270 YSRM  273 (276)
T ss_dssp             HHHC
T ss_pred             Hhcc
Confidence            9874

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.94  E-value=6.6e-27  Score=213.90  Aligned_cols=139  Identities=21%  Similarity=0.236  Sum_probs=126.3

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHCCCCCCc------cCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHH
Q 020274          167 KWRPLQTLTLSMQIRYMDMLLDGGLDIDS------VDKDGLTALHKAIIG---KKEAVISHLLRKGANPHVKDGDGATPL  237 (328)
Q Consensus       167 g~t~L~~A~~~g~~~~v~~Ll~~gadi~~------~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~d~~~~d~~g~tpL  237 (328)
                      ..++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   ++.+++++|+++|++++.+|..|+|||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpL  230 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL  230 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHH
Confidence            34679999999999999999999999998      688999999999997   899999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q 020274          238 HYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR  311 (328)
Q Consensus       238 h~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~  311 (328)
                      |+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++      .|.||||+|+.+|+
T Consensus       231 h~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          231 HYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC-------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999987      58899999999987

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=2.4e-26  Score=181.00  Aligned_cols=125  Identities=38%  Similarity=0.576  Sum_probs=120.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCC
Q 020274          199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRN  278 (328)
Q Consensus       199 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~  278 (328)
                      +|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       279 ~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      .+++++|+++|++++.+|..|.|||++|+..|+    .+++++|.....
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~----~~~~~~Ll~~Ga  125 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH----LEVVKLLLEAGA  125 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCc----HHHHHHHHHcCC
Confidence            999999999999999999999999999999998    999999987543

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=2.4e-27  Score=190.86  Aligned_cols=129  Identities=23%  Similarity=0.276  Sum_probs=119.9

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 020274          163 ISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ  242 (328)
Q Consensus       163 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~  242 (328)
                      .+..|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~   85 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK   85 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020274          243 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD  291 (328)
Q Consensus       243 ~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  291 (328)
                      .|+.+++++|+++|++++.+|..|.||||+|+..+..+++++|.+.+..
T Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           86 NGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            9999999999999999999999999999999999999999888776543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=8e-27  Score=192.20  Aligned_cols=129  Identities=25%  Similarity=0.309  Sum_probs=120.2

Q ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCc-HHHH
Q 020274          194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWT-PLHI  272 (328)
Q Consensus       194 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~T-pL~~  272 (328)
                      +..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+ .|+.+++++|+++|++++.++..|.| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            455678999999999999999999999999999999999999999985 99999999999999999999999999 9999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          273 AIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       273 A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+.+|+    .+++++|.....
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~----~~~v~~Ll~~ga  135 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH----RDVARYLRAAAG  135 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTC----HHHHHHHSSCC-
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCH----HHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999    999999987643

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=9.3e-27  Score=196.98  Aligned_cols=140  Identities=23%  Similarity=0.261  Sum_probs=130.3

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHH
Q 020274          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKD-GDGATPLHYAVQ  242 (328)
Q Consensus       164 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d-~~g~tpLh~A~~  242 (328)
                      +..|+||||+|+..|+.++++.|++ |++++.++..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            3467899999999999999999999 99999999999999999999999999999999999999998 899999999999


Q ss_pred             cCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHH
Q 020274          243 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL  322 (328)
Q Consensus       243 ~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL  322 (328)
                      .|+.+++++|+++|++++.+|..|.||||+|+..++.                 ..+.+||++|+..|+    .+++++|
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~----~~i~~~L  178 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGL----EKVINVL  178 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHH----HHHHHHH
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCH----HHHHHHH
Confidence            9999999999999999999999999999999875432                 456799999999998    9999999


Q ss_pred             hhC
Q 020274          323 KIL  325 (328)
Q Consensus       323 ~~~  325 (328)
                      ...
T Consensus       179 ~~~  181 (183)
T 3deo_A          179 EGQ  181 (183)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=1.5e-26  Score=204.91  Aligned_cols=138  Identities=24%  Similarity=0.278  Sum_probs=128.9

Q ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCChHHHHHHHc
Q 020274          165 TAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKD-GDGATPLHYAVQV  243 (328)
Q Consensus       165 ~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d-~~g~tpLh~A~~~  243 (328)
                      ..|.||||+|+..|+.+++++|++ |++++.++..|+||||+|+..|+.++|++|+++|++++.++ ..|+||||+|+..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            468899999999999999999999 99999999999999999999999999999999999999998 7899999999999


Q ss_pred             CCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHh
Q 020274          244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  323 (328)
Q Consensus       244 g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~  323 (328)
                      |+.+++++|+++|++++.+|..|.||||+|+..++                 ...+.|||++|+..|+    .+++++|.
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~----~~iv~~L~  180 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGL----EKVINVLE  180 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHH----HHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcCh----HHHHHHHH
Confidence            99999999999999999999999999999986322                 2567899999999998    89999987


Q ss_pred             h
Q 020274          324 I  324 (328)
Q Consensus       324 ~  324 (328)
                      .
T Consensus       181 ~  181 (244)
T 3ui2_A          181 G  181 (244)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.94  E-value=6e-27  Score=203.86  Aligned_cols=137  Identities=19%  Similarity=0.224  Sum_probs=117.5

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCChHHHHHHH
Q 020274          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRK-GANPHVKDGDGATPLHYAVQ  242 (328)
Q Consensus       164 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~d~~~~d~~g~tpLh~A~~  242 (328)
                      +..|.||||+|+..|+.+++++|++.|++++.++..|+||||+||..|+.+++++|+++ |++++.+|..|+||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q 020274          243 VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGK  300 (328)
Q Consensus       243 ~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~  300 (328)
                      .|+.+++++|+++|++++.+|..|.||||+|+..++.++++.|+.+|++...++..|.
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence            9999999999999999999999999999999999999999999999999988876653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=8.5e-26  Score=178.44  Aligned_cols=110  Identities=27%  Similarity=0.378  Sum_probs=90.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHc
Q 020274          197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQS  276 (328)
Q Consensus       197 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~  276 (328)
                      +..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34567888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHH
Q 020274          277 RNRDIAKVLLINGADKSRKTKDGKTALDMS  306 (328)
Q Consensus       277 g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A  306 (328)
                      |+.+++++|+++|++++.+|..|.||||+|
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A  113 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEAT  113 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence            888888888888888888888888888888

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=8.2e-26  Score=178.54  Aligned_cols=112  Identities=23%  Similarity=0.244  Sum_probs=106.7

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 020274          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV  243 (328)
Q Consensus       164 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~  243 (328)
                      +..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCCccccCCCCCcHHHHHHH
Q 020274          244 GAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ  275 (328)
Q Consensus       244 g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~  275 (328)
                      |+.+++++|+++|++++.+|..|.||||+|+.
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            99999999999999999999999999999943

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=1e-25  Score=196.06  Aligned_cols=126  Identities=25%  Similarity=0.238  Sum_probs=116.8

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhC-CCCccccCCCCCcHHHHHH
Q 020274          196 VDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY-NVDVNVADNEGWTPLHIAI  274 (328)
Q Consensus       196 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-ga~in~~d~~g~TpL~~A~  274 (328)
                      .+..|.||||+||..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|+
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~  148 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAA  148 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999 9999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          275 QSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       275 ~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      ..|+.+++++|+++|++++.+|..|.|||++|+..|+    .++++.|...
T Consensus       149 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~----~~~l~~l~~~  195 (222)
T 3ehr_A          149 WKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAAC----ASLLKKKQGT  195 (222)
T ss_dssp             HHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHH----HHHHC-----
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhH----HHHHHHHhcc
Confidence            9999999999999999999999999999999999887    8888877654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=1.4e-26  Score=217.95  Aligned_cols=162  Identities=10%  Similarity=0.015  Sum_probs=132.1

Q ss_pred             hhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCC---CccCCCCCcHHHHHHHcCCHHHHHH
Q 020274          142 QLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDI---DSVDKDGLTALHKAIIGKKEAVISH  218 (328)
Q Consensus       142 ~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi---~~~d~~g~t~L~~A~~~g~~~~v~~  218 (328)
                      .+..+.++.++..|.         .++||||+|+..|+.++|++|++.|+..   +..+..|.||||+|+..|+.++|++
T Consensus        76 ~~~~~~~~~l~~~g~---------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~  146 (376)
T 2aja_A           76 RNAKQLWSDAHKKGI---------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNR  146 (376)
T ss_dssp             TTCTTHHHHHHHHTC---------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCCHHHHHHHHHcCC---------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHH
Confidence            345556666666654         3459999999999999999999998832   2334457899999999999999999


Q ss_pred             HHHCCCCC---CCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccc--cCCCCCcHHHHHH-HcCCHHHHHHHHHcCCCC
Q 020274          219 LLRKGANP---HVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV--ADNEGWTPLHIAI-QSRNRDIAKVLLINGADK  292 (328)
Q Consensus       219 Ll~~g~d~---~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~--~d~~g~TpL~~A~-~~g~~~iv~~Ll~~gad~  292 (328)
                      |+++|+++   +..+.. .||||+|+..|+.++|++|+++|++++.  .+..|.||||+|+ ..|+.++|++|+++|++ 
T Consensus       147 Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-  224 (376)
T 2aja_A          147 LCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-  224 (376)
T ss_dssp             HHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-
T ss_pred             HHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-
Confidence            99999752   222223 8999999999999999999999999887  8888999999999 99999999999998853 


Q ss_pred             CCCCCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          293 SRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       293 ~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                            |.|||++|+.+|+    .+++++|..
T Consensus       225 ------~~taL~~Aa~~g~----~evv~lL~~  246 (376)
T 2aja_A          225 ------LAYAEIHEFEYGE----KYVNPFIAR  246 (376)
T ss_dssp             ------HHHHHHCTTTTTT----TTHHHHHHH
T ss_pred             ------cchHHHHHHHCCC----HHHHHHHHh
Confidence                  8899999999998    778888865

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.91  E-value=1e-26  Score=218.88  Aligned_cols=181  Identities=9%  Similarity=0.045  Sum_probs=150.8

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCC-CCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCC---CccCCCCCcHHHHHHH
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNL-GKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDI---DSVDKDGLTALHKAII  209 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi---~~~d~~g~t~L~~A~~  209 (328)
                      ..++.|+..|..+.++.+++.|..... ...+..|.||||+|+..|+.++|++|+++|+++   +..+.. .||||+||.
T Consensus        94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~  172 (376)
T 2aja_A           94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAE  172 (376)
T ss_dssp             HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHH
Confidence            679999999999999999999874322 234557889999999999999999999999762   222222 899999999


Q ss_pred             cCCHHHHHHHHHCCCCCCC--CCCCCChHHHHHH-HcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 020274          210 GKKEAVISHLLRKGANPHV--KDGDGATPLHYAV-QVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL  286 (328)
Q Consensus       210 ~g~~~~v~~Ll~~g~d~~~--~d~~g~tpLh~A~-~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll  286 (328)
                      .|+.++|++|+++|++++.  ++..|.||||+|+ ..|+.++|++|+++|++       |.||||+|+..|+.+++++|+
T Consensus       173 ~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~  245 (376)
T 2aja_A          173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKYVNPFIA  245 (376)
T ss_dssp             TTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTTHHHHHH
T ss_pred             CCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHHHHHHHH
Confidence            9999999999999999887  8888999999999 99999999999998742       889999999999999999999


Q ss_pred             HcCCCCC-------------------------------------------------------------CCCCCCCcHHHH
Q 020274          287 INGADKS-------------------------------------------------------------RKTKDGKTALDM  305 (328)
Q Consensus       287 ~~gad~~-------------------------------------------------------------~~d~~G~TpL~~  305 (328)
                      ++|++++                                                             .....+.|||++
T Consensus       246 ~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~  325 (376)
T 2aja_A          246 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL  325 (376)
T ss_dssp             HHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHH
T ss_pred             hcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHH
Confidence            8775431                                                             112346689999


Q ss_pred             HHHcCCCCChHHHHHHHhhCC
Q 020274          306 SLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       306 A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      |+..|+    .+++++|...|
T Consensus       326 A~~~g~----~e~v~lLl~~~  342 (376)
T 2aja_A          326 ALRLGN----QGACALLLSIP  342 (376)
T ss_dssp             HHHHTC----TTHHHHHTTSH
T ss_pred             HHHcCc----HHHHHHHHcCh
Confidence            999999    89999998765

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=3.6e-24  Score=200.84  Aligned_cols=147  Identities=27%  Similarity=0.333  Sum_probs=120.6

Q ss_pred             CCCCcHHHHHHHh-CCHHHHHHHHHCCCCCCccC--CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q 020274          165 TAKWRPLQTLTLS-MQIRYMDMLLDGGLDIDSVD--KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAV  241 (328)
Q Consensus       165 ~~g~t~L~~A~~~-g~~~~v~~Ll~~gadi~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~  241 (328)
                      ..+.|+||.|+.. |+.+++++|+++|++++..+  ..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~  276 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHAT  276 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            3456899999999 99999999999999999998  88999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCcHHHHHHHcCC
Q 020274          242 QVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING---ADKSRKTKDGKTALDMSLCYGR  311 (328)
Q Consensus       242 ~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g---ad~~~~d~~G~TpL~~A~~~g~  311 (328)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+.+|   ++....+..+.|+++++.....
T Consensus       277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~  349 (368)
T 3jue_A          277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSL  349 (368)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999775   4455667778899998876653

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=1.6e-24  Score=183.10  Aligned_cols=116  Identities=25%  Similarity=0.314  Sum_probs=110.8

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccC-CCCCcHHHHHHH
Q 020274          197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQ  275 (328)
Q Consensus       197 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d-~~g~TpL~~A~~  275 (328)
                      +..|.||||+|+..|+.+++++|++ |++++.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4468899999999999999999999 99999999999999999999999999999999999999998 889999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCC
Q 020274          276 SRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDF  313 (328)
Q Consensus       276 ~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~  313 (328)
                      .|+.+++++|+++|++++.+|..|.||||+|+..++..
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~  157 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREILKTT  157 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTC
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCc
Confidence            99999999999999999999999999999999887643

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=2.4e-23  Score=188.17  Aligned_cols=127  Identities=24%  Similarity=0.345  Sum_probs=118.7

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHCCCCCC------ccCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChH
Q 020274          166 AKWRPLQTLTLSMQIRYMDMLLDGGLDID------SVDKDGLTALHKAIIG---KKEAVISHLLRKGANPHVKDGDGATP  236 (328)
Q Consensus       166 ~g~t~L~~A~~~g~~~~v~~Ll~~gadi~------~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~d~~~~d~~g~tp  236 (328)
                      ...++|+.|+..|+.+.++.++..|++++      ..+..|.||||+|+..   |+.+++++|+++|++++.+|..|+||
T Consensus       129 ~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~Tp  208 (278)
T 1dcq_A          129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCH
T ss_pred             hhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCH
Confidence            34578999999999999999999999854      4478899999999998   89999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 020274          237 LHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK  292 (328)
Q Consensus       237 Lh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~  292 (328)
                      ||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999864

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=4.9e-24  Score=194.85  Aligned_cols=141  Identities=18%  Similarity=0.125  Sum_probs=124.6

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCC----CCCCCCCcHHHHHHHh---CCHHHHHHHHHCCCCCCccCCCCCcHHH
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLG----KISTAKWRPLQTLTLS---MQIRYMDMLLDGGLDIDSVDKDGLTALH  205 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~----~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~gadi~~~d~~g~t~L~  205 (328)
                      ...++.|+..++.+.++.++..|.+++..    ..+..|+||||+|+..   |+.+++++|+++|++++.+|..|.||||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh  231 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH  231 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence            45799999999999999999999988752    1477899999999997   8999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCH
Q 020274          206 KAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNR  279 (328)
Q Consensus       206 ~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~  279 (328)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++      .|.||||+|+..|+.
T Consensus       232 ~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          232 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999876      589999999998864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.90  E-value=8e-23  Score=184.69  Aligned_cols=122  Identities=21%  Similarity=0.255  Sum_probs=115.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCC------CCCCCCChHHHHHHHc---CCHHHHHHHHhCCCCccccCCCCCcHHH
Q 020274          201 LTALHKAIIGKKEAVISHLLRKGANPH------VKDGDGATPLHYAVQV---GAMQSVKLLIKYNVDVNVADNEGWTPLH  271 (328)
Q Consensus       201 ~t~L~~A~~~g~~~~v~~Ll~~g~d~~------~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~ga~in~~d~~g~TpL~  271 (328)
                      .++|+.|+..|+.+.+..++..|++++      ..+..|+||||+|+..   |+.+++++|+++|+++|.+|..|+||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            468999999999999999999999954      4578999999999999   8999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          272 IAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       272 ~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|....
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~----~~~v~~Ll~~g  261 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH----EHCEELLTQAL  261 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCC----HHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999    99999997643

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.90  E-value=3e-23  Score=155.74  Aligned_cols=92  Identities=41%  Similarity=0.609  Sum_probs=60.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCH
Q 020274          200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNR  279 (328)
Q Consensus       200 g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~  279 (328)
                      |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~   81 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL   81 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCH
Confidence            56666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHcCCC
Q 020274          280 DIAKVLLINGAD  291 (328)
Q Consensus       280 ~iv~~Ll~~gad  291 (328)
                      +++++|+++|++
T Consensus        82 ~~~~~Ll~~ga~   93 (93)
T 1n0q_A           82 EVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            666666666654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=1e-23  Score=186.64  Aligned_cols=114  Identities=25%  Similarity=0.334  Sum_probs=109.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccC-CCCCcHHHHHHHc
Q 020274          198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQS  276 (328)
Q Consensus       198 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d-~~g~TpL~~A~~~  276 (328)
                      ..|.||||+|+..|+.+++++|++ |++++.++..|+||||+|+..|+.++|++|+++|++++.++ ..|.||||+|+..
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~  121 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  121 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence            468899999999999999999999 99999999999999999999999999999999999999998 7899999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCC
Q 020274          277 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRD  312 (328)
Q Consensus       277 g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~  312 (328)
                      |+.+++++|+++|++++.+|..|.||||+|+..++.
T Consensus       122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~  157 (244)
T 3ui2_A          122 VRPEVVEALVELGADIEVEDERGLTALELAREILKT  157 (244)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc
Confidence            999999999999999999999999999999976653

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.89  E-value=7.1e-23  Score=192.04  Aligned_cols=125  Identities=25%  Similarity=0.352  Sum_probs=119.0

Q ss_pred             CCCCCcHHHHHHHc-CCHHHHHHHHHCCCCCCCCC--CCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHH
Q 020274          197 DKDGLTALHKAIIG-KKEAVISHLLRKGANPHVKD--GDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIA  273 (328)
Q Consensus       197 d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~d~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A  273 (328)
                      ...+.|+||+|+.. ++.+++++|+++|++++..+  ..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            34567899999999 99999999999999999988  8999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          274 IQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       274 ~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      +..|+.+++++|+++|++++.+|..|.||||+|+..|+    .+++++|...
T Consensus       276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~----~~iv~lLl~~  323 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETAN----ADIVTLLRLA  323 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCC----HHHHHHHHHc
Confidence            99999999999999999999999999999999999999    9999998753

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.89  E-value=1.2e-22  Score=152.38  Aligned_cols=93  Identities=33%  Similarity=0.511  Sum_probs=89.5

Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCC
Q 020274          166 AKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGA  245 (328)
Q Consensus       166 ~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~  245 (328)
                      +|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCC
Q 020274          246 MQSVKLLIKYNVD  258 (328)
Q Consensus       246 ~~iv~~Ll~~ga~  258 (328)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999975

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.89  E-value=1.2e-23  Score=163.92  Aligned_cols=107  Identities=36%  Similarity=0.509  Sum_probs=61.0

Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHH
Q 020274          196 VDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQ  275 (328)
Q Consensus       196 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~  275 (328)
                      +|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCcH
Q 020274          276 SRNRDIAKVLLINGADKSRKTKDGKTA  302 (328)
Q Consensus       276 ~g~~~iv~~Ll~~gad~~~~d~~G~Tp  302 (328)
                      .|+.+++++|+++|++++.++..|.||
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             CCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            555555555555555555555555554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=9.9e-23  Score=158.66  Aligned_cols=108  Identities=31%  Similarity=0.341  Sum_probs=102.7

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHH
Q 020274          163 ISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ  242 (328)
Q Consensus       163 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~  242 (328)
                      .+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.++..|+||||+|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCCccccCCCCCcHH
Q 020274          243 VGAMQSVKLLIKYNVDVNVADNEGWTPL  270 (328)
Q Consensus       243 ~g~~~iv~~Ll~~ga~in~~d~~g~TpL  270 (328)
                      .|+.+++++|+++|++++.++..|.||-
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999999999874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.82  E-value=4.6e-20  Score=142.84  Aligned_cols=92  Identities=36%  Similarity=0.504  Sum_probs=68.5

Q ss_pred             CCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 020274          228 VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL  307 (328)
Q Consensus       228 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~  307 (328)
                      ..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~   98 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI   98 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence            34566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HcCCCCChHHHHHHHh
Q 020274          308 CYGRDFKSYDLAKLLK  323 (328)
Q Consensus       308 ~~g~~~~~~~i~~lL~  323 (328)
                      .+|+    .+++++|+
T Consensus        99 ~~~~----~~~~~~L~  110 (110)
T 2zgd_A           99 DNGN----EDLAEILQ  110 (110)
T ss_dssp             HHTC----HHHHHHHC
T ss_pred             HcCC----HHHHHHhC
Confidence            7777    77777763

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=1.6e-19  Score=139.82  Aligned_cols=89  Identities=25%  Similarity=0.309  Sum_probs=46.2

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHc
Q 020274          164 STAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQV  243 (328)
Q Consensus       164 ~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~  243 (328)
                      +..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus        21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  100 (110)
T 2zgd_A           21 GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDN  100 (110)
T ss_dssp             -CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHc
Confidence            44455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHH
Q 020274          244 GAMQSVKLL  252 (328)
Q Consensus       244 g~~~iv~~L  252 (328)
                      |+.+++++|
T Consensus       101 ~~~~~~~~L  109 (110)
T 2zgd_A          101 GNEDLAEIL  109 (110)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHh
Confidence            555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	328
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-24
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-20
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-18
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-26
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-20
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-23
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-21
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-21
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-14
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.002
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-19
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-18
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-18
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-18
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-17
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-12
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-17
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-15
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-09
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-11
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	4e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	8e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	7e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.002
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	4e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 1e-26
 Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 4/158 (2%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPH 227
             PL           + +LL    + +  +K GLT LH         V   L++ G    
Sbjct: 232 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 291

Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI 287
                G TPLH A   G ++ VK L+++  DVN     G++PLH A Q  + DI  +LL 
Sbjct: 292 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 351

Query: 288 NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
           NGA  +  + DG T L ++   G       +  +LK++
Sbjct: 352 NGASPNEVSSDGTTPLAIAKRLGYI----SVTDVLKVV 385

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (248), Expect = 3e-24
 Identities = 35/109 (32%), Positives = 57/109 (52%)

Query: 201 LTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVN 260
           LT LH A       ++ +LL++GA+P+V +    TPLH A + G  +  K L++    VN
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 261 VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCY 309
               +  TPLH A +  + ++ K+LL N A+ +  T  G T L ++   
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 109

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 3e-23
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 37/173 (21%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
           +  LL  G   +  +    T LH A       V  +LL+  A  + K  D  TPLH A +
Sbjct: 16  VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAAR 75

Query: 243 VGAMQSVKLLIKYNVDV---------------------------------NVADNEGWTP 269
           +G    VKLL++ N +                                       +G+TP
Sbjct: 76  IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTP 135

Query: 270 LHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           LH+A +     +A++LL   A  +   K+G T L +++ +     + D+ KLL
Sbjct: 136 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN----NLDIVKLL 184

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.5 bits (231), Expect = 5e-22
 Identities = 47/203 (23%), Positives = 74/203 (36%), Gaps = 35/203 (17%)

Query: 149 REILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAI 208
           + +L + A+PN    +     PL     +        LL     +++  KD  T LH A 
Sbjct: 17  KNLLQRGASPN--VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAA 74

Query: 209 IGKKEAVISHLLRKGANPH---------------------------------VKDGDGAT 235
                 ++  LL   ANP+                                      G T
Sbjct: 75  RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFT 134

Query: 236 PLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRK 295
           PLH A + G ++  +LL++ +   N A   G TPLH+A+   N DI K+LL  G      
Sbjct: 135 PLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP 194

Query: 296 TKDGKTALDMSLCYGRDFKSYDL 318
             +G T L ++    +   +  L
Sbjct: 195 AWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.8 bits (224), Expect = 4e-21
 Identities = 28/77 (36%), Positives = 44/77 (57%)

Query: 235 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR 294
           TPLH A  +G +  VK L++     NV++ +  TPLH+A ++ + ++AK LL N A  + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 295 KTKDGKTALDMSLCYGR 311
           K KD +T L  +   G 
Sbjct: 62  KAKDDQTPLHCAARIGH 78

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (222), Expect = 9e-21
 Identities = 41/144 (28%), Positives = 71/144 (49%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPH 227
           + PL       ++R  ++LL+     ++  K+GLT LH A+      ++  LL +G +PH
Sbjct: 133 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH 192

Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI 287
               +G TPLH A +   ++  + L++Y    N    +G TPLH+A Q  + ++  +LL 
Sbjct: 193 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 252

Query: 288 NGADKSRKTKDGKTALDMSLCYGR 311
             A+ +   K G T L +    G 
Sbjct: 253 KQANGNLGNKSGLTPLHLVAQEGH 276

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (216), Expect = 4e-20
 Identities = 47/165 (28%), Positives = 72/165 (43%), Gaps = 2/165 (1%)

Query: 149 REILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAI 208
             +L ++A PN          PL        +  + +LL  G    S   +G T LH A 
Sbjct: 149 ELLLERDAHPN--AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA 206

Query: 209 IGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWT 268
              +  V   LL+ G + + +   G TPLH A Q G  + V LL+    + N+ +  G T
Sbjct: 207 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 266

Query: 269 PLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDF 313
           PLH+  Q  +  +A VL+ +G      T+ G T L ++  YG   
Sbjct: 267 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK 311

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.6 bits (208), Expect = 6e-19
 Identities = 45/156 (28%), Positives = 67/156 (42%)

Query: 155 NATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEA 214
               N    +TA   PL        +  +  LL+       + K G T LH A    K  
Sbjct: 87  ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 146

Query: 215 VISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI 274
           V   LL + A+P+    +G TPLH AV    +  VKLL+      +     G+TPLHIA 
Sbjct: 147 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAA 206

Query: 275 QSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYG 310
           +    ++A+ LL  G   + ++  G T L ++   G
Sbjct: 207 KQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG 242

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.2 bits (199), Expect = 8e-18
 Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 4/155 (2%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPH 227
           + PL       Q+     LL  G   ++    G+T LH A       +++ LL K AN +
Sbjct: 199 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN 258

Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI 287
           + +  G TPLH   Q G +    +LIK+ V V+     G+TPLH+A    N  + K LL 
Sbjct: 259 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 318

Query: 288 NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           + AD + KTK G + L  +   G      D+  LL
Sbjct: 319 HQADVNAKTKLGYSPLHQAAQQGH----TDIVTLL 349

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-26
 Identities = 45/138 (32%), Positives = 70/138 (50%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPH 227
           W PL     + +   +  LL  G  +++V+++G T LH A    +  +   LL  GANP 
Sbjct: 71  WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 130

Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI 287
            KD   AT +H A   G ++ + +L+ Y    N+ D EG TPLH+A      + AK+L+ 
Sbjct: 131 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 190

Query: 288 NGADKSRKTKDGKTALDM 305
            GA    + K+ KT L +
Sbjct: 191 QGASIYIENKEEKTPLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (213), Expect = 1e-20
 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 1/119 (0%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPH 227
             PL       +     MLL+GG + D+ D    TA+H+A       +I  LL   A+ +
Sbjct: 104 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN 163

Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
           ++D +G TPLH A     ++  KLL+     + + + E  TPL +A +     I K ++
Sbjct: 164 IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (207), Expect = 9e-20
 Identities = 41/134 (30%), Positives = 57/134 (42%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
            +L         D+D  TALH A       ++  LL+ G   + KD  G +PLH A   G
Sbjct: 22  SILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 81

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
             + VK L+     VN  +  G TPLH A      +IA +LL  GA+   K     TA+ 
Sbjct: 82  RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMH 141

Query: 305 MSLCYGRDFKSYDL 318
            +   G     + L
Sbjct: 142 RAAAKGNLKMIHIL 155

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (237), Expect = 2e-23
 Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 6/119 (5%)

Query: 183 MDMLLD-GGLDIDSVDKDGLTALHKAIIGKK----EAVISHLLRKGANPHVKDGDGATPL 237
           + +LLD  G D+++ D  G  AL  A++       EA+   LL  GA+ +V+   G TPL
Sbjct: 164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223

Query: 238 HYAVQVGAMQSVKLLI-KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRK 295
             AV+   +  V+ L+ + ++++N  D++G T L +A++ + + IA++L   GA     
Sbjct: 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.6 bits (221), Expect = 3e-21
 Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 10/136 (7%)

Query: 193 IDSVDKDGLTALHKAIIGKKEAVISHLL-RKGANPHVKDGDGATPLHYAVQVGAMQSV-- 249
            + + K G TAL  A       V+  LL   GA+ +  D  G   L +A+       V  
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 250 --KLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI-NGADKSRKTKDGKTALDMS 306
              LL+ +  DVNV    G TPL +A++ ++  + + LL     + +    DGKTAL ++
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

Query: 307 LCYGRDFKSYDLAKLL 322
           +          +A+LL
Sbjct: 261 VELKL----KKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 4e-18
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 140 VEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKD 199
           ++ LL+       + NA  N+G+ +          +    I    +LLD G D++   + 
Sbjct: 164 LKILLD---EMGADVNACDNMGRNALIHALLSSDDSDVEAI--THLLLDHGADVNVRGER 218

Query: 200 GLTALHKAIIGKKEAVISHLL-RKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD 258
           G T L  A+  K   ++  LL ++    +  D DG T L  AV++   +  +LL K    
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 278

Query: 259 VNVAD 263
            +  D
Sbjct: 279 TDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 2e-13
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 19/160 (11%)

Query: 178 MQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKD------- 230
             ++ + + L  G D++  D  G TA  +A +  K   +  L ++GAN +++        
Sbjct: 83  GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQE 142

Query: 231 ---GDGATPLHYAVQVGAMQSVKLLI-KYNVDVNVADNEGWTPLHIAIQSRNR----DIA 282
                GAT L  A + G ++ +K+L+ +   DVN  DN G   L  A+ S +      I 
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT 202

Query: 283 KVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
            +LL +GAD + + + GKT L +++          L + L
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKH----LGLVQRL 238

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 8e-11
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 232 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNE-GWTPLHIAIQSRNRDIAKVLLIN 288
           +    L  AVQ   +  V+ L++   +VN  + E GWTPLH A+Q    DI ++LL +
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 2e-10
 Identities = 42/185 (22%), Positives = 71/185 (38%), Gaps = 45/185 (24%)

Query: 183 MDMLLDGGLDIDSVDKD-GLTALHKAIIGKKEAVISHLL--------------------- 220
           +  LL+GG +++  +++ G T LH A+   +E ++  LL                     
Sbjct: 21  VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAA 80

Query: 221 ------------RKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD----- 263
                        KGA+ +  D  G T    A   G ++++K L K   +VN+       
Sbjct: 81  IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED 140

Query: 264 -----NEGWTPLHIAIQSRNRDIAKVLLIN-GADKSRKTKDGKTALDMSLCYGRDFKSYD 317
                  G T L  A +  + ++ K+LL   GAD +     G+ AL  +L    D     
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 318 LAKLL 322
           +  LL
Sbjct: 201 ITHLL 205

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 8e-10
 Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 1/112 (0%)

Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDGD-GATPLHYAVQVGAMQSVKLLIKYNV 257
           +    L KA+  +   ++  LL  GAN + ++ + G TPLH AVQ+     V+LL+++  
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 258 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCY 309
           D  +    G TP  +A  + +  + K+ L  GAD +     G TA   +  Y
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY 115

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 262 ADNEGWTPLHIAIQSRNRDIAKVLLINGAD-KSRKTKDGKTALDMSLCYGR 311
           A  E    L  A+Q+ + D+ + LL  GA+   ++ + G T L  ++   R
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR 51

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 90.9 bits (224), Expect = 1e-21
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 1/110 (0%)

Query: 178 MQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEA-VISHLLRKGANPHVKDGDGATP 236
           +  +   +  DG    DS    G TALH A        V   +  KG+N   +D DG TP
Sbjct: 165 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP 224

Query: 237 LHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
           +  A Q G ++ V  LI+    V   D    T   +A  + + +I  +  
Sbjct: 225 IMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 69.8 bits (169), Expect = 2e-14
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 218 HLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN-VDVNVADNEGWTPLHIAIQS 276
                 A    +   G T LHYA QV  M  VK L+     + +  D +G TP+ +A Q 
Sbjct: 172 VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE 231

Query: 277 RNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
              ++   L+  GA          TA  ++         +++  + 
Sbjct: 232 GRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH----HNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 68.6 bits (166), Expect = 6e-14
 Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 168 WRPLQTLTLSMQIRYM-DMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANP 226
              L        +  +  ++ + G + D  D+DG T +  A    +  V+ +L+++GA+ 
Sbjct: 188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 247

Query: 227 HVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
              D    T    A        V +  + 
Sbjct: 248 EAVDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.4 bits (150), Expect = 7e-12
 Identities = 13/84 (15%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 235 TPLHYAVQ-VGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN----- 288
           +P+    +  G+    + + + +V++ +      T LH    + + + ++ L+++     
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 289 ---GADKSRKTKDGKTALDMSLCY 309
              GAD +    D  T L +++  
Sbjct: 61  IAAGADVNAMDCDENTPLMLAVLA 84

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.1 bits (144), Expect = 6e-11
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNV---- 257
             LH    G   A+   + R+  N  +      T LH+     + +  + LI +      
Sbjct: 4   IKLHTEAAGS-YAITEPITRESVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECI 61

Query: 258 ----DVNVADNEGWTPLHIAIQSRNRD 280
               DVN  D +  TPL +A+ +R R 
Sbjct: 62  AAGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 48.6 bits (114), Expect = 3e-07
 Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 9/115 (7%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAII-GKKEAV-------ISHLLRKGANPHVKDGDGA 234
            + +    ++I    +   T LH        E             +  GA+ +  D D  
Sbjct: 17  TEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN 75

Query: 235 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 289
           TPL  AV     + V  L+K   D  + +    + LH A  +R+  +   +L + 
Sbjct: 76  TPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNST 130

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 4/55 (7%), Positives = 16/55 (29%), Gaps = 4/55 (7%)

Query: 268 TPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           +P+ +  ++         +   +      +  +T L             + ++ L
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSS----AEKSEDL 52

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 84.4 bits (207), Expect = 2e-19
 Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 178 MQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPL 237
           M       L  G ++     K G TALH A       V+  L++   + ++KD DG TPL
Sbjct: 177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPL 236

Query: 238 HYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
           H A   G  ++ ++L++   D+   +  G T   +A    + DI   L 
Sbjct: 237 HAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA----DEDILGYLE 281

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 82.1 bits (201), Expect = 2e-18
 Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 8/108 (7%)

Query: 218 HLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 277
            L     N       G T LH A   G  + +KLLI+   DVN+ D +GWTPLH A    
Sbjct: 184 WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWG 243

Query: 278 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
             +  ++L+ N  D     K G+TA D++          D+   L+ L
Sbjct: 244 KEEACRILVENLCDMEAVNKVGQTAFDVA--------DEDILGYLEEL 283

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.3 bits (147), Expect = 2e-11
 Identities = 19/90 (21%), Positives = 30/90 (33%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPH 227
              L           + +L+    D++  D DG T LH A    KE     L+    +  
Sbjct: 200 GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME 259

Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIKYNV 257
             +  G T    A +       +L  K N+
Sbjct: 260 AVNKVGQTAFDVADEDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.7 bits (130), Expect = 3e-09
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)

Query: 211 KKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPL 270
             E  +   + K     VK  DG      A   G  + V  L++   D+N A+ +G T L
Sbjct: 19  GSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINYANVDGLTAL 77

Query: 271 HIAIQSRNRDI 281
           H A    N D+
Sbjct: 78  HQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 52.4 bits (124), Expect = 2e-08
 Identities = 36/110 (32%), Positives = 50/110 (45%)

Query: 196 VDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
           V  D       A        +  LL +GA+ +  + DG T LH A     +  VK L++ 
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

Query: 256 NVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDM 305
             ++N  DNEGW PLH A      DIA+ L+  GA       +G T LD+
Sbjct: 96  GANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.5 bits (106), Expect = 4e-06
 Identities = 27/155 (17%), Positives = 58/155 (37%), Gaps = 10/155 (6%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPH 227
           W PL        +   + L+  G  + +V+ +G T L  A     E ++ + + +     
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI 166

Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI 287
                         ++    + + L   +++       G T LH+A      ++ K+L+ 
Sbjct: 167 EA------ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ 220

Query: 288 NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
              D + K  DG T L  +  +G+     +  ++L
Sbjct: 221 ARYDVNIKDYDGWTPLHAAAHWGK----EEACRIL 251

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.8 bits (99), Expect = 3e-05
 Identities = 12/49 (24%), Positives = 17/49 (34%)

Query: 263 DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
             +       A  S + +    LL  GAD +    DG TAL  +     
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN 85

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.2 bits (87), Expect = 7e-04
 Identities = 35/99 (35%), Positives = 52/99 (52%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
            LL+ G DI+  + DGLTALH+A I     ++  L+  GAN +  D +G  PLH A   G
Sbjct: 58  RLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAK 283
            +   + LI     V   ++EG TPL IA +    ++ +
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQ 156

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.0 bits (201), Expect = 2e-18
 Identities = 27/174 (15%), Positives = 56/174 (32%), Gaps = 18/174 (10%)

Query: 149 REILNQNATPNL--GKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHK 206
           + ++   +          +   + ++++       +  +L      +   D    T LH 
Sbjct: 124 KHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH 183

Query: 207 AIIGKK------------EAVISHLLRKGANP-HVKDGDGATPLHYAVQVGAMQSVKLLI 253
            II               + ++  +++K   P      +  +  +          ++ L 
Sbjct: 184 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD 243

Query: 254 K---YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
                   +N  D+ G T L+IA +  N  I   LL  GAD     K G   +D
Sbjct: 244 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.6 bits (200), Expect = 2e-18
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 4/154 (2%)

Query: 125 AATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMD 184
           A  +++ Y+    + +   L P      + N T     I T+                M 
Sbjct: 147 AVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMG 206

Query: 185 MLLD-GGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRK---GANPHVKDGDGATPLHYA 240
            ++      I S   +  +  +     +K++++ +L  K       + +D +G T L+ A
Sbjct: 207 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 266

Query: 241 VQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAI 274
            ++G +  V  L+ Y  D  +A+  G  P+    
Sbjct: 267 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.4 bits (150), Expect = 1e-11
 Identities = 28/157 (17%), Positives = 62/157 (39%), Gaps = 2/157 (1%)

Query: 171 LQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKD 230
           L +  LS  ++ M  L    ++ +         L + +  + + + + L    +N + + 
Sbjct: 10  LTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEG 69

Query: 231 GDGATPLHYAVQVGAMQSVK-LLIKYNVDVNVA-DNEGWTPLHIAIQSRNRDIAKVLLIN 288
           G       +      +Q V        +++N+  D  G TPLH      N ++ K L+ +
Sbjct: 70  GSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH 129

Query: 289 GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL 325
           G+++      G++ L  ++    ++ S     LL  L
Sbjct: 130 GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 166

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.1 bits (131), Expect = 3e-09
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 5/124 (4%)

Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVK-DGDGATPLHYAVQVGAMQSVKLLIKYNVDVN 260
              H +     + V         N ++  D  G TPLH+   +  ++ VK L+K+  +  
Sbjct: 75  QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL 134

Query: 261 VADNEGWTPLHIAIQSRN----RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSY 316
             DN G + L  A++S N         +L         +    +T L   +         
Sbjct: 135 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS 194

Query: 317 DLAK 320
             AK
Sbjct: 195 AAAK 198

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 81.5 bits (200), Expect = 4e-18
 Identities = 22/157 (14%), Positives = 48/157 (30%), Gaps = 6/157 (3%)

Query: 153 NQNATPNLGKISTAKWRPLQTLTLS-MQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK 211
           N    P L  I    W  L    +S  ++  M +     + I       +  + + +   
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLY 68

Query: 212 KEAVISHLLRKGANPHVKDGDGATPLHYAVQVG---AMQSVKLLIKYNVDVNVADNEGWT 268
                 +  +  ++ H K          A   G   A+ ++ LL+  +  V V   E + 
Sbjct: 69  YAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQ 128

Query: 269 PLHIAIQSRNRDIAKVLLINGAD--KSRKTKDGKTAL 303
              +A ++ +  +   L         +    +   A 
Sbjct: 129 AFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF 165

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 58.0 bits (139), Expect = 3e-10
 Identities = 22/198 (11%), Positives = 46/198 (23%), Gaps = 28/198 (14%)

Query: 149 REILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSV---DKDGLTALH 205
             +     T  +  I    +   +    +  +  ++ L +      +     ++      
Sbjct: 143 NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW 202

Query: 206 KAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAV---------QVGAMQSVKLLIKYN 256
            A+      VI+ LL         +          V         ++  M     L   +
Sbjct: 203 AAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPD 262

Query: 257 VDVNVADNE-------GWTPLHIAIQSRNRDIAKVLLINGADKSRK-----TKDGKTALD 304
              ++               L         D  + LL     K+         D    L 
Sbjct: 263 GVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR 322

Query: 305 MSLCYGRDFKSYDLAKLL 322
           ++L  G          LL
Sbjct: 323 LALRLGN----QGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 58.0 bits (139), Expect = 4e-10
 Identities = 14/160 (8%), Positives = 37/160 (23%), Gaps = 22/160 (13%)

Query: 149 REILNQNATPNLGKISTAK-WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKA 207
             +     T     I     +              ++ LLD  + +   +        K 
Sbjct: 178 NRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKY 237

Query: 208 IIGKKEAVIS----------------HLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKL 251
           +       ++                       +  ++       L        +  ++ 
Sbjct: 238 VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRF 297

Query: 252 LI-----KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
           L+     K          +    L +A++  N+    +LL
Sbjct: 298 LLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 337

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 52.2 bits (124), Expect = 3e-08
 Identities = 24/206 (11%), Positives = 55/206 (26%), Gaps = 29/206 (14%)

Query: 135 DLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDID 194
             L  +  LL  +E           +  I    ++  +    +  +  ++ L +      
Sbjct: 104 SALDTLCLLLTSDE----------IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI 153

Query: 195 SVDKD--GLTALHKAIIGKKEAVISHLLRKGANP---HVKDGDGATPLHYAVQVGAMQSV 249
                     A   A       V++ L           ++  +       AV  G    +
Sbjct: 154 MAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI 213

Query: 250 KLLIKYNVDVNVADNEGWTPLHIAI-------QSRNRDIAKVLLINGAD------KSRKT 296
             L+   V +  A+   +      +        +R +++     ++  D         + 
Sbjct: 214 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC 273

Query: 297 KDGKTALDMSLCYGRDFKSYDLAKLL 322
             G   L  +L    D    D  + L
Sbjct: 274 LQGFYML-RNLIRRNDEVLLDDIRFL 298

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 43.0 bits (100), Expect = 3e-05
 Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 5/69 (7%)

Query: 192 DIDSVDKDGLTALHKAIIGKKEAVISHLLRKGA-----NPHVKDGDGATPLHYAVQVGAM 246
                    L  L +         I  LL               GD    L  A+++G  
Sbjct: 271 SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 330

Query: 247 QSVKLLIKY 255
            +  LL+  
Sbjct: 331 GACALLLSI 339

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.2 bits (188), Expect = 4e-17
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 5/116 (4%)

Query: 178 MQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANP-HVKDGDGATP 236
                   L++ G  +   DK     LH+A       +I  L   G +  + +D  G TP
Sbjct: 116 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP 175

Query: 237 LHYAVQVGAMQSVKLLI-KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 291
           L +A+  G   +  LL+ KY  + ++ DN+G     +A+   N  + K  L N  D
Sbjct: 176 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.5 bits (150), Expect = 5e-12
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 9/107 (8%)

Query: 218 HLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVD-VNVADNEGWTPLHIAIQS 276
            L+  GA+  +KD     PLH A  VG+++ ++LL       VN  D +GWTPL  A+  
Sbjct: 123 FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 182

Query: 277 RNRDIAKVLLIN-GADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
            + D A +L+   GA+       G  A D++L       +  + K  
Sbjct: 183 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL-------NEQVKKFF 222

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 1e-10
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 235 TPLHYAVQVGAMQSVK-LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 289
            PLH A        V+ LL      +   D +G  PLH ++  +  +I   LL   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 6e-08
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 202 TALHKAII-GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
             LH+A +  +   V   L  K +    KD DG  PLH++V   
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQ 45

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 268 TPLHIAIQSRNRDIAKVLLI-NGADKSRKTKDGKTALDMSLCYGRDFKSY 316
            PLH A         + LL    +   +K +DG+  L  S+ +     + 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITS 51

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 76.4 bits (186), Expect = 5e-17
 Identities = 28/108 (25%), Positives = 49/108 (45%)

Query: 178 MQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPL 237
                ++ L+    DI++ D  G TALH A        ++ LL   AN   +D    TPL
Sbjct: 101 AIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL 160

Query: 238 HYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
             A + G+ ++ K L+    +  + D+    P  +A +  + DI ++L
Sbjct: 161 FLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 68.7 bits (166), Expect = 2e-14
 Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 218 HLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSR 277
            L+   A+ +  D  G T LH+A  V   ++V +L+ ++ + +  D++  TPL +A +  
Sbjct: 108 DLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREG 167

Query: 278 NRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
           + + +K LL N A++       +   D++         +D+ +LL
Sbjct: 168 SYEASKALLDNFANREITDHMDRLPRDVASERLH----HDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 56.0 bits (133), Expect = 6e-10
 Identities = 19/99 (19%), Positives = 30/99 (30%)

Query: 154 QNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKE 213
             A  ++     +    L           +++LL    + D+ D    T L  A      
Sbjct: 110 ITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSY 169

Query: 214 AVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLL 252
                LL   AN  + D     P   A +      V+LL
Sbjct: 170 EASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.2 bits (113), Expect = 3e-07
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 249 VKLLIKYNVDVNV-ADNEGWTPLHIAIQSRNRDIAKVL 285
           +  L+    ++N   D  G T LH+A +    D AK L
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 215 VISHLLRKGANPHVK-DGDGATPLHYAVQVGAMQSVKLLIKYN 256
           VIS LL +GA  +   D  G T LH A +     + K L+   
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAG 46

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.1 bits (183), Expect = 2e-16
 Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 3/107 (2%)

Query: 196 VDKDGLTALHKAIIGKKEAVISHLLRKGANPH---VKDGDGATPLHYAVQVGAMQSVKLL 252
           V +DG TALH A+I + E  +  LL   A      +++  G T LH A  +G   +V+ L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 253 IKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
                 V VA+  G T LH+A + R    A VLL       R   D 
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.0 bits (180), Expect = 7e-16
 Identities = 41/165 (24%), Positives = 63/165 (38%), Gaps = 8/165 (4%)

Query: 140 VEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMD----MLLDGGLDIDS 195
              LL+P      + + T                  +  Q    +       D  L +++
Sbjct: 94  ACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA 153

Query: 196 VDKDGLTALHKAIIGK-KEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIK 254
            + DG T LH A+I K  E V             +   G TPLH AV+  A   ++LL+K
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK 213

Query: 255 YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDG 299
              D       G TPL  A+   N  +A++L  +GA +    +DG
Sbjct: 214 AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP---EDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 8e-10
 Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 6/147 (4%)

Query: 177 SMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATP 236
           S      D  L    D    D     A   +    +                ++ DG TP
Sbjct: 103 SHPRDASDTYLTQSQDCTP-DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161

Query: 237 LHYAVQVGAMQSVKLLIKYNVDVNV-ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRK 295
           LH AV     + V+LL     D+N      G TPLH+A++++   + ++LL  GAD + +
Sbjct: 162 LHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTAR 221

Query: 296 TKDGKTALDMSLCYGRDFKSYDLAKLL 322
              G+T L  +L          LA+LL
Sbjct: 222 MYGGRTPLGSALLRPN----PILARLL 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.2 bits (113), Expect = 4e-07
 Identities = 29/167 (17%), Positives = 55/167 (32%), Gaps = 17/167 (10%)

Query: 160 LGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLD---IDSVDKDGLTALHKAIIGKKEAVI 216
            G ++      L    +     ++D LL        +D  +  G TALH A I  + + +
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 217 SHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTP------- 269
             L   GA   V +  G T LH A +V A     +L++         ++ +         
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 270 -------LHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCY 309
                     +  +   +              +  DG T L +++ +
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH 168

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 6e-15
 Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 1/117 (0%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDK-DGLTALHKAIIGKKEAVISHLLRKGANP 226
              L     +     + +LL+ G DID+VD   G + L  A+     +++  LL+ GAN 
Sbjct: 111 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 170

Query: 227 HVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAK 283
           + +   G++ LH A   G +  V+ L++   D ++ +    TPL +A   R  DI +
Sbjct: 171 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 5e-11
 Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 1/114 (0%)

Query: 199 DGLTALHKAIIGKKEAVISHLLRKGANPHVKDG-DGATPLHYAVQVGAMQSVKLLIKYNV 257
           DGLTALH A+  + +  +  LL +GA+    D   G +PL +AV+  ++  V+LL+++  
Sbjct: 109 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 168

Query: 258 DVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGR 311
           +VN     G + LH A       + + L+ +GAD S K     T L ++     
Sbjct: 169 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 3e-10
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 199 DGLTALHKAII-GKKEAV---ISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIK 254
           DG T LH A++ G   AV   ++   + G    + +    TPLH AV       V+LL+ 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61

Query: 255 YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA----DKSRKTKDGKTALDMSLCYG 310
                   D  G T  H+A + R+    + LL + A    D   +  DG TAL +++   
Sbjct: 62  AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 121

Query: 311 RDFKSYDL 318
                  L
Sbjct: 122 CQETVQLL 129

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
           +++   GG ++D  +    T LH A+I    +V+  L+  GA+P   D  G T  H A +
Sbjct: 23  VNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE 82

Query: 243 VG----AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD 291
                     +       +D+   + +G T LH+A+ +  ++  ++LL  GAD
Sbjct: 83  HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD 135

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (157), Expect = 4e-13
 Identities = 19/91 (20%), Positives = 34/91 (37%)

Query: 210 GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTP 269
           G    V   +         +  +G T LH AV +     V LL+K   DVN    +G++P
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 181

Query: 270 LHIAIQSRNRDIAKVLLINGADKSRKTKDGK 300
             +     +  I + L     +  +   + +
Sbjct: 182 YQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 5e-10
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 232 DGATPLHYAVQVGAMQSVKLLIKY----NVDVNVADNEGWTPLHIAIQ 275
           DG + LH A+          +I+        +N  +N   TPLH+A+ 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 48

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (133), Expect = 8e-10
 Identities = 16/83 (19%), Positives = 33/83 (39%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQ 242
             ++  G         +G TALH A+  +   ++S LL+ GA+ +     G +P      
Sbjct: 128 ELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG 187

Query: 243 VGAMQSVKLLIKYNVDVNVADNE 265
             + +  + L +  ++      E
Sbjct: 188 RPSTRIQQQLGQLTLENLQMLPE 210

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (124), Expect = 1e-08
 Identities = 33/181 (18%), Positives = 58/181 (32%), Gaps = 44/181 (24%)

Query: 183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISH------------------------ 218
           +  +      ++  +    T LH A+I  +  +                           
Sbjct: 22  IRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 81

Query: 219 ---------------LLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDV-NVA 262
                               +     + +G T LH A   G +  V+LL+    DV    
Sbjct: 82  QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 141

Query: 263 DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
              G T LH+A+  +N D+  +LL  GAD +R T  G +   ++        S  + + L
Sbjct: 142 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRP----STRIQQQL 197

Query: 323 K 323
            
Sbjct: 198 G 198

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 2e-07
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)

Query: 199 DGLTALHKAII-GKKEAV---ISHLLRKGANPHVKDGDGATPLHYAVQ 242
           DG + LH AII  +K      I  +    A  + ++    TPLH AV 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI 48

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-06
 Identities = 8/49 (16%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 265 EGWTPLHIAIQSRNRDIA----KVLLINGADKSRKTKDGKTALDMSLCY 309
           +G + LH+AI    + +     + +  + A  + +    +T L +++  
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT 49

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 8/59 (13%), Positives = 15/59 (25%)

Query: 168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANP 226
              L           + +LL  G D++ V   G +            +   L +     
Sbjct: 146 RTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN 204

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.0 bits (144), Expect = 1e-11
 Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 9/116 (7%)

Query: 186 LLDGGLDID------SVDKDGLTALHKAIIGKKEA---VISHLLRKGANPHVKDGDGATP 236
               G+D+       +  +   TALH A+         ++  L++   N   + G G+T 
Sbjct: 25  AYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTA 84

Query: 237 LHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADK 292
           LHY       + +KLL++    + +A+  G TPL IA + ++    ++L    + +
Sbjct: 85  LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 140

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (128), Expect = 2e-09
 Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 13/135 (9%)

Query: 197 DKDGLTALHKAIIGKKEAVISHLLRKGANPHVK------DGDGATPLHYAVQV---GAMQ 247
               L +L +A+  +    +      G +   K           T LH AV+     ++ 
Sbjct: 3   TAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLH 62

Query: 248 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL 307
            V  L++ + +++    +G T LH    + N +  K+LL   A      + G+T LD++ 
Sbjct: 63  IVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 122

Query: 308 CYGRDFKSYDLAKLL 322
                       +LL
Sbjct: 123 RLKH----EHCEELL 133

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 10/140 (7%)

Query: 137 LKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDM---LLDGGLDI 193
           +  + Q       + ++      L          L     S+    + +   L+    ++
Sbjct: 19  IFGLLQAYA----DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL 74

Query: 194 DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLI 253
           D     G TALH   +      +  LLR  A+  + +  G TPL  A ++      +LL 
Sbjct: 75  DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 134

Query: 254 KY---NVDVNVADNEGWTPL 270
           +      + +V     W  L
Sbjct: 135 QALSGRFNSHVHVEYEWRLL 154

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.1 bits (141), Expect = 2e-11
 Identities = 23/63 (36%), Positives = 35/63 (55%)

Query: 223 GANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIA 282
           GA+ + KD    T LH+A +    + V+LLIKY  DV+       T   I+I + N D+A
Sbjct: 90  GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149

Query: 283 KVL 285
           ++L
Sbjct: 150 EIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.5 bits (103), Expect = 3e-06
 Identities = 18/75 (24%), Positives = 35/75 (46%)

Query: 178 MQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPL 237
                +++LL  G D+++ D   +TALH A     + V+  L++ GA+ H +     T  
Sbjct: 78  GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF 137

Query: 238 HYAVQVGAMQSVKLL 252
             ++  G     ++L
Sbjct: 138 DISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.7 bits (101), Expect = 5e-06
 Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 185 MLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVG 244
           +L+  G      D  G + LH A      +    LLR G +   +     TPLH A   G
Sbjct: 20  ILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG 78

Query: 245 AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALD 304
               V++L+K+  DVN  D    T LH A +  ++++ ++L+  GAD   ++K  KTA D
Sbjct: 79  HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD 138

Query: 305 MSLCYGRDFKSYDLAKLLK 323
           +S+  G      DLA++L+
Sbjct: 139 ISIDNGN----EDLAEILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 232 DGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLH 271
           D    L  A + G    V++L+         D  G +PLH
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLH 39

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 2e-09
 Identities = 49/176 (27%), Positives = 70/176 (39%), Gaps = 26/176 (14%)

Query: 114 RSG---IGAAASGDAATTISKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRP 170
           R+G    GAAA GD            ++EV +LL    RE+++ +A    GK  TA    
Sbjct: 1   RAGDRLSGAAARGD------------VQEVRRLLH---RELVHPDALNRFGK--TALQVM 43

Query: 171 LQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKD 230
           +   T                D            H A        +  L+  GA+ +V D
Sbjct: 44  MFGSTAIALELLKQGASPNVQDTSGTSPV-----HDAARTGFLDTLKVLVEHGADVNVPD 98

Query: 231 GDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL 286
           G GA P+H AVQ G    V  L     D++  D  G TPL +A+Q   +D+  +L 
Sbjct: 99  GTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 4e-06
 Identities = 33/157 (21%), Positives = 55/157 (35%), Gaps = 37/157 (23%)

Query: 198 KDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIK--- 254
           + G      A  G  + V   L R+  +P   +  G T L   +      +++LL +   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 255 -----------------------------YNVDVNVADNEGWTPLHIAIQSRNRDIAKVL 285
                                        +  DVNV D  G  P+H+A+Q  +  +   L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 286 LINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLL 322
               +D  R+   G T L+++L  G      DL  +L
Sbjct: 121 -AAESDLHRRDARGLTPLELALQRGA----QDLVDIL 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 3e-06
 Identities = 6/35 (17%), Positives = 15/35 (42%)

Query: 255 YNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLING 289
              +V   +++G T   +A      ++  ++  NG
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 9e-06
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 235 TPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLH 271
             L  A   G ++ +  L++ NV+VN  +  G T L 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ 39

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 6/29 (20%), Positives = 10/29 (34%)

Query: 227 HVKDGDGATPLHYAVQVGAMQSVKLLIKY 255
             ++  G T    A   G  + V L+   
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHY 239
             L  A        ++ LL+   N + ++G G T L  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV 40

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 8e-05
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 5/108 (4%)

Query: 149 REILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAI 208
           + I+ +   P+L                  +I    +    G+++++ D DG T LH A 
Sbjct: 18  QRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV--QFGVNVNAADSDGWTPLHCAA 75

Query: 209 IGKKEAVISHLLRKGANPHVK---DGDGATPLHYAVQVGAMQSVKLLI 253
                 V   L+  GA        D   A      ++ G  Q  + L 
Sbjct: 76  SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 123

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 7e-04
 Identities = 16/122 (13%), Positives = 33/122 (27%), Gaps = 36/122 (29%)

Query: 201 LTALHKAIIGKKEAVISHLLRKGANP---------------------------------H 227
           L  L  + +  +  ++  ++ +  +P                                 +
Sbjct: 2   LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 61

Query: 228 VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEG---WTPLHIAIQSRNRDIAKV 284
             D DG TPLH A     +Q  K L++    V                 ++      ++ 
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 121

Query: 285 LL 286
           L 
Sbjct: 122 LY 123

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 24/122 (19%), Positives = 39/122 (31%), Gaps = 36/122 (29%)

Query: 235 TPLHYAVQVGAMQSVKLLIKYNVDVNVADN------------------------------ 264
             L  +   G    V+ +I    D ++ ++                              
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 265 ---EGWTPLHIAIQSRNRDIAKVLLINGADKSRKT-KDGKTALDMSLCYGRDFKSYDLAK 320
              +GWTPLH A    N  + K L+ +GA     T  D +TA D   C   +      ++
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAAD--KCEEMEEGYTQCSQ 120

Query: 321 LL 322
            L
Sbjct: 121 FL 122

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 4e-04
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 260 NVADNEGWTPLHIAIQSRNRDIAKVLL 286
           +V D  G  P+ +A +  +RD+A+ L 
Sbjct: 96  DVRDAWGRLPVDLAEELGHRDVARYLR 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	328
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.92
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.92
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.92
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.9
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.84

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-33  Score=248.23  Aligned_cols=191  Identities=26%  Similarity=0.300  Sum_probs=174.0

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCC-CCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPN-LGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK  211 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g  211 (328)
                      ...|+.|+..+..+.++.|++.|+++. +...+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+
T Consensus        10 ~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~   89 (255)
T d1oy3d_          10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVR   89 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccC
Confidence            356899999999999999999998865 4566889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCC-----------------------------------------------CCCCCCCCCChHHHHHHHcC
Q 020274          212 KEAVISHLLRKGA-----------------------------------------------NPHVKDGDGATPLHYAVQVG  244 (328)
Q Consensus       212 ~~~~v~~Ll~~g~-----------------------------------------------d~~~~d~~g~tpLh~A~~~g  244 (328)
                      +.+++++|++.+.                                               +++.++..|.||||+|+..+
T Consensus        90 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~  169 (255)
T d1oy3d_          90 AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK  169 (255)
T ss_dssp             CHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTT
T ss_pred             chHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccccc
Confidence            9999999976432                                               22345778999999999999


Q ss_pred             CHHHHHHHHhCCCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHh
Q 020274          245 AMQSVKLLIKYNVDVNVA-DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  323 (328)
Q Consensus       245 ~~~iv~~Ll~~ga~in~~-d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~  323 (328)
                      +.+++++|++++++.+.. +..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+++    .+++++|.
T Consensus       170 ~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~----~~i~~~Ll  245 (255)
T d1oy3d_         170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPN----PILARLLR  245 (255)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSC----HHHHHHHH
T ss_pred             ccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCC----HHHHHHHH
Confidence            999999999999998865 5689999999999999999999999999999999999999999999999    99999998


Q ss_pred             hCCC
Q 020274          324 ILPV  327 (328)
Q Consensus       324 ~~~~  327 (328)
                      ....
T Consensus       246 ~~Ga  249 (255)
T d1oy3d_         246 AHGA  249 (255)
T ss_dssp             HTTC
T ss_pred             HcCC
Confidence            7654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-32  Score=235.63  Aligned_cols=184  Identities=28%  Similarity=0.361  Sum_probs=164.9

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCH
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKE  213 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~  213 (328)
                      ..|+.|+..|..+.++.++..+......  ...+.++++.++..++.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus        39 TpLh~Aa~~g~~e~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~  116 (223)
T d1uoha_          39 TALHWACSAGHTEIVEFLLQLGVPVNDK--DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRH  116 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCSCCC--CTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHhhhhcccccccccccccccc--cccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCH
Confidence            3577778888888888777776655433  55677888888888888899999999999999999999999999999999


Q ss_pred             HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 020274          214 AVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKS  293 (328)
Q Consensus       214 ~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  293 (328)
                      +++++|+++|++++.++..|.||||+|+..++..++++|+..|++++.+|..|+||||+|+..|+.++|++|+++|+|++
T Consensus       117 e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~  196 (223)
T d1uoha_         117 EIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY  196 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred             HHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          294 RKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       294 ~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      .+|.+|+||||+|. .|+    .+|+++|.+
T Consensus       197 ~~d~~g~tpl~~A~-~~~----~~i~~~Ll~  222 (223)
T d1uoha_         197 IENKEEKTPLQVAK-GGL----GLILKRMVE  222 (223)
T ss_dssp             CCCTTSCCHHHHCC-TTH----HHHHHHHHC
T ss_pred             CCCCCCCCHHHHHH-CCC----HHHHhcccC
Confidence            99999999999984 566    788888764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-31  Score=231.33  Aligned_cols=187  Identities=21%  Similarity=0.264  Sum_probs=175.5

Q ss_pred             HHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHH
Q 020274          135 DLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEA  214 (328)
Q Consensus       135 ~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~  214 (328)
                      -+..++..|+.+.+++++...... ....|..|+||||+|+..|+.+++++|+..+......+..+.++++.++..++.+
T Consensus         6 ~~~~~a~~G~~~~v~~~l~~~~~~-~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (223)
T d1uoha_           6 MVCNLAYSGKLEELKESILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDE   84 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCGGG-GGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHhCCHHHHHHHHHhCCCc-CcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccc
Confidence            356789999999999998775332 4456889999999999999999999999999999998999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 020274          215 VISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSR  294 (328)
Q Consensus       215 ~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~  294 (328)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+.+|++++.
T Consensus        85 i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~  164 (223)
T d1uoha_          85 IVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI  164 (223)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             hhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          295 KTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       295 ~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      +|..|+||||+|+.+|+    .+++++|...+
T Consensus       165 ~d~~g~TpL~~Aa~~g~----~~~v~~LL~~G  192 (223)
T d1uoha_         165 QDTEGNTPLHLACDEER----VEEAKLLVSQG  192 (223)
T ss_dssp             CCTTCCCHHHHHHHTTC----HHHHHHHHHTT
T ss_pred             ccCCCCceeccccccCc----HHHHHHHHHCC
Confidence            99999999999999998    99999997654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=5e-32  Score=240.16  Aligned_cols=189  Identities=21%  Similarity=0.280  Sum_probs=162.0

Q ss_pred             ccHHHHHHHHhhChHHHHHH--------HhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcH
Q 020274          132 YEEDLLKEVEQLLEPEEREI--------LNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTA  203 (328)
Q Consensus       132 ~~~~l~~ai~~~~~~~v~~l--------L~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~  203 (328)
                      -...|+-|+..|..+.++.|        +..|++++.  .+..|+||||+|+..|+.++|++|+++|++++.++..|.||
T Consensus        33 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~--~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~  110 (277)
T d2fo1e1          33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA--MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  110 (277)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC--CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             CccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccc--cCCCCCeeecccccccccccccccccccccccccccccccc
Confidence            44778888888887766544        566777665  47889999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCC---C--------------------------------------------CCCCCCCCChH
Q 020274          204 LHKAIIGKKEAVISHLLRKGA---N--------------------------------------------PHVKDGDGATP  236 (328)
Q Consensus       204 L~~A~~~g~~~~v~~Ll~~g~---d--------------------------------------------~~~~d~~g~tp  236 (328)
                      |++|+..++..++.+++..+.   .                                            .+..+..|.||
T Consensus       111 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  190 (277)
T d2fo1e1         111 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTA  190 (277)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCT
T ss_pred             ccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCc
Confidence            999999999998888765421   0                                            12234568899


Q ss_pred             HHHHHHcCCHHHHHHHH-hCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCCh
Q 020274          237 LHYAVQVGAMQSVKLLI-KYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKS  315 (328)
Q Consensus       237 Lh~A~~~g~~~iv~~Ll-~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~  315 (328)
                      ||+++..++.+++++++ ..+.+++.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+.+|+    
T Consensus       191 L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~----  266 (277)
T d2fo1e1         191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH----  266 (277)
T ss_dssp             HHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC----
T ss_pred             cccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCC----
Confidence            99999999999988755 5688999999999999999999999999999999999999999999999999999999    


Q ss_pred             HHHHHHHhhCC
Q 020274          316 YDLAKLLKILP  326 (328)
Q Consensus       316 ~~i~~lL~~~~  326 (328)
                      .+|+++|.++.
T Consensus       267 ~~iv~lL~~c~  277 (277)
T d2fo1e1         267 HNIVDIFDRCR  277 (277)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhC
Confidence            99999998763

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=1.1e-30  Score=233.80  Aligned_cols=174  Identities=26%  Similarity=0.370  Sum_probs=161.3

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~  212 (328)
                      ...|+.|+..|+.+.++.||+.|++++.  .+..|+||||+|+..|+.++|++|+++|+++...+..+.+||++|+..++
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~Gadvn~--~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~  118 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERGADINY--ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGY  118 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCTTC--BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCc--cCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccc
Confidence            3569999999999999999999988765  47889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCC------------------------------------------------------------CCC
Q 020274          213 EAVISHLLRKGANPHVK------------------------------------------------------------DGD  232 (328)
Q Consensus       213 ~~~v~~Ll~~g~d~~~~------------------------------------------------------------d~~  232 (328)
                      .++++.|+++|+..+..                                                            +..
T Consensus       119 ~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (291)
T d1s70b_         119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS  198 (291)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTT
T ss_pred             cchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCC
Confidence            99999999988755432                                                            346


Q ss_pred             CChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q 020274          233 GATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLC  308 (328)
Q Consensus       233 g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~  308 (328)
                      |.||||.|+..|+.+++++|+++|++++.++..|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|++
T Consensus       199 g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             CCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            7889999999999999999999999999999999999999999999999999999999999999999999999975

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=4.9e-31  Score=224.76  Aligned_cols=173  Identities=24%  Similarity=0.319  Sum_probs=157.8

Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCH------------
Q 020274          146 PEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKE------------  213 (328)
Q Consensus       146 ~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~------------  213 (328)
                      +.|+.|++.|++++.. .|.+|.||||+||..|+.+++++|++.|++++.++..+.++++.++..++.            
T Consensus         3 ~~v~~Ll~~g~din~~-~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (209)
T d1ot8a_           3 QVISDLLAQGAELNAT-MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRAT   81 (209)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTC
T ss_pred             HHHHHHHHCCCCcCcC-cCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            5678888988876532 367899999999999999999999999999999998888888887654433            


Q ss_pred             ----------------------HHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHH
Q 020274          214 ----------------------AVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLH  271 (328)
Q Consensus       214 ----------------------~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~  271 (328)
                                            .+.+.|+.++++++.++..|.|||+.++..+...+++.|+.++++++..|..|.||||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~  161 (209)
T d1ot8a_          82 NLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLF  161 (209)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             ccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccc
Confidence                                  5677888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHh
Q 020274          272 IAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  323 (328)
Q Consensus       272 ~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~  323 (328)
                      +|+..|+.+++++|+++|+|++.+|..|+||||+|+.+|+    .+|+++|.
T Consensus       162 ~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~----~~iv~lL~  209 (209)
T d1ot8a_         162 LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLH----HDIVRLLD  209 (209)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHC
T ss_pred             hhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCC----HHHHhhcC
Confidence            9999999999999999999999999999999999999999    99999983

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-30  Score=210.51  Aligned_cols=152  Identities=27%  Similarity=0.465  Sum_probs=146.8

Q ss_pred             cHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHH
Q 020274          169 RPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQS  248 (328)
Q Consensus       169 t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~i  248 (328)
                      +|||+||..|++++|++|+++|++++.+|..|.||||+|+ .|+.+++++|+++|++++.++..|.++|+.++..++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7999999999999999999999999999999999999886 789999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          249 VKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGA-DKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       249 v~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga-d~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      ++.|+.++.+++..+..|.+|||+|+..++.+++++|+++|+ +++.+|..|+||||+|+.+|+    .+++++|...
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~----~~iv~~Ll~~  155 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR----NEVVSLMQAN  155 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCC----HHHHHHHHhc
Confidence            999999999999999999999999999999999999999986 899999999999999999999    9999999764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.9e-30  Score=221.52  Aligned_cols=184  Identities=26%  Similarity=0.285  Sum_probs=154.5

Q ss_pred             HHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCcc---CCCCCcHHHH-----
Q 020274          135 DLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSV---DKDGLTALHK-----  206 (328)
Q Consensus       135 ~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~---d~~g~t~L~~-----  206 (328)
                      .|+.|+..+..+.++.+++.... .+...+.+|+||||+|+..|+.+++++|+++|++++..   +..|.+|+|+     
T Consensus         3 pLh~A~~~g~~~~v~~Ll~~~~~-~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           3 PLHQACMENEFFKVQELLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHCGG-GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             hHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            58899999999999999986533 34556889999999999999999999999999987643   3344455554     


Q ss_pred             ------------------------------HHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCC
Q 020274          207 ------------------------------AIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYN  256 (328)
Q Consensus       207 ------------------------------A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~g  256 (328)
                                                    ++..++.+++++|+..|.+++.++..|+||||+|+..|+.+++++|+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  161 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc
Confidence                                          45556667788888888888888899999999999999999999999986


Q ss_pred             -CCccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          257 -VDVNVADNEGWTPLHIAIQSRNRDIAKVLLI-NGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       257 -a~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                       .+++.+|..|+||||+|+..|+.++|++|++ +|+|++.+|..|+||||+|+.       .+++++|...+
T Consensus       162 ~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~-------~~~~~~Ll~~g  226 (229)
T d1ixva_         162 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN-------EQVKKFFLNNV  226 (229)
T ss_dssp             CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC-------HHHHHHHHHHC
T ss_pred             cccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh-------HHHHHHHHHcC
Confidence             6789999999999999999999999999996 599999999999999999873       47888887544

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=6.2e-30  Score=207.66  Aligned_cols=151  Identities=30%  Similarity=0.353  Sum_probs=145.5

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHH
Q 020274          168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQ  247 (328)
Q Consensus       168 ~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~  247 (328)
                      .||||.|++.|+.++|++||++|++++ .+..|+||||+|+..++.+++..++.........+..+.++++.++...+.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            389999999999999999999999987 6889999999999999999999999998888888889999999999999999


Q ss_pred             HHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHh
Q 020274          248 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLK  323 (328)
Q Consensus       248 iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~  323 (328)
                      ++++|+.+|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+    .+|+++|+
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~----~eiv~lL~  153 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN----EDLAEILQ  153 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHC
T ss_pred             eeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCC----HHHHHhCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999    99999985

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.1e-30  Score=226.43  Aligned_cols=161  Identities=24%  Similarity=0.346  Sum_probs=146.4

Q ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHHCCCC---CCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHH
Q 020274          162 KISTAKWRPLQTLTLSMQIRYMDMLLDGGLD---IDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLH  238 (328)
Q Consensus       162 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad---i~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh  238 (328)
                      .++.+|.||||+||..|+.+++++|+++|++   ++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~   83 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhh
Confidence            4578999999999999999999999999988   6677889999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCC-----------------------------------------------CCccccCCCCCcHHH
Q 020274          239 YAVQVGAMQSVKLLIKYN-----------------------------------------------VDVNVADNEGWTPLH  271 (328)
Q Consensus       239 ~A~~~g~~~iv~~Ll~~g-----------------------------------------------a~in~~d~~g~TpL~  271 (328)
                      +|+..++.+++++|++.+                                               .+++.++..|.||||
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh  163 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             hhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccc
Confidence            999999999999997642                                               123457888999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          272 IAIQSRNRDIAKVLLINGADKSRK-TKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       272 ~A~~~g~~~iv~~Ll~~gad~~~~-d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      +|+..++.+++++|+++|++++.. +..|.||||+|+..|+    .+++++|....
T Consensus       164 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~----~~~v~~Ll~~g  215 (255)
T d1oy3d_         164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA----ASVLELLLKAG  215 (255)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC----HHHHHHHHHTT
T ss_pred             ccccccccccccchhcccccccccccccccccccccccccH----HHHHHHHHHCC
Confidence            999999999999999999998865 6789999999999998    99999987653

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.8e-30  Score=207.98  Aligned_cols=151  Identities=29%  Similarity=0.458  Sum_probs=142.3

Q ss_pred             cHHHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHH
Q 020274          169 RPLQTLTLSMQIRYMDMLLDG-GLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQ  247 (328)
Q Consensus       169 t~L~~A~~~g~~~~v~~Ll~~-gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~  247 (328)
                      +.|+.||..|+.++|+.|++. +++++.+|..|+||||+|+ .|+.+++++|++++.+++.++..|.+||+.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            469999999999999999974 8899999999999999886 48899999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          248 SVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       248 iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      ++++++++|++++.+|..|.||||+|+..|+.+++++|+ .|++++.+|..|+||||+|+.+|+    .+|+++|...
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~----~~iv~~Ll~h  155 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGA----QDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCC----HHHHHHHHTT
T ss_pred             ccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCC----HHHHHHHHhh
Confidence            999999999999999999999999999999999999887 799999999999999999999999    9999999753

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-30  Score=223.74  Aligned_cols=186  Identities=27%  Similarity=0.296  Sum_probs=161.7

Q ss_pred             HHHHHHHhhChHHHHH----HHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHc
Q 020274          135 DLLKEVEQLLEPEERE----ILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIG  210 (328)
Q Consensus       135 ~l~~ai~~~~~~~v~~----lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~  210 (328)
                      .|+.|+..+..+.+..    +...+.+++.  .+..|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+..
T Consensus         5 ~Lh~A~~~g~~~~~~~li~~~~~~~~~in~--~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~   82 (221)
T d1iknd_           5 FLHLAIIHEEKALTMEVIRQVKGDLAFLNF--QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ   82 (221)
T ss_dssp             TTHHHHHTTCSSSSSCCCC-----CCCCCC--CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCccc--CCCCCCcccccccccccccccccccccccccccccccccccccccccc
Confidence            3566777777544443    3445656554  478999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCC------CCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccC-CCCCcHHHHHHHcCCHHHHH
Q 020274          211 KKEAVISHLLRKGANPH------VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD-NEGWTPLHIAIQSRNRDIAK  283 (328)
Q Consensus       211 g~~~~v~~Ll~~g~d~~------~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d-~~g~TpL~~A~~~g~~~iv~  283 (328)
                      ++.++++.|+..+....      .....|.||||.|+..++.+++++|+..|+.++..+ .+|.||||+|+..|+.++++
T Consensus        83 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~  162 (221)
T d1iknd_          83 GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVS  162 (221)
T ss_dssp             TCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHH
Confidence            99999999999876643      234568999999999999999999999999998875 57999999999999999999


Q ss_pred             HHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCC
Q 020274          284 VLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILP  326 (328)
Q Consensus       284 ~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~  326 (328)
                      +|+++|+|++.+|.+|+||||+|+.+++    .+++++|..+.
T Consensus       163 ~Ll~~gad~~~~~~~G~tpl~~A~~~~~----~~~~~~l~~~~  201 (221)
T d1iknd_         163 LLLKCGADVNRVTYQGYSPYQLTWGRPS----TRIQQQLGQLT  201 (221)
T ss_dssp             HHHTTTCCSCCCCTTCCCGGGGCTTSSC----HHHHHHHHTTS
T ss_pred             HHHhcCCcccccCCCCCCHHHHHHHCCC----HHHHHHHHHcC
Confidence            9999999999999999999999999998    89999887764

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.5e-29  Score=231.65  Aligned_cols=190  Identities=27%  Similarity=0.352  Sum_probs=173.2

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCCC-------------------------------CCCCCCCcHHHHHHHhCCHHH
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNLG-------------------------------KISTAKWRPLQTLTLSMQIRY  182 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~~-------------------------------~~~~~g~t~L~~A~~~g~~~~  182 (328)
                      ..++.|+..+..+.++.++..|.+++..                               ..+..+.|||++|+..++.++
T Consensus       167 ~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  246 (408)
T d1n11a_         167 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEM  246 (408)
T ss_dssp             CHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhH
Confidence            4577788888888888888887766532                               134567888999999999999


Q ss_pred             HHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCcccc
Q 020274          183 MDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVA  262 (328)
Q Consensus       183 v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~  262 (328)
                      ++.++..+..++..+..|.|||+.|+..++.+++++|+++|++++..+..+.||||.++..++.++++++++.|++++.+
T Consensus       247 ~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~  326 (408)
T d1n11a_         247 VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK  326 (408)
T ss_dssp             HHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCC
T ss_pred             hhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          263 DNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       263 d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      |..|.||||+|++.|+.++|++|+++|||++.+|.+|+||||+|+..|+    .+|+++|+.+..
T Consensus       327 d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~----~~iv~~L~~~~~  387 (408)
T d1n11a_         327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY----ISVTDVLKVVTD  387 (408)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC----HHHHHHHHHHCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999    899999876543

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-28  Score=218.75  Aligned_cols=189  Identities=26%  Similarity=0.311  Sum_probs=163.5

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCc------------------
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDS------------------  195 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~------------------  195 (328)
                      ..|+.||+.++.+.++.|++.|++++... +..|+||||+|+..|+.+++++|++.|..+..                  
T Consensus         7 ~~L~~Ai~~~~~e~vk~Ll~~G~din~~~-~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (285)
T d1wdya_           7 HLLIKAVQNEDVDLVQQLLEGGANVNFQE-EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSV   85 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccC-CCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCc
Confidence            56899999999999999999999987653 45799999999999999999999998765432                  


Q ss_pred             ----------------------------------------------------------cCCCCCcHHHHHHHcCCHHHHH
Q 020274          196 ----------------------------------------------------------VDKDGLTALHKAIIGKKEAVIS  217 (328)
Q Consensus       196 ----------------------------------------------------------~d~~g~t~L~~A~~~g~~~~v~  217 (328)
                                                                                ....|.||||+|+..|+.++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  165 (285)
T d1wdya_          86 KLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK  165 (285)
T ss_dssp             HHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHH
T ss_pred             cccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHH
Confidence                                                                      1234778888888888888898


Q ss_pred             HHHHC-CCCCCCCCCCCChHHHHHHHcC----CHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCC
Q 020274          218 HLLRK-GANPHVKDGDGATPLHYAVQVG----AMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN-GAD  291 (328)
Q Consensus       218 ~Ll~~-g~d~~~~d~~g~tpLh~A~~~g----~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~-gad  291 (328)
                      +|+++ |++++.++..|.++++.+...+    ...++++|+++|++++.++..|.||||+|+..|+.+++++|+++ |++
T Consensus       166 ~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~d  245 (285)
T d1wdya_         166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE  245 (285)
T ss_dssp             HHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC
T ss_pred             HHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCC
Confidence            88864 7888888888888877765443    35688999999999999999999999999999999999999974 999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          292 KSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       292 ~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                      ++.+|.+|+||||+|+++|+    .+++++|...+.
T Consensus       246 in~~d~~G~TpL~~A~~~~~----~eiv~~Ll~~GA  277 (285)
T d1wdya_         246 INDTDSDGKTALLLAVELKL----KKIAELLCKRGA  277 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTC----HHHHHHHHHHSS
T ss_pred             CcCCCCCCCCHHHHHHHcCC----HHHHHHHHHCCC
Confidence            99999999999999999999    999999987654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-29  Score=214.17  Aligned_cols=182  Identities=23%  Similarity=0.259  Sum_probs=157.7

Q ss_pred             cHHHHHHHHhhChHHHHHHHh----cCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHH
Q 020274          133 EEDLLKEVEQLLEPEEREILN----QNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAI  208 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~----~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~  208 (328)
                      ...|+.|+..+..+.++.|++    .|.+++  ..+..|+||||+|+..|+.+++++|+++|++++.....|.++++.|.
T Consensus         4 ~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in--~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           4 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELD--IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC--CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--ccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            457889999999998888875    566654  44788999999999999999999999999999999999999999998


Q ss_pred             HcCCHHHHHHHHHCCCC-------------------------------------C-CCCCCCCChHHHHHHHcCCHHHHH
Q 020274          209 IGKKEAVISHLLRKGAN-------------------------------------P-HVKDGDGATPLHYAVQVGAMQSVK  250 (328)
Q Consensus       209 ~~g~~~~v~~Ll~~g~d-------------------------------------~-~~~d~~g~tpLh~A~~~g~~~iv~  250 (328)
                      ..++..+++.+......                                     . ......|.+||+.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence            88888777766653211                                     1 112346889999999999999999


Q ss_pred             HHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHH
Q 020274          251 LLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAK  320 (328)
Q Consensus       251 ~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~  320 (328)
                      .++.+|..++.+|..|.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+.+|+    .+|+|
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~----~divk  227 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV----IDILR  227 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHH----HHHHT
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCC----ccccC
Confidence            9999999999999999999999999999999999999999999999999999999999887    67764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.6e-28  Score=197.37  Aligned_cols=152  Identities=26%  Similarity=0.338  Sum_probs=141.9

Q ss_pred             cHHHHHHHHhhChHHHHHHHhc-CCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQ-NATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK  211 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~-g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g  211 (328)
                      ...|+.|+.+|+.+.++.+|+. +.+++  ..+..|+||||+|+ .|+.+++++|++++++++..+..|.+||++++..+
T Consensus         3 g~~L~~Aa~~g~~~~vk~lL~~~~~~~n--~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           3 GDRLSGAAARGDVQEVRRLLHRELVHPD--ALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTT--CCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHhCCCCCC--ccCCCCCccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            4679999999999999999986 44554  45889999999987 58999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020274          212 KEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN  288 (328)
Q Consensus       212 ~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  288 (328)
                      +.+++++++++|++++.++..|+||||+|+..|+.+++++|+ .|++++.+|..|+||||+|+..|+.+++++|++|
T Consensus        80 ~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999999999999999999999999999999999887 6899999999999999999999999999999986

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=1.7e-27  Score=212.80  Aligned_cols=178  Identities=25%  Similarity=0.313  Sum_probs=155.5

Q ss_pred             hHHHHHHHhcCCCCCCCC-------CCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHH
Q 020274          145 EPEEREILNQNATPNLGK-------ISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVIS  217 (328)
Q Consensus       145 ~~~v~~lL~~g~~~~~~~-------~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~  217 (328)
                      .+.++.++....+.+...       ....+.|+|+.||..|++++|++||++|+++|.+|..|.||||+|+..|+.++|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~   90 (291)
T d1s70b_          11 NEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVK   90 (291)
T ss_dssp             HHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeee
Confidence            456666665544443221       1223569999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCcc-------------------------------------
Q 020274          218 HLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVN-------------------------------------  260 (328)
Q Consensus       218 ~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in-------------------------------------  260 (328)
                      +|+++|+++...+..+.+||+.|+..++.++++.|+++|+..+                                     
T Consensus        91 ~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~  170 (291)
T d1s70b_          91 FLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR  170 (291)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             eecccccccccccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhcccccccccccccccc
Confidence            9999999999999999999999999999999999998876543                                     


Q ss_pred             -----------------------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHH
Q 020274          261 -----------------------VADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYD  317 (328)
Q Consensus       261 -----------------------~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~  317 (328)
                                             ..+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+    .+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~----~~  246 (291)
T d1s70b_         171 KEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK----EE  246 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC----HH
T ss_pred             ccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCC----HH
Confidence                                   234567899999999999999999999999999999999999999999999    99


Q ss_pred             HHHHHhhCC
Q 020274          318 LAKLLKILP  326 (328)
Q Consensus       318 i~~lL~~~~  326 (328)
                      ++++|....
T Consensus       247 iv~lLl~~G  255 (291)
T d1s70b_         247 ACRILVENL  255 (291)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHCC
Confidence            999998764

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-27  Score=193.40  Aligned_cols=155  Identities=21%  Similarity=0.287  Sum_probs=147.3

Q ss_pred             ccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcC
Q 020274          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGK  211 (328)
Q Consensus       132 ~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g  211 (328)
                      |...|+.|+..|+.+.++.|++.|++++..  +..|+||||+|+ .|+.+++++|+++|++++.++..|.++|+.++..+
T Consensus         1 ~~~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~--d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           1 WGNELASAAARGDLEQLTSLLQNNVNVNAQ--NGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCC--CTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHCCCCcCcc--CCcccccccccc-cccccccccccccccccccccccCccccccccccc
Confidence            456899999999999999999999988764  889999999886 79999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCC-CccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 020274          212 KEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNV-DVNVADNEGWTPLHIAIQSRNRDIAKVLLING  289 (328)
Q Consensus       212 ~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga-~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  289 (328)
                      ...++..|++.+.+++..+..|.+|||+|+..++.+++++|+++|+ +++.+|..|.||||+|+..++.+++++|+++|
T Consensus        78 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          78 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999986 88999999999999999999999999999987

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.6e-26  Score=212.14  Aligned_cols=184  Identities=27%  Similarity=0.363  Sum_probs=166.8

Q ss_pred             HHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHH
Q 020274          135 DLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEA  214 (328)
Q Consensus       135 ~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~  214 (328)
                      .|+.|+..|+.+.++.+++.|++++..  +..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+
T Consensus         3 pL~~Aa~~g~~~~v~~Ll~~g~~in~~--d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~   80 (408)
T d1n11a_           3 PLHVASFMGHLPIVKNLLQRGASPNVS--NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN   80 (408)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSCCS--SSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred             hHHHHHHCcCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            688999999999999999999887654  788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCC---------------------------------CCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccc
Q 020274          215 VISHLLRKGANP---------------------------------HVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNV  261 (328)
Q Consensus       215 ~v~~Ll~~g~d~---------------------------------~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~  261 (328)
                      ++++|+..+.++                                 +.++..+.++|+.|+..++.+++++|+++|++++.
T Consensus        81 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~  160 (408)
T d1n11a_          81 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA  160 (408)
T ss_dssp             HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            999998765443                                 33466788999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          262 ADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       262 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      .+..|.+|||+|+..|+.+++++|+.+|++++..+..|.||+|+++....    .++..+|..
T Consensus       161 ~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~----~~~~~~l~~  219 (408)
T d1n11a_         161 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ----VEVARSLLQ  219 (408)
T ss_dssp             CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTC----HHHHHHHHH
T ss_pred             CCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccch----hhhhhhhhh
Confidence            99999999999999999999999999999999999999999999998887    666666543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.3e-27  Score=188.43  Aligned_cols=118  Identities=23%  Similarity=0.315  Sum_probs=75.1

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-hHHHHHHHcCCH
Q 020274          168 WRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGA-TPLHYAVQVGAM  246 (328)
Q Consensus       168 ~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~-tpLh~A~~~g~~  246 (328)
                      .++||+|+..|+.++|++|+++|++++.++..|.||||+|+ .|+.+++++|+++|++++.++..+. ||||+|+..|+.
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~   82 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFL   82 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            45666666666666666666666666666666666666443 4666666666666666666655544 466666666666


Q ss_pred             HHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHH
Q 020274          247 QSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLL  286 (328)
Q Consensus       247 ~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll  286 (328)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|+
T Consensus        83 ~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Ll  122 (125)
T d1bi7b_          83 DTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR  122 (125)
T ss_dssp             HHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS
T ss_pred             cccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            6666666666666666666666666666666666666655

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-27  Score=186.86  Aligned_cols=120  Identities=25%  Similarity=0.339  Sum_probs=114.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCC-cHHHHHHHcCC
Q 020274          200 GLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGW-TPLHIAIQSRN  278 (328)
Q Consensus       200 g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~-TpL~~A~~~g~  278 (328)
                      +.++||+|+..|+.++|++|+++|++++.++..|.||||.|+ .|+.+++++|+++|++++.++..|. ||||+|+..|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            568999999999999999999999999999999999999775 7999999999999999999999876 69999999999


Q ss_pred             HHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          279 RDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       279 ~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      .+++++|+++|++++.+|..|+||||+|+.+|+    .+++++|+.
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~----~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH----RDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTC----HHHHHHHSS
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCC----HHHHHHHHh
Confidence            999999999999999999999999999999999    999999864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.7e-26  Score=197.75  Aligned_cols=153  Identities=27%  Similarity=0.254  Sum_probs=134.7

Q ss_pred             CcHHHHHHHhCCHHHHHHHHH-CCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC---CCCCCCh--------
Q 020274          168 WRPLQTLTLSMQIRYMDMLLD-GGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHV---KDGDGAT--------  235 (328)
Q Consensus       168 ~t~L~~A~~~g~~~~v~~Ll~-~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~---~d~~g~t--------  235 (328)
                      .+|||+||..|+.++++.|++ .+.+++.+|.+|+||||+|+..|+.+++++|+++|++++.   .+..|.+        
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            489999999999999999887 6788999999999999999999999999999999998864   3334444        


Q ss_pred             ---------------------------HHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 020274          236 ---------------------------PLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLIN  288 (328)
Q Consensus       236 ---------------------------pLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  288 (328)
                                                 ||+.++..++.+++++|+..|...+.++..|+||||+|+..|+.+++++|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence                                       55555566777788888888888888999999999999999999999999998


Q ss_pred             C-CCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhh
Q 020274          289 G-ADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       289 g-ad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~  324 (328)
                      | .+++.+|..|.||||+|+.+|+    .+++++|..
T Consensus       161 ~~~~in~~d~~g~TpLh~A~~~~~----~~~v~~Ll~  193 (229)
T d1ixva_         161 GKSAVNWQDKQGWTPLFHALAEGH----GDAAVLLVE  193 (229)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHHTTC----HHHHHHHHH
T ss_pred             ccccccccccccCCchhhhccccc----HHHHHHHHH
Confidence            7 7889999999999999999998    899998763

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=6.6e-26  Score=183.56  Aligned_cols=150  Identities=27%  Similarity=0.335  Sum_probs=142.8

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCC
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKK  212 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~  212 (328)
                      ...|+.|++.|..+.++.||+.|++.+   .+..|+||||+|+..++.++++.++.........+..+.++++.++...+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~---~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc---cccCCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            367999999999999999999998765   37889999999999999999999999988888888889999999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 020274          213 EAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVL  285 (328)
Q Consensus       213 ~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~L  285 (328)
                      .+++++++.+|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.+|+.+++++|
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999987

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-26  Score=200.28  Aligned_cols=157  Identities=25%  Similarity=0.292  Sum_probs=139.0

Q ss_pred             CCCcHHHHHHHhCCH----HHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHH
Q 020274          166 AKWRPLQTLTLSMQI----RYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAV  241 (328)
Q Consensus       166 ~g~t~L~~A~~~g~~----~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~  241 (328)
                      +|.||||+|+..|+.    ++++.+...|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            589999999999996    4556667789999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCc------cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCCCC
Q 020274          242 QVGAMQSVKLLIKYNVDV------NVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKT-KDGKTALDMSLCYGRDFK  314 (328)
Q Consensus       242 ~~g~~~iv~~Ll~~ga~i------n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d-~~G~TpL~~A~~~g~~~~  314 (328)
                      ..++.++++.|+..+...      ......|.||||+|+..++.+++++|+..|+.++.++ .+|.||||+|+.+|+   
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~---  157 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN---  157 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC---
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccccccc---
Confidence            999999999999987553      3345568999999999999999999999999998876 579999999999999   


Q ss_pred             hHHHHHHHhhCC
Q 020274          315 SYDLAKLLKILP  326 (328)
Q Consensus       315 ~~~i~~lL~~~~  326 (328)
                       .+++++|....
T Consensus       158 -~~~v~~Ll~~g  168 (221)
T d1iknd_         158 -PDLVSLLLKCG  168 (221)
T ss_dssp             -HHHHHHHHTTT
T ss_pred             -HHHHHHHHhcC
Confidence             99999998764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6.8e-27  Score=211.36  Aligned_cols=150  Identities=24%  Similarity=0.240  Sum_probs=122.1

Q ss_pred             cCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCH-------HHHHHHHHCCCCC
Q 020274          154 QNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKE-------AVISHLLRKGANP  226 (328)
Q Consensus       154 ~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~-------~~v~~Ll~~g~d~  226 (328)
                      .+.+++. ..|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+||..++.       .++++|..   .+
T Consensus        95 ~~~dvn~-~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~  170 (301)
T d1sw6a_          95 TQLNLNI-PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CL  170 (301)
T ss_dssp             SCCCSCS-CCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GG
T ss_pred             cCCCcCc-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hh
Confidence            3444443 2378899999999999999999999999999999999999999999987642       34444433   45


Q ss_pred             CCCCCCCChHHHHHHHcCC----HH--------HHHHHHhCCCC------------------------------------
Q 020274          227 HVKDGDGATPLHYAVQVGA----MQ--------SVKLLIKYNVD------------------------------------  258 (328)
Q Consensus       227 ~~~d~~g~tpLh~A~~~g~----~~--------iv~~Ll~~ga~------------------------------------  258 (328)
                      +.+|..|+||||+++..+.    ..        ++.+++..+..                                    
T Consensus       171 ~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (301)
T d1sw6a_         171 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN  250 (301)
T ss_dssp             GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred             hhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhc
Confidence            6678899999999886543    22        33344443221                                    


Q ss_pred             -ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q 020274          259 -VNVADNEGWTPLHIAIQSRNRDIAKVLLINGADKSRKTKDGKTALDMSL  307 (328)
Q Consensus       259 -in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~  307 (328)
                       +|.+|..|+||||+|++.|+.++|++|+++|||++++|..|.|||++|+
T Consensus       251 ~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         251 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence             6788999999999999999999999999999999999999999999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=3e-27  Score=184.55  Aligned_cols=105  Identities=30%  Similarity=0.430  Sum_probs=87.9

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHH
Q 020274          202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI  281 (328)
Q Consensus       202 t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~i  281 (328)
                      |||++|+..|+.++|++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~   83 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC   83 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhh
Confidence            68888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHcCCCCCCCCCCCCcHHHHH
Q 020274          282 AKVLLINGADKSRKTKDGKTALDMS  306 (328)
Q Consensus       282 v~~Ll~~gad~~~~d~~G~TpL~~A  306 (328)
                      +++|+++|+|++.+|..|+||||+|
T Consensus        84 v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          84 VKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhcccccceeeCCCCCCHHHHH
Confidence            8888888888888888888888877

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.4e-27  Score=186.50  Aligned_cols=106  Identities=25%  Similarity=0.283  Sum_probs=104.1

Q ss_pred             cHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHH
Q 020274          169 RPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQS  248 (328)
Q Consensus       169 t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~i  248 (328)
                      |||++|+..|+.++|++|+++|++++.++..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~   83 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC   83 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhh
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCccccCCCCCcHHHHHH
Q 020274          249 VKLLIKYNVDVNVADNEGWTPLHIAI  274 (328)
Q Consensus       249 v~~Ll~~ga~in~~d~~g~TpL~~A~  274 (328)
                      +++|+++|++++.+|..|.||||+|.
T Consensus        84 v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          84 VKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhcccccceeeCCCCCCHHHHHh
Confidence            99999999999999999999999983

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.3e-26  Score=179.96  Aligned_cols=119  Identities=22%  Similarity=0.282  Sum_probs=65.1

Q ss_pred             cHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHH
Q 020274          169 RPLQTLTLSMQIRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQS  248 (328)
Q Consensus       169 t~L~~A~~~g~~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~i  248 (328)
                      ++|+.|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHhCCCCccccCC-CCCcHHHHH--HHcCCHHHHHHHHH
Q 020274          249 VKLLIKYNVDVNVADN-EGWTPLHIA--IQSRNRDIAKVLLI  287 (328)
Q Consensus       249 v~~Ll~~ga~in~~d~-~g~TpL~~A--~~~g~~~iv~~Ll~  287 (328)
                      +++|+++|++++..+. .|.||++++  +..|+.+++++|+.
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            5555555555554432 344544433  33455555555553

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.3e-26  Score=179.95  Aligned_cols=119  Identities=30%  Similarity=0.459  Sum_probs=111.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHH
Q 020274          202 TALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDI  281 (328)
Q Consensus       202 t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~i  281 (328)
                      ++|+.||..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~   82 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV   82 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCC-CCCcHHHHH--HHcCCCCChHHHHHHHhh
Q 020274          282 AKVLLINGADKSRKTK-DGKTALDMS--LCYGRDFKSYDLAKLLKI  324 (328)
Q Consensus       282 v~~Ll~~gad~~~~d~-~G~TpL~~A--~~~g~~~~~~~i~~lL~~  324 (328)
                      +++|+++|++++.++. .|+||++++  +..|+    .+|+++|..
T Consensus        83 v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~----~eiv~~L~~  124 (130)
T d1ycsb1          83 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGY----TQCSQFLYG  124 (130)
T ss_dssp             HHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTC----CCHHHHHHH
T ss_pred             HHHHHHcCCCcccccCCCCCCHHHHHHHHHcCh----HHHHHHHHh
Confidence            9999999999998875 588988876  45676    789998864

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.92  E-value=2.1e-27  Score=219.10  Aligned_cols=188  Identities=13%  Similarity=0.076  Sum_probs=151.3

Q ss_pred             cHHHHHHHHhhChHHHHH---HHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCCCCCccC--CCCCcHHHHH
Q 020274          133 EEDLLKEVEQLLEPEERE---ILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGLDIDSVD--KDGLTALHKA  207 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~---lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gadi~~~d--~~g~t~L~~A  207 (328)
                      ...++.|+..|..+.++.   +++.|++++.  .+..|+||||+||..|+.++|++|++.|++++..+  ..|.||||+|
T Consensus        91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~--~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A  168 (346)
T d2ajaa1          91 EVICFVAAITGCSSALDTLCLLLTSDEIVKV--IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA  168 (346)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC----CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHH
T ss_pred             CcHHHHHHHhCCHHHHHHHHHHHhCCCcccc--cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHH
Confidence            456888999998776554   5777776655  47889999999999999999999999999998875  4589999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCC---CCCCCCChHHHHHHHcCCHHHHHHHHhCCCCccccC---------------------
Q 020274          208 IIGKKEAVISHLLRKGANPH---VKDGDGATPLHYAVQVGAMQSVKLLIKYNVDVNVAD---------------------  263 (328)
Q Consensus       208 ~~~g~~~~v~~Ll~~g~d~~---~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga~in~~d---------------------  263 (328)
                      |..|+.++|++|++.|+++.   ..+..|.||+|.|+.+|+.++|++|+++|++++..+                     
T Consensus       169 a~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (346)
T d2ajaa1         169 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR  248 (346)
T ss_dssp             HHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhcc
Confidence            99999999999999997653   334567788889999999999999999876543211                     


Q ss_pred             ------------CC----------------CCcHHHHHHHcCCHHHHHHHHHcCCC-----CCCCCCCCCcHHHHHHHcC
Q 020274          264 ------------NE----------------GWTPLHIAIQSRNRDIAKVLLINGAD-----KSRKTKDGKTALDMSLCYG  310 (328)
Q Consensus       264 ------------~~----------------g~TpL~~A~~~g~~~iv~~Ll~~gad-----~~~~d~~G~TpL~~A~~~g  310 (328)
                                  ..                +.++|+.|+..++.+++++|++.++.     .+..+.+|+||||+|++.|
T Consensus       249 ~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~G  328 (346)
T d2ajaa1         249 LKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLG  328 (346)
T ss_dssp             HHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHT
T ss_pred             chHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcC
Confidence                        11                12577778788899999999988764     4455567999999999999


Q ss_pred             CCCChHHHHHHHhhCC
Q 020274          311 RDFKSYDLAKLLKILP  326 (328)
Q Consensus       311 ~~~~~~~i~~lL~~~~  326 (328)
                      +    .+++++|..+|
T Consensus       329 n----~e~v~lLL~~p  340 (346)
T d2ajaa1         329 N----QGACALLLSIP  340 (346)
T ss_dssp             C----TTHHHHHTTSH
T ss_pred             c----HHHHHHHhCCC
Confidence            9    89999998876

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.1e-24  Score=188.26  Aligned_cols=164  Identities=24%  Similarity=0.345  Sum_probs=145.7

Q ss_pred             HHHHHHHHhhChHHHHHHHhcCCCCCCCC--------CCCCCCcHHHHHHHhCCHHHHHHHHH-CCCCCCccCCCCCcHH
Q 020274          134 EDLLKEVEQLLEPEEREILNQNATPNLGK--------ISTAKWRPLQTLTLSMQIRYMDMLLD-GGLDIDSVDKDGLTAL  204 (328)
Q Consensus       134 ~~l~~ai~~~~~~~v~~lL~~g~~~~~~~--------~~~~g~t~L~~A~~~g~~~~v~~Ll~-~gadi~~~d~~g~t~L  204 (328)
                      ..+..++..+....+..++....+.+...        ....|.||||+|+..|+.+++++|++ .|++++..+..|.+++
T Consensus       107 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~  186 (285)
T d1wdya_         107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL  186 (285)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHH
T ss_pred             chhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCccc
Confidence            35777888888888888888776655432        34568999999999999999999997 5899999999999988


Q ss_pred             HHHHH----cCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhC-CCCccccCCCCCcHHHHHHHcCCH
Q 020274          205 HKAII----GKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKY-NVDVNVADNEGWTPLHIAIQSRNR  279 (328)
Q Consensus       205 ~~A~~----~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-ga~in~~d~~g~TpL~~A~~~g~~  279 (328)
                      +.+..    .+...++++|+++|++++.++..|.||||+|+..|+.++|++|+++ |++++.+|..|.||||+|+..|+.
T Consensus       187 ~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~  266 (285)
T d1wdya_         187 IHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLK  266 (285)
T ss_dssp             HHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCH
Confidence            87654    3345799999999999999999999999999999999999999985 999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCC
Q 020274          280 DIAKVLLINGADKSRKTK  297 (328)
Q Consensus       280 ~iv~~Ll~~gad~~~~d~  297 (328)
                      ++|++||++|||+|.+|.
T Consensus       267 eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         267 KIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHHHHHSSCSCCSSC
T ss_pred             HHHHHHHHCCCCCCcccC
Confidence            999999999999999884

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=1.6e-24  Score=191.21  Aligned_cols=156  Identities=23%  Similarity=0.287  Sum_probs=136.5

Q ss_pred             ccccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCCC---C--------------
Q 020274          130 SKYEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGGL---D--------------  192 (328)
Q Consensus       130 ~~~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga---d--------------  192 (328)
                      ......|+-|+..+..+.++.|++.|++++..  +..|.|||++|+..++.+++++++..+.   .              
T Consensus        72 ~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~--~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  149 (277)
T d2fo1e1          72 CDENTPLMLAVLARRRRLVAYLMKAGADPTIY--NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI  149 (277)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC--CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHH
T ss_pred             CCCCeeeccccccccccccccccccccccccc--cccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHH
Confidence            34456799999999999999999999987764  7789999999999999988887765320   0              


Q ss_pred             ------------------------------CCccCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCChHHHHHH
Q 020274          193 ------------------------------IDSVDKDGLTALHKAIIGKKEAVISHLL-RKGANPHVKDGDGATPLHYAV  241 (328)
Q Consensus       193 ------------------------------i~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~d~~~~d~~g~tpLh~A~  241 (328)
                                                    .+..+..|.||||+++..++.+++++++ ..+.+++.+|..|+||||+|+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~  229 (277)
T d2fo1e1         150 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA  229 (277)
T ss_dssp             HHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH
T ss_pred             HHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHH
Confidence                                          1123456899999999999999998754 678999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 020274          242 QVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLI  287 (328)
Q Consensus       242 ~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~  287 (328)
                      ..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|++
T Consensus       230 ~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         230 QEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999985

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=5.4e-24  Score=173.64  Aligned_cols=122  Identities=23%  Similarity=0.339  Sum_probs=101.4

Q ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCcc------CCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCChHHHHH
Q 020274          170 PLQTLTLSMQIRYMDMLLDGGLDIDSV------DKDGLTALHKAIIG---KKEAVISHLLRKGANPHVKDGDGATPLHYA  240 (328)
Q Consensus       170 ~L~~A~~~g~~~~v~~Ll~~gadi~~~------d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A  240 (328)
                      .|..|+..+++..+..++..|++++.+      +..|+||||+|+..   +..++|++|+++|++++.+|..|+||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            355677778887777777777776654      56688899988864   677888899988999988888899999999


Q ss_pred             HHcCCHHHHHHHHhCCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 020274          241 VQVGAMQSVKLLIKYNVDVNVADNEGWTPLHIAIQSRNRDIAKVLLINGAD  291 (328)
Q Consensus       241 ~~~g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad  291 (328)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++.++.
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999998888899999999999999999988887654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.4e-23  Score=171.20  Aligned_cols=119  Identities=22%  Similarity=0.271  Sum_probs=109.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCC------CCCCChHHHHHHHc---CCHHHHHHHHhCCCCccccCCCCCcHHHHH
Q 020274          203 ALHKAIIGKKEAVISHLLRKGANPHVK------DGDGATPLHYAVQV---GAMQSVKLLIKYNVDVNVADNEGWTPLHIA  273 (328)
Q Consensus       203 ~L~~A~~~g~~~~v~~Ll~~g~d~~~~------d~~g~tpLh~A~~~---g~~~iv~~Ll~~ga~in~~d~~g~TpL~~A  273 (328)
                      .|+.|++.+....+..++..|++++.+      +..|+||||+|+..   +..+++++|+++|++++.+|..|+||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            456778999999999999999987754      66899999999975   678999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhC
Q 020274          274 IQSRNRDIAKVLLINGADKSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKIL  325 (328)
Q Consensus       274 ~~~g~~~iv~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~  325 (328)
                      +..|+.+++++|+++|++++.+|..|+||||+|+.+|+    .+|+++|...
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~----~~i~~~L~~~  136 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKH----EHCEELLTQA  136 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC----HHHHHHHHHH
T ss_pred             cccccccccccccccCccccccCCCCCCHHHHHHHcCC----HHHHHHHHHh
Confidence            99999999999999999999999999999999999999    9999998764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1e-23  Score=178.20  Aligned_cols=149  Identities=23%  Similarity=0.247  Sum_probs=129.2

Q ss_pred             cHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHHCC----------------------
Q 020274          133 EEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQIRYMDMLLDGG----------------------  190 (328)
Q Consensus       133 ~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g----------------------  190 (328)
                      ...|+.|+..+..+.++.|++.|++.+..  ...+.++++.|...++..+++.+....                      
T Consensus        41 ~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  118 (228)
T d1k1aa_          41 QTPLHLAVITTLPSVVRLLVTAGASPMAL--DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV  118 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHH
T ss_pred             Cccceehhccccccccccccccccccccc--ccccccccccccccccccchhhhhhcccccccccccccccccccccccc
Confidence            45799999999999999999999887754  567788888888888887777665422                      


Q ss_pred             ---------------CCC-CccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHh
Q 020274          191 ---------------LDI-DSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIK  254 (328)
Q Consensus       191 ---------------adi-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~  254 (328)
                                     .+. ......+.++|+.|+..+...+++.++++|.+++.++..|.||||+|+..|+.+++++|++
T Consensus       119 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~  198 (228)
T d1k1aa_         119 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR  198 (228)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred             ccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHH
Confidence                           111 1133468899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccCCCCCcHHHHHHHcCCHHHHH
Q 020274          255 YNVDVNVADNEGWTPLHIAIQSRNRDIAK  283 (328)
Q Consensus       255 ~ga~in~~d~~g~TpL~~A~~~g~~~iv~  283 (328)
                      +|++++.+|..|+||||+|+..|+.++||
T Consensus       199 ~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         199 SGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             TTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             CCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            99999999999999999999999999885

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=1.7e-22  Score=171.21  Aligned_cols=152  Identities=23%  Similarity=0.304  Sum_probs=137.1

Q ss_pred             ccHHHHHHHHhhChHHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHhCC--------------------------------
Q 020274          132 YEEDLLKEVEQLLEPEEREILNQNATPNLGKISTAKWRPLQTLTLSMQ--------------------------------  179 (328)
Q Consensus       132 ~~~~l~~ai~~~~~~~v~~lL~~g~~~~~~~~~~~g~t~L~~A~~~g~--------------------------------  179 (328)
                      -...|+-|+..|..+.++.|++.|.+++..  +..+.++++.++..++                                
T Consensus        23 G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (209)
T d1ot8a_          23 GETSLHLAARFARADAAKRLLDAGADANSQ--DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARL  100 (209)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhhccccccc--cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            346799999999999999999999887654  5666777777765554                                


Q ss_pred             --HHHHHHHHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCHHHHHHHHhCCC
Q 020274          180 --IRYMDMLLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAMQSVKLLIKYNV  257 (328)
Q Consensus       180 --~~~v~~Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ga  257 (328)
                        ..+.+.|+..+++++.++..|.|||++++..+...+++.|+.++.+++.+|..|.||||+|+..|+.++|++|+++|+
T Consensus       101 ~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga  180 (209)
T d1ot8a_         101 AIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFA  180 (209)
T ss_dssp             TCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCC
Confidence              345667788889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHH
Q 020274          258 DVNVADNEGWTPLHIAIQSRNRDIAKVL  285 (328)
Q Consensus       258 ~in~~d~~g~TpL~~A~~~g~~~iv~~L  285 (328)
                      +++.+|..|+||||+|++.|+.++|++|
T Consensus       181 d~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         181 NREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=4e-25  Score=203.64  Aligned_cols=131  Identities=10%  Similarity=0.052  Sum_probs=113.6

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHH---HHHCCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC--CCCChHH
Q 020274          163 ISTAKWRPLQTLTLSMQIRYMDM---LLDGGLDIDSVDKDGLTALHKAIIGKKEAVISHLLRKGANPHVKD--GDGATPL  237 (328)
Q Consensus       163 ~~~~g~t~L~~A~~~g~~~~v~~---Ll~~gadi~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d--~~g~tpL  237 (328)
                      .+..|.||||+|+..|+.+++++   |++.|++++.++..|+||||+||..|+.++|++|+++|++++..+  ..|+|||
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L  165 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF  165 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChh
Confidence            36688999999999999877665   789999999999999999999999999999999999999998765  3599999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCCcc---ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 020274          238 HYAVQVGAMQSVKLLIKYNVDVN---VADNEGWTPLHIAIQSRNRDIAKVLLINGADKS  293 (328)
Q Consensus       238 h~A~~~g~~~iv~~Ll~~ga~in---~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~  293 (328)
                      |+|+..|+.++|++|+++|++..   ..+..|.||+|.|+..|+.++|++|+++|++++
T Consensus       166 ~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         166 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc
Confidence            99999999999999999997653   344567788889999999999999999998765

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=4e-21  Score=173.02  Aligned_cols=139  Identities=19%  Similarity=0.210  Sum_probs=110.9

Q ss_pred             HHHHHHHCCCCCCcc-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCChHHHHHHHcCCH-------HHHHHHH
Q 020274          182 YMDMLLDGGLDIDSV-DKDGLTALHKAIIGKKEAVISHLLRKGANPHVKDGDGATPLHYAVQVGAM-------QSVKLLI  253 (328)
Q Consensus       182 ~v~~Ll~~gadi~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpLh~A~~~g~~-------~iv~~Ll  253 (328)
                      +...+...++++|.. |..|+||||+||..|+.++|++|+++|++++.+|..|+||||.|+..++.       .++++|.
T Consensus        88 ~~~~~~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~  167 (301)
T d1sw6a_          88 VNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY  167 (301)
T ss_dssp             HHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred             HHhcCCccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh
Confidence            333334467888876 89999999999999999999999999999999999999999999987652       3444443


Q ss_pred             hCCCCccccCCCCCcHHHHHHHcCC----HH--------HHHHHHHcCCC------------------------------
Q 020274          254 KYNVDVNVADNEGWTPLHIAIQSRN----RD--------IAKVLLINGAD------------------------------  291 (328)
Q Consensus       254 ~~ga~in~~d~~g~TpL~~A~~~g~----~~--------iv~~Ll~~gad------------------------------  291 (328)
                         ..++..|..|+||||+++..+.    ..        ++.+++..+..                              
T Consensus       168 ---~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (301)
T d1sw6a_         168 ---PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL  244 (301)
T ss_dssp             ---GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSH
T ss_pred             ---hhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhh
Confidence               4567788999999999886543    22        33444444332                              


Q ss_pred             -------CCCCCCCCCcHHHHHHHcCCCCChHHHHHHHhhCCC
Q 020274          292 -------KSRKTKDGKTALDMSLCYGRDFKSYDLAKLLKILPV  327 (328)
Q Consensus       292 -------~~~~d~~G~TpL~~A~~~g~~~~~~~i~~lL~~~~~  327 (328)
                             +|.+|..|+||||+|++.|+    .+++++|.....
T Consensus       245 ~~~~~~~in~~D~~G~TpLh~A~~~g~----~~iv~~Ll~~GA  283 (301)
T d1sw6a_         245 KWIIANMLNAQDSNGDTCLNIAARLGN----ISIVDALLDYGA  283 (301)
T ss_dssp             HHHHHHTTTCCCTTSCCHHHHHHHHCC----HHHHHHHHHTTC
T ss_pred             HHHHhcCccCCCCCCCCHHHHHHHcCC----HHHHHHHHHCCC
Confidence                   68899999999999999999    999999987654