Citrus Sinensis ID: 020289

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MEEMMVVLDEEELLGCCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSPSSQWSKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFSAKAKASSATFQYSATAKTAEEDRVSIIEGHLCASTEASAGKISQIPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYCPEGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS
cccccccccHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccEEEEccccccccccccccccccccccEEEEEEEEEccccccccccEEEEEEEEEccccccccccccccccccccccccc
ccEEEEEccHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHccHHHHHHHHHHccHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccEEEEEEccccccccccEEEEEEEcccccccccccccccccEEEEEEEEcccccccccccccccccccEEEEEEEcccccccccccEEEEEEEEcccccccccEEEEEEccccccccccc
MEEMMVVLDeeellgccgstkfakemasaspfasLNQAVSAARHIWFNLVDVngwldafsahpqigqspssqwskAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKrytnrpiiEFEIAAQEQMKITELRLAKLFSAkakassatfqysataktaeEDRVSIIEGHlcasteasagkisqiptrtrlpitthvldvsqgspaagVEVRLEMWkgiqprplfgetdvsgwvyqgssttnkdgrcgqlmgmiedlnpgfykitfntgkycpegffpYVSIVFEIREsqkrehfhvplllspfsfttyrgs
MEEMMVVLDEEELLGCCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSPSSQWSKAEQSTALAtanesssqelsDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFSAkakassatfqysataktaeeDRVSIIEGHLCasteasagkisqiptrtrlPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGssttnkdgrcGQLMGMIEDLNPGFYKITFNTGKYCPEGFFPYVSIVFEIRESQKREhfhvplllspfsfttyrgs
meemmvvldeeellGCCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSPSSQWSKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITElrlaklfsakakassaTFQYSATAKTAEEDRVSIIEGHLCASTEASAGKISQIPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYCPEGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS
*****VVLDEEELLGCCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSA*********************************DWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFSAKA*****TFQY**********RVSIIEGHLCASTEASAGKISQIPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYCPEGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTT****
*******LDEEELLGCCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQ************************SSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAK********************************************************TTHVLDVSQGSPAAGVEVRLEMWKGIQPR*LFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYCPEGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS
MEEMMVVLDEEELLGCCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHP******************************SDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFSA*******************EDRVSIIEGHLCASTEASAGKISQIPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYCPEGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS
*EEMMVVLDEEELLGCCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSPSSQWS*A******ATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFSA*******************ED****IEG********************RLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYCPEGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTY***
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MEEMMVVLDEEELLGCCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSPSSQWSKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFSAKAKASSATFQYSATAKTAEEDRVSIIEGHLCASTEASAGKISQIPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYCPEGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query328 2.2.26 [Sep-21-2011]
Q9LVM5324 Uric acid degradation bif yes no 0.966 0.978 0.569 1e-100
Q9CRB3118 5-hydroxyisourate hydrola yes no 0.326 0.906 0.452 6e-19
Q06S87138 5-hydroxyisourate hydrola yes no 0.405 0.963 0.374 3e-18
Q9I3J5126 5-hydroxyisourate hydrola yes no 0.323 0.841 0.375 2e-15
Q8Z7Q6136 5-hydroxyisourate hydrola N/A no 0.320 0.772 0.379 3e-14
Q4VYA5136 5-hydroxyisourate hydrola N/A no 0.320 0.772 0.379 3e-14
Q8ZQ52136 5-hydroxyisourate hydrola yes no 0.320 0.772 0.379 3e-14
O44578136 Probable 5-hydroxyisourat yes no 0.375 0.904 0.349 3e-14
Q21882135 Probable 5-hydroxyisourat no no 0.341 0.829 0.365 4e-14
P76341137 5-hydroxyisourate hydrola N/A no 0.320 0.766 0.362 8e-13
>sp|Q9LVM5|TTHL_ARATH Uric acid degradation bifunctional protein TTL OS=Arabidopsis thaliana GN=TTL PE=1 SV=1 Back     alignment and function desciption
 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/332 (56%), Positives = 237/332 (71%), Gaps = 15/332 (4%)

Query: 4   MMVVLDEEELLGCCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHP 63
           M + + E+E   CCGS++FAK+M+++ P  S  +A+  AR IWFN V+V  WL+AFSAHP
Sbjct: 1   MAMEIGEDEWKVCCGSSEFAKQMSTSGPLTS-QEAIYTARDIWFNQVNVTDWLEAFSAHP 59

Query: 64  QIGQSPS-------SQWSKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRT 116
           QIG +PS       ++ S +EQSTA AT + S+ QEL++WN  Y+ +FGFIFIICASGRT
Sbjct: 60  QIGNTPSPSINSDFARRSVSEQSTAFATTSASALQELAEWNVLYKKKFGFIFIICASGRT 119

Query: 117 AAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFSAKAKASSATFQYSATAKTAE 176
            AE+L  LK+RY NRPI+E EIAA EQMKITELR+AKLFS KAK  S T   S+   T  
Sbjct: 120 HAEMLHALKERYENRPIVELEIAAMEQMKITELRMAKLFSDKAKVISETDSSSSPVSTKP 179

Query: 177 EDRVSIIEGHLCASTEASAGKISQIPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQ 236
           +DR+ II GHL  + EA A      P R+R PITTHVLDVS+G+PAAGVEV LE+W G  
Sbjct: 180 QDRLRIIGGHLNVAAEAKA------PKRSRPPITTHVLDVSRGAPAAGVEVHLEVWSGTT 233

Query: 237 PRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYCPEGFFPYV 296
             P F       W   G+S T++DGR G LM +++ LNPG Y+I+F+T KY P  FFPYV
Sbjct: 234 -GPSFVHGGGGVWSSVGTSATDRDGRSGPLMDLVDALNPGTYRISFDTAKYSPGCFFPYV 292

Query: 297 SIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 328
           SIVF++ ESQK EHFHVPLLL+PFSF+TYRGS
Sbjct: 293 SIVFQVTESQKWEHFHVPLLLAPFSFSTYRGS 324
Involved in the last two steps of the degradation of uric acid, i.e. the hydrolysis of 5-hydroxyisourate (HIU) to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) and its stereoselective decarboxylation to (S)-allantoin. Might function as a negative regulator to modulate brassinosteroid-mediated plant growth.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 2EC: .EC: 1EC: 7
>sp|Q9CRB3|HIUH_MOUSE 5-hydroxyisourate hydrolase OS=Mus musculus GN=Urah PE=1 SV=1 Back     alignment and function description
>sp|Q06S87|HIUH_DANRE 5-hydroxyisourate hydrolase OS=Danio rerio GN=urah PE=1 SV=1 Back     alignment and function description
>sp|Q9I3J5|HIUH_PSEAE 5-hydroxyisourate hydrolase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA1518 PE=3 SV=1 Back     alignment and function description
>sp|Q8Z7Q6|HIUH_SALTI 5-hydroxyisourate hydrolase OS=Salmonella typhi GN=hiuH PE=3 SV=1 Back     alignment and function description
>sp|Q4VYA5|HIUH_SALDU 5-hydroxyisourate hydrolase OS=Salmonella dublin GN=hiuH PE=1 SV=1 Back     alignment and function description
>sp|Q8ZQ52|HIUH_SALTY 5-hydroxyisourate hydrolase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=hiuH PE=3 SV=1 Back     alignment and function description
>sp|O44578|HIUH2_CAEEL Probable 5-hydroxyisourate hydrolase ZK697.8 OS=Caenorhabditis elegans GN=ZK697.8 PE=3 SV=2 Back     alignment and function description
>sp|Q21882|HIUH1_CAEEL Probable 5-hydroxyisourate hydrolase R09H10.3 OS=Caenorhabditis elegans GN=R09H10.3 PE=1 SV=2 Back     alignment and function description
>sp|P76341|HIUH_ECOLI 5-hydroxyisourate hydrolase OS=Escherichia coli (strain K12) GN=hiuH PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query328
225443200327 PREDICTED: uric acid degradation bifunct 0.978 0.981 0.730 1e-139
359483124334 PREDICTED: uric acid degradation bifunct 0.990 0.973 0.718 1e-139
298204732330 unnamed protein product [Vitis vinifera] 0.978 0.972 0.724 1e-139
255571151335 carrier, putative [Ricinus communis] gi| 0.981 0.961 0.706 1e-135
363808046332 uncharacterized protein LOC100788368 [Gl 0.987 0.975 0.690 1e-133
358248267332 uncharacterized protein LOC100805930 [Gl 0.987 0.975 0.678 1e-131
449432313336 PREDICTED: uric acid degradation bifunct 0.972 0.949 0.695 1e-131
449480001336 PREDICTED: LOW QUALITY PROTEIN: uric aci 0.972 0.949 0.692 1e-130
224065296289 predicted protein [Populus trichocarpa] 0.881 1.0 0.682 1e-120
358344854321 5-hydroxyisourate hydrolase [Medicago tr 0.948 0.968 0.620 1e-116
>gi|225443200|ref|XP_002268793.1| PREDICTED: uric acid degradation bifunctional protein TTL-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/323 (73%), Positives = 273/323 (84%), Gaps = 2/323 (0%)

Query: 8   LDEEELLGCCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQ 67
           ++E++ L CCGS KFA+EM S+ PFA+L+QA+ AAR IWFN VDVNGWL+AF+AHPQIGQ
Sbjct: 5   MEEKDFLACCGSKKFAEEMTSSGPFANLDQAIDAARDIWFNKVDVNGWLEAFAAHPQIGQ 64

Query: 68  SPSS--QWSKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELK 125
           +PSS  +WSK EQSTAL TA +SS QELSDWN RY  +FGF+F+ICASGRTA+EILAELK
Sbjct: 65  NPSSSQKWSKGEQSTALQTATDSSLQELSDWNARYWKKFGFVFLICASGRTASEILAELK 124

Query: 126 KRYTNRPIIEFEIAAQEQMKITELRLAKLFSAKAKASSATFQYSATAKTAEEDRVSIIEG 185
           +RY NRPI+EFEIAAQEQMK+TELRLAKLFS + KA+S + Q   TA     DRVSII  
Sbjct: 125 RRYPNRPIVEFEIAAQEQMKVTELRLAKLFSTQVKAASISTQNPETAAKKAGDRVSIIGA 184

Query: 186 HLCASTEASAGKISQIPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETD 245
           HL A++EASAGK  QI  RTR PITTHVLDV++GSPAAG+EVRLEMWKG QPRPLFG+ D
Sbjct: 185 HLTATSEASAGKTPQISPRTRPPITTHVLDVARGSPAAGIEVRLEMWKGNQPRPLFGQED 244

Query: 246 VSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYCPEGFFPYVSIVFEIRES 305
             GWV +GSS T+KDGR GQLM MI+ LNPG YKI+FNTGKYCP GFFPYVSI+FEI+ES
Sbjct: 245 EGGWVLEGSSITDKDGRSGQLMSMIDALNPGIYKISFNTGKYCPSGFFPYVSILFEIKES 304

Query: 306 QKREHFHVPLLLSPFSFTTYRGS 328
           QK EHFHVPLLLSPFSF+TYRGS
Sbjct: 305 QKWEHFHVPLLLSPFSFSTYRGS 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359483124|ref|XP_003632908.1| PREDICTED: uric acid degradation bifunctional protein TTL-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|298204732|emb|CBI25230.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255571151|ref|XP_002526526.1| carrier, putative [Ricinus communis] gi|223534201|gb|EEF35917.1| carrier, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|363808046|ref|NP_001242467.1| uncharacterized protein LOC100788368 [Glycine max] gi|255644760|gb|ACU22882.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|358248267|ref|NP_001239851.1| uncharacterized protein LOC100805930 [Glycine max] gi|255648125|gb|ACU24517.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449432313|ref|XP_004133944.1| PREDICTED: uric acid degradation bifunctional protein TTL-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449480001|ref|XP_004155772.1| PREDICTED: LOW QUALITY PROTEIN: uric acid degradation bifunctional protein TTL-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224065296|ref|XP_002301761.1| predicted protein [Populus trichocarpa] gi|222843487|gb|EEE81034.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358344854|ref|XP_003636501.1| 5-hydroxyisourate hydrolase [Medicago truncatula] gi|355502436|gb|AES83639.1| 5-hydroxyisourate hydrolase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query328
TAIR|locus:2161208324 TTL "transthyretin-like protei 0.929 0.941 0.546 1e-84
MGI|MGI:1916142118 1190003J15Rik "RIKEN cDNA 1190 0.326 0.906 0.452 2.5e-19
RGD|1309350141 RGD1309350 "similar to transth 0.326 0.758 0.452 2.5e-19
ZFIN|ZDB-GENE-060825-253138 urah "HIU hydrolase" [Danio re 0.405 0.963 0.380 5.8e-18
UNIPROTKB|F1S6P3118 LOC100522550 "Uncharacterized 0.329 0.915 0.424 6.7e-17
UNIPROTKB|Q47UL3113 CPS_4870 "5-hydroxyisourate hy 0.323 0.938 0.411 1.4e-16
TIGR_CMR|CPS_4870113 CPS_4870 "conserved hypothetic 0.323 0.938 0.411 1.4e-16
UNIPROTKB|G4N1C8171 MGG_09534 "5-hydroxyisourate h 0.182 0.350 0.415 1.5e-15
WB|WBGene00022808136 ZK697.8 [Caenorhabditis elegan 0.375 0.904 0.356 2.8e-15
WB|WBGene00011181135 R09H10.3 [Caenorhabditis elega 0.341 0.829 0.388 5e-15
TAIR|locus:2161208 TTL "transthyretin-like protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 175/320 (54%), Positives = 220/320 (68%)

Query:    16 CCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSPS----S 71
             CCGS++FAK+M+++ P  S  +A+  AR IWFN V+V  WL+AFSAHPQIG +PS    S
Sbjct:    13 CCGSSEFAKQMSTSGPLTS-QEAIYTARDIWFNQVNVTDWLEAFSAHPQIGNTPSPSINS 71

Query:    72 QWSK---AEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRY 128
              +++   +EQSTA AT + S+ QEL++WN  Y+ +FGFIFIICASGRT AE+L  LK+RY
Sbjct:    72 DFARRSVSEQSTAFATTSASALQELAEWNVLYKKKFGFIFIICASGRTHAEMLHALKERY 131

Query:   129 TNRPIIEFEIAAQEQMKITEXXXXXXXXXXXXXXXXTFQYSATAKTAEEDRVSIIEGHLC 188
              NRPI+E EIAA EQMKITE                T   S+   T  +DR+ II GHL 
Sbjct:   132 ENRPIVELEIAAMEQMKITELRMAKLFSDKAKVISETDSSSSPVSTKPQDRLRIIGGHLN 191

Query:   189 ASTEASAGKISQIPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSG 248
              + EA A      P R+R PITTHVLDVS+G+PAAGVEV LE+W G    P F       
Sbjct:   192 VAAEAKA------PKRSRPPITTHVLDVSRGAPAAGVEVHLEVWSGTTG-PSFVHGGGGV 244

Query:   249 WVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYCPEGFFPYVSIVFEIRESQKR 308
             W   G+S T++DGR G LM +++ LNPG Y+I+F+T KY P  FFPYVSIVF++ ESQK 
Sbjct:   245 WSSVGTSATDRDGRSGPLMDLVDALNPGTYRISFDTAKYSPGCFFPYVSIVFQVTESQKW 304

Query:   309 EHFHVPLLLSPFSFTTYRGS 328
             EHFHVPLLL+PFSF+TYRGS
Sbjct:   305 EHFHVPLLLAPFSFSTYRGS 324
GO:0005576 "extracellular region" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0001560 "regulation of cell growth by extracellular stimulus" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP
GO:0031234 "extrinsic to internal side of plasma membrane" evidence=IDA
GO:0005777 "peroxisome" evidence=IDA
GO:0051289 "protein homotetramerization" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0019428 "allantoin biosynthetic process" evidence=IDA
GO:0033971 "hydroxyisourate hydrolase activity" evidence=IDA
GO:0051997 "2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity" evidence=IDA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
MGI|MGI:1916142 1190003J15Rik "RIKEN cDNA 1190003J15 gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309350 RGD1309350 "similar to transthyretin (4L369)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060825-253 urah "HIU hydrolase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1S6P3 LOC100522550 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q47UL3 CPS_4870 "5-hydroxyisourate hydrolase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4870 CPS_4870 "conserved hypothetical protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|G4N1C8 MGG_09534 "5-hydroxyisourate hydrolase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
WB|WBGene00022808 ZK697.8 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00011181 R09H10.3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LVM5TTHL_ARATH3, ., 5, ., 2, ., 1, 70.56920.96640.9783yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.10.963
4th Layer4.1.1.n10.946
3rd Layer3.5.2.170.946
3rd Layer3.5.20.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00025187001
RecName- Full=Transthyretin; (334 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00013082001
SubName- Full=Chromosome chr10 scaffold_433, whole genome shotgun sequence; (505 aa)
•    •  0.949
GSVIVG00013799001
RecName- Full=Uricase; EC=1.7.3.3;; Catalyzes the oxidation of uric acid to 5- hydroxyisourate, [...] (48 aa)
     •  0.899
GSVIVG00013798001
RecName- Full=Uricase; EC=1.7.3.3;; Catalyzes the oxidation of uric acid to 5- hydroxyisourate, [...] (295 aa)
• •  •• 0.746
GSVIVG00010725001
SubName- Full=Chromosome undetermined scaffold_279, whole genome shotgun sequence; (283 aa)
• •     0.494
GSVIVG00033522001
RecName- Full=DNA topoisomerase; EC=5.99.1.2; (847 aa)
      • 0.480
GSVIVG00032381001
RecName- Full=DNA topoisomerase; EC=5.99.1.2; (933 aa)
      • 0.480
GSVIVG00006020001
RecName- Full=DNA topoisomerase; EC=5.99.1.2; (914 aa)
      • 0.480
GSVIVG00030118001
SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (482 aa)
• •     0.475
GSVIVG00024622001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (1281 aa)
• •     0.458
GSVIVG00021881001
SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (521 aa)
  •     0.414

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
cd05822112 cd05822, TLP_HIUase, HIUase (5-hydroxyisourate hyd 6e-46
TIGR02962112 TIGR02962, hdxy_isourate, hydroxyisourate hydrolas 4e-42
pfam09349159 pfam09349, OHCU_decarbox, OHCU decarboxylase 1e-38
PRK13798166 PRK13798, PRK13798, putative OHCU decarboxylase; P 6e-38
pfam00576111 pfam00576, Transthyretin, HIUase/Transthyretin fam 5e-36
TIGR03180158 TIGR03180, UraD_2, OHCU decarboxylase 9e-33
PRK13797516 PRK13797, PRK13797, putative bifunctional allantoi 8e-30
COG2351124 COG2351, COG2351, Transthyretin-like protein [Gene 5e-28
cd05469113 cd05469, Transthyretin_like, Transthyretin_like 2e-24
PRK15036137 PRK15036, PRK15036, hydroxyisourate hydrolase; Pro 1e-19
cd05821121 cd05821, TLP_Transthyretin, Transthyretin (TTR) is 2e-11
TIGR03164157 TIGR03164, UHCUDC, OHCU decarboxylase 7e-11
COG3195176 COG3195, COG3195, Uncharacterized protein conserve 5e-10
smart00095121 smart00095, TR_THY, Transthyretin 6e-08
PRK13799 591 PRK13799, PRK13799, unknown domain/N-carbamoyl-L-a 8e-07
PRK13590 591 PRK13590, PRK13590, putative bifunctional OHCU dec 6e-06
>gnl|CDD|100114 cd05822, TLP_HIUase, HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) Back     alignment and domain information 
 Score =  151 bits (383), Expect = 6e-46
 Identities = 54/125 (43%), Positives = 67/125 (53%), Gaps = 18/125 (14%)

Query: 208 PITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLM 267
           P++THVLD + G PAAGV V L    G     L             +  TN DGRC  L+
Sbjct: 2   PLSTHVLDTATGKPAAGVAVTLYRLDGNGWTLL------------ATGVTNADGRCDDLL 49

Query: 268 GMIEDLNPGFYKITFNTGKY----CPEGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFT 323
                L  G YK+TF+TG Y      E F+P V + F I +    EH+HVPLLLSPF ++
Sbjct: 50  PPGAQLAAGTYKLTFDTGAYFAARGQESFYPEVEVRFTITDPT--EHYHVPLLLSPFGYS 107

Query: 324 TYRGS 328
           TYRGS
Sbjct: 108 TYRGS 112

HIUase has high sequence similarity with transthyretins and is a member of the transthyretin-like protein (TLP) family. HIUase is distinguished from transthyretins by a conserved signature motif at its C-terminus that forms part of the active site. In HIUase, this motif is YRGS, while transthyretins have a conserved TAVV sequence in the same location. Most HIUases are cytosolic but in plants and slime molds, they are peroxisomal based on the presence of N-terminal periplasmic localization sequences. HIUase forms a homotetramer with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. Length = 112
>gnl|CDD|200221 TIGR02962, hdxy_isourate, hydroxyisourate hydrolase Back     alignment and domain information
>gnl|CDD|204206 pfam09349, OHCU_decarbox, OHCU decarboxylase Back     alignment and domain information
>gnl|CDD|184333 PRK13798, PRK13798, putative OHCU decarboxylase; Provisional Back     alignment and domain information
>gnl|CDD|201317 pfam00576, Transthyretin, HIUase/Transthyretin family Back     alignment and domain information
>gnl|CDD|188295 TIGR03180, UraD_2, OHCU decarboxylase Back     alignment and domain information
>gnl|CDD|106738 PRK13797, PRK13797, putative bifunctional allantoicase/OHCU decarboxylase; Provisional Back     alignment and domain information
>gnl|CDD|225226 COG2351, COG2351, Transthyretin-like protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|100112 cd05469, Transthyretin_like, Transthyretin_like Back     alignment and domain information
>gnl|CDD|184996 PRK15036, PRK15036, hydroxyisourate hydrolase; Provisional Back     alignment and domain information
>gnl|CDD|100113 cd05821, TLP_Transthyretin, Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates Back     alignment and domain information
>gnl|CDD|132208 TIGR03164, UHCUDC, OHCU decarboxylase Back     alignment and domain information
>gnl|CDD|225736 COG3195, COG3195, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|128406 smart00095, TR_THY, Transthyretin Back     alignment and domain information
>gnl|CDD|106740 PRK13799, PRK13799, unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional Back     alignment and domain information
>gnl|CDD|184168 PRK13590, PRK13590, putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 328
cd05469113 Transthyretin_like Transthyretin_like. This domain 100.0
TIGR02962112 hdxy_isourate hydroxyisourate hydrolase. Members o 100.0
cd05822112 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) ca 100.0
PF00576112 Transthyretin: HIUase/Transthyretin family; InterP 100.0
TIGR03164157 UHCUDC OHCU decarboxylase. Previously thought to o 100.0
COG2351124 Transthyretin-like protein [General function predi 100.0
TIGR03180158 UraD_2 OHCU decarboxylase. Previously thought to o 100.0
PRK13798166 putative OHCU decarboxylase; Provisional 100.0
COG3195176 Uncharacterized protein conserved in bacteria [Fun 100.0
cd05821121 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa 100.0
smart00095121 TR_THY Transthyretin. 100.0
PF09349159 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR01 100.0
PRK15036137 hydroxyisourate hydrolase; Provisional 100.0
KOG3006132 consensus Transthyretin and related proteins [Lipi 100.0
PRK13799 591 unknown domain/N-carbamoyl-L-amino acid hydrolase 100.0
PRK13590 591 putative bifunctional OHCU decarboxylase/allantoat 100.0
PRK13797516 putative bifunctional allantoicase/OHCU decarboxyl 100.0
PF1362082 CarboxypepD_reg: Carboxypeptidase regulatory-like 96.75
PF1197497 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: I 96.57
PF10794131 DUF2606: Protein of unknown function (DUF2606); In 93.16
PF1371588 DUF4480: Domain of unknown function (DUF4480) 91.81
cd03463185 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4 90.25
PF0106080 DUF290: Transthyretin-like family; InterPro: IPR00 89.92
PRK0309480 hypothetical protein; Provisional 88.59
cd03457188 intradiol_dioxygenase_like Intradiol dioxygenase s 88.1
PF10670215 DUF4198: Domain of unknown function (DUF4198) 87.63
cd03868372 M14_CPD_I The first carboxypeptidase (CP)-like dom 87.5
COG3485226 PcaH Protocatechuate 3,4-dioxygenase beta subunit 86.02
cd03464220 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4- 85.7
cd00421146 intradiol_dioxygenase Intradiol dioxygenases catal 85.23
TIGR02422220 protocat_beta protocatechuate 3,4-dioxygenase, bet 84.92
cd03459158 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) 84.65
cd03866376 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM 84.19
PF00775183 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th 83.85
cd03858374 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub 83.27
PF08400134 phage_tail_N: Prophage tail fibre N-terminal; Inte 82.68
cd03863375 M14_CPD_II The second carboxypeptidase (CP)-like d 82.52
TIGR02439285 catechol_proteo catechol 1,2-dioxygenase, proteoba 81.79
cd03458256 Catechol_intradiol_dioxygenases Catechol intradiol 81.62
TIGR02423193 protocat_alph protocatechuate 3,4-dioxygenase, alp 81.51
TIGR02438281 catachol_actin catechol 1,2-dioxygenase, Actinobac 80.57
>cd05469 Transthyretin_like Transthyretin_like Back     alignment and domain information 
Probab=100.00  E-value=2.4e-47  Score=317.83  Aligned_cols=109  Identities=33%  Similarity=0.602  Sum_probs=100.3

Q ss_pred             CCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEeCCCCCcCCCCCCccCCCCeeEEEEEeeCC
Q 020289          207 LPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGK  286 (328)
Q Consensus       207 ~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~Td~DGR~~~~~~~~~~~~~G~Y~l~F~tg~  286 (328)
                      +|||||||||++|+||+||+|+|++++.           +++|+.|++++||+||||++|+. ++.+.+|+|||+|+||+
T Consensus         1 ~~lStHVLDt~~G~PAagv~V~L~~~~~-----------~~~w~~l~~~~Tn~DGR~~~~l~-~~~~~~G~Y~l~F~t~~   68 (113)
T cd05469           1 CPLMVKVLDAVRGSPAANVAIKVFRKTA-----------DGSWEIFATGKTNEDGELHGLIT-EEEFXAGVYRVEFDTKS   68 (113)
T ss_pred             CCceEEEEeCCCCccCCCCEEEEEEecC-----------CCceEEEEEEEECCCCCccCccc-cccccceEEEEEEehHH
Confidence            5899999999999999999999998752           24799999999999999998876 56789999999999999


Q ss_pred             CCC----CCCCceeEEEEEeecCCCCCceeeceeecCCccccccCC
Q 020289          287 YCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS  328 (328)
Q Consensus       287 Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS  328 (328)
                      ||+    ++|||+|+|+|.|++++ ++|||||||||||||||||||
T Consensus        69 Yf~~~~~~~F~p~V~i~F~v~d~~-~~HYHvPLLlSP~gYSTYRGS  113 (113)
T cd05469          69 YWKALGITPFHEYAEVVFTANDSG-HRHYTIALLLSPFSYSTTAVV  113 (113)
T ss_pred             hHhhCCCCCCcceEEEEEEECCCC-CCCEEeCEEecCCeeeeecCC
Confidence            997    78999999999999842 799999999999999999998

This domain is present in the transthyretin-like protein (TLP) family which includes transthyretin (TTR) and a transthyretin-related protein called 5-hydroxyisourate hydrolase (HIUase). TTR and HIUase are homotetrameric proteins with each subunit consisting of eight beta-strands arranged in two sheets and a short alpha-helix. The central channel of the tetramer contains two independent binding sites, each located between a pair of subunits. TTR transports thyroid hormones and retinol in the blood serum of vertebrates while HIUase catalyzes the second step in a three-step ureide pathway. TTRs are highly conserved and found only in vertebrates while the HIUases are found in a wide range of bacterial, plant, fungal, slime mold and vertebrate organisms.
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase Back     alignment and domain information
>cd05822 TLP_HIUase HIUase (5-hydroxyisourate hydrolase) catalyzes the second step in a three-step ureide pathway in which 5-hydroxyisourate (HIU), a product of the uricase (urate oxidase) reaction, is hydrolyzed to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) Back     alignment and domain information
>PF00576 Transthyretin: HIUase/Transthyretin family; InterPro: IPR023416 This family includes transthyretin that is a thyroid hormone-binding protein that transports thyroxine from the bloodstream to the brain Back     alignment and domain information
>TIGR03164 UHCUDC OHCU decarboxylase Back     alignment and domain information
>COG2351 Transthyretin-like protein [General function prediction only] Back     alignment and domain information
>TIGR03180 UraD_2 OHCU decarboxylase Back     alignment and domain information
>PRK13798 putative OHCU decarboxylase; Provisional Back     alignment and domain information
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd05821 TLP_Transthyretin Transthyretin (TTR) is a 55 kDa protein responsible for the transport of thyroid hormones and retinol in vertebrates Back     alignment and domain information
>smart00095 TR_THY Transthyretin Back     alignment and domain information
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin Back     alignment and domain information
>PRK15036 hydroxyisourate hydrolase; Provisional Back     alignment and domain information
>KOG3006 consensus Transthyretin and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional Back     alignment and domain information
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional Back     alignment and domain information
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional Back     alignment and domain information
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A Back     alignment and domain information
>PF11974 MG1: Alpha-2-macroglobulin MG1 domain; InterPro: IPR021868 This is the N-terminal MG1 domain from alpha-2-macroglobulin [] Back     alignment and domain information
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function Back     alignment and domain information
>PF13715 DUF4480: Domain of unknown function (DUF4480) Back     alignment and domain information
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit Back     alignment and domain information
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 [] Back     alignment and domain information
>PRK03094 hypothetical protein; Provisional Back     alignment and domain information
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup Back     alignment and domain information
>PF10670 DUF4198: Domain of unknown function (DUF4198) Back     alignment and domain information
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit Back     alignment and domain information
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates Back     alignment and domain information
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit Back     alignment and domain information
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate Back     alignment and domain information
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases Back     alignment and domain information
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein Back     alignment and domain information
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial Back     alignment and domain information
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols Back     alignment and domain information
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit Back     alignment and domain information
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
2q37_A181 Crystal Structure Of Ohcu Decarboxylase In The Pres 7e-40
3iwv_A138 Crystal Structure Of Y116t Mutant Of 5-Hydroxyisour 4e-18
2h1x_A119 Crystal Structure Of 5-Hydroxyisourate Hydrolase (F 4e-18
3iwu_A138 Crystal Structure Of Y116tI16A DOUBLE MUTANT OF 5-H 9e-18
3q1e_A119 Crystal Structure Of Y116tI16A DOUBLE MUTANT OF 5-H 1e-16
2gpz_A111 Transthyretin-Like Protein From Salmonella Dublin L 4e-15
2g2n_A114 Crystal Structure Of E.Coli Transthyretin-Related P 1e-13
2igl_A118 Crystal Structure Of E. Coli Yedx, A Transthyretin 1e-13
2h0e_A121 Crystal Structure Of Pucm In The Absence Of Substra 5e-11
3o7h_A189 Crystal Structure Of 2-Oxo-4-Hydroxy-4-Carboxy-5-Ur 2e-10
3qva_A116 Structure Of Klebsiella Pneumoniae 5-Hydroxyisourat 1e-07
1sn0_A130 Crystal Structure Of Sea Bream Transthyretin In Com 2e-06
2o70_A174 Structure Of Ohcu Decarboxylase From Zebrafish Leng 2e-06
1tfp_A130 Transthyretin (Formerly Known As Prealbumin) Length 5e-06
1gke_A120 Rat Transthyretin Length = 120 6e-06
1ie4_A127 Rat Transthyretin Complex With Thyroxine (T4) Lengt 9e-06
1oo2_A119 Crystal Structure Of Transthyretin From Sparus Aura 1e-05
2qpf_A128 Crystal Structure Of Mouse Transthyretin Length = 1 3e-05
1x7t_A127 Structure Of Ttr R104h: A Non-Amyloidogenic Variant 4e-04
3bt0_A127 Crystal Structure Of Transthyretin Variant V20s Len 7e-04
>pdb|2Q37|A Chain A, Crystal Structure Of Ohcu Decarboxylase In The Presence Of (S)-Allantoin Length = 181 Back     alignment and structure 
Iteration: 1

 Score =  160 bits (406), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 81/140 (57%), Positives = 103/140 (73%), Gaps = 8/140 (5%)
Query: 16  CCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSPS----- 70
           CCGS++FAK+ +++ P  S  +A+  AR IWFN V+V  WL+AFSAHPQIG +PS     
Sbjct: 33  CCGSSEFAKQXSTSGPLTS-QEAIYTARDIWFNQVNVTDWLEAFSAHPQIGNTPSPSINS 91
Query: 71  --SQWSKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRY 128
             ++ S +EQSTA AT + S+ QEL++WN  Y+ +FGFIFIICASGRT AE L  LK+RY
Sbjct: 92  DFARRSVSEQSTAFATTSASALQELAEWNVLYKKKFGFIFIICASGRTHAEXLHALKERY 151
Query: 129 TNRPIIEFEIAAQEQMKITE 148
            NRPI+E EIAA EQ KITE
Sbjct: 152 ENRPIVELEIAAXEQXKITE 171
>pdb|3IWV|A Chain A, Crystal Structure Of Y116t Mutant Of 5-Hydroxyisourate Hydrolase (Trp) Length = 138 Back     alignment and structure
>pdb|2H1X|A Chain A, Crystal Structure Of 5-Hydroxyisourate Hydrolase (Formerly Known As Trp, Transthyretin Related Protein) Length = 119 Back     alignment and structure
>pdb|3IWU|A Chain A, Crystal Structure Of Y116tI16A DOUBLE MUTANT OF 5-Hydroxyisourate Hydrolase Length = 138 Back     alignment and structure
>pdb|3Q1E|A Chain A, Crystal Structure Of Y116tI16A DOUBLE MUTANT OF 5-Hydroxyisourate Hydrolase In Complex With T4 Length = 119 Back     alignment and structure
>pdb|2GPZ|A Chain A, Transthyretin-Like Protein From Salmonella Dublin Length = 111 Back     alignment and structure
>pdb|2G2N|A Chain A, Crystal Structure Of E.Coli Transthyretin-Related Protein With Bound Zn Length = 114 Back     alignment and structure
>pdb|2IGL|A Chain A, Crystal Structure Of E. Coli Yedx, A Transthyretin Related Protein Length = 118 Back     alignment and structure
>pdb|2H0E|A Chain A, Crystal Structure Of Pucm In The Absence Of Substrate Length = 121 Back     alignment and structure
>pdb|3O7H|A Chain A, Crystal Structure Of 2-Oxo-4-Hydroxy-4-Carboxy-5-Ureidoimidazoline Decarboxylase From Klebsiella Pneumoniae Length = 189 Back     alignment and structure
>pdb|3QVA|A Chain A, Structure Of Klebsiella Pneumoniae 5-Hydroxyisourate Hydrolase Length = 116 Back     alignment and structure
>pdb|1SN0|A Chain A, Crystal Structure Of Sea Bream Transthyretin In Complex With Thyroxine At 1.9a Resolution Length = 130 Back     alignment and structure
>pdb|2O70|A Chain A, Structure Of Ohcu Decarboxylase From Zebrafish Length = 174 Back     alignment and structure
>pdb|1TFP|A Chain A, Transthyretin (Formerly Known As Prealbumin) Length = 130 Back     alignment and structure
>pdb|1GKE|A Chain A, Rat Transthyretin Length = 120 Back     alignment and structure
>pdb|1IE4|A Chain A, Rat Transthyretin Complex With Thyroxine (T4) Length = 127 Back     alignment and structure
>pdb|1OO2|A Chain A, Crystal Structure Of Transthyretin From Sparus Aurata Length = 119 Back     alignment and structure
>pdb|2QPF|A Chain A, Crystal Structure Of Mouse Transthyretin Length = 128 Back     alignment and structure
>pdb|1X7T|A Chain A, Structure Of Ttr R104h: A Non-Amyloidogenic Variant With Protective Clinical Effects Length = 127 Back     alignment and structure
>pdb|3BT0|A Chain A, Crystal Structure Of Transthyretin Variant V20s Length = 127 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query328
3iwv_A138 5-hydroxyisourate hydrolase; transthyretin, molecu 2e-41
2q37_A181 OHCU decarboxylase; 2-OXO-4-hydroxy-4-carboxy-5-ur 3e-40
2g2n_A114 Transthyretin-like protein; transthyretin-related 7e-40
3qva_A116 Transthyretin-like protein; transthyretin-related 7e-38
3o7i_A189 OHCU decarboxylase; lyase; 1.50A {Klebsiella pneum 6e-37
2h0e_A121 Transthyretin-like protein PUCM; beta sandwitch, h 9e-36
1f86_A115 Transthyretin Thr119Met variant; protein stability 7e-34
1oo2_A119 Transthyretin; retinol-binding protein, tetramer, 1e-33
2o70_A174 OHCU decarboxylase; URIC acid, decarboxylation, 5- 2e-32
2h4e_A127 Transthyretin; amyloid, sulfite, familial amyloido 1e-31
2o8i_A165 AGR_C_4230P, hypothetical protein ATU2327; agrobac 6e-27
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A Length = 138 Back     alignment and structure
 Score =  140 bits (353), Expect = 2e-41
 Identities = 57/155 (36%), Positives = 79/155 (50%), Gaps = 22/155 (14%)

Query: 178 DRVSIIEGHLCASTEASAGKISQIPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQP 237
           +R+  I GH+      SA K   +      P++THVL+++QG P A + + L     +  
Sbjct: 2   NRLQHIRGHI-----VSADKHINMSATLLSPLSTHVLNIAQGVPGANMTIVLHRLDPVS- 55

Query: 238 RPLFGETDVSGWVYQGSSTTNKDGRCGQLMGMIEDLNPGFYKITFNTGKYC----PEGFF 293
                    S W    +  TN DGRC  L+   E+   G YK+ F TGKY        F+
Sbjct: 56  ---------SAWNILTTGITNDDGRCPGLI-TKENFIAGVYKMRFETGKYWDALGETCFY 105

Query: 294 PYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS 328
           PYV IVF I  +   +H+HVPLLLS FS++T RGS
Sbjct: 106 PYVEIVFTITNTS--QHYHVPLLLSRFSYSTTRGS 138
>2q37_A OHCU decarboxylase; 2-OXO-4-hydroxy-4-carboxy-5-ureidoimidazoline, plant protein, lyase; HET: 3AL; 2.50A {Arabidopsis thaliana} SCOP: a.288.1.1 Length = 181 Back     alignment and structure
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A Length = 114 Back     alignment and structure
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp} Length = 116 Back     alignment and structure
>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB: 3o7h_A 3o7j_A* 3o7k_A Length = 189 Back     alignment and structure
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A* Length = 121 Back     alignment and structure
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY amyloidogenesis, transport protein; HET: T44; 1.10A {Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A 1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A* 3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A* 1tt6_A* 1tta_A 1tyr_A* ... Length = 115 Back     alignment and structure
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A* Length = 119 Back     alignment and structure
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1 PDB: 2o73_A* 2o74_A* Length = 174 Back     alignment and structure
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A Length = 127 Back     alignment and structure
>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium tumefaciens STR. C58, structural GENO PSI-2, protein structure initiative; 2.60A {Agrobacterium tumefaciens str} SCOP: a.288.1.1 Length = 165 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query328
3iwv_A138 5-hydroxyisourate hydrolase; transthyretin, molecu 100.0
2q37_A181 OHCU decarboxylase; 2-OXO-4-hydroxy-4-carboxy-5-ur 100.0
2g2n_A114 Transthyretin-like protein; transthyretin-related 100.0
2o70_A174 OHCU decarboxylase; URIC acid, decarboxylation, 5- 100.0
2h0e_A121 Transthyretin-like protein PUCM; beta sandwitch, h 100.0
2o8i_A165 AGR_C_4230P, hypothetical protein ATU2327; agrobac 100.0
3qva_A116 Transthyretin-like protein; transthyretin-related 100.0
2h4e_A127 Transthyretin; amyloid, sulfite, familial amyloido 100.0
3o7i_A189 OHCU decarboxylase; lyase; 1.50A {Klebsiella pneum 100.0
1oo2_A119 Transthyretin; retinol-binding protein, tetramer, 100.0
1f86_A115 Transthyretin Thr119Met variant; protein stability 100.0
4ank_A147 Transthyretin; hormone binding protein, thyroxine 100.0
3e8v_A82 Possible transglutaminase-family protein; structur 94.2
2bum_B241 Protocatechuate 3,4-dioxygenase beta chain; oxidor 86.19
3o5u_A257 Chlorocatechol 1,2-dioxygenase; beta barrel,oxidor 86.06
3t63_A200 3,4-PCD, protocatechuate 3,4-dioxygenase alpha cha 84.46
3t63_M238 3,4-PCD, protocatechuate 3,4-dioxygenase beta chai 84.15
1h8l_A380 Carboxypeptidase GP180 residues 503-882; hydrolase 83.95
2bum_A209 Protocatechuate 3,4-dioxygenase alpha chain; oxido 83.68
1tmx_A293 Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidor 83.34
3irp_X429 URO-adherence factor A; DEV-IGG fold, cell WALL, h 82.87
2boy_A254 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxi 81.3
3n9t_A290 PNPC; phospholipid binds, N-terminal helix tunnel, 81.12
2nsm_A439 Carboxypeptidase N catalytic chain; caroxypeptidas 80.92
3th1_A260 Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxy 80.02
>3iwv_A 5-hydroxyisourate hydrolase; transthyretin, molecular evolution, URIC acid degradation, T hormones, peroxisome, purine metabolism; 1.68A {Danio rerio} PDB: 3iwu_A 3q1e_A 2h6u_A 2h1x_A Back     alignment and structure
Probab=100.00  E-value=1.6e-49  Score=339.56  Aligned_cols=133  Identities=41%  Similarity=0.764  Sum_probs=101.5

Q ss_pred             hhhHHhhhccccccccccCcccCCCCCCCCCceeeeccCCCCCCCCCCEEEEEEecCCCCCCCCCccCCCCceEEEEEEe
Q 020289          178 DRVSIIEGHLCASTEASAGKISQIPTRTRLPITTHVLDVSQGSPAAGVEVRLEMWKGIQPRPLFGETDVSGWVYQGSSTT  257 (328)
Q Consensus       178 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iTtHVLDt~~G~PAagv~V~L~~~~~~~~~~~~~~~~~~~~~~l~~~~T  257 (328)
                      +|+..+.+|...++.     ...|..++++|||||||||++|+||+||+|+|+++.+.          ++.|+.|++++|
T Consensus         2 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~LTtHVLDt~~G~PAagv~V~L~~~~~~----------~~~w~~l~~~~T   66 (138)
T 3iwv_A            2 NRLQHIRGHIVSADK-----HINMSATLLSPLSTHVLNIAQGVPGANMTIVLHRLDPV----------SSAWNILTTGIT   66 (138)
T ss_dssp             -----------------------------CCEECCEEETTTTEECTTCEEEEEEECSS----------SCCEEEEEEEEC
T ss_pred             Ccceeeeceeeeccc-----ccccccCCCCCceEEEeecCCccCCCCCEEEEEEECCC----------CCCcEEEEEEec
Confidence            467777777665443     35566678899999999999999999999999998642          368999999999


Q ss_pred             CCCCCcCCCCCCccCCCCeeEEEEEeeCCCCC----CCCCceeEEEEEeecCCCCCceeeceeecCCccccccCC
Q 020289          258 NKDGRCGQLMGMIEDLNPGFYKITFNTGKYCP----EGFFPYVSIVFEIRESQKREHFHVPLLLSPFSFTTYRGS  328 (328)
Q Consensus       258 d~DGR~~~~~~~~~~~~~G~Y~l~F~tg~Yf~----~~F~p~V~v~F~i~~~~~~~HYHvPLLlSP~sYSTYRGS  328 (328)
                      |+||||+.|++ ++.+.+|+|||+|+||+||+    ++|||+|+|+|.|+++  .+|||||||||||||||||||
T Consensus        67 n~DGR~~~ll~-~~~~~~G~Y~L~F~tg~Yf~~~g~~~F~p~V~V~F~i~d~--~~HYHVPLLlSP~gYSTYRGS  138 (138)
T 3iwv_A           67 NDDGRCPGLIT-KENFIAGVYKMRFETGKYWDALGETCFYPYVEIVFTITNT--SQHYHVPLLLSRFSYSTTRGS  138 (138)
T ss_dssp             CTTSCCTTSSC-TTTCCSEEEEEEECHHHHHHHTTCCCSCSCEEEEEEECCT--TSCEECCEEEETTEEEEECBC
T ss_pred             CCCCCcCCccC-cccCCCceEEEEEehHHHHHhcCCCccceeeEEEEEECCC--CCCeEEeEEecCCcceeecCC
Confidence            99999999775 56899999999999999996    7899999999999985  799999999999999999998
>2q37_A OHCU decarboxylase; 2-OXO-4-hydroxy-4-carboxy-5-ureidoimidazoline, plant protein, lyase; HET: 3AL; 2.50A {Arabidopsis thaliana} SCOP: a.288.1.1 Back     alignment and structure
>2g2n_A Transthyretin-like protein; transthyretin-related protein, unknown functi; 1.65A {Escherichia coli} PDB: 2g2p_A 2igl_A 2gpz_A Back     alignment and structure
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1 PDB: 2o73_A* 2o74_A* Back     alignment and structure
>2h0e_A Transthyretin-like protein PUCM; beta sandwitch, hydrolase, HIU; 2.20A {Bacillus subtilis} PDB: 2h0f_A* 2h0j_A* Back     alignment and structure
>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium tumefaciens STR. C58, structural GENO PSI-2, protein structure initiative; 2.60A {Agrobacterium tumefaciens str} SCOP: a.288.1.1 Back     alignment and structure
>3qva_A Transthyretin-like protein; transthyretin-related protein, 5-hydroxyisourate hydrolase,; HET: PO4; 1.75A {Klebsiella pneumoniae subsp} Back     alignment and structure
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A Back     alignment and structure
>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB: 3o7h_A 3o7j_A* 3o7k_A Back     alignment and structure
>1oo2_A Transthyretin; retinol-binding protein, tetramer, transport protein; 1.56A {Sparus aurata} SCOP: b.3.4.1 PDB: 1sn2_A 1sn0_A 1sn5_A* Back     alignment and structure
>1f86_A Transthyretin Thr119Met variant; protein stability, X-RAY amyloidogenesis, transport protein; HET: T44; 1.10A {Homo sapiens} SCOP: b.3.4.1 PDB: 1fhn_A 1bze_A 1fh2_A 1bzd_A 3fcb_A* 3fc8_A* 3cfm_A 3cfn_A* 3cfq_A* 3cft_A* 3m1o_A* 1bmz_A 1bm7_A 1e3f_A* 1e5a_A* 1e4h_A 1ict_A* 1tt6_A* 1tta_A 1tyr_A* ... Back     alignment and structure
>4ank_A Transthyretin; hormone binding protein, thyroxine transport protein, hormon amyloidosis inhibition; 1.70A {Homo sapiens} Back     alignment and structure
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B* Back     alignment and structure
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A* Back     alignment and structure
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ... Back     alignment and structure
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ... Back     alignment and structure
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A* Back     alignment and structure
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A* Back     alignment and structure
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex} Back     alignment and structure
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin, peptidoglycan-anchor secreted, virulence, cell adhesion; 1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A 3is0_X 3is1_X Back     alignment and structure
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus} Back     alignment and structure
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida} Back     alignment and structure
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 328
d2q37a1155 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thal 2e-45
d1oo2a_116 b.3.4.1 (A:) Transthyretin (synonym: prealbumin) { 7e-35
d1f86a_115 b.3.4.1 (A:) Transthyretin (synonym: prealbumin) { 4e-32
d2o70a1165 a.288.1.1 (A:2-166) OHCU decarboxylase, UraD {Zebr 2e-30
d2o8ia1165 a.288.1.1 (A:1-165) Hypothetical protein Atu2327 { 9e-28
>d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 155 Back     information, alignment and structure

class: All alpha proteins
fold: UraD-like
superfamily: UraD-Like
family: UraD-like
domain: OHCU decarboxylase, UraD
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  150 bits (379), Expect = 2e-45
 Identities = 85/154 (55%), Positives = 111/154 (72%), Gaps = 8/154 (5%)

Query: 10  EEELLGCCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP 69
           E+E   CCGS++FAK+M+++ P  S     +A    +  + +V  WL+AFSAHPQIG +P
Sbjct: 2   EDEWKVCCGSSEFAKQMSTSGPLTSQEAIYTARDIWFNQV-NVTDWLEAFSAHPQIGNTP 60

Query: 70  S-------SQWSKAEQSTALATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILA 122
           S       ++ S +EQSTA AT + S+ QEL++WN  Y+ +FGFIFIICASGRT AE+L 
Sbjct: 61  SPSINSDFARRSVSEQSTAFATTSASALQELAEWNVLYKKKFGFIFIICASGRTHAEMLH 120

Query: 123 ELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFS 156
            LK+RY NRPI+E EIAA EQMKITELR+AKLFS
Sbjct: 121 ALKERYENRPIVELEIAAMEQMKITELRMAKLFS 154
>d1oo2a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Gilthead seabream (Sparus aurata) [TaxId: 8175]} Length = 116 Back     information, alignment and structure
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human (Homo sapiens) [TaxId: 9606]} Length = 115 Back     information, alignment and structure
>d2o70a1 a.288.1.1 (A:2-166) OHCU decarboxylase, UraD {Zebrafish (Brachydanio rerio) [TaxId: 7955]} Length = 165 Back     information, alignment and structure
>d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327 {Agrobacterium tumefaciens [TaxId: 358]} Length = 165 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query328
d2q37a1155 OHCU decarboxylase, UraD {Thale cress (Arabidopsis 100.0
d2o70a1165 OHCU decarboxylase, UraD {Zebrafish (Brachydanio r 100.0
d2o8ia1165 Hypothetical protein Atu2327 {Agrobacterium tumefa 100.0
d1oo2a_116 Transthyretin (synonym: prealbumin) {Gilthead seab 100.0
d1f86a_115 Transthyretin (synonym: prealbumin) {Human (Homo s 100.0
d1h8la179 Carboxypeptidase D C-terminal domain {Crested duck 96.35
d1vlfn179 Transhydroxylase beta subunit, BthL, C-terminal do 94.68
d1uwya1107 Carboxypeptidase M C-terminal domain {Human (Homo 91.64
d1cwva194 Invasin {Yersinia pseudotuberculosis [TaxId: 633]} 91.41
d1nkga187 Rhamnogalacturonase B, RhgB, middle domain {Asperg 89.07
d1s9aa_256 Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus 86.98
d2burb1238 Protocatechuate-3,4-dioxygenase, beta chain {Acine 86.15
d1f00i195 Intimin {Escherichia coli [TaxId: 562]} 85.93
d3pccm_236 Protocatechuate-3,4-dioxygenase, beta chain {Pseud 83.73
>d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: UraD-like
superfamily: UraD-Like
family: UraD-like
domain: OHCU decarboxylase, UraD
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.3e-48  Score=339.23  Aligned_cols=147  Identities=59%  Similarity=0.937  Sum_probs=134.1

Q ss_pred             HHHHHHhhCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhccCChhhHHHHHhhCCCCCCCC-------CCcccHHHhhHhh
Q 020289           10 EEELLGCCGSTKFAKEMASASPFASLNQAVSAARHIWFNLVDVNGWLDAFSAHPQIGQSP-------SSQWSKAEQSTAL   82 (328)
Q Consensus        10 ~~~f~~~~gsp~~A~~~~~~RPF~s~~~L~~a~~~~~~~~~~~~~~l~~l~aHP~LG~~~-------~s~~S~~EQs~al   82 (328)
                      +++|..||+|||||++++++|||.|+++|+.++..+| ..++.++|+++|++||+||++.       ++.+|..||++++
T Consensus         2 ~~~~~~Cc~s~~wa~~~~~~RPF~s~~~L~~a~~~~~-~~~~~~~~l~~l~aHP~Lg~~~~~~~~~~lt~~S~~EQs~al   80 (155)
T d2q37a1           2 EDEWKVCCGSSEFAKQMSTSGPLTSQEAIYTARDIWF-NQVNVTDWLEAFSAHPQIGNTPSPSINSDFARRSVSEQSTAF   80 (155)
T ss_dssp             CSGGGTSSSCHHHHHHHHTSCCCCHHHHHHHHHHHHH-HTSCHHHHHHHHHTSCCTTSCCC-------------TTHHHH
T ss_pred             chhHhhcCCcHHHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCHHHHHHHHhcCccccccccccccchhhHHhHHHHHhhh
Confidence            4679999999999999999999999999999999986 6689999999999999999975       5788999998888


Q ss_pred             cCCCHHHHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHhhhcc
Q 020289           83 ATANESSSQELSDWNNRYRLRFGFIFIICASGRTAAEILAELKKRYTNRPIIEFEIAAQEQMKITELRLAKLFSA  157 (328)
Q Consensus        83 ~~~s~~~~~~L~~lN~~Y~eKFGfpFVIcv~g~s~~eIL~~l~~Rl~N~~~~E~~~Al~Ev~kIa~lRL~~L~~~  157 (328)
                      ++++++++++|.+||++|++||||||||||+|+++++||+.|++||.|++++|+++|+.||.|||++||.+||++
T Consensus        81 ~~~~~~~~~~l~~lN~~Y~~kFGfpFIi~v~g~s~~eIL~~l~~Rl~n~~~~E~~~a~~Ev~kIa~lRL~~l~~d  155 (155)
T d2q37a1          81 ATTSASALQELAEWNVLYKKKFGFIFIICASGRTHAEMLHALKERYENRPIVELEIAAMEQMKITELRMAKLFSD  155 (155)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHSSCCCCCCSSCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCeeEEeeCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999964
>d2o70a1 a.288.1.1 (A:2-166) OHCU decarboxylase, UraD {Zebrafish (Brachydanio rerio) [TaxId: 7955]} Back     information, alignment and structure
>d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1oo2a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Gilthead seabream (Sparus aurata) [TaxId: 8175]} Back     information, alignment and structure
>d1f86a_ b.3.4.1 (A:) Transthyretin (synonym: prealbumin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]} Back     information, alignment and structure
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]} Back     information, alignment and structure
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]} Back     information, alignment and structure
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus [TaxId: 37919]} Back     information, alignment and structure
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1f00i1 b.1.14.1 (I:658-752) Intimin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure