Citrus Sinensis ID: 020331

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
MKTLEAPWPISLFSRIHVDKTPHSSPMLRFCHSTTRLSSFTPLSFTLRRQLPMASFSAQAVSTGDVKSDANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKILIVEMLQAANSHD
cccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEccccccccccEEEEcEEEcccccEEEEEccccHHHHHHHHcccEEEEEEcccccccccEEEEEEEEEEccHHHHHHHHHHHHHHcccccccccccEEEEEEEEcEEEEEEccEEEEcccccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHcccccccEEEEEEEccccEEEEEEcccEEEEEEccccccccHHHHHHHHHHHHHHHHccc
cccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccEEEEcccccccccccEEEEcccccccccEEEEcHHHHHHHHHHccccEEEEEEcccccccccEEEEEEEEEEccHHHHHHHHHHHHHHcccccEEEccccEEEEEEEEEEEEEcccEEEEEccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHHccc
mktleapwpislfsrihvdktphsspmlrfchsttrlssftplsftlrrqlpmasfsaqavstgdvksdANVFELIQKHQEAaarlppleEIRTVLDRSVRGMLSTFsqkyegypsgsmvdfacdadgtpilAVSSLAVHtkdllanpkcsllvardpedrtDLVITLhgdatsvaEKDKAAIRAVYLakhpnafwvdfgdfqfmriepkAVRYVSGVATALlgsgefskeeyqaanvdpiaqfskpvashmnrdhaedTRIIVQHSTSIPVASAYMLDldslgfnvkagyqgntfklripfprraedrkDVKILIVEMLQAANSHD
mktleapwpislFSRIHVDKTPHSSPMLRFCHSTTRLSSFTPLSFTLRRQLPMASFSAQAVSTGDVKSDANVFELIQKHqeaaarlppleeIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITlhgdatsvaeKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGntfklripfprraedrkdVKILIVEMLQAANSHD
MKTLEAPWPISLFSRIHVDKTPHSSPMLRFCHSTTRLSSFTPLSFTLRRQLPMASFSAQAVSTGDVKSDANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKILIVEMLQAANSHD
*******WPISLFSRIHVDK******MLRFCHSTTRLSSFTPLSFTLRRQLPMASF************DANVFELIQKHQ*AAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSK*EYQAANV**I******************TRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKILIVEML*******
********PISLFSRIHV************************************************************************EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKILIVEMLQAAN***
MKTLEAPWPISLFSRIHVDKTPHSSPMLRFCHSTTRLSSFTPLSFTLRRQLPMASFSAQAVSTGDVKSDANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKILIVEMLQAANSHD
******PWPISLFSRIHVDKTPHSSPM*R****************************************ANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKILIVEMLQAA****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKTLEAPWPISLFSRIHVDKTPHSSPMLRFCHSTTRLSSFTPLSFTLRRQLPMASFSAQAVSTGDVKSDANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKILIVEMLQAANSHD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query327
224144803279 predicted protein [Populus trichocarpa] 0.825 0.967 0.844 1e-133
224125854289 predicted protein [Populus trichocarpa] 0.880 0.996 0.787 1e-132
297739764341 unnamed protein product [Vitis vinifera] 0.987 0.947 0.728 1e-131
225441609327 PREDICTED: uncharacterized protein LOC10 0.987 0.987 0.728 1e-131
255568904281 conserved hypothetical protein [Ricinus 0.831 0.967 0.830 1e-129
359806372326 uncharacterized protein LOC100793739 [Gl 0.868 0.871 0.776 1e-126
18396698321 FMN binding protein [Arabidopsis thalian 0.813 0.828 0.808 1e-124
356560932329 PREDICTED: uncharacterized protein LOC10 0.816 0.811 0.791 1e-122
388518979328 unknown [Medicago truncatula] 0.960 0.957 0.692 1e-122
297833068323 FMN binding protein [Arabidopsis lyrata 0.785 0.795 0.813 1e-121
>gi|224144803|ref|XP_002325420.1| predicted protein [Populus trichocarpa] gi|222862295|gb|EEE99801.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 228/270 (84%), Positives = 248/270 (91%)

Query: 57  SAQAVSTGDVKSDANVFELIQKHQEAAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPS 116
           S QAVSTGDV +DA+VF+LI+ HQE AARLPP+EEIRT+L++S RGMLSTFSQK+EGYPS
Sbjct: 8   SNQAVSTGDVNTDADVFQLIRTHQENAARLPPVEEIRTLLNQSTRGMLSTFSQKHEGYPS 67

Query: 117 GSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDPEDRTDLVITLHGDATSVA 176
           GSMVDFACDADG+PILAVSSLAVHTKDLLANPKCSLLVA+DPEDRTDLVITLHGDA  V+
Sbjct: 68  GSMVDFACDADGSPILAVSSLAVHTKDLLANPKCSLLVAKDPEDRTDLVITLHGDAIPVS 127

Query: 177 EKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAA 236
           EKD  A+R  YLAKHP++FWVDFGDFQFMRIEPK VRYVSGVATALLGSGEFSKEEYQ A
Sbjct: 128 EKDITAVRTAYLAKHPDSFWVDFGDFQFMRIEPKVVRYVSGVATALLGSGEFSKEEYQTA 187

Query: 237 NVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTF 296
            VD IAQF+KPVASHMNRDHAEDTR+IVQHSTSI V SAYMLD+DSLGFNVKA YQG T+
Sbjct: 188 KVDLIAQFAKPVASHMNRDHAEDTRLIVQHSTSILVDSAYMLDMDSLGFNVKAAYQGKTY 247

Query: 297 KLRIPFPRRAEDRKDVKILIVEMLQAANSH 326
           KLRIPFPRRAEDRKDVK L+VEMLQAA S 
Sbjct: 248 KLRIPFPRRAEDRKDVKTLVVEMLQAAKSQ 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125854|ref|XP_002319691.1| predicted protein [Populus trichocarpa] gi|222858067|gb|EEE95614.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297739764|emb|CBI29946.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225441609|ref|XP_002276799.1| PREDICTED: uncharacterized protein LOC100243555 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255568904|ref|XP_002525422.1| conserved hypothetical protein [Ricinus communis] gi|223535235|gb|EEF36912.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359806372|ref|NP_001240978.1| uncharacterized protein LOC100793739 [Glycine max] gi|255638932|gb|ACU19768.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|18396698|ref|NP_566216.1| FMN binding protein [Arabidopsis thaliana] gi|21553937|gb|AAM63018.1| unknown [Arabidopsis thaliana] gi|222422814|dbj|BAH19395.1| AT3G03890 [Arabidopsis thaliana] gi|332640487|gb|AEE74008.1| FMN binding protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356560932|ref|XP_003548740.1| PREDICTED: uncharacterized protein LOC100792427 [Glycine max] Back     alignment and taxonomy information
>gi|388518979|gb|AFK47551.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|297833068|ref|XP_002884416.1| FMN binding protein [Arabidopsis lyrata subsp. lyrata] gi|297330256|gb|EFH60675.1| FMN binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query327
TAIR|locus:2079394321 AT3G03890 [Arabidopsis thalian 0.883 0.900 0.770 1.7e-114
UNIPROTKB|Q60C03238 MCA0309 "Putative uncharacteri 0.666 0.915 0.285 1.7e-18
TAIR|locus:2093005387 AT3G21140 [Arabidopsis thalian 0.651 0.550 0.307 2e-17
TAIR|locus:2017637392 AT1G51560 [Arabidopsis thalian 0.727 0.607 0.263 2.3e-15
TIGR_CMR|SPO_0465160 SPO_0465 "pyridoxamine 5'-phos 0.348 0.712 0.373 7.5e-12
TAIR|locus:2094741317 PGR7 "AT3G21200" [Arabidopsis 0.675 0.697 0.257 2.3e-08
TAIR|locus:2079394 AT3G03890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1129 (402.5 bits), Expect = 1.7e-114, P = 1.7e-114
 Identities = 228/296 (77%), Positives = 254/296 (85%)

Query:    38 SSFTPLSF-TLRRQ---LPMASF---SAQAVSTGDVKSDANVFELIQKHQEAAARLPPLE 90
             +S + +SF T+RR+   L MAS    S+QAVS G   SD +VF+LIQ H+E AARL P+E
Sbjct:    26 ASISAVSFSTVRRRFSPLTMASAAQSSSQAVSYGSGNSDTDVFKLIQAHEEKAARLSPVE 85

Query:    91 EIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKC 150
             EIRTVL+ S+ GMLSTFSQKYEGYPSGSMVDFACDADG+PILAVSSLAVHTKDLLANPKC
Sbjct:    86 EIRTVLNGSICGMLSTFSQKYEGYPSGSMVDFACDADGSPILAVSSLAVHTKDLLANPKC 145

Query:   151 SLLVARDPEDRTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNAFWVDFGDFQFMRIEPK 210
             SLL+ARDPEDRT L ITLHGDA  V+EKD+AA+R+ YLAKHP AFWVDFGDF FMRIEPK
Sbjct:   146 SLLIARDPEDRTGLRITLHGDAVLVSEKDQAAVRSAYLAKHPKAFWVDFGDFSFMRIEPK 205

Query:   211 AVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQHSTSI 270
              VRYVSGVATA LGSGEFSKEEYQAA VDPIAQ++KPV SHMN+DH EDT+ IV + TSI
Sbjct:   206 VVRYVSGVATAFLGSGEFSKEEYQAAKVDPIAQYAKPVTSHMNKDHEEDTKAIVHNITSI 265

Query:   271 PVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKILIVEMLQAANSH 326
             PV SA MLDLDSLGFNVKA  QGNTFKLR+PFPRRA+DRKDVK LIVEMLQAA S+
Sbjct:   266 PVESALMLDLDSLGFNVKATLQGNTFKLRVPFPRRAQDRKDVKTLIVEMLQAAKSN 321
GO:0004733 "pyridoxamine-phosphate oxidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0010181 "FMN binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
UNIPROTKB|Q60C03 MCA0309 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)] Back     alignment and assigned GO terms
TAIR|locus:2093005 AT3G21140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017637 AT1G51560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_0465 SPO_0465 "pyridoxamine 5'-phosphate oxidase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TAIR|locus:2094741 PGR7 "AT3G21200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query327
pfam13883167 pfam13883, Pyrid_oxidase_2, Pyridoxamine 5'-phosph 6e-20
pfam1061581 pfam10615, DUF2470, Protein of unknown function (D 3e-18
COG0748245 COG0748, HugZ, Putative heme iron utilization prot 2e-16
pfam0124388 pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosph 5e-10
TIGR04110168 TIGR04110, heme_HutZ, heme utilization protein Hut 5e-06
TIGR04109 243 TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ fami 2e-05
>gnl|CDD|222433 pfam13883, Pyrid_oxidase_2, Pyridoxamine 5'-phosphate oxidase Back     alignment and domain information 
 Score = 85.0 bits (211), Expect = 6e-20
 Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 22/153 (14%)

Query: 87  PPLEEI----RTVLDRSVRGMLSTFS--QKYEGYPSGSMVDFA----CDADGTPILAVSS 136
           P  EE     RT++ R+  G LST S  +   G P G++V  +     D+ G P   ++ 
Sbjct: 1   PTREEAAKVARTLVHRADWGALSTISTHKDVGGAPFGNVVSVSDGPPGDSTGNPYFLLTD 60

Query: 137 LAVHTKDLLANPKCSLLVA-----------RDPEDRTDLVITLHGDATSVAEKDKAAIRA 185
           L    ++L  NP+ SL ++            DPED T   ITL G    V  +++   + 
Sbjct: 61  LDSTVQNLQKNPRASLTLSEAQTGFCKKHGVDPEDPTCPRITLTGKLKKVPSEERDFAKK 120

Query: 186 VYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSG 217
            + ++HP+A  W+   +F F ++E + +  + G
Sbjct: 121 AFFSRHPDAKDWLPGHNFHFYKLEIENIYLLGG 153

Length = 167
>gnl|CDD|204534 pfam10615, DUF2470, Protein of unknown function (DUF2470) Back     alignment and domain information
>gnl|CDD|223819 COG0748, HugZ, Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216385 pfam01243, Pyridox_oxidase, Pyridoxamine 5'-phosphate oxidase Back     alignment and domain information
>gnl|CDD|200361 TIGR04110, heme_HutZ, heme utilization protein HutZ Back     alignment and domain information
>gnl|CDD|200360 TIGR04109, heme_ox_HugZ, heme oxygenase, HugZ family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 327
PF13883170 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase 99.97
COG0748245 HugZ Putative heme iron utilization protein [Inorg 99.87
PF1061583 DUF2470: Protein of unknown function (DUF2470); In 99.85
KOG3374210 consensus Cellular repressor of transcription [Tra 99.76
PRK03467144 hypothetical protein; Provisional 99.74
TIGR03668141 Rv0121_F420 PPOX class probable F420-dependent enz 99.58
TIGR03667130 Rv3369 PPOX class probable F420-dependent enzyme, 99.49
PF0124389 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase 99.49
TIGR03666132 Rv2061_F420 PPOX class probable F420-dependent enz 99.48
TIGR03618117 Rv1155_F420 PPOX class probable F420-dependent enz 99.38
PF12900143 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; I 99.25
COG3787145 Uncharacterized protein conserved in bacteria [Fun 99.11
COG3467166 Predicted flavin-nucleotide-binding protein [Gener 99.09
PRK05679195 pyridoxamine 5'-phosphate oxidase; Provisional 99.06
COG0748245 HugZ Putative heme iron utilization protein [Inorg 98.91
COG3871145 Uncharacterized stress protein (general stress pro 98.7
TIGR00558217 pdxH pyridoxamine-phosphate oxidase. This model is 98.66
COG0259214 PdxH Pyridoxamine-phosphate oxidase [Coenzyme meta 98.54
PRK06733151 hypothetical protein; Provisional 98.38
PLN03049462 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Pr 98.34
COG5015132 Uncharacterized conserved protein [Function unknow 98.26
PLN02918544 pyridoxine (pyridoxamine) 5'-phosphate oxidase 97.89
TIGR00026113 hi_GC_TIGR00026 deazaflavin-dependent nitroreducta 97.8
PF04299169 FMN_bind_2: Putative FMN-binding domain; InterPro: 97.68
PF04075132 DUF385: Domain of unknown function (DUF385) ; Inte 97.39
KOG2586228 consensus Pyridoxamine-phosphate oxidase [Coenzyme 97.11
PF12766100 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase 96.54
COG2808209 PaiB Transcriptional regulator [Transcription] 95.88
COG3576173 Predicted flavin-nucleotide-binding protein struct 93.02
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C Back     alignment and domain information 
Probab=99.97  E-value=3.2e-31  Score=232.50  Aligned_cols=146  Identities=42%  Similarity=0.679  Sum_probs=113.1

Q ss_pred             CCCcHHHHHHHHhcCCeEEEEeecC--CCCCcceEEEeeEE----EcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC
Q 020331           85 RLPPLEEIRTVLDRSVRGMLSTFSQ--KYEGYPSGSMVDFA----CDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP  158 (327)
Q Consensus        85 rps~ae~ar~lL~~~~~~~LATv~~--~~dG~P~~S~v~y~----~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~  158 (327)
                      ....|+.||+|++..++|+|+|++.  +.+|+|+++++.|+    .+.+|+|||++++++.|++||++||||||+|.+..
T Consensus         3 ~~~aA~~AR~Ll~~~~~g~LsTls~~~~~~G~Pfgs~v~~ad~~~~~~~G~p~~lls~la~ht~nl~~~~r~SL~i~~~~   82 (170)
T PF13883_consen    3 REEAAELARTLLHQSRWGTLSTLSTQKDIDGYPFGSVVSYADGPCCDSTGRPIFLLSPLAQHTRNLKADPRVSLTISEPQ   82 (170)
T ss_dssp             TT-HHHHHHHHHHH-SEEEEEEE--SGGGTTSEEEEEEE-BSSSTT---S--EEEE-TTSHHHHHHHH--EEEEEEEGGG
T ss_pred             hHHHHHHHHHHHhhCCEEEEEeccCCCCCCCceEEEEEEEecccCcCCCCCEEEEEeCccHHHHHHhhCCCEEEEEecCC
Confidence            3457889999999999999999983  34899999999999    78889999999999999999999999999999865


Q ss_pred             ---------CCC--cceEEEEEEEEEEecchhHHHHHHHHHHhCCCC-ccccC---CCeEEEEEEEeEEEEEecCccccc
Q 020331          159 ---------EDR--TDLVITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDF---GDFQFMRIEPKAVRYVSGVATALL  223 (327)
Q Consensus       159 ---------~~~--~~~rvtl~G~a~~v~~ee~~~l~~~y~~~~P~~-~~~~~---~df~l~rL~p~~v~~v~GFG~a~~  223 (327)
                               ++.  +++||||.|++++|++++...++++|+++||++ .|.++   +||.||||+|++|+||||||++  
T Consensus        83 ~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP~a~~w~~~~~~hdf~~~rl~i~~v~~vgGFG~~--  160 (170)
T PF13883_consen   83 GGDCDNSGVDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHPDAKHWLPFNSPHDFFFYRLEIERVYLVGGFGGA--  160 (170)
T ss_dssp             SSHHHHHT--TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-GGGGGS-GG---G--EEEEEEEEEEEEE-SSSS---
T ss_pred             CCcccccCCCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCcCccccccccccCccEEEEEEEEEEEEECccCCc--
Confidence                     233  789999999999999888888999999999999 89999   9999999999999999999999  


Q ss_pred             CCccCChhhhh
Q 020331          224 GSGEFSKEEYQ  234 (327)
Q Consensus       224 ~~~~v~~~e~~  234 (327)
                        +||+++||.
T Consensus       161 --~~i~~~~Y~  169 (170)
T PF13883_consen  161 --AWISAEEYY  169 (170)
T ss_dssp             --EEE-HHHHH
T ss_pred             --eEeCHHHhc
Confidence              889999996

>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF10615 DUF2470: Protein of unknown function (DUF2470); InterPro: IPR019595 This entry represents a putative haem-iron utilisation family of proteins, as many members are annotated as being pyridoxamine 5'-phosphate oxidase-related, FMN-binding; however the function of this domain is not known Back     alignment and domain information
>KOG3374 consensus Cellular repressor of transcription [Transcription] Back     alignment and domain information
>PRK03467 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family Back     alignment and domain information
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family Back     alignment and domain information
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1 Back     alignment and domain information
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family Back     alignment and domain information
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme Back     alignment and domain information
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP) Back     alignment and domain information
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional Back     alignment and domain information
>COG0748 HugZ Putative heme iron utilization protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only] Back     alignment and domain information
>TIGR00558 pdxH pyridoxamine-phosphate oxidase Back     alignment and domain information
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism] Back     alignment and domain information
>PRK06733 hypothetical protein; Provisional Back     alignment and domain information
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional Back     alignment and domain information
>COG5015 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase Back     alignment and domain information
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein Back     alignment and domain information
>PF04299 FMN_bind_2: Putative FMN-binding domain; InterPro: IPR007396 In Bacillus subtilis, family member P21341 from SWISSPROT, PAI 2, is involved in the negative regulation of protease synthesis and sporulation [] Back     alignment and domain information
>PF04075 DUF385: Domain of unknown function (DUF385) ; InterPro: IPR004378 This entry represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces Back     alignment and domain information
>KOG2586 consensus Pyridoxamine-phosphate oxidase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E Back     alignment and domain information
>COG2808 PaiB Transcriptional regulator [Transcription] Back     alignment and domain information
>COG3576 Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query327
2arz_A247 Crystal Structure Of Protein Of Unknown Function Fr 3e-19
1vl7_A157 Crystal Structure Of A Putative Heme Oxygenase (Alr 8e-05
3dnh_A258 The Crystal Structure Of The Protein Atu2129 (Unkno 5e-04
>pdb|2ARZ|A Chain A, Crystal Structure Of Protein Of Unknown Function From Pseudomonas Aeruginosa Length = 247 Back     alignment and structure 
Iteration: 1

 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 124/238 (52%), Gaps = 22/238 (9%)
Query: 93  RTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSL 152
           R +L +  R +LST S+K+ G+P GS+V +  DA+G P++ +S +A HT +L A+P+CS+
Sbjct: 13  RELLLKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSM 72
Query: 153 LVA-RDPEDRTDLV-ITLHGDATSVAEKDKAAIRAVYLAKHP-NAFWVDFGDFQFMRIEP 209
           LV  R  ED   +  +TL  +A  +AE++ AA    Y    P +A +    DF F  ++P
Sbjct: 73  LVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYHRVHDFDFWVLQP 132
Query: 210 KAVRYVSGVATALLGSGEFSKEEYQAANVDPIA-----QFSKPVASHMNRDHAEDTRIIV 264
              R++ G          F    + AA   P+A     +  + +  HMN DHA      V
Sbjct: 133 VQWRFIGG----------FGAIHWLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYV 182
Query: 265 QHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKILIVEMLQA 322
           + +     A+A +  +D+ GF+++ G QG  +   +PFP    +   V+  +V++ +A
Sbjct: 183 ELAGLPAHAAAQLAGIDTEGFHLRIG-QGLHW---LPFPAACGNPGAVRQALVQLARA 236
>pdb|1VL7|A Chain A, Crystal Structure Of A Putative Heme Oxygenase (Alr5027) From Nostoc Sp. Pcc 7120 At 1.50 A Resolution Length = 157 Back     alignment and structure
>pdb|3DNH|A Chain A, The Crystal Structure Of The Protein Atu2129 (Unknown Function) From Agrobacterium Tumefaciens Str. C58 Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query327
3dnh_A258 Uncharacterized protein ATU2129; APC6114, agrobact 8e-46
2arz_A247 Hypothetical protein PA4388; hypothetical protein, 8e-42
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 6e-35
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 1e-27
3gas_A259 Heme oxygenase; FMN-binding split barrel, oxidored 1e-25
3gas_A 259 Heme oxygenase; FMN-binding split barrel, oxidored 6e-15
3swj_A251 CHUZ, putative uncharacterized protein; heme oxyge 4e-21
3swj_A 251 CHUZ, putative uncharacterized protein; heme oxyge 7e-13
3f7e_A131 Pyridoxamine 5'-phosphate oxidase-related, FMN- bi 1e-09
3ec6_A139 General stress protein 26; alpha-beta structure, s 3e-08
2hq7_A146 Protein, related to general stress protein 26(GS2 6e-06
1rfe_A162 Hypothetical protein RV2991; structural genomics, 1e-05
3db0_A128 LIN2891 protein; putative pyridoxamine 5'-phosphat 2e-05
2i02_A148 General stress protein of COG3871; pyridoxamine 5' 1e-04
2fhq_A141 Putative general stress protein; alpha-beta struct 3e-04
2aq6_A147 Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos 8e-04
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Length = 258 Back     alignment and structure
 Score =  155 bits (392), Expect = 8e-46
 Identities = 47/245 (19%), Positives = 98/245 (40%), Gaps = 11/245 (4%)

Query: 82  AAARLPPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHT 141
           A A    +   R VL  S    L+T      GYP  +  +   + DGTP    + L +H 
Sbjct: 22  AGAPFEAVRVARDVLHTSRTAALATLDPV-SGYPYTTATNIGIEPDGTPFFFAAGLTLHA 80

Query: 142 KDLLANPKCSLLVARDPED--RTDLVITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVD 198
           +++  + + S+ +A   +    T   +TL G A  +   +     A Y+A++P A  ++ 
Sbjct: 81  RNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLS 140

Query: 199 FGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAE 258
             D +  R+  + V+   G A     +   +      +  + +   ++  A+ +N    E
Sbjct: 141 LPDTRLYRLRTEGVQINGGPARN-ASNITPADLRTDLSGAEELMAAAESEATRLNAIKGE 199

Query: 259 DTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKILIVE 318
            +R+ V            +  +D  G ++ +     +   R+ F  R E  K  +  + +
Sbjct: 200 ASRLAVLA--GAKTGRWKITSIDPDGIDLASA----SDLARLWFAERVETLKQFEKALAQ 253

Query: 319 MLQAA 323
           +L+ +
Sbjct: 254 LLKGS 258
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Length = 247 Back     alignment and structure
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Length = 184 Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Length = 157 Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Length = 259 Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Length = 259 Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Length = 251 Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Length = 251 Back     alignment and structure
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Length = 131 Back     alignment and structure
>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} Length = 139 Back     alignment and structure
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1 Length = 146 Back     alignment and structure
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Length = 162 Back     alignment and structure
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua} Length = 128 Back     alignment and structure
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1 Length = 148 Back     alignment and structure
>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Length = 141 Back     alignment and structure
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A* Length = 147 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query327
3dnh_A258 Uncharacterized protein ATU2129; APC6114, agrobact 100.0
2arz_A247 Hypothetical protein PA4388; hypothetical protein, 100.0
1xhn_A184 CREG, cellular repressor of E1A-stimulated genes; 99.97
3gas_A259 Heme oxygenase; FMN-binding split barrel, oxidored 99.96
3swj_A251 CHUZ, putative uncharacterized protein; heme oxyge 99.96
3tgv_A148 Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} 99.95
1vl7_A157 Hypothetical protein ALR5027; structural genomics, 99.91
3gas_A 259 Heme oxygenase; FMN-binding split barrel, oxidored 99.72
2asf_A137 Hypothetical protein RV2074; H37RV, structural gen 99.69
3swj_A 251 CHUZ, putative uncharacterized protein; heme oxyge 99.68
2iab_A155 Hypothetical protein; NP_828636.1, structural geno 99.68
2hq7_A146 Protein, related to general stress protein 26(GS2 99.66
3f7e_A131 Pyridoxamine 5'-phosphate oxidase-related, FMN- bi 99.66
3ec6_A139 General stress protein 26; alpha-beta structure, s 99.65
1rfe_A162 Hypothetical protein RV2991; structural genomics, 99.65
3db0_A128 LIN2891 protein; putative pyridoxamine 5'-phosphat 99.64
2i02_A148 General stress protein of COG3871; pyridoxamine 5' 99.63
2fhq_A141 Putative general stress protein; alpha-beta struct 99.63
2re7_A134 Uncharacterized protein; general stress protein CO 99.61
2fg9_A178 5-nitroimidazole antibiotic resistance protein; ST 99.58
2hhz_A150 Pyridoxamine 5'-phosphate oxidase-related; structu 99.57
2hti_A185 BH0577 protein; structural genomics, joint center 99.57
3u5w_A148 Putative uncharacterized protein; ssgcid, seattle 99.56
2aq6_A147 Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phos 99.53
2ig6_A150 NIMC/NIMA family protein; structural genomics, joi 99.52
3dmb_A147 Putative general stress protein 26 with A PNP-OXI 99.51
3u35_A182 General stress protein; PNP-oxidase like fold, FMN 99.47
2hq9_A149 MLL6688 protein; structural genomics, joint center 99.47
2qea_A160 Putative general stress protein 26; structural gen 99.45
3fkh_A138 Putative pyridoxamine 5'-phosphate oxidase; NP_601 99.44
2fur_A209 Hypothetical protein; structural genomics, joint c 99.43
3cp3_A148 Uncharacterized protein; alpha-beta fold, structur 99.38
2htd_A140 Predicted flavin-nucleotide-binding protein from f 99.36
2vpa_A216 NIMA-related protein; cofactor, atomic resolution, 99.3
2q9k_A151 Uncharacterized protein; split barrel-like fold, s 99.28
1dnl_A199 Pyridoxine 5'-phosphate oxidase; beta barrel, prot 99.26
3ba3_A145 Protein LP_0091, pyridoxamine 5'-phosphate oxidase 99.18
1nrg_A261 Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidore 99.15
1ty9_A222 Phenazine biosynthesis protein PHZG; chorismate, o 99.11
1ci0_A228 Protein (PNP oxidase); B6 metabolism, structural g 99.06
2a2j_A246 Pyridoxamine 5'-phosphate oxidase; beta barrel, st 98.98
2i51_A195 Uncharacterized conserved protein of COG5135; pyri 98.95
2ol5_A202 PAI 2 protein; structural genomics, PSI-2, protein 98.94
2ou5_A175 Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; 98.92
3r5l_A122 Deazaflavin-dependent nitroreductase; PA-824, spli 98.3
3a6r_A122 FMN-binding protein; electron transport, flavoprot 98.26
3in6_A148 FMN-binding protein; structural genomics, joint ce 98.26
3h96_A143 F420-H2 dependent reductase A; pnpox, flavin, afla 97.79
3r5y_A147 Putative uncharacterized protein; PA-824, nitroimi 97.7
3r5z_A145 Putative uncharacterized protein; split barrel-lik 97.65
>3dnh_A Uncharacterized protein ATU2129; APC6114, agrobacterium tumefaciens STR. C58 structural genomics, PSI-2, protein structure initiative; 1.94A {Agrobacterium tumefaciens} Back     alignment and structure
Probab=100.00  E-value=1.5e-52  Score=388.93  Aligned_cols=225  Identities=19%  Similarity=0.299  Sum_probs=207.3

Q ss_pred             CcHHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC--CCCcce
Q 020331           87 PPLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP--EDRTDL  164 (327)
Q Consensus        87 s~ae~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~--~~~~~~  164 (327)
                      ..++++|+||+++++|+|||++ ..+|.|++|+|+|++|++|.+||+++.+++|++||++||||||+|.+++  ++..++
T Consensus        27 ~~~~~ar~lL~~~~~g~LaTv~-~~dG~P~~s~v~y~~d~~g~~~~~~s~~~~h~~NL~~dprvSl~V~~~~~~d~~~~~  105 (258)
T 3dnh_A           27 EAVRVARDVLHTSRTAALATLD-PVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLP  105 (258)
T ss_dssp             CHHHHHHHHHHHCCEEEEEEEC-TTTCCEEEEEEECEECTTSCEEEEEETTSHHHHHHHHCCEEEEEECCGGGSCGGGSC
T ss_pred             HHHHHHHHHHHhCCEEEEEecc-CCCCceEEEEEEEEECCCCCEEEEEeCCcHHHHHHhhCCCEEEEEecCCCCChhhCC
Confidence            4678999999999999999996 2589999999999999889999999999999999999999999999876  567889


Q ss_pred             EEEEEEEEEEecchhHHHHHHHHHHhCCCC-ccccCCCeEEEEEEEeEEEEEecCcc-cccCCccCChhhhhc--ccCCc
Q 020331          165 VITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSGVAT-ALLGSGEFSKEEYQA--ANVDP  240 (327)
Q Consensus       165 rvtl~G~a~~v~~ee~~~l~~~y~~~~P~~-~~~~~~df~l~rL~p~~v~~v~GFG~-a~~~~~~v~~~e~~~--A~pDp  240 (327)
                      ||+|+|+++.+++++.++++++|.++||++ .|.+++||.||||+|++++|++|||+ +    +||+++||.+  |.|||
T Consensus       106 rvtl~G~a~~v~~~e~~~l~~~y~~rhP~a~~~~~~~df~l~rl~~~~v~~v~GFG~~a----~~v~~~d~~~~~a~~d~  181 (258)
T 3dnh_A          106 RLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNA----SNITPADLRTDLSGAEE  181 (258)
T ss_dssp             EEEEEEEEEECCGGGHHHHHHHHHHHCTTHHHHTSSTTEEEEEEEEEEEEEEC----------CCCCHHHHSCCCTTCHH
T ss_pred             eEEEEEEEEEcCchHHHHHHHHHHHHCcChHHcccCCCeEEEEEEEeEEEEEcccCccc----ccCCHHHhcccCCCCch
Confidence            999999999999888889999999999998 89999999999999999999999999 9    8999999999  88999


Q ss_pred             ccccchhhHhhhhhcCHHHHHHHHHHhCCCCCCcEEEEEeeCCCcEEEEcccCCeEEEEEcCCCCCCCHhHHHHHHHHHH
Q 020331          241 IAQFSKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKILIVEML  320 (327)
Q Consensus       241 la~~~~~ii~HMN~dH~d~l~~~~~~~~~~~~~~a~m~~vD~~G~~lr~~~~~~~~~~RipF~~pv~~~~e~r~~Lv~m~  320 (327)
                      |+..+++||+|||+|| |++..||+ |+++++++|+|++||++||+|+++.    ..+||||+   +|.+++|++|++|+
T Consensus       182 l~~~~~~ii~hmN~dH-d~l~~~~~-~~~~~~~~a~~~~vD~~G~dl~~~~----~~~Ri~F~---~d~~~~r~~lv~m~  252 (258)
T 3dnh_A          182 LMAAAESEATRLNAIK-GEASRLAV-LAGAKTGRWKITSIDPDGIDLASAS----DLARLWFA---ERVETLKQFEKALA  252 (258)
T ss_dssp             HHHHHHHHHHHHHTST-THHHHHHH-HTTCCCSSCEEEEEETTEEEEECSS----CEEEEECS---SCCCSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhH-HHHHHHHH-hCCCCCCcEEEEEEccCcCEEEECC----EEEEeeCC---CCHHHHHHHHHHHH
Confidence            9999999999999999 99999999 9998889999999999999999852    69999999   99999999999999


Q ss_pred             HHhhc
Q 020331          321 QAANS  325 (327)
Q Consensus       321 ~~A~~  325 (327)
                      ++|++
T Consensus       253 ~~ar~  257 (258)
T 3dnh_A          253 QLLKG  257 (258)
T ss_dssp             HHTC-
T ss_pred             HHhhc
Confidence            99985
>2arz_A Hypothetical protein PA4388; hypothetical protein,structural genomics,MCSG, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa} SCOP: b.45.1.1 Back     alignment and structure
>1xhn_A CREG, cellular repressor of E1A-stimulated genes; beta-barrel, unknown function; HET: MSE; 1.95A {Homo sapiens} SCOP: b.45.1.1 Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Back     alignment and structure
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae} Back     alignment and structure
>1vl7_A Hypothetical protein ALR5027; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 1.50A {Nostoc SP} SCOP: b.45.1.1 Back     alignment and structure
>3gas_A Heme oxygenase; FMN-binding split barrel, oxidoreductase; HET: HEM; 1.80A {Helicobacter pylori} Back     alignment and structure
>2asf_A Hypothetical protein RV2074; H37RV, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: CIT; 1.60A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial iron aquisition, heme bindin; HET: HEM; 2.41A {Campylobacter jejuni} Back     alignment and structure
>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis} Back     alignment and structure
>2hq7_A Protein, related to general stress protein 26(GS2 B.subtilis; NP_350077.1, structural genomics, joint center for structural genomics; 2.00A {Clostridium acetobutylicum} SCOP: b.45.1.1 Back     alignment and structure
>3f7e_A Pyridoxamine 5'-phosphate oxidase-related, FMN- binding; F420 dependent reductase, unknown function; HET: MSE; 1.23A {Mycobacterium smegmatis} Back     alignment and structure
>3ec6_A General stress protein 26; alpha-beta structure, structural genomics of niaid; HET: FAD; 1.60A {Bacillus anthracis} SCOP: b.45.1.0 Back     alignment and structure
>1rfe_A Hypothetical protein RV2991; structural genomics, TB, FMN BIN PSI, protein structure initiative, TB structural genomics consortium; 2.00A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>3db0_A LIN2891 protein; putative pyridoxamine 5'-phosphate oxidase, STR genomics, joint center for structural genomics, JCSG; 2.00A {Listeria innocua} Back     alignment and structure
>2i02_A General stress protein of COG3871; pyridoxamine 5'-phosphate like family protein, structural genomics, joint center for structural genomics; HET: MSE FMN P33; 1.80A {Nostoc punctiforme} SCOP: b.45.1.1 Back     alignment and structure
>2fhq_A Putative general stress protein; alpha-beta structure, structural genomics, PSI, protein STRU initiative; HET: MSE; 1.87A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>2re7_A Uncharacterized protein; general stress protein COG3871, structural genomics, joint C structural genomics, JCSG; 2.50A {Psychrobacter arcticus} Back     alignment and structure
>2fg9_A 5-nitroimidazole antibiotic resistance protein; STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: FAD; 2.20A {Bacteroides thetaiotaomicron} SCOP: b.45.1.1 Back     alignment and structure
>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.00A {Streptococcus suis} Back     alignment and structure
>2hti_A BH0577 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, FMN-binding protein; HET: FAD; 2.50A {Bacillus halodurans} SCOP: b.45.1.1 Back     alignment and structure
>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural genomics center for infectious DI FMN-binding protein; 2.05A {Brucella melitensis biovar abortus} SCOP: b.45.1.0 PDB: 3u0i_A Back     alignment and structure
>2aq6_A Pyridoxine 5'-phosphate oxidase; pyridoxal 5'-phosphate, STR genomics, PSI, protein structure initiative, TB structural consortium; HET: PLP; 1.70A {Mycobacterium tuberculosis} SCOP: b.45.1.1 PDB: 1xxo_A 1y30_A* 1w9a_A* Back     alignment and structure
>2ig6_A NIMC/NIMA family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: FMN; 1.80A {Clostridium acetobutylicum} Back     alignment and structure
>3dmb_A Putative general stress protein 26 with A PNP-OXI fold; PNP-oxidase like fold, structural genomics; HET: MSE; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>3u35_A General stress protein; PNP-oxidase like fold, FMN/FAD, protein BI; HET: PGE; 2.50A {Xanthomonas axonopodis PV} PDB: 3u34_A* Back     alignment and structure
>2hq9_A MLL6688 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FAD; 1.95A {Mesorhizobium loti} SCOP: b.45.1.1 Back     alignment and structure
>2qea_A Putative general stress protein 26; structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.46A {Jannaschia SP} Back     alignment and structure
>3fkh_A Putative pyridoxamine 5'-phosphate oxidase; NP_601736.1, STR genomics, joint center for structural genomics, JCSG; HET: P33; 2.51A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2fur_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.80A {Thermoplasma acidophilum} SCOP: b.45.1.1 Back     alignment and structure
>3cp3_A Uncharacterized protein; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} Back     alignment and structure
>2htd_A Predicted flavin-nucleotide-binding protein from family structurally related to pyridoxine...; putative pyridoxamine 5'-phosphate oxidase; HET: MSE; 1.60A {Lactobacillus delbrueckii subsp} Back     alignment and structure
>2vpa_A NIMA-related protein; cofactor, atomic resolution, antibiotic resistance, oxidoreductase; 1.2A {Deinococcus radiodurans} SCOP: b.45.1.1 PDB: 1w3p_A 1w3q_A 1w3r_A* 1w3o_A 2x1k_A 2x1j_A Back     alignment and structure
>2q9k_A Uncharacterized protein; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.59A {Exiguobacterium sibiricum} Back     alignment and structure
>1dnl_A Pyridoxine 5'-phosphate oxidase; beta barrel, protein-FMN complex, oxidoreductase; HET: MSE FMN; 1.80A {Escherichia coli K12} SCOP: b.45.1.1 PDB: 1g79_A* 1g76_A* 1g78_A* 1g77_A* 1jnw_A* 1wv4_A* Back     alignment and structure
>3ba3_A Protein LP_0091, pyridoxamine 5'-phosphate oxidase-like protein; NP_783940.1, structural genomics; HET: MSE; 1.55A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A* Back     alignment and structure
>1ty9_A Phenazine biosynthesis protein PHZG; chorismate, oxidoreductase; HET: FMN; 1.80A {Pseudomonas fluorescens} SCOP: b.45.1.1 PDB: 1t9m_A* Back     alignment and structure
>1ci0_A Protein (PNP oxidase); B6 metabolism, structural genomics, PSI, protein structure initiative; HET: FMN; 2.70A {Saccharomyces cerevisiae} SCOP: b.45.1.1 Back     alignment and structure
>2a2j_A Pyridoxamine 5'-phosphate oxidase; beta barrel, structural genomics, mycobacterium tuberculosis structural proteomics project, XMTB; HET: CME; 2.50A {Mycobacterium tuberculosis} SCOP: b.45.1.1 Back     alignment and structure
>2i51_A Uncharacterized conserved protein of COG5135; pyridoxamine 5'-phosphate oxidase-related protein, structura genomics; HET: MSE FMN; 1.40A {Nostoc punctiforme} Back     alignment and structure
>2ol5_A PAI 2 protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.50A {Geobacillus stearothermophilus} Back     alignment and structure
>2ou5_A Pyridoxamine 5'-phosphate oxidase-related, FMN-BI; split barrel-like fold, structural genomics, joint center FO structural genomics, JCSG; HET: MSE FMN; 1.60A {Jannaschia SP} Back     alignment and structure
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A* Back     alignment and structure
>3a6r_A FMN-binding protein; electron transport, flavoprotein; HET: FMN; 1.20A {Desulfovibrio vulgaris} PDB: 1axj_A* 1flm_A* 3awh_A* 3amf_A* 3a6q_A* 1wll_A* 3a20_A* 1wli_A* 1wlk_A* 2e83_A* Back     alignment and structure
>3in6_A FMN-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: FMN; 2.12A {Syntrophomonas wolfei subsp} Back     alignment and structure
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str} Back     alignment and structure
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica} Back     alignment and structure
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 327
d2arza1238 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Ps 1e-53
d1xhna1170 b.45.1.1 (A:13-182) Cellular repressor of E1A-stim 5e-34
d1vl7a_135 b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanob 5e-22
d2i02a1143 b.45.1.1 (A:5-147) General stress protein 26 {Nost 6e-05
d1rfea_160 b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobac 2e-04
d2hq9a1148 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {M 0.002
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Length = 238 Back     information, alignment and structure

class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  173 bits (440), Expect = 1e-53
 Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 12/240 (5%)

Query: 90  EEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPK 149
           +  R +L +  R +LST S+K+ G+P GS+V +  DA+G P++ +S +A HT +L A+P+
Sbjct: 6   KNARELLLKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPR 65

Query: 150 CSLLVARDPEDRTD--LVITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDFGDFQFMR 206
           CS+LV     +       +TL  +A  +AE++ AA    Y    P +  +    DF F  
Sbjct: 66  CSMLVGERGAEDIQAVGRLTLLAEARQLAEEEVAAAAERYYRYFPESADYHRVHDFDFWV 125

Query: 207 IEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQFSKPVASHMNRDHAEDTRIIVQH 266
           ++P   R++ G      G+  +   E          +  + +  HMN DHA      V+ 
Sbjct: 126 LQPVQWRFIGG-----FGAIHWLAAERVPLANPFAGEAERGMVEHMNSDHAAAIAHYVEL 180

Query: 267 STSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKILIVEMLQAANSH 326
           +     A+A +  +D+ GF+++ G         +PFP    +   V+  +V++ +A    
Sbjct: 181 AGLPAHAAAQLAGIDTEGFHLRIG----QGLHWLPFPAACGNPGAVRQALVQLARAERWP 236
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Length = 135 Back     information, alignment and structure
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Length = 143 Back     information, alignment and structure
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 160 Back     information, alignment and structure
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]} Length = 148 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query327
d2arza1238 Hypothetical protein PA4388 {Pseudomonas aeruginos 100.0
d1xhna1170 Cellular repressor of E1A-stimulated genes CREG1 { 100.0
d1vl7a_135 Hypothetical protein Alr5027 {Cyanobacterium (Nost 99.95
d1rfea_160 Hypothetical protein Rv2991 {Mycobacterium tubercu 99.69
d2asfa1125 Hypothetical protein Rv2074 {Mycobacterium tubercu 99.69
d2hq7a1141 Hypotheical protein CAC3491 {Clostridium acetobuty 99.64
d2i02a1143 General stress protein 26 {Nostoc punctiforme pcc 99.63
d1w9aa_142 Hypothetical protein Rv1155 {Mycobacterium tubercu 99.6
d2hq9a1148 Hypothetical protein Mll6688 {Mesorhizobium loti [ 99.59
d2fhqa1135 Putative general stress protein BT1439 {Bacteroide 99.59
d2fg9a1157 5-nitroimidazole resistance protein BT3078 {Bacter 99.58
d2htia1156 Hypothetical protein BH0577 {Bacillus halodurans [ 99.47
d1flma_122 FMN-binding protein {Desulfovibrio vulgaris, strai 99.27
d2fura1193 Hypothetical protein Ta1372 {Thermoplasma acidophi 99.24
d2vpaa1194 NimA-related protein DR0842 {Deinococcus radiodura 99.21
d1t9ma_204 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseu 98.31
d1dnla_199 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Esch 98.29
d2a2ja1201 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Myco 98.24
d1nrga_213 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Huma 98.16
d1ci0a_205 Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Bake 98.16
d2ptfa1206 Uncharacterized protein MTH863 {Methanobacterium t 84.53
>d2arza1 b.45.1.1 (A:2-239) Hypothetical protein PA4388 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
class: All beta proteins
fold: Split barrel-like
superfamily: FMN-binding split barrel
family: PNP-oxidase like
domain: Hypothetical protein PA4388
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=4.8e-55  Score=398.94  Aligned_cols=230  Identities=28%  Similarity=0.448  Sum_probs=215.4

Q ss_pred             cHHHHHHHHhcCCeEEEEeecCCCCCcceEEEeeEEEcCCCcEEEEecCCchHHHhhhhCCceEEEEeeCC--CCCcceE
Q 020331           88 PLEEIRTVLDRSVRGMLSTFSQKYEGYPSGSMVDFACDADGTPILAVSSLAVHTKDLLANPKCSLLVARDP--EDRTDLV  165 (327)
Q Consensus        88 ~ae~ar~lL~~~~~~~LATv~~~~dG~P~~S~v~y~~d~~G~~~~~vs~~s~htrNL~~dprvSL~V~~~~--~~~~~~r  165 (327)
                      .++.||+||+++++|+|||++.+.+|+|++|+|+|++|++|++||++|.++.|++||.+||||||+|.+++  ++..+.|
T Consensus         4 ~a~~aR~ll~~~~~~~LsT~~~~~~G~P~~S~v~~a~d~~G~p~~~~S~la~Ht~NL~~d~rvSL~v~~~~~~~~~~~~R   83 (238)
T d2arza1           4 AAKNARELLLKEYRAVLSTHSKKWPGFPFGSVVPYCLDAEGRPLILISRIAQHTHNLQADPRCSMLVGERGAEDIQAVGR   83 (238)
T ss_dssp             HHHHHHHHHHHCSEEEEEEECSSSTTCEEEEEEECEECTTSCEEEEEETTSHHHHHHHHCCEEEEEEECTTCSSTTSSCE
T ss_pred             HHHHHHHHHhhCCeEEEEecCCCCCCCceEEEEEEEECCCCCEEEEEecchHhhHhhhcCCcEEEEEEcCCccccccccc
Confidence            57899999999999999999855569999999999999999999999999999999999999999999877  6778899


Q ss_pred             EEEEEEEEEecchhHHHHHHHHHHhCCCC-ccccCCCeEEEEEEEeEEEEEecCcccccCCccCChhhhhcccCCccccc
Q 020331          166 ITLHGDATSVAEKDKAAIRAVYLAKHPNA-FWVDFGDFQFMRIEPKAVRYVSGVATALLGSGEFSKEEYQAANVDPIAQF  244 (327)
Q Consensus       166 vtl~G~a~~v~~ee~~~l~~~y~~~~P~~-~~~~~~df~l~rL~p~~v~~v~GFG~a~~~~~~v~~~e~~~A~pDpla~~  244 (327)
                      +++.|.++++++++.+.++++|.++||++ .|.+++||.||+|+|++++||+|||++    +||++++|.++.|+ +...
T Consensus        84 ~tl~g~~~~~~~~e~~~~~~~~~~rhP~~~~~~~~~Df~~~~l~~~~~~~V~GFG~a----~~i~~~~~~~~~~~-~~~~  158 (238)
T d2arza1          84 LTLLAEARQLAEEEVAAAAERYYRYFPESADYHRVHDFDFWVLQPVQWRFIGGFGAI----HWLAAERVPLANPF-AGEA  158 (238)
T ss_dssp             EEEEEEEEECCHHHHHHHHHHHHHHCGGGTTCBTTBBEEEEEEEEEEEEEECTTCCE----EEEETTTSCCCCTT-TTHH
T ss_pred             eeeeeeeEecCchHHHHHHHHHHHhccchhhhcccCcEEEEEEeeeEEEEEcCCCcc----ccccHHHhhhccch-hhhh
Confidence            99999999999888888999999999999 899999999999999999999999999    88999999876655 4667


Q ss_pred             chhhHhhhhhcCHHHHHHHHHHhCCCCCCcEEEEEeeCCCcEEEEcccCCeEEEEEcCCCCCCCHhHHHHHHHHHHHHhh
Q 020331          245 SKPVASHMNRDHAEDTRIIVQHSTSIPVASAYMLDLDSLGFNVKAGYQGNTFKLRIPFPRRAEDRKDVKILIVEMLQAAN  324 (327)
Q Consensus       245 ~~~ii~HMN~dH~d~l~~~~~~~~~~~~~~a~m~~vD~~G~~lr~~~~~~~~~~RipF~~pv~~~~e~r~~Lv~m~~~A~  324 (327)
                      +++||+|||+||.|++..|+++++++..++|+|++||++||+|+++.    ..+||||++|+++.+++|++|++|+++||
T Consensus       159 ~~~ii~hmN~dH~d~l~~~~~~~~~~~~~~a~m~~iD~~G~~l~~~~----~~~ri~F~~~~~~~~~~r~~lv~l~~~ar  234 (238)
T d2arza1         159 ERGMVEHMNSDHAAAIAHYVELAGLPAHAAAQLAGIDTEGFHLRIGQ----GLHWLPFPAACGNPGAVRQALVQLARAER  234 (238)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHCCCCSSCCEEEEECSSEEEEEETT----EEEEEECSSCCCSHHHHHHHHHHHHHCSS
T ss_pred             hHHHHhhcchhhHHHHHHHHHHhCCCCCCceEEEEEccCcCEEEECC----EEEEEeCCCcCCCHHHHHHHHHHHHHHhh
Confidence            88999999999999999999999998889999999999999999963    58999999999999999999999999999


Q ss_pred             cC
Q 020331          325 SH  326 (327)
Q Consensus       325 ~~  326 (327)
                      .+
T Consensus       235 ~~  236 (238)
T d2arza1         235 WP  236 (238)
T ss_dssp             CC
T ss_pred             cc
Confidence            75
>d1xhna1 b.45.1.1 (A:13-182) Cellular repressor of E1A-stimulated genes CREG1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vl7a_ b.45.1.1 (A:) Hypothetical protein Alr5027 {Cyanobacterium (Nostoc sp. PCC 7120) [TaxId: 103690]} Back     information, alignment and structure
>d1rfea_ b.45.1.1 (A:) Hypothetical protein Rv2991 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2asfa1 b.45.1.1 (A:11-135) Hypothetical protein Rv2074 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2hq7a1 b.45.1.1 (A:2-142) Hypotheical protein CAC3491 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2i02a1 b.45.1.1 (A:5-147) General stress protein 26 {Nostoc punctiforme pcc 73102 [TaxId: 63737]} Back     information, alignment and structure
>d1w9aa_ b.45.1.1 (A:) Hypothetical protein Rv1155 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2hq9a1 b.45.1.1 (A:1-148) Hypothetical protein Mll6688 {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2htia1 b.45.1.1 (A:10-165) Hypothetical protein BH0577 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1flma_ b.45.1.1 (A:) FMN-binding protein {Desulfovibrio vulgaris, strain Miyazaki F [TaxId: 881]} Back     information, alignment and structure
>d2fura1 b.45.1.1 (A:16-208) Hypothetical protein Ta1372 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2vpaa1 b.45.1.1 (A:2-195) NimA-related protein DR0842 {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1t9ma_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1dnla_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nrga_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ci0a_ b.45.1.1 (A:) Pyridoxine 5'-phoshate oxidase (PNP oxidase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ptfa1 b.45.1.4 (A:15-220) Uncharacterized protein MTH863 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure