Citrus Sinensis ID: 020348

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDVDKKETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLSLDESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSISSSYQQPQNVFDPSSRASVGKEDRPEVSGNDL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
myqpnsvpssslvrsnslvhgqhldcgssqmdpmnggnslnnnpslaskqRLRWTHELHERFVDAVaqlggpdratpkgvlrVMGVQGLTIYHVKSHLQKYRLakylpdsssdvdkketgdmlssldgssgMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSgvlteapgsggsapasgdncqepdkktdpatpaptsesplqdkaakehvpakslsldesfssqnepltpdsgcnvsspsqspkgersmkkQRVDMETayakpemvlthpilessisssyqqpqnvfdpssrasvgkedrpevsgndl
Flexible Loop (DISEMBL)
myqpnsvpssslVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHERFVDAvaqlggpdratpkGVLRVMGVQGLTIYHVKSHLQKYRLAKYlpdsssdvdKKETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATPAPtsesplqdkaAKEHVPAKSLSLDESFSSQnepltpdsgcnvsspsqspkgersmkkqRVDMETAYAKPEMVLTHPILESSISSSYQQPQNvfdpssrasvgkedrpevsgndl
Low Complexity Region (SEG)
MYQpnsvpssslvrsnslVHGQHLDCGSSQMDpmnggnslnnnpslASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDVDKKETgdmlssldgssgmQITEALKLQMEVQKrlheqlevqrqlqlrieAQGKYLKKIIEEQQRLSGVLTEapgsggsapasgDNCQEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLSLDESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSISSSYQQPQNVFDPSSRASVGKEDRPEVSGNDL
Disordered region (IsUnstruct)
***************************************************LRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL**********************************************VQRQLQLRIEAQGKYLKKII**********************************************************************************************************************************************************
Disordered Region (DISOPRED)
****************************************************RWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL********************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**************SNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDVDKKETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLT****************************************************************************************VDMETAYAKPEMVLTHPILESSIS*******************************
Disordered Region (DISPRO)
**************************************************RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL***********************GMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLS********************************************************************************************************VL*****************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDVDKKETGDMLSSLDGSSGMQIxxxxxxxxxxxxxxxxxxxxxRQLQLRIEAQGKYLKKIIEEQQRLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLSLDESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSISSSYQQPQNVFDPSSRASVGKEDRPEVSGNDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	327	2.2.26 [Sep-21-2011]
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.446	0.353	0.562	1e-41
Q9SAK5	358	Myb family transcription	no	no	0.406	0.371	0.604	2e-40
Q9C616	388	Probable transcription fa	no	no	0.296	0.25	0.441	3e-14
Q93WJ9	403	Transcription repressor K	no	no	0.192	0.156	0.6	1e-13
Q941I2	322	Probable transcription fa	no	no	0.229	0.232	0.532	1e-13
Q0J235	532	Probable transcription fa	no	no	0.272	0.167	0.468	3e-13
Q700D9	255	Putative Myb family trans	no	no	0.159	0.203	0.692	5e-13
Q9FJV5	276	Probable transcription fa	no	no	0.168	0.199	0.618	7e-13
Q9FGT7	635	Two-component response re	no	no	0.238	0.122	0.456	3e-10
O49397	552	Two-component response re	no	no	0.192	0.114	0.5	3e-10

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  170 bits (430), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 86/153 (56%), Positives = 114/153 (74%), Gaps = 7/153 (4%)

Query: 32  DPMNGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTI 91
           D ++G NS  ++    SKQR+RWT ELHE FV+AV QLGG +RATPK VL+++   GLTI
Sbjct: 216 DQLSGRNS--SSSVATSKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTI 273

Query: 92  YHVKSHLQKYRLAKYLPDSSSDVDKKETGDMLS-----SLDGSSGMQITEALKLQMEVQK 146
           YHVKSHLQKYR A+Y P++S    + +   M S     SLD  + ++IT+AL+LQMEVQK
Sbjct: 274 YHVKSHLQKYRTARYKPETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQALRLQMEVQK 333

Query: 147 RLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRL 179
           RLHEQLE+QR LQL+IE QG+YL+ + E+QQ++
Sbjct: 334 RLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQKI 366

Transcription factor acting as central integrator of phosphate starvation responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  166 bits (420), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/139 (60%), Positives = 104/139 (74%), Gaps = 6/139 (4%)

Query: 49  KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK--- 105
           K RLRWT ELHERFVDAVAQLGGPD+ATPK ++RVMGV+GLT+YH+KSHLQK+RL K   
Sbjct: 34  KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPH 93

Query: 106 --YLPDSSSDVDKKETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIE 163
             Y   S+ +  +    D+  ++  SSGM      ++QMEVQ+RLHEQLEVQR LQLRIE
Sbjct: 94  KEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLRIE 153

Query: 164 AQGKYLKKIIEEQ-QRLSG 181
           AQGKY++ I+E   Q L+G
Sbjct: 154 AQGKYMQSILERACQTLAG 172

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 5/102 (4%)

Query: 51  RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDS 110
           R+RWT  LH RFV AV  LGG +RATPK VL +M V+ LT+ HVKSHLQ YR  K     
Sbjct: 215 RMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK----- 269

Query: 111 SSDVDKKETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQL 152
           ++D     +G      +GSSG   ++     M  + R  E+L
Sbjct: 270 TTDKAAASSGQSDVYENGSSGDNNSDDWMFDMNRKSRDSEEL 311

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 45/65 (69%), Gaps = 2/65 (3%)

Query: 51  RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL--P 108
           R+RWT  LH RFV AV  LGG +RATPK VL +M V+ LT+ HVKSHLQ YR  K    P
Sbjct: 221 RMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNKP 280

Query: 109 DSSSD 113
            +SSD
Sbjct: 281 AASSD 285

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/77 (53%), Positives = 48/77 (62%), Gaps = 2/77 (2%)

Query: 51  RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL--P 108
           R+RWT  LH  FV AV  LGG +RATPK VL +M VQ LT+ HVKSHLQ YR  K    P
Sbjct: 166 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEKP 225

Query: 109 DSSSDVDKKETGDMLSS 125
            +SS     E G  ++S
Sbjct: 226 TTSSGQSDCENGSQVNS 242

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 55/96 (57%), Gaps = 7/96 (7%)

Query: 33  PMNGGNSLNNNPSLASKQ-----RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQ 87
           P  G  +    P L +K+     R+RWT  LH RFV AV  LGG +RATPK VL +M V+
Sbjct: 303 PFVGALASRFMPKLPAKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVK 362

Query: 88  GLTIYHVKSHLQKYRLAKYL--PDSSSDVDKKETGD 121
            LT+ HVKSHLQ YR  K    P +SS      +GD
Sbjct: 363 DLTLAHVKSHLQMYRTVKSTDKPAASSGPADGGSGD 398

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 40/52 (76%)

Query: 51  RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102
           RLRWT ELH  FV AV  LGG  +ATPK VL++M V+GLTI HVKSHLQ YR
Sbjct: 25  RLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/55 (61%), Positives = 39/55 (70%)

Query: 51  RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 105
           R+RWT  LH  FV AV  LGG +RATPK VL +M V+ LT+ HVKSHLQ YR  K
Sbjct: 107 RMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 161

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 3/81 (3%)

Query: 49  KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 108
           K R+ W+ ELH++FV AV QLG  D+A PK +L +M ++GLT  +V SHLQKYRL  YL 
Sbjct: 194 KPRVVWSQELHQKFVSAVQQLG-LDKAVPKKILDLMSIEGLTRENVASHLQKYRL--YLK 250

Query: 109 DSSSDVDKKETGDMLSSLDGS 129
                  +  T D   + D S
Sbjct: 251 KIDEGQQQNMTPDAFGTRDSS 271

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/64 (50%), Positives = 44/64 (68%), Gaps = 1/64 (1%)

Query: 41  NNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQK 100
           N++P+   K R+ WTHELH +F+ AV  L G +RA PK +L +M V  LT  +V SHLQK
Sbjct: 175 NDDPTAQKKPRVLWTHELHNKFLAAVDHL-GVERAVPKKILDLMNVDKLTRENVASHLQK 233

Query: 101 YRLA 104
           +R+A
Sbjct: 234 FRVA 237

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
359496884	336	PREDICTED: uncharacterized protein LOC10	0.978	0.952	0.815	1e-150
255568528	336	transcription factor, putative [Ricinus	0.993	0.967	0.809	1e-148
224124782	314	predicted protein [Populus trichocarpa]	0.926	0.964	0.801	1e-137
147840891	306	hypothetical protein VITISV_035498 [Viti	0.886	0.947	0.826	1e-136
255638496	329	unknown [Glycine max]	0.908	0.902	0.783	1e-133
356555797	329	PREDICTED: uncharacterized protein LOC10	0.908	0.902	0.783	1e-133
224089499	360	predicted protein [Populus trichocarpa]	0.993	0.902	0.734	1e-130
388498370	321	unknown [Lotus japonicus]	0.944	0.962	0.722	1e-128
357448191	330	Two-component response regulator EHD1 [M	0.917	0.909	0.771	1e-123
217073354	330	unknown [Medicago truncatula]	0.917	0.909	0.765	1e-122

>gi|359496884|ref|XP_002272588.2| PREDICTED: uncharacterized protein LOC100248144 [Vitis vinifera]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 269/330 (81%), Positives = 289/330 (87%), Gaps = 10/330 (3%)

Query: 1   MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHE 60
           MYQP +VPS SLV +NSLVHGQH DCG++ MDP+NGGNSLNNNPSLASKQRLRWTHELHE
Sbjct: 1   MYQPKAVPSPSLVHNNSLVHGQHSDCGANTMDPINGGNSLNNNPSLASKQRLRWTHELHE 60

Query: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD---VDKK 117
           RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD    DKK
Sbjct: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKK 120

Query: 118 ETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQ 177
           E+GDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQ
Sbjct: 121 ESGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQ 180

Query: 178 RLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLSLD 237
           RLSGV+TE PGSG S P SGDNC E D KTDPATPAPTSE PL DKAAKE  PAKSLS+D
Sbjct: 181 RLSGVITEVPGSGVSVPVSGDNCLESD-KTDPATPAPTSEGPLLDKAAKETAPAKSLSID 239

Query: 238 ESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSISS 297
           ESFSS +EPLTPDSGC+V+SP +SPKGERS+KKQRV +  AYAK EMVLTH ILESS+SS
Sbjct: 240 ESFSSHHEPLTPDSGCHVNSPDESPKGERSVKKQRVSIGAAYAKQEMVLTHQILESSLSS 299

Query: 298 SYQQPQNV------FDPSSRASVGKEDRPE 321
           S+ QP +V      FDP +  S+  ED+ E
Sbjct: 300 SFHQPHSVFLNRDQFDPQAGISISNEDQLE 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568528|ref|XP_002525238.1| transcription factor, putative [Ricinus communis] gi|223535535|gb|EEF37204.1| transcription factor, putative [Ricinus communis]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 272/336 (80%), Positives = 292/336 (86%), Gaps = 11/336 (3%)

Query: 1   MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHE 60
           MYQ  SVPSSSLV  +SLVHGQHLDCG+S+MD +NG NSLNNNPSLASKQRLRWTHELHE
Sbjct: 1   MYQLKSVPSSSLVHKSSLVHGQHLDCGASRMDAINGENSLNNNPSLASKQRLRWTHELHE 60

Query: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD---VDKK 117
           RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD    DKK
Sbjct: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKK 120

Query: 118 ETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQ 177
           ETGDMLS+LDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQ
Sbjct: 121 ETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQ 180

Query: 178 RLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLSLD 237
           RLSGVL E PG+  +AP SGDNC E D KTDPATPAPTSESP+QDKAAKE  PAKSLS+D
Sbjct: 181 RLSGVLGEVPGAVAAAPVSGDNCPESDNKTDPATPAPTSESPIQDKAAKERAPAKSLSID 240

Query: 238 ESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSISS 297
           ESFSS++EPLTPDS CNV SP++SPKGERSMKKQRV M T+Y K EMVLTH ILESS+ +
Sbjct: 241 ESFSSRHEPLTPDSRCNVGSPAESPKGERSMKKQRVCMGTSYGKSEMVLTHQILESSL-N 299

Query: 298 SYQQPQNV------FDPSSRASVGKEDRPE-VSGND 326
           SY QP ++      FDPSS  S G +D  E V G+D
Sbjct: 300 SYPQPHSLFLSREQFDPSSGLSTGNDDHIEKVPGSD 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124782|ref|XP_002329947.1| predicted protein [Populus trichocarpa] gi|222871969|gb|EEF09100.1| predicted protein [Populus trichocarpa]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 251/313 (80%), Positives = 270/313 (86%), Gaps = 10/313 (3%)

Query: 24  LDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRV 83
           LDC +  MDP+NGGNSLNNNP+LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRV
Sbjct: 3   LDCEAMTMDPINGGNSLNNNPNLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRV 62

Query: 84  MGVQGLTIYHVKSHLQKYRLAKYLPDSSSD---VDKKETGDMLSSLDGSSGMQITEALKL 140
           MGVQGLTIYHVKSHLQKYRLAKYLPDSSSD   VDKKETGD+LS+ DGSSGMQITEALKL
Sbjct: 63  MGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKVDKKETGDVLSNSDGSSGMQITEALKL 122

Query: 141 QMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLTEAPGSGGSAPASGDNC 200
           QMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVL + PGSG SAP SGDNC
Sbjct: 123 QMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLEDVPGSGVSAPVSGDNC 182

Query: 201 QEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLSLDESFSSQNEPLTPDSGCNVSSPSQ 260
              D KTDPATPAPTSESPLQDK AKE  P KSLS+DESFSSQ+EPLTPDS CN  SP++
Sbjct: 183 PVSDNKTDPATPAPTSESPLQDKVAKECAPTKSLSIDESFSSQHEPLTPDSRCNTGSPAE 242

Query: 261 SPKGERSMKKQRVDMETAYAKPEMVLTHPILESSISSSYQQPQNV------FDPSSRASV 314
           SP+GERS+KKQ V M  A+ KPEMVLTH ILESS+ +SY QP +       FDPSS  S+
Sbjct: 243 SPRGERSLKKQMVSMGVAFGKPEMVLTHQILESSL-NSYPQPHSAFLTREQFDPSSGLSM 301

Query: 315 GKEDRPEVSGNDL 327
           G ED+ EV G+DL
Sbjct: 302 GNEDQSEVLGSDL 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840891|emb|CAN66505.1| hypothetical protein VITISV_035498 [Vitis vinifera]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 248/300 (82%), Positives = 264/300 (88%), Gaps = 10/300 (3%)

Query: 31  MDPMNGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLT 90
           MDP+NGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLT
Sbjct: 1   MDPINGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLT 60

Query: 91  IYHVKSHLQKYRLAKYLPDSSSD---VDKKETGDMLSSLDGSSGMQITEALKLQMEVQKR 147
           IYHVKSHLQKYRLAKYLPDSSSD    DKKE+GDMLSSLDGSSGMQITEALKLQMEVQKR
Sbjct: 61  IYHVKSHLQKYRLAKYLPDSSSDGKKADKKESGDMLSSLDGSSGMQITEALKLQMEVQKR 120

Query: 148 LHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLTEAPGSGGSAPASGDNCQEPDKKT 207
           LHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGV+TE PGSG S P SGDNC E D KT
Sbjct: 121 LHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSGVITEVPGSGVSVPVSGDNCLESD-KT 179

Query: 208 DPATPAPTSESPLQDKAAKEHVPAKSLSLDESFSSQNEPLTPDSGCNVSSPSQSPKGERS 267
           DPATPAPTSE PL DKAAKE  PAKSLS+DESFSS +EPLTPDSGC+V+SP +SPKGERS
Sbjct: 180 DPATPAPTSEGPLLDKAAKETAPAKSLSIDESFSSHHEPLTPDSGCHVNSPXESPKGERS 239

Query: 268 MKKQRVDMETAYAKPEMVLTHPILESSISSSYQQPQNV------FDPSSRASVGKEDRPE 321
           +KKQRV +  AYAK EMVLTH ILESS+SSS+ QP +V      FDP +  S+  ED+ E
Sbjct: 240 VKKQRVSIGAAYAKQEMVLTHQILESSLSSSFHQPHSVFLNRDQFDPQAGISISNEDQLE 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638496|gb|ACU19557.1| unknown [Glycine max]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/310 (78%), Positives = 263/310 (84%), Gaps = 13/310 (4%)

Query: 1   MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHE 60
           MY   +VPS+SL+  NSL HGQH+DCG S MDP +GGN L+NN +L SKQRLRWTHELHE
Sbjct: 1   MYHSKNVPSASLIGGNSLSHGQHIDCGGSTMDPGSGGNGLSNNSNLTSKQRLRWTHELHE 60

Query: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD----VDK 116
           RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD     DK
Sbjct: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADK 120

Query: 117 KETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ 176
           KETGDMLS+LDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ
Sbjct: 121 KETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ 180

Query: 177 QRLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLSL 236
           QRLSGVL+EAPGSG  A   GD CQEPD KTDP+TP P       +KAAK+  PAKSLS+
Sbjct: 181 QRLSGVLSEAPGSGAVAVVPGDACQEPDNKTDPSTPDP-------EKAAKDRAPAKSLSI 233

Query: 237 DESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSIS 296
            ESFSS  EP+TPDSGC+V SP++SPKGERS KKQRV M+  Y+KPEMVL H ILESS+ 
Sbjct: 234 -ESFSSHPEPMTPDSGCHVGSPAESPKGERSAKKQRVTMDGVYSKPEMVLPHQILESSM- 291

Query: 297 SSYQQPQNVF 306
           SSYQQP  VF
Sbjct: 292 SSYQQPNTVF 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555797|ref|XP_003546216.1| PREDICTED: uncharacterized protein LOC100786925 isoform 1 [Glycine max] gi|356555799|ref|XP_003546217.1| PREDICTED: uncharacterized protein LOC100786925 isoform 2 [Glycine max]

 Score =  480 bits (1235), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 243/310 (78%), Positives = 263/310 (84%), Gaps = 13/310 (4%)

Query: 1   MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHE 60
           MY   +VPS+SL+  NSL HGQH+DCG S MDP +GGN L+NN +L SKQRLRWTHELHE
Sbjct: 1   MYHSKNVPSASLIGGNSLSHGQHIDCGGSTMDPGSGGNGLSNNSNLTSKQRLRWTHELHE 60

Query: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD----VDK 116
           RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD     DK
Sbjct: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKADK 120

Query: 117 KETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ 176
           KETGDMLS+LDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ
Sbjct: 121 KETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ 180

Query: 177 QRLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLSL 236
           QRLSGVL+EAPGSG  A   GD CQEPD KTDP+TP P       +KAAK+  PAKSLS+
Sbjct: 181 QRLSGVLSEAPGSGAVAVVPGDACQEPDNKTDPSTPDP-------EKAAKDRAPAKSLSI 233

Query: 237 DESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSIS 296
            ESFSS  EP+TPDSGC+V SP++SPKGERS KKQRV M+  Y+KPEMVL H ILESS+ 
Sbjct: 234 -ESFSSHPEPMTPDSGCHVGSPAESPKGERSAKKQRVTMDGVYSKPEMVLPHQILESSM- 291

Query: 297 SSYQQPQNVF 306
           SSYQQP  VF
Sbjct: 292 SSYQQPNTVF 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089499|ref|XP_002308734.1| predicted protein [Populus trichocarpa] gi|222854710|gb|EEE92257.1| predicted protein [Populus trichocarpa]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 266/362 (73%), Positives = 287/362 (79%), Gaps = 37/362 (10%)

Query: 1   MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHE 60
           MYQ  SVPSSS V  N LV+ Q+LDC    MDP+NGGN+LNNNP+LASKQRLRWTHELHE
Sbjct: 1   MYQLESVPSSSSVHKNLLVNDQYLDCDDMTMDPINGGNNLNNNPNLASKQRLRWTHELHE 60

Query: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD---VDKK 117
           RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD    DKK
Sbjct: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKADKK 120

Query: 118 ETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLE------------------------ 153
           ETGDM+S+LDGSSGMQITEALKLQMEVQKRLHEQLE                        
Sbjct: 121 ETGDMISNLDGSSGMQITEALKLQMEVQKRLHEQLEACFPCTRHPINCAIMCGDFYAHVS 180

Query: 154 -VQRQLQLRIEAQGKYLKKIIEEQQRLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATP 212
            VQRQLQLRIEAQGKYLKKIIEEQQRLSGVL + PGSG +AP SGDNC E D KTDPATP
Sbjct: 181 LVQRQLQLRIEAQGKYLKKIIEEQQRLSGVLEDVPGSGVTAPVSGDNCPESD-KTDPATP 239

Query: 213 APTSESPLQDKAAKEHVPAKSLSLDESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQR 272
           APTSESPLQDKAAKE  PAKSLS+DESFSSQ EPLTPDS CN  SP++SP+GERSMKKQR
Sbjct: 240 APTSESPLQDKAAKERAPAKSLSIDESFSSQPEPLTPDSRCNAGSPAESPRGERSMKKQR 299

Query: 273 VDMETAYAKPEMVLTHPILESSISSSYQQPQNV------FDPSSRASVGKEDRPE-VSGN 325
           V M   Y K EMVLTH ILESS+ +SY +P +       FDPSS  S+G ED+ E VSG+
Sbjct: 300 VSMGVTYGKQEMVLTHQILESSL-NSYPRPHSAFLGREQFDPSSGLSMGIEDQMEKVSGS 358

Query: 326 DL 327
           D+
Sbjct: 359 DV 360

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498370|gb|AFK37251.1| unknown [Lotus japonicus]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 245/339 (72%), Positives = 271/339 (79%), Gaps = 30/339 (8%)

Query: 1   MYQPN--SVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHEL 58
           MY P   +VPSS+L+ SNSLVHGQH+DCG S MDP NGGNSL+NN +L SKQRLRWTHEL
Sbjct: 1   MYHPKIQNVPSSTLIGSNSLVHGQHIDCGDSTMDPGNGGNSLSNNSNLTSKQRLRWTHEL 60

Query: 59  HERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD----V 114
           HERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD     
Sbjct: 61  HERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDEGKKA 120

Query: 115 DKKETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIE 174
           DKKETGDMLS+LDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIE
Sbjct: 121 DKKETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIE 180

Query: 175 EQQRLSGVLTEAPGSGGSAPASGDNCQEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSL 234
           EQQRLSGV +EAP          D C+EPD KTDPATP P       +KAAK+H PAKSL
Sbjct: 181 EQQRLSGVFSEAP---------ADVCREPDNKTDPATPDP-------EKAAKQHAPAKSL 224

Query: 235 SLDESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESS 294
           S+ ESFSS +EP+TPDS C+V SP+ SPK ERS KKQRV M+ AY+KP++VL H ILESS
Sbjct: 225 SI-ESFSSHHEPMTPDSACHVGSPADSPKEERSAKKQRVSMDGAYSKPDIVLPHQILESS 283

Query: 295 ISSSYQQPQNV------FDPSSRASVGKEDRPEVSGNDL 327
           +  SYQQP  V      FD S   S   E+  ++ G++L
Sbjct: 284 M-PSYQQPTTVFLTQEHFDSSLGISTRSEELEKIGGSNL 321

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448191|ref|XP_003594371.1| Two-component response regulator EHD1 [Medicago truncatula] gi|355483419|gb|AES64622.1| Two-component response regulator EHD1 [Medicago truncatula]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/320 (77%), Positives = 262/320 (81%), Gaps = 20/320 (6%)

Query: 1   MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHE 60
           MY P +VP SSLV SN LVHGQH+D G S MDP +GGNSL NN +L SKQRLRWTHELHE
Sbjct: 1   MYHPTNVPDSSLVGSNPLVHGQHIDSGRSAMDPGSGGNSLANNSNLNSKQRLRWTHELHE 60

Query: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD----VDK 116
           RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPD SSD     DK
Sbjct: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDCSSDEGKKTDK 120

Query: 117 KETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ 176
           KETGDMLS+LDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ
Sbjct: 121 KETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ 180

Query: 177 QRLSGVLTEAPGSGGSAPASGDNC-QEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLS 235
           QRLSGVL+EAPGSG SAP  GD   QE D KT+PATP P       +KAAKEH PAKSLS
Sbjct: 181 QRLSGVLSEAPGSGVSAPTPGDMFQQELDNKTEPATPDP-------EKAAKEHAPAKSLS 233

Query: 236 LDESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSI 295
             ESFSS +EP+TPDSGC V SP+ SP GERS KKQRV +E AY K +MVL H ILESS+
Sbjct: 234 A-ESFSSHHEPMTPDSGCQVGSPADSPNGERSTKKQRVSVEGAYLKSDMVLPHQILESSM 292

Query: 296 SSSYQQP------QNVFDPS 309
             SYQQP      Q+ FDPS
Sbjct: 293 -PSYQQPNAIFLTQDHFDPS 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073354|gb|ACJ85036.1| unknown [Medicago truncatula]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 245/320 (76%), Positives = 261/320 (81%), Gaps = 20/320 (6%)

Query: 1   MYQPNSVPSSSLVRSNSLVHGQHLDCGSSQMDPMNGGNSLNNNPSLASKQRLRWTHELHE 60
           MY P +VP SSLV SN LVHGQH+D G S MDP +GGNSL NN +L SKQRLRWTHELHE
Sbjct: 1   MYHPTNVPDSSLVGSNPLVHGQHIDSGRSAMDPGSGGNSLANNSNLNSKQRLRWTHELHE 60

Query: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSD----VDK 116
           RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKY+PD SSD     DK
Sbjct: 61  RFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYVPDCSSDEGKKTDK 120

Query: 117 KETGDMLSSLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ 176
           KETGDMLS+LDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ
Sbjct: 121 KETGDMLSNLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQ 180

Query: 177 QRLSGVLTEAPGSGGSAPASGDNC-QEPDKKTDPATPAPTSESPLQDKAAKEHVPAKSLS 235
           QRLSGVL+EAPGSG SAP  GD   QE D KT+PATP P       +KAAKEH PAKSLS
Sbjct: 181 QRLSGVLSEAPGSGVSAPTPGDMFQQELDNKTEPATPDP-------EKAAKEHAPAKSLS 233

Query: 236 LDESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSI 295
             ESF S +EP+TPDSGC V SP+ SP GERS KKQRV +E AY K +MVL H ILESS+
Sbjct: 234 A-ESFPSHHEPMTPDSGCQVGSPADSPNGERSTKKQRVSVEGAYLKSDMVLPHQILESSM 292

Query: 296 SSSYQQP------QNVFDPS 309
             SYQQP      Q+ FDPS
Sbjct: 293 -PSYQQPNAIFLTQDHFDPS 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.819	0.937	0.599	3.1e-76
TAIR|locus:2100880	442	AT3G04450 [Arabidopsis thalian	0.565	0.418	0.369	1.2e-28
TAIR|locus:2139865	409	PHR1 "phosphate starvation res	0.501	0.400	0.450	3.1e-28
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.403	0.319	0.481	4.5e-27
TAIR|locus:2089260	449	AT3G13040 [Arabidopsis thalian	0.538	0.391	0.378	4.9e-27
TAIR|locus:2026739	337	AT1G69580 [Arabidopsis thalian	0.177	0.172	0.637	7.2e-26
TAIR|locus:2170199	375	AT5G06800 [Arabidopsis thalian	0.400	0.349	0.439	1.4e-25
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.406	0.371	0.460	5.9e-25
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.183	0.152	0.666	6.2e-25
TAIR|locus:2038957	397	AT2G20400 "AT2G20400" [Arabido	0.397	0.327	0.484	3.3e-24

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 172/287 (59%), Positives = 195/287 (67%)

Query:    47 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKY 106
             ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKY
Sbjct:    13 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKY 72

Query:   107 LPDSSSD---VDKKETXXXXXXXXXXXXXQITEALKLQMEVQKXXXXXXXXXXXXXXXXX 163
             LPDSSS+    DKKE+             QITEALKLQMEVQK                 
Sbjct:    73 LPDSSSEGKKTDKKESGDMLSGLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIE 132

Query:   164 AQGKYLKKIIEEQQRLSGVLTEXXXXXXXXXXXXDNCQEPDKKTDPATPAPTSESPLQDK 223
             AQGKYLKKIIEEQQRLSGVL E                     +DPATPAPTSESPLQDK
Sbjct:   133 AQGKYLKKIIEEQQRLSGVLGEPSAPVTGD-------------SDPATPAPTSESPLQDK 179

Query:   224 AAKEHVPAKSLSLDESFSSQNEPLTPDSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPE 283
             + K+  P KSLS+DES SS  EPLTPDSGCN+ SP +S   ER  KK R+    A   P+
Sbjct:   180 SGKDCGPDKSLSVDESLSSYREPLTPDSGCNIGSPDESTGEERLSKKPRLVRGAAGYTPD 239

Query:   284 MVLTHPILESSISSSYQQPQNV--FDPSSRASVGKEDR-PEVSGNDL 327
             +V+ HPILES +++SY Q  +V  FD  S + +G E++  +VSG++L
Sbjct:   240 IVVGHPILESGLNTSYHQSDHVLAFDQPSTSLLGAEEQLDKVSGDNL 286

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2100880 AT3G04450 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 75/203 (36%), Positives = 106/203 (52%)

Query:    48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL 107
             SKQR+RWT ELHE FV+A+ QLGG +RATPK VL+++   GLT+YHVKSHLQKYR A+Y 
Sbjct:   237 SKQRMRWTPELHEAFVEAINQLGGSERATPKAVLKLINSPGLTVYHVKSHLQKYRTARYK 296

Query:   108 PDSSSDVDKK-----ETXXXXXXXXXXXXXQITEALKLQMEVQKXXXXXXXXXXXXXXXX 162
             P+ S D ++      +T             +ITEAL+LQM+VQK                
Sbjct:   297 PELSKDTEEPLVKNLKTIEDIKSLDLKTSIEITEALRLQMKVQKQLHEQLEIQRSLQLQI 356

Query:   163 XAQGKYLKKIIEEQQRLSGVLTEXXXXXXXXXXXXDNCQEPDKKTDPATPAPTSESPLQD 222
               QG+YL+ +IE+QQ++     +                 P+   DP+ P+P    P   
Sbjct:   357 EEQGRYLQMMIEKQQKMQENKKDSTSSSSM----------PE--ADPSAPSPNLSQPFLH 404

Query:   223 KAAKEHVPAKSLSLDESFSSQNE 245
             KA     P+ +  L    S+ ++
Sbjct:   405 KATNSE-PSITQKLQNGSSTMDQ 426

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2139865 PHR1 "phosphate starvation response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 78/173 (45%), Positives = 96/173 (55%)

Query:    49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 108
             K R+RWT ELHE FV+AV  LGG +RATPKGVL++M V+GLTIYHVKSHLQKYR A+Y P
Sbjct:   225 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYRTARYRP 284

Query:   109 DSSS--DVDKKET-XXXXXXXXXXXXXQITEALKLQMEVQKXXXXXXXXXXXXXXXXXAQ 165
             + S     ++K T               ITEAL+LQMEVQK                  Q
Sbjct:   285 EPSETGSPERKLTPLEHITSLDLKGGIGITEALRLQMEVQKQLHEQLEIQRNLQLRIEEQ 344

Query:   166 GKYLKKIIEEQQRLSGVLTEXXXXXXXXXXXXDNCQEPDKKTDPATPAPTSES 218
             GKYL+ + E+Q   SG LT+            +  QE DKKT  +   P  E+
Sbjct:   345 GKYLQMMFEKQN--SG-LTKGTASTSDSAAKSE--QE-DKKTADSKEVPEEET 391

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0055063 "sulfate ion homeostasis" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0071486 "cellular response to high light intensity" evidence=IMP

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 66/137 (48%), Positives = 85/137 (62%)

Query:    48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL 107
             SKQR+RWT ELHE FV+AV QLGG +RATPK VL+++   GLTIYHVKSHLQKYR A+Y 
Sbjct:   230 SKQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYK 289

Query:   108 PDSSSDV----DKKETXXXXXXXXXXXXX-QITEALKLQMEVQKXXXXXXXXXXXXXXXX 162
             P++S       +KK T              +IT+AL+LQMEVQK                
Sbjct:   290 PETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQALRLQMEVQKRLHEQLEIQRSLQLQI 349

Query:   163 XAQGKYLKKIIEEQQRL 179
               QG+YL+ + E+QQ++
Sbjct:   350 EKQGRYLQMMFEKQQKI 366

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2089260 AT3G13040 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.9e-27, P = 4.9e-27
 Identities = 70/185 (37%), Positives = 97/185 (52%)

Query:    49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 108
             K R+RWT ELHE FV AV +L GP++ATPK V ++M V+GLTIYHVKSHLQKYRLAKY+P
Sbjct:   241 KSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQKYRLAKYMP 300

Query:   109 DSSSD--VDKKETXXXXXXXXXXX-----XXQITEALKLQMEVQKXXXXXXXXXXXXXXX 161
             +   +   D  E                   Q+TEAL++QMEVQK               
Sbjct:   301 EKKEEKRTDNSEEKKLALSKSEADEKKKGAIQLTEALRMQMEVQKQLHEQLEVQRVLQLR 360

Query:   162 XXAQGKYLKKIIEEQQRLSGVLTEXXXXXXXXXXXXDNCQEPDKKTDPATPAPTSESPLQ 221
                  KYL+K++EEQ++    ++                 +   KT  ++P P    P +
Sbjct:   361 IEEHAKYLEKMLEEQRKTGRWISSSSQTVLSPSDDSIPDSQNMSKTKASSPQPPL--PAE 418

Query:   222 DKAAK 226
             +KA++
Sbjct:   419 NKASE 423

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2026739 AT1G69580 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 7.2e-26, Sum P(2) = 7.2e-26
 Identities = 37/58 (63%), Positives = 51/58 (87%)

Query:    48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 105
             +K RL+WT +LH +F++AV QLGGP++ATPKG+++VM + GLT+YH+KSHLQKYRL K
Sbjct:    33 AKPRLKWTCDLHHKFIEAVNQLGGPNKATPKGLMKVMEIPGLTLYHLKSHLQKYRLGK 90

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

TAIR|locus:2170199 AT5G06800 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 58/132 (43%), Positives = 81/132 (61%)

Query:    48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL 107
             +K R+RWT +LHE+FV+ V +LGG D+ATPK +L+ M   GLTI+HVKSHLQKYR+AKY+
Sbjct:   191 NKTRIRWTQDLHEKFVECVNRLGGADKATPKAILKRMDSDGLTIFHVKSHLQKYRIAKYM 250

Query:   108 PDSSSD-VDKKETXXXXXXXXXXXXXQITEALKLQMEVQKXXXXXXXXXXXXXXXXXAQG 166
             P+S     +K+               QI EAL+LQ++VQ+                  QG
Sbjct:   251 PESQEGKFEKRACAKELSQLDTRTGVQIKEALQLQLDVQRHLHEQLEIQRNLQLRIEEQG 310

Query:   167 KYLKKIIEEQQR 178
             K LK ++E+QQ+
Sbjct:   311 KQLKMMMEQQQK 322

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 64/139 (46%), Positives = 80/139 (57%)

Query:    49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 108
             K RLRWT ELHERFVDAVAQLGGPD+ATPK ++RVMGV+GLT+YH+KSHLQK+RL K   
Sbjct:    34 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPH 93

Query:   109 DSSSDVDKKETXXXXXXXXXXXXXQITEAL-----KLQMEVQKXXXXXXXXXXXXXXXXX 163
                 D   KE                +  +     ++QMEVQ+                 
Sbjct:    94 KEYGDHSTKEGSRASAMDIQRNVASSSGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLRIE 153

Query:   164 AQGKYLKKIIEEQ-QRLSG 181
             AQGKY++ I+E   Q L+G
Sbjct:   154 AQGKYMQSILERACQTLAG 172

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 6.2e-25, Sum P(2) = 6.2e-25
 Identities = 40/60 (66%), Positives = 53/60 (88%)

Query:    48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL 107
             +K RL+WT +LHERF++AV QLGG D+ATPK +++VMG+ GLT+YH+KSHLQKYRL+K L
Sbjct:    44 AKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSHLQKYRLSKNL 103

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2038957 AT2G20400 "AT2G20400" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 64/132 (48%), Positives = 77/132 (58%)

Query:    47 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKY 106
             A+K R+RWT ELHE FVDAV QLGG + ATPKGVL+ M V+GLTI+HVKSHLQKYR AKY
Sbjct:   229 AAKGRMRWTPELHEVFVDAVNQLGGSNEATPKGVLKHMKVEGLTIFHVKSHLQKYRTAKY 288

Query:   107 LP-DSSSDVDKKET-XXXXXXXXXXXXXQITEALKLQMEVQKXXXXXXXXXXXXXXXXXA 164
             +P  S    + + T               ITE L++QME QK                  
Sbjct:   289 IPVPSEGSPEARLTPLEQITSDDTKRGIDITETLRIQMEHQKKLHEQLESLRTMQLRIEE 348

Query:   165 QGKYLKKIIEEQ 176
             QGK L  +IE+Q
Sbjct:   349 QGKALLMMIEKQ 360

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	327
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	2e-24
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	7e-24
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	5e-09
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-08

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 93.6 bits (233), Expect = 2e-24
 Identities = 34/57 (59%), Positives = 42/57 (73%)

Query: 49  KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK 105
           K R+ WT +LH+RF+ AV +LGGPD ATPK +L +M V GLT   V SHLQKYRL +
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 91.9 bits (229), Expect = 7e-24
 Identities = 38/51 (74%), Positives = 46/51 (90%)

Query: 131 GMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSG 181
           GMQITEAL+LQMEVQ+RLHEQLEVQR LQ+RIEAQGKYL++I+E+ Q+   
Sbjct: 1   GMQITEALRLQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 56.7 bits (136), Expect = 5e-09
 Identities = 30/54 (55%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 49  KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102
           K ++ WT ELH RFV AV QLG  ++A P  +L +MGVQ LT +++ SHLQKYR
Sbjct: 235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR 287

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 51  RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR 102
           R  WT E  E  ++AV + G  +      + + +   G T    K+    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.9
PLN03162	526	golden-2 like transcription factor; Provisional	99.9
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.85
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.41
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	91.3
smart00426	68	TEA TEA domain.	85.9

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.90  E-value=4e-24  Score=158.08  Aligned_cols=50  Identities=76%  Similarity=1.068  Sum_probs=47.9

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 020348          131 GMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLS  180 (327)
Q Consensus       131 g~qitEALrlQmEVQrrLhEQLEVQR~LQLRIEaQGKYLq~iLEkqq~l~  180 (327)
                      ||+|+|||++||||||||||||||||+||+|||||||||++|||+|++..
T Consensus         1 g~~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~   50 (51)
T PF14379_consen    1 GMQITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKAL   50 (51)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999999999999999998754

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.90  E-value=5.5e-24  Score=208.16  Aligned_cols=65  Identities=46%  Similarity=0.678  Sum_probs=60.1

Q ss_pred             CCCCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhhccCCC
Q 020348           44 PSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPD  109 (327)
Q Consensus        44 ~~~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~p~  109 (327)
                      ....+|+||+||+|||+|||+||++|| .++||||+||++|+|+|||++||||||||||+.+++..
T Consensus       230 ~~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~  294 (526)
T PLN03162        230 APGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLA  294 (526)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhccccc
Confidence            345789999999999999999999999 79999999999999999999999999999999877533

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.85  E-value=9.5e-22  Score=146.83  Aligned_cols=56  Identities=61%  Similarity=0.981  Sum_probs=54.3

Q ss_pred             CCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhh
Q 020348           49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA  104 (327)
Q Consensus        49 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~  104 (327)
                      |+|++||+|+|.+|++||+.||+.+.||||.|+++|++++||+.||+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            78999999999999999999998899999999999999999999999999999985

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.41  E-value=0.00026  Score=49.88  Aligned_cols=48  Identities=29%  Similarity=0.391  Sum_probs=40.9

Q ss_pred             CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhH
Q 020348           51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR  102 (327)
Q Consensus        51 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR  102 (327)
                      |..||++-+..|++||.++|.-   .-+.|-+.|+ .+-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~---~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKD---NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTT---HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCc---HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            5689999999999999999932   5678999998 7899999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=91.30  E-value=0.42  Score=36.16  Aligned_cols=39  Identities=38%  Similarity=0.565  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-Hhccc
Q 020348          144 VQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQR-LSGVL  183 (327)
Q Consensus       144 VQrrLhEQLEVQR~LQLRIEaQGKYLq~iLEkqq~-l~g~~  183 (327)
                      +=..|..|+||||.|.=.+|.| |-||.-+|.+.+ +...+
T Consensus         4 i~EALr~QmEvQrrLhEQLEvQ-r~Lqlrieaqgkyl~~il   43 (51)
T PF14379_consen    4 ITEALRMQMEVQRRLHEQLEVQ-RHLQLRIEAQGKYLQSIL   43 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHH
Confidence            3367889999999999999998 778887887755 44433

>smart00426 TEA TEA domain

Probab=85.90  E-value=0.92  Score=36.14  Aligned_cols=18  Identities=22%  Similarity=0.573  Sum_probs=16.4

Q ss_pred             ccCHHHHHHHHHHHHHhC
Q 020348           53 RWTHELHERFVDAVAQLG   70 (327)
Q Consensus        53 rWT~ELH~rFV~AV~qLG   70 (327)
                      .|.++|-..|++|+..+-
T Consensus         5 vWp~~lE~Af~~aL~~~~   22 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP   22 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC
Confidence            699999999999998875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	327
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		2e-08

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 49  KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA 104
           K R+ WTHELH +F+ AV  LG  +RA PK +L +M V  LT  +V SHLQK+R+A
Sbjct: 5   KPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	327
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	6e-25
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 94.6 bits (235), Expect = 6e-25
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 45  SLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA 104
           +   K R+ WTHELH +F+ AV  LG  +RA PK +L +M V  LT  +V SHLQK+R+A
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 105 K 105
            
Sbjct: 60  L 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 47/319 (14%), Positives = 101/319 (31%), Gaps = 84/319 (26%)

Query: 28  SSQMDPMNGGNSLNNNPSLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQ 87
             Q D +      N+N   A     R   + + +   A+ +L    R     ++  +   
Sbjct: 113 IEQRDRLY-----NDNQVFAKYNVSR--LQPYLKLRQALLEL----RPAKNVLIDGVLGS 161

Query: 88  GLTIYHVKSHL-----QKYRLAKYLPDSSS--DVDKKETGDMLSSLDGSSGMQITEALKL 140
           G      K+ +       Y++   +       ++    + + +        +++ + L  
Sbjct: 162 G------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV--------LEMLQKLLY 207

Query: 141 QMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQRLSG--VLTEAPGSGGSAPASGD 198
           Q++       + +    ++LRI +    L+++++ +   +   VL               
Sbjct: 208 QID--PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--------------L 251

Query: 199 NCQEPDKKTDPA---------TPAPTSESPLQDKAAKEHVPAKSLSLDESFSSQNEPLTP 249
           N Q  + K   A         T   T    + D  +        +SLD      +  LTP
Sbjct: 252 NVQ--NAKAWNAFNLSCKILLT---TRFKQVTDFLSAATT--THISLDH----HSMTLTP 300

Query: 250 DSGCNVSSPSQSPKGERSMKKQRVDMETAYAKPEMVLTHPILESSISSSYQQPQNVFDPS 309
           D   ++               + +D        E++ T+P   S I+ S +     +D  
Sbjct: 301 DEVKSLLL-------------KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 310 SRASVGKEDRP-EVSGNDL 327
              +  K     E S N L
Sbjct: 348 KHVNCDKLTTIIESSLNVL 366

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	327
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	93.32
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	92.05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	91.91
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	90.68
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	89.3
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	88.16
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	87.35
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	86.29
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	83.85
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	82.59
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	81.11
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	80.99

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=3.6e-29  Score=190.56  Aligned_cols=61  Identities=49%  Similarity=0.750  Sum_probs=57.6

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhhccC
Q 020348           46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYL  107 (327)
Q Consensus        46 ~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~~  107 (327)
                      +.+|+||+||+|||++||+||++|| .++||||+||++|+|+|||++||||||||||+...+
T Consensus         2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r   62 (64)
T 1irz_A            2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK   62 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999 799999999999999999999999999999997543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=93.32  E-value=0.16  Score=39.18  Aligned_cols=50  Identities=14%  Similarity=0.152  Sum_probs=40.9

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHh
Q 020348           48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL  103 (327)
Q Consensus        48 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl  103 (327)
                      ...+-.||.+=+.+|++||..+|+-+    +.|-+.|+  +=|..+++.|-++|-+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W----~~IA~~v~--~RT~~qcr~r~~~~~i   64 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDW----NKVSEHVG--SRTQDECILHFLRLPI   64 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCH----HHHHHHHS--SCCHHHHHHHHTTSCC
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCH----HHHHHHcC--CCCHHHHHHHHHHhcc
Confidence            34567899999999999999999544    46777765  7999999999988733

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.05  E-value=0.24  Score=36.70  Aligned_cols=53  Identities=19%  Similarity=0.323  Sum_probs=39.9

Q ss_pred             CCCcccCHHHHHHHHHHHHHhCCCCCCCch---hhhhhcCCCCccHHHHHHHHHHhHhh
Q 020348           49 KQRLRWTHELHERFVDAVAQLGGPDRATPK---GVLRVMGVQGLTIYHVKSHLQKYRLA  104 (327)
Q Consensus        49 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK---~IL~lM~V~GLT~~hVKSHLQKYRl~  104 (327)
                      ..+-.||.|=+++|+++|..+| .+...|.   .|-+.|  +|=|..+|+.|.++|-..
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHH
Confidence            4455899999999999999999 2221122   344444  689999999999999654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=91.91  E-value=0.28  Score=36.36  Aligned_cols=52  Identities=27%  Similarity=0.392  Sum_probs=41.1

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhhc
Q 020348           48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK  105 (327)
Q Consensus        48 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k  105 (327)
                      ...+-.||.|-++.|+++|.++|-    .=+.|-+.  ++|=|-.+|+.|.++|-..+
T Consensus         6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~--~~~Rt~~q~k~r~~~~l~~~   57 (72)
T 2cu7_A            6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKL--IGSRTVLQVKSYARQYFKNK   57 (72)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHH--HSSSCHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHH--cCCCCHHHHHHHHHHHHHHH
Confidence            345668999999999999999994    22456565  47899999999999995543

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=90.68  E-value=0.44  Score=34.21  Aligned_cols=50  Identities=26%  Similarity=0.272  Sum_probs=40.2

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHHhHh
Q 020348           48 SKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL  103 (327)
Q Consensus        48 ~KpRLrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl  103 (327)
                      .-.|-.||+|-.+++++||..+| +-+    +.|-+.|  +|=|-.+++.|-++|-+
T Consensus         5 ~~~~~~WT~eED~~L~~~v~~~G~~~W----~~Ia~~~--~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            5 SSGDPSWTAQEEMALLEAVMDCGFGNW----QDVANQM--CTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHTCTTCH----HHHHHHH--TTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCcH----HHHHHHh--CCCCHHHHHHHHHHHcc
Confidence            34556799999999999999999 433    3666666  67899999999988754

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=89.30  E-value=0.37  Score=44.65  Aligned_cols=52  Identities=25%  Similarity=0.374  Sum_probs=42.8

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHh
Q 020348           46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL  103 (327)
Q Consensus        46 ~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl  103 (327)
                      ...+..-+||++=+..|++|+..+|--+    ..|-++  |++=|..+|+.|..+||.
T Consensus       128 ~~~k~s~~WTeEE~~lFleAl~kYGKDW----~~IAk~--VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          128 VIQKCNARWTTEEQLLAVQAIRKYGRDF----QAISDV--IGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHSSCH----HHHHHH--HSSCCHHHHHHHHHHTTT
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHHCcCH----HHHHHH--cCCCCHHHHHHHHHHHHH
Confidence            3457788999999999999999999432    366666  568999999999999874

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=88.16  E-value=0.6  Score=46.93  Aligned_cols=52  Identities=27%  Similarity=0.392  Sum_probs=43.0

Q ss_pred             CCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhh
Q 020348           47 ASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA  104 (327)
Q Consensus        47 ~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~  104 (327)
                      ..+..-+||.+=|..|++||.+.|--    =+.|-+.++-  -|..+|++|.++||..
T Consensus       376 ~~~~~~~WT~eE~~~f~~al~~yGkd----w~~IA~~VgT--KT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          376 IQKCNARWTTEEQLLAVQAIRKYGRD----FQAISDVIGN--KSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHHTTC----HHHHHHHHSS--CCHHHHHHHHHHTTTT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHCcC----HHHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence            34677899999999999999999943    3477777665  6999999999999764

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=87.35  E-value=1.9  Score=31.44  Aligned_cols=54  Identities=17%  Similarity=0.235  Sum_probs=43.9

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHHhHh
Q 020348           46 LASKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL  103 (327)
Q Consensus        46 ~~~KpRLrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl  103 (327)
                      ..++.|-.||+|--+..+++|.++| |-+    +.|.+.|+..|=|-.+++.+-..|--
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W----~~Ia~~~~~~~Rt~~qcr~Rw~~~l~   59 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEGNW----SKILLHYKFNNRTSVMLKDRWRTMKK   59 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSSCH----HHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCcH----HHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence            3567888999999999999999999 444    47888887558899999988777644

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=86.29  E-value=1.2  Score=33.78  Aligned_cols=47  Identities=15%  Similarity=0.332  Sum_probs=37.3

Q ss_pred             cccCHHHHHHHHHHHHHhCCCCCCCchh---hhhhcCCCCccHHHHHHHHHHhHhh
Q 020348           52 LRWTHELHERFVDAVAQLGGPDRATPKG---VLRVMGVQGLTIYHVKSHLQKYRLA  104 (327)
Q Consensus        52 LrWT~ELH~rFV~AV~qLGG~dkAtPK~---IL~lM~V~GLT~~hVKSHLQKYRl~  104 (327)
                      -.||.|=+.+|+.|+..++   .-||.+   |-+.|   |=|..+|+.|-+++.-.
T Consensus         9 ~~WT~eE~k~fe~al~~~p---~~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            9 PEWTEEDLSQLTRSMVKFP---GGTPGRWEKIAHEL---GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCHHHHHHHHHHHHHSC---TTCTTHHHHHHHHH---TSCHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHCC---CCCCcHHHHHHHHh---CCCHHHHHHHHHHHHHh
Confidence            3699999999999999998   335665   44555   68999999998887544

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=83.85  E-value=2.2  Score=30.39  Aligned_cols=48  Identities=21%  Similarity=0.282  Sum_probs=37.6

Q ss_pred             CcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHHhHh
Q 020348           51 RLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL  103 (327)
Q Consensus        51 RLrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl  103 (327)
                      +-.||++-.+++++||.++| +-+.    .|-+.|+. |=|..+++.|-++|-+
T Consensus         9 ~~~WT~eED~~L~~~v~~~G~~~W~----~IA~~~~~-~Rt~~qcr~r~~~~~~   57 (58)
T 2elk_A            9 DENWGADEELLLIDACETLGLGNWA----DIADYVGN-ARTKEECRDHYLKTYI   57 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTTTCHH----HHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHH----HHHHHHCC-CCCHHHHHHHHHHHcc
Confidence            44699999999999999999 4443    56666542 6899999999888754

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=82.59  E-value=5.5  Score=30.28  Aligned_cols=49  Identities=12%  Similarity=0.098  Sum_probs=38.6

Q ss_pred             CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcC-CCCccHHHHHHHHHHhH
Q 020348           51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMG-VQGLTIYHVKSHLQKYR  102 (327)
Q Consensus        51 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~-V~GLT~~hVKSHLQKYR  102 (327)
                      +-.||.+=...|++||..+|   +-+|.+--++-. |+|=|-.+|+.|.+.+.
T Consensus        18 ~~~WT~eEd~~L~~al~~~g---~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~   67 (73)
T 2cqr_A           18 EEPWTQNQQKLLELALQQYP---RGSSDCWDKIARCVPSKSKEDCIARYKLLV   67 (73)
T ss_dssp             SCCCCHHHHHHHHHHHHHSC---SSSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC---CCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            34699999999999999998   236766544433 57999999999988764

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=81.11  E-value=2.6  Score=33.40  Aligned_cols=57  Identities=23%  Similarity=0.260  Sum_probs=37.3

Q ss_pred             CCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhh---hc-C-----------C--CCccHHHHHHHHHHhHhhccC
Q 020348           49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLR---VM-G-----------V--QGLTIYHVKSHLQKYRLAKYL  107 (327)
Q Consensus        49 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~---lM-~-----------V--~GLT~~hVKSHLQKYRl~k~~  107 (327)
                      +..-+|.++|-..|++|+..+--....+  -+|.   .| |           .  .-=|+.+|.||||.-|..+.+
T Consensus         4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k--~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~   77 (82)
T 2hzd_A            4 DAEGVWSPDIEQSFQEALSIYPPCGRRK--IILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSR   77 (82)
T ss_dssp             GGSCCSCHHHHHHHHHHHHHSCSSSCCC--CCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTT
T ss_pred             CcCCcCCHHHHHHHHHHHHHcCCCCccc--eeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhh
Confidence            4456899999999999998875222332  2231   11 1           1  234777899999998776543

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=80.99  E-value=2.4  Score=31.11  Aligned_cols=49  Identities=18%  Similarity=0.243  Sum_probs=37.6

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHH
Q 020348           48 SKQRLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQK  100 (327)
Q Consensus        48 ~KpRLrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQK  100 (327)
                      .+.|-.||+|--++.+++|.++| |-+    +.|.+.+++.|=|-.+++-+-..
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W----~~Ia~~~~~~~Rt~~qcr~Rw~n   57 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNW----AAISKNYPFVNRTAVMIKDRWRT   57 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCH----HHHHHHSCCSSCCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCch----HHHHhhcCCCCCCHHHHHHHHHH
Confidence            34566899999999999999999 333    37888888888888888865433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	327
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	1e-23

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.0 bits (223), Expect = 1e-23
 Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 45  SLASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLA 104
           +   K R+ WTHELH +F+ AV  LG  +RA PK +L +M V  LT  +V SHLQK+R+A
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 105 K 105
            
Sbjct: 60  L 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	327
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.93
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	95.14
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	90.64
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	86.27
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	83.03
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	80.97

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=1.5e-26  Score=174.07  Aligned_cols=60  Identities=50%  Similarity=0.766  Sum_probs=56.7

Q ss_pred             CCCCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhhcc
Q 020348           46 LASKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKY  106 (327)
Q Consensus        46 ~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k~  106 (327)
                      ..+|+|++||+|||++||+||++||+ ++|+||.|+++|+|+|||+.||+|||||||+...
T Consensus         2 ~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~   61 (64)
T d1irza_           2 AQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVALK   61 (64)
T ss_dssp             CCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999985 8999999999999999999999999999999754

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.02  Score=39.92  Aligned_cols=49  Identities=27%  Similarity=0.410  Sum_probs=39.5

Q ss_pred             CcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhHhhc
Q 020348           51 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAK  105 (327)
Q Consensus        51 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~k  105 (327)
                      ..+||+|=+..|++||..+|.-+    ..|-+.|  ++=|..+|++|.++|....
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W----~~Ia~~~--~~Rt~~q~k~ry~~~~~~~   50 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRW----TKISKLI--GSRTVLQVKSYARQYFKNK   50 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCH----HHHHHHH--SSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcchH----HHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence            36899999999999999999533    3565655  5789999999999986543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.64  E-value=0.24  Score=32.95  Aligned_cols=43  Identities=28%  Similarity=0.372  Sum_probs=35.4

Q ss_pred             ccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHHh
Q 020348           53 RWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY  101 (327)
Q Consensus        53 rWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY  101 (327)
                      .||.+-+.+|++||..+| |-    =+.|-+.|+  +=|..+++.|-++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~n----W~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGN----WQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTC----HHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCcc----HHHHHHHcC--CCCHHHHHHHHHHh
Confidence            399999999999999998 22    236666665  67999999999887

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.27  E-value=1.1  Score=31.04  Aligned_cols=46  Identities=11%  Similarity=0.036  Sum_probs=36.3

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHH
Q 020348           48 SKQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQ   99 (327)
Q Consensus        48 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQ   99 (327)
                      ++..-.||++=+..|++||.+.|.-+.    .|-++  ++|=|..+|+.|-.
T Consensus        14 ~~~~~~WT~eE~~~f~~~~~~~G~~w~----~Ia~~--~~~rt~~q~~~~yy   59 (68)
T d1xc5a1          14 RQVMNMWSEQEKETFREKFMQHPKNFG----LIASF--LERKTVAECVLYYY   59 (68)
T ss_dssp             TTTTTCCCTTTHHHHHHHHHHTTSCSS----SHHHH--TTTSCHHHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHHCCcHH----HHHHH--cCCCCHHHHHHHHH
Confidence            445567999999999999999995443    46555  57899999999853

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.03  E-value=0.74  Score=31.73  Aligned_cols=48  Identities=27%  Similarity=0.413  Sum_probs=38.3

Q ss_pred             CCCcccCHHHHHHHHHHHHHhCCCCCCCchhhhhhcCCCCccHHHHHHHHHHhH
Q 020348           49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYR  102 (327)
Q Consensus        49 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR  102 (327)
                      |.+-+||++=...|.+++..+|.-    =..|-+.|  +|=|..+|+.|-.+|+
T Consensus         3 k~~~~WT~eE~~~f~~~~~~~G~~----w~~Ia~~~--~~kt~~q~~~~y~~~~   50 (65)
T d2iw5b1           3 KCNARWTTEEQLLAVQAIRKYGRD----FQAISDVI--GNKSVVQVKNFFVNYR   50 (65)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSSC----HHHHHHHH--SSCCHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCch----HHHHHHHc--CCCCHHHHHHHHHHHH
Confidence            455679999999999999999942    23555554  6899999999988774

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.97  E-value=1  Score=29.77  Aligned_cols=45  Identities=27%  Similarity=0.305  Sum_probs=36.0

Q ss_pred             CcccCHHHHHHHHHHHHHhC-CCCCCCchhhhhhcCCCCccHHHHHHHHHHh
Q 020348           51 RLRWTHELHERFVDAVAQLG-GPDRATPKGVLRVMGVQGLTIYHVKSHLQKY  101 (327)
Q Consensus        51 RLrWT~ELH~rFV~AV~qLG-G~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY  101 (327)
                      |-+||++=.++.+++|.++| |-.    +.|-+.|  +|=|-.+++.|-++|
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W----~~Ia~~~--~~Rt~~qcr~Rw~~~   46 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDW----KVIANYL--PNRTDVQCQHRWQKV   46 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCH----HHHHHTS--TTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCH----HHHHHHH--CCCCHHHHHHHHHhh
Confidence            45799999999999999999 323    3666666  588999999887776