Citrus Sinensis ID: 020379

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
MPSAISPPWQEKASEFFSSSGSKLREAGQSVGEVAKDAKGNAADVAERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLAGE
ccccccccHHHHccccccccccccccccccccEEEEccccccEEccccccccHHHHHHHccccccHHHHHHHHHHHHcccHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEccccccccccccHHHHHHHHHHHcccccEEccccccccccccccc
ccccccHHHHHccHcHcccccccccccccccccccccccccccccHHccccccccHHHHHccccccccccccHHHHHHHHccEEcccccccHHHHccccEEHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHccccccccccHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHcccccHccccccHHHHHHHHHHHHHHccccEEEHHHHHHHHcHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHEEEEcccccccccccHHHHHHHHHHHHHHHEEEEHcccccccHHHcccc
mpsaisppwqekaSEFFSSSGSKLREAGQSVGEVAKDAKGNAADVAERVGSAVKSRWAllqepstkHAVQERLISAAAITGMFLrrgfsetkdkvAVGKIKVEEAAKKTAQKSKTILTDIERWQkgvastdvfgvpiEVTVqrqqygkpvphiLVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMynqdpnaslpegvnpfDVAALAKYYLaslpeplttfelYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVImwqkerkpefyRQYWNhasrsssknmepatphgewdmlage
mpsaisppwqekASEFFSSSGSKLREAGQSVGEVAKDAKGNAADVAERVGSAVKSRWALlqepstkhavQERLISAAAITGMFlrrgfsetkdkvavgkikveeaakktaqksktiltdierwqkgvastdvfgVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHasrsssknmepatphgewdmlage
MPSAISPPWQEKASEFFSSSGSKLREAGQSVGEVAKDAKGNAADVAERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLAGE
******************************************************SRWALLQ****KHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVE**********KTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWN*************************
**************************************************SAVKSRWA**Q***********************************************************************FGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKER***********ASRSSSKNMEPATPHGEWDMLAG*
*******************************GEVAKDAKGNAADVAERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHA**************GEWDMLAGE
******************************************************************HAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLA**
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MPSAISPPWQEKASEFFSSSGSKLREAGQSVGEVAKDAKGNAADVAERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEFYRQYWNHASRSSSKNMEPATPHGEWDMLAGE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query327 2.2.26 [Sep-21-2011]
Q3E875376 Uncharacterized Rho GTPas yes no 0.990 0.861 0.738 1e-141
Q9VTU3476 Rho GTPase-activating pro yes no 0.746 0.512 0.245 5e-16
P973931501 Rho GTPase-activating pro yes no 0.480 0.104 0.301 6e-15
Q54FG5 873 Rho GTPase-activating pro yes no 0.495 0.185 0.292 1e-14
Q130171502 Rho GTPase-activating pro yes no 0.480 0.104 0.295 1e-14
P811281513 Rho GTPase-activating pro yes no 0.495 0.107 0.276 3e-14
P835091500 Rho GTPase-activating pro no no 0.495 0.108 0.270 7e-14
Q91YM21499 Rho GTPase-activating pro no no 0.495 0.108 0.270 7e-14
Q9NRY41499 Rho GTPase-activating pro no no 0.495 0.108 0.270 8e-14
Q5U2Z7 748 Rho GTPase-activating pro no no 0.541 0.236 0.273 1e-13
>sp|Q3E875|RGAP1_ARATH Uncharacterized Rho GTPase-activating protein At5g61530 OS=Arabidopsis thaliana GN=At5g61530 PE=1 SV=2 Back     alignment and function desciption
 Score =  501 bits (1290), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/333 (73%), Positives = 284/333 (85%), Gaps = 9/333 (2%)

Query: 1   MPSAISPPWQEKASEFFSSSGSKLREAGQS----VGEVAKDAKGNAADVAERVGSAVKSR 56
           MPS IS  WQE+ S FFSSSG+KLREAGQ+    VGEVAKDAK N ADVAERVGS  KSR
Sbjct: 1   MPSLISQQWQERTSGFFSSSGTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSR 60

Query: 57  WALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTI 116
           WA+LQ+P+T+HAVQE LI+AAA TG F+R+G +ETK+KV+VGKIKVEEAAKKTAQKSKTI
Sbjct: 61  WAILQQPATRHAVQEHLITAAATTGTFVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTI 120

Query: 117 LTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEG 176
           LTDIERWQKGVAS+DVFGV IE+TVQRQ+  +P+P ILVKCADYL+L+GLNS  LFKAEG
Sbjct: 121 LTDIERWQKGVASSDVFGVAIEITVQRQESSRPIPLILVKCADYLILTGLNSPNLFKAEG 180

Query: 177 DKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSI 236
           D+K+IQ LVS YNQDP AS+PEGVNP DVAAL KYYLASLP PLTTFELY+EIK ARSSI
Sbjct: 181 DRKLIQQLVSAYNQDPRASIPEGVNPVDVAALLKYYLASLPTPLTTFELYNEIKDARSSI 240

Query: 237 HAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 296
           H MR +L+KLSNVN+ TLE++TALLLRVSQKSLLNKMD+ SLAMEMAPVIMW+++ +PE 
Sbjct: 241 HRMRQSLQKLSNVNYNTLEFITALLLRVSQKSLLNKMDSHSLAMEMAPVIMWREDNRPES 300

Query: 297 YRQYWNHASRS--SSKNMEPATPHGEWDMLAGE 327
           YR+YW   SRS   S + E ATP   WD+L+ E
Sbjct: 301 YREYWRRPSRSPKKSNDFETATP---WDLLSDE 330

Arabidopsis thaliana (taxid: 3702)
>sp|Q9VTU3|RG68F_DROME Rho GTPase-activating protein 68F OS=Drosophila melanogaster GN=RhoGAP68F PE=1 SV=1 Back     alignment and function description
>sp|P97393|RHG05_MOUSE Rho GTPase-activating protein 5 OS=Mus musculus GN=Arhgap5 PE=2 SV=2 Back     alignment and function description
>sp|Q54FG5|GACJJ_DICDI Rho GTPase-activating protein gacJJ OS=Dictyostelium discoideum GN=gacJJ PE=3 SV=1 Back     alignment and function description
>sp|Q13017|RHG05_HUMAN Rho GTPase-activating protein 5 OS=Homo sapiens GN=ARHGAP5 PE=1 SV=2 Back     alignment and function description
>sp|P81128|RHG35_RAT Rho GTPase-activating protein 35 OS=Rattus norvegicus GN=Arhgap35 PE=1 SV=2 Back     alignment and function description
>sp|P83509|RHG35_CANFA Rho GTPase-activating protein 35 OS=Canis familiaris GN=ARHGAP35 PE=2 SV=1 Back     alignment and function description
>sp|Q91YM2|RHG35_MOUSE Rho GTPase-activating protein 35 OS=Mus musculus GN=Arhgap35 PE=1 SV=3 Back     alignment and function description
>sp|Q9NRY4|RHG35_HUMAN Rho GTPase-activating protein 35 OS=Homo sapiens GN=ARHGAP35 PE=1 SV=3 Back     alignment and function description
>sp|Q5U2Z7|RHG24_RAT Rho GTPase-activating protein 24 OS=Rattus norvegicus GN=Arhgap24 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query327
224129900377 predicted protein [Populus trichocarpa] 0.993 0.862 0.806 1e-153
363807312379 uncharacterized protein LOC100810167 [Gl 0.996 0.860 0.742 1e-140
356544212379 PREDICTED: uncharacterized Rho GTPase-ac 1.0 0.862 0.741 1e-140
18424478376 uncharacterized Rho GTPase-activating pr 0.990 0.861 0.738 1e-139
297793703376 small G protein family protein [Arabidop 0.990 0.861 0.735 1e-139
21553593376 unknown [Arabidopsis thaliana] 0.990 0.861 0.735 1e-139
255539855369 Rho GTPase activator, putative [Ricinus 0.938 0.831 0.769 1e-137
449458339383 PREDICTED: uncharacterized Rho GTPase-ac 1.0 0.853 0.750 1e-135
42573754367 uncharacterized Rho GTPase-activating pr 0.963 0.858 0.711 1e-132
334188546376 uncharacterized Rho GTPase-activating pr 0.929 0.808 0.741 1e-131
>gi|224129900|ref|XP_002328831.1| predicted protein [Populus trichocarpa] gi|222839129|gb|EEE77480.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 266/330 (80%), Positives = 293/330 (88%), Gaps = 5/330 (1%)

Query: 1   MPSAISPPWQEKASEFFSSSGSKLREAGQS----VGEVAKDAKGNAADVAERVGSAVKSR 56
           MPSA+SP WQEKA+ FFS+SG KL+EAGQS    VGEVAKDAKGN ADVAE+VGSAVK+R
Sbjct: 1   MPSAVSPQWQEKATGFFSTSGVKLKEAGQSAGTFVGEVAKDAKGNVADVAEKVGSAVKTR 60

Query: 57  WALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTI 116
           WA+L+EPST+HA+QERLI+AAA TGMF R+G SETKDKV VGK KVEE AKKTAQKSKTI
Sbjct: 61  WAILREPSTRHAMQERLITAAATTGMFFRKGISETKDKVTVGKTKVEEVAKKTAQKSKTI 120

Query: 117 LTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEG 176
           LTDIERWQKGVASTDVFGVPIEVTVQRQ++ K VPHILVKCADYL+LSGLNS  LFKAEG
Sbjct: 121 LTDIERWQKGVASTDVFGVPIEVTVQRQEFSKLVPHILVKCADYLILSGLNSVDLFKAEG 180

Query: 177 DKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSI 236
           DKKVIQ LVS+YNQD NASLPEG+NP DVA LAK YLASLPEPLTTFELYDEIKGARSSI
Sbjct: 181 DKKVIQQLVSLYNQDSNASLPEGLNPIDVAFLAKCYLASLPEPLTTFELYDEIKGARSSI 240

Query: 237 HAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 296
           H M+N LKKL  VN+MTLE++TALLLRVSQKSLLNKMDAR++A EMAPVIMWQKERKPE 
Sbjct: 241 HVMKNILKKLPAVNYMTLEFITALLLRVSQKSLLNKMDARAIATEMAPVIMWQKERKPET 300

Query: 297 YRQYWNHASRS-SSKNMEPATPHGEWDMLA 325
           YR YWN+ SRS S KNM+PA  +  WDML+
Sbjct: 301 YRSYWNNLSRSPSKKNMDPAPTYSAWDMLS 330

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|363807312|ref|NP_001242623.1| uncharacterized protein LOC100810167 [Glycine max] gi|255635720|gb|ACU18209.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356544212|ref|XP_003540548.1| PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530-like [Glycine max] Back     alignment and taxonomy information
>gi|18424478|ref|NP_568935.1| uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana] gi|172046652|sp|Q3E875.2|RGAP1_ARATH RecName: Full=Uncharacterized Rho GTPase-activating protein At5g61530 gi|15028203|gb|AAK76598.1| unknown protein [Arabidopsis thaliana] gi|22136944|gb|AAM91816.1| unknown protein [Arabidopsis thaliana] gi|332010097|gb|AED97480.1| uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297793703|ref|XP_002864736.1| small G protein family protein [Arabidopsis lyrata subsp. lyrata] gi|297310571|gb|EFH40995.1| small G protein family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|21553593|gb|AAM62686.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255539855|ref|XP_002510992.1| Rho GTPase activator, putative [Ricinus communis] gi|223550107|gb|EEF51594.1| Rho GTPase activator, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449458339|ref|XP_004146905.1| PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|42573754|ref|NP_974973.1| uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana] gi|332010098|gb|AED97481.1| uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334188546|ref|NP_001190587.1| uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana] gi|332010099|gb|AED97482.1| uncharacterized Rho GTPase-activating protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query327
TAIR|locus:2151611376 AT5G61530 "AT5G61530" [Arabido 0.990 0.861 0.738 7.8e-126
FB|FBgn0036257476 RhoGAP68F "Rho GTPase activati 0.694 0.476 0.257 2.3e-15
MGI|MGI:13326371501 Arhgap5 "Rho GTPase activating 0.599 0.130 0.307 2e-14
UNIPROTKB|D4A814312 D4A814 "Uncharacterized protei 0.483 0.506 0.290 2.3e-14
UNIPROTKB|E1BM231420 LOC539086 "Uncharacterized pro 0.605 0.139 0.296 1.3e-13
UNIPROTKB|E2RED41503 ARHGAP5 "Uncharacterized prote 0.605 0.131 0.296 1.4e-13
DICTYBASE|DDB_G0290873 873 gacJJ "RhoGAP domain-containin 0.480 0.179 0.309 1.6e-13
UNIPROTKB|Q130171502 ARHGAP5 "Rho GTPase-activating 0.605 0.131 0.296 1.9e-13
UNIPROTKB|A4GT58439 ARHGAP1 "Cdc42 GTPase-activati 0.483 0.359 0.278 4e-13
UNIPROTKB|F1NG561142 ARHGAP5 "Uncharacterized prote 0.608 0.174 0.288 4e-13
TAIR|locus:2151611 AT5G61530 "AT5G61530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
 Identities = 246/333 (73%), Positives = 284/333 (85%)

Query:     1 MPSAISPPWQEKASEFFSSSGSKLREAGQS----VGEVAKDAKGNAADVAERVGSAVKSR 56
             MPS IS  WQE+ S FFSSSG+KLREAGQ+    VGEVAKDAK N ADVAERVGS  KSR
Sbjct:     1 MPSLISQQWQERTSGFFSSSGTKLREAGQTAGSFVGEVAKDAKVNVADVAERVGSLFKSR 60

Query:    57 WALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKVEEAAKKTAQKSKTI 116
             WA+LQ+P+T+HAVQE LI+AAA TG F+R+G +ETK+KV+VGKIKVEEAAKKTAQKSKTI
Sbjct:    61 WAILQQPATRHAVQEHLITAAATTGTFVRKGITETKEKVSVGKIKVEEAAKKTAQKSKTI 120

Query:   117 LTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEG 176
             LTDIERWQKGVAS+DVFGV IE+TVQRQ+  +P+P ILVKCADYL+L+GLNS  LFKAEG
Sbjct:   121 LTDIERWQKGVASSDVFGVAIEITVQRQESSRPIPLILVKCADYLILTGLNSPNLFKAEG 180

Query:   177 DKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSSI 236
             D+K+IQ LVS YNQDP AS+PEGVNP DVAAL KYYLASLP PLTTFELY+EIK ARSSI
Sbjct:   181 DRKLIQQLVSAYNQDPRASIPEGVNPVDVAALLKYYLASLPTPLTTFELYNEIKDARSSI 240

Query:   237 HAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 296
             H MR +L+KLSNVN+ TLE++TALLLRVSQKSLLNKMD+ SLAMEMAPVIMW+++ +PE 
Sbjct:   241 HRMRQSLQKLSNVNYNTLEFITALLLRVSQKSLLNKMDSHSLAMEMAPVIMWREDNRPES 300

Query:   297 YRQYWNHASRSSSKN--MEPATPHGEWDMLAGE 327
             YR+YW   SRS  K+   E ATP   WD+L+ E
Sbjct:   301 YREYWRRPSRSPKKSNDFETATP---WDLLSDE 330
GO:0005100 "Rho GTPase activator activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0007165 "signal transduction" evidence=IEA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0016192 "vesicle-mediated transport" evidence=RCA
GO:0048193 "Golgi vesicle transport" evidence=RCA
FB|FBgn0036257 RhoGAP68F "Rho GTPase activating protein at 68F" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1332637 Arhgap5 "Rho GTPase activating protein 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|D4A814 D4A814 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BM23 LOC539086 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RED4 ARHGAP5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290873 gacJJ "RhoGAP domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q13017 ARHGAP5 "Rho GTPase-activating protein 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A4GT58 ARHGAP1 "Cdc42 GTPase-activating protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NG56 ARHGAP5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q3E875RGAP1_ARATHNo assigned EC number0.73870.99080.8617yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query327
pfam00620152 pfam00620, RhoGAP, RhoGAP domain 3e-39
cd00159169 cd00159, RhoGAP, RhoGAP: GTPase-activator protein 7e-37
smart00324174 smart00324, RhoGAP, GTPase-activator protein for R 2e-33
cd04404195 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA 3e-24
cd04398192 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas 5e-20
cd04386203 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP 9e-20
cd04373185 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase- 6e-19
cd04381182 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP 1e-17
cd04395196 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP 6e-16
cd04406186 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho 5e-15
cd04390199 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24 1e-14
cd04378203 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho 3e-14
cd04377186 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA 5e-14
cd04408200 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase- 6e-14
cd04385184 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase- 7e-14
cd04375220 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase- 9e-14
cd04394202 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA 1e-13
cd04376206 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G 2e-13
cd04393189 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP 5e-13
cd04396225 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: Rho 2e-12
cd04407186 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho 3e-12
cd04379207 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase- 8e-12
cd04400190 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas 8e-12
cd04402192 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP 1e-11
cd04384195 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas 2e-11
cd04389187 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase- 2e-11
cd04409211 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas 3e-11
cd04372194 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA 4e-11
cd04387196 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac 1e-10
cd04403187 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_ 2e-10
cd04374203 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activato 2e-10
cd04383188 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas 7e-09
cd04392208 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP 4e-08
cd04397213 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPas 4e-07
cd04391216 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP 4e-07
cd04380220 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPas 5e-05
cd04382193 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA 5e-05
cd04399212 cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPas 1e-04
cd04388200 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-ac 4e-04
>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain Back     alignment and domain information 
 Score =  135 bits (342), Expect = 3e-39
 Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 7/147 (4%)

Query: 151 PHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPN-ASLPEGVNPFDVAALA 209
           P I+ KC ++L   GL+++ +F+  G    I+ L   ++   +     E  +   VA+L 
Sbjct: 1   PLIVEKCVEFLEKRGLDTEGIFRVSGSASRIKELREAFDSGEDVDLDLEEEDVHVVASLL 60

Query: 210 KYYLASLPEPLTTFELYDEIKGARSS------IHAMRNTLKKLSNVNFMTLEYVTALLLR 263
           K +L  LPEPL TFELY+E   A  S      + A+R  L+KL   N  TL Y+ A L R
Sbjct: 61  KLFLRELPEPLLTFELYEEFIEAAKSEDEEERVEALRELLRKLPPANRDTLRYLLAHLNR 120

Query: 264 VSQKSLLNKMDARSLAMEMAPVIMWQK 290
           V+Q S +NKM+A +LA+   P ++   
Sbjct: 121 VAQNSEVNKMNAHNLAIVFGPTLLRPP 147

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. Length = 152
>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases Back     alignment and domain information
>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases Back     alignment and domain information
>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) Back     alignment and domain information
>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins Back     alignment and domain information
>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins Back     alignment and domain information
>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins Back     alignment and domain information
>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin Back     alignment and domain information
>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins Back     alignment and domain information
>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA Back     alignment and domain information
>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain Back     alignment and domain information
>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins Back     alignment and domain information
>gnl|CDD|239873 cd04408, RhoGAP_GMIP, RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) Back     alignment and domain information
>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs Back     alignment and domain information
>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins Back     alignment and domain information
>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins Back     alignment and domain information
>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins Back     alignment and domain information
>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins Back     alignment and domain information
>gnl|CDD|239861 cd04396, RhoGAP_fSAC7_BAG7, RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins Back     alignment and domain information
>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB Back     alignment and domain information
>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins Back     alignment and domain information
>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins Back     alignment and domain information
>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins Back     alignment and domain information
>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA Back     alignment and domain information
>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain Back     alignment and domain information
>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins Back     alignment and domain information
>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins Back     alignment and domain information
>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains Back     alignment and domain information
>gnl|CDD|239839 cd04374, RhoGAP_Graf, RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins Back     alignment and domain information
>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs Back     alignment and domain information
>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins Back     alignment and domain information
>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins Back     alignment and domain information
>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins Back     alignment and domain information
>gnl|CDD|239845 cd04380, RhoGAP_OCRL1, RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins Back     alignment and domain information
>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins Back     alignment and domain information
>gnl|CDD|239864 cd04399, RhoGAP_fRGD2, RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins Back     alignment and domain information
>gnl|CDD|239853 cd04388, RhoGAP_p85, RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 327
KOG4406467 consensus CDC42 Rho GTPase-activating protein [Sig 100.0
cd04383188 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato 100.0
cd04390199 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas 100.0
cd04408200 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator 100.0
cd04372194 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase- 100.0
cd04407186 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas 100.0
cd04409211 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato 100.0
cd04403187 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G 100.0
cd04406186 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas 100.0
cd04378203 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas 100.0
cd04384195 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato 100.0
cd04387196 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr 100.0
cd04375220 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator 100.0
cd04379207 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator 100.0
cd04393189 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac 100.0
cd04391216 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac 100.0
cd04381182 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa 100.0
cd04373185 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator 100.0
cd04386203 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa 100.0
cd04404195 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase- 100.0
cd04388200 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr 100.0
cd04396225 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas 100.0
cd04397213 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato 100.0
cd04402192 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac 100.0
cd04389187 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator 100.0
cd04394202 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase- 100.0
cd04377186 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase- 100.0
cd04395196 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac 100.0
cd04398192 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato 100.0
cd04400190 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato 100.0
cd04376206 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti 100.0
cd04382193 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase- 100.0
cd04399212 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato 100.0
cd04392208 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac 100.0
cd04385184 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator 100.0
cd04374203 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein 100.0
cd04380220 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato 100.0
smart00324174 RhoGAP GTPase-activator protein for Rho-like GTPas 100.0
KOG2200 674 consensus Tumour suppressor protein p122-RhoGAP/DL 99.98
cd00159169 RhoGAP RhoGAP: GTPase-activator protein (GAP) for 99.98
PF00620151 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members 99.97
KOG4407 1973 consensus Predicted Rho GTPase-activating protein 99.97
KOG42691112 consensus Rac GTPase-activating protein BCR/ABR [S 99.97
KOG1450650 consensus Predicted Rho GTPase-activating protein 99.97
KOG4270 577 consensus GTPase-activator protein [Signal transdu 99.97
KOG1453 918 consensus Chimaerin and related Rho GTPase activat 99.96
KOG3564604 consensus GTPase-activating protein [General funct 99.96
KOG2710 412 consensus Rho GTPase-activating protein [Signal tr 99.95
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.93
KOG1451 812 consensus Oligophrenin-1 and related Rho GTPase-ac 99.92
KOG1452442 consensus Predicted Rho GTPase-activating protein 99.86
KOG42711100 consensus Rho-GTPase activating protein [Signal tr 99.78
cd04401198 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato 99.77
KOG4724 741 consensus Predicted Rho GTPase-activating protein 99.71
cd04405235 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas 99.67
KOG4370 514 consensus Ral-GTPase effector RLIP76 [Signal trans 99.34
KOG3565 640 consensus Cdc42-interacting protein CIP4 [Cytoskel 99.27
PF08101 420 DUF1708: Domain of unknown function (DUF1708); Int 98.85
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 98.35
KOG4724 741 consensus Predicted Rho GTPase-activating protein 98.18
KOG1453 918 consensus Chimaerin and related Rho GTPase activat 96.57
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 96.13
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 95.78
KOG4271 1100 consensus Rho-GTPase activating protein [Signal tr 94.43
KOG1449 670 consensus Predicted Rho GTPase-activating protein 92.85
KOG1449 670 consensus Predicted Rho GTPase-activating protein 91.66
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=7.1e-49  Score=367.79  Aligned_cols=288  Identities=23%  Similarity=0.353  Sum_probs=245.8

Q ss_pred             hhhhhhchhHhhHHHHhhhHHhh-hccchhHHHHHHHhcCcccccchhhhhhHHhhhhccccccccccccchhhcCccch
Q 020379           24 LREAGQSVGEVAKDAKGNAADVA-ERVGSAVKSRWALLQEPSTKHAVQERLISAAAITGMFLRRGFSETKDKVAVGKIKV  102 (327)
Q Consensus        24 ~~~~~~~y~~~~r~~kkNlk~l~-vhp~~~~Ks~w~~~~~~~~~~~~~~~~iS~kf~~k~~~~~~~s~l~~~v~~~~~~~  102 (327)
                      +.+.-++|.++||+||||+|+|| |||+||+|..|.+++          ++||.||++|+.|.++++||.++++++++.+
T Consensus       148 l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~k----------plIS~KF~rKi~Y~n~lseL~~~l~l~rL~l  217 (467)
T KOG4406|consen  148 LQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFK----------PLISLKFTRKIIYFNSLSELFEALKLNRLKL  217 (467)
T ss_pred             HHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHh----------hhcchhhhceeEEeehHHHHHHhhhhhhhcC
Confidence            45566779999999999999999 999999999999999          9999999999999999999999999999999


Q ss_pred             h-HHHHHhhhcchh-----hHhhHHHhhcCCCCCCcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcC-CCCcCeeecc
Q 020379          103 E-EAAKKTAQKSKT-----ILTDIERWQKGVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSG-LNSQFLFKAE  175 (327)
Q Consensus       103 ~-e~~~~~~~k~~~-----~~~~~~~~~~~~~~~~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~g-l~~eGIFR~s  175 (327)
                      + ++.....+-...     -..+.....+...+++.||++|+.+......+..||.+|..|+++|..+| +++||+||+|
T Consensus       218 P~~v~~~D~~~~s~~~~~a~~p~~~~~pr~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS  297 (467)
T KOG4406|consen  218 PPEVLKHDDKLLSKAKTPAPPPEKMTPPRPPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRS  297 (467)
T ss_pred             ChhhhhhhhcccccccCCCCCcccCCCCCCCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccc
Confidence            5 665543322111     11112223445567889999999998877668899999999999999999 9999999999


Q ss_pred             CCHHHHHHHHHHHcCCCCCCCCCCCChhhhHHHHHHHHhhCCCCCCChhhHHHHhhH-----HHHHHHHHHHHhh-cchh
Q 020379          176 GDKKVIQHLVSMYNQDPNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKK-LSNV  249 (327)
Q Consensus       176 g~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~lLK~fLr~LPePLl~~~ly~~~~~~-----~~~i~~l~~ll~~-LP~~  249 (327)
                      ++.+.+.++.+.+|+|..+++....|+|..|+++|.|||+||+||+++++|+.+.+.     .++...+.++++. ||++
T Consensus       298 ~s~~~i~~~q~~~n~G~pVdle~~~~~h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~~~~~~s~s~~qli~~~lp~~  377 (467)
T KOG4406|consen  298 ASRSPIREVQELYNTGEPVDLEVYKDLHAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNVDKSLRSSSTDQLIRPTLPEE  377 (467)
T ss_pred             cCccchHHHHHHhcCCCcccHHHhccchhhHHHHHHHHhcCCcccchhhhhhhhhccccchHHhhhhHHHHHhhccCChh
Confidence            999999999999999999998766679999999999999999999999999998754     4577889999987 9999


Q ss_pred             hHHHHHHHHHHHHHHHhccccCCCChhhhHHHhhhcccCCCCCCHH-----HHHHHHHHHHhcccccCCCCCCCCCCccc
Q 020379          250 NFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPE-----FYRQYWNHASRSSSKNMEPATPHGEWDML  324 (327)
Q Consensus       250 n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf~P~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~w~~~  324 (327)
                      |+.++++++.||.+|++|+..|+||+.|||+||||+|+|+......     .++.+++.++.+..+..   .+-.+||.+
T Consensus       378 ny~L~r~i~sfL~~Is~~~~~N~M~~sNLa~vfGpnl~w~~~~s~tl~q~npin~F~~~li~~~~~~f---~~~~~~~~~  454 (467)
T KOG4406|consen  378 NYSLLRYISSFLVQISDNSKENKMTASNLAVVFGPNLLWAQDESLTLKQINPINKFTKFLIEHYKKLF---TTPENADKF  454 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHhhhccccceeeecccccccccccccHHHhccHHHHHHHHHHhhhhcc---CCCCCcccc
Confidence            9999999999999999999999999999999999999999976633     45667778887665533   344555543

>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs Back     alignment and domain information
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain Back     alignment and domain information
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) Back     alignment and domain information
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins Back     alignment and domain information
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB Back     alignment and domain information
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains Back     alignment and domain information
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA Back     alignment and domain information
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA Back     alignment and domain information
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins Back     alignment and domain information
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins Back     alignment and domain information
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins Back     alignment and domain information
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins Back     alignment and domain information
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins Back     alignment and domain information
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin Back     alignment and domain information
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins Back     alignment and domain information
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins Back     alignment and domain information
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) Back     alignment and domain information
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase) Back     alignment and domain information
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins Back     alignment and domain information
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins Back     alignment and domain information
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins Back     alignment and domain information
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain Back     alignment and domain information
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins Back     alignment and domain information
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins Back     alignment and domain information
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins Back     alignment and domain information
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins Back     alignment and domain information
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins Back     alignment and domain information
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins Back     alignment and domain information
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins Back     alignment and domain information
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins Back     alignment and domain information
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins Back     alignment and domain information
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs Back     alignment and domain information
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins Back     alignment and domain information
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins Back     alignment and domain information
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases Back     alignment and domain information
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms] Back     alignment and domain information
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases Back     alignment and domain information
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation Back     alignment and domain information
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms] Back     alignment and domain information
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG3564 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins Back     alignment and domain information
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins Back     alignment and domain information
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms] Back     alignment and domain information
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton] Back     alignment and domain information
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [] Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms] Back     alignment and domain information
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query327
2ee5_A219 Solution Structure Of The N-Teruminus Extended Rhog 2e-15
2ee4_A209 Solution Structure Of The Rhogap Domain From Human 4e-15
3fk2_A246 Crystal Structure Of The Rhogap Domain Of Human Glu 1e-14
1ow3_A242 Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With 4e-13
1tx4_A198 RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198 4e-13
1grn_B203 Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX 6e-13
1am4_A199 Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S 7e-13
2ngr_B234 Transition State Complex For Gtp Hydrolysis By Cdc4 1e-12
3kuq_A228 Crystal Structure Of The Dlc1 Rhogap Domain Length 8e-10
2ovj_A201 The Crystal Structure Of The Human Rac Gtpase Activ 9e-07
3byi_A214 Crystal Structure Of Human Rho Gtpase Activating Pr 1e-06
3cxl_A463 Crystal Structure Of Human Chimerin 1 (Chn1) Length 3e-06
3iug_A229 Crystal Structure Of The Rhogap Domain Of Rics Leng 8e-06
2osa_A202 The Rho-Gap Domain Of Human N-Chimaerin Length = 20 2e-05
3eap_A271 Crystal Structure Of The Rhogap Domain Of Arhgap11a 2e-05
3msx_B201 Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With 3e-05
1xa6_A466 Crystal Structure Of The Human Beta2-Chimaerin Leng 5e-05
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219 Back     alignment and structure 
Iteration: 1

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 19/176 (10%)
Query: 130 TDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYN 189
           ++ FG+P++  V  +   KP+P  + KC +++  +GL ++ L++  G+K    ++   ++
Sbjct: 20  SNYFGMPLQDLVTAE---KPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFD 76
Query: 190 QDPN---ASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDE------IKGARSSIHAMR 240
           QD N    S+   VN   VA   K + A LP+PL  + L+ E      I      +HA++
Sbjct: 77  QDHNINLVSMEVTVNA--VAGALKAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALK 134
Query: 241 NTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKERKPEF 296
             +KK   VN+    YV   L RVSQ+  +N M A +L++   P +M     +P+F
Sbjct: 135 EIVKKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLM-----RPDF 185
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209 Back     alignment and structure
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246 Back     alignment and structure
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242 Back     alignment and structure
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198 Back     alignment and structure
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203 Back     alignment and structure
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199 Back     alignment and structure
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234 Back     alignment and structure
>pdb|3KUQ|A Chain A, Crystal Structure Of The Dlc1 Rhogap Domain Length = 228 Back     alignment and structure
>pdb|2OVJ|A Chain A, The Crystal Structure Of The Human Rac Gtpase Activating Protein 1 (Racgap1) Mgcracgap Length = 201 Back     alignment and structure
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein 15 (arhgap15) Length = 214 Back     alignment and structure
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1) Length = 463 Back     alignment and structure
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229 Back     alignment and structure
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin Length = 202 Back     alignment and structure
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a Length = 271 Back     alignment and structure
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 201 Back     alignment and structure
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin Length = 466 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query327
1tx4_A198 P50-rhogap; complex (GTPase activation/proto-oncog 6e-39
3kuq_A228 RHO GTPase-activating protein 7; structural genomi 4e-38
1ow3_A242 RHO-GTPase-activating protein 1; complex, GTPase, 4e-38
3fk2_A246 Glucocorticoid receptor DNA-binding factor 1; stru 8e-35
3byi_A214 RHO GTPase activating protein 15; BM046, arhgap15, 2e-34
2ee4_A209 RHO GTPase activating protein 5 variant; all alpha 4e-34
2osa_A202 N-chimaerin; RHO-GAP, GTPase activation, structura 4e-33
3msx_B201 RHO GTPase-activating protein 20; protein-proten c 1e-32
1f7c_A231 Rhogap protein; GTPase activating protein, RHO GTP 6e-32
3eap_A271 RHO GTPase-activating protein 11A; GAP, structural 9e-32
3iug_A229 RHO/CDC42/RAC GTPase-activating protein RICS; stru 8e-30
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 1e-29
3cxl_A463 N-chimerin; SH2, RHO-GAP, structural genomics cons 2e-29
1pbw_A216 Rhogap domain, phosphatidylinositol 3-kinase; phos 8e-29
2ovj_A201 Mgcracgap, RAC GTPase-activating protein 1; signal 1e-26
2xs6_A214 Phosphatidylinositol 3-kinase regulatory subunit; 1e-23
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198 Back     alignment and structure
 Score =  135 bits (342), Expect = 6e-39
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 5/165 (3%)

Query: 132 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 191
            FGV ++   ++    +P+P +L +   YL    L ++ +F+   + +V++ +   YN  
Sbjct: 8   QFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG 67

Query: 192 PNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARSS-----IHAMRNTLKKL 246
                 +       A + K +L  LPEPL TF+LY  + G  +      + A    L+ L
Sbjct: 68  LPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTL 127

Query: 247 SNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 291
              N+  L ++TA L+++S  S  NKM   +LA+   P ++W K+
Sbjct: 128 PEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 172
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228 Back     alignment and structure
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242 Back     alignment and structure
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246 Back     alignment and structure
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214 Back     alignment and structure
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209 Back     alignment and structure
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202 Back     alignment and structure
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201 Back     alignment and structure
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231 Back     alignment and structure
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271 Back     alignment and structure
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229 Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366 Back     alignment and structure
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463 Back     alignment and structure
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216 Back     alignment and structure
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201 Back     alignment and structure
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query327
1tx4_A198 P50-rhogap; complex (GTPase activation/proto-oncog 100.0
3byi_A214 RHO GTPase activating protein 15; BM046, arhgap15, 100.0
1ow3_A242 RHO-GTPase-activating protein 1; complex, GTPase, 100.0
2osa_A202 N-chimaerin; RHO-GAP, GTPase activation, structura 100.0
2ee4_A209 RHO GTPase activating protein 5 variant; all alpha 100.0
3msx_B201 RHO GTPase-activating protein 20; protein-proten c 100.0
1pbw_A216 Rhogap domain, phosphatidylinositol 3-kinase; phos 100.0
3kuq_A228 RHO GTPase-activating protein 7; structural genomi 100.0
3iug_A229 RHO/CDC42/RAC GTPase-activating protein RICS; stru 100.0
3fk2_A246 Glucocorticoid receptor DNA-binding factor 1; stru 100.0
1f7c_A231 Rhogap protein; GTPase activating protein, RHO GTP 100.0
2ovj_A201 Mgcracgap, RAC GTPase-activating protein 1; signal 100.0
3cxl_A463 N-chimerin; SH2, RHO-GAP, structural genomics cons 100.0
2xs6_A214 Phosphatidylinositol 3-kinase regulatory subunit; 100.0
3eap_A271 RHO GTPase-activating protein 11A; GAP, structural 100.0
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 98.6
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 97.68
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Back     alignment and structure
Probab=100.00  E-value=1.4e-42  Score=307.05  Aligned_cols=182  Identities=24%  Similarity=0.416  Sum_probs=160.3

Q ss_pred             CCCCCCcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhh
Q 020379          126 GVASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDV  205 (327)
Q Consensus       126 ~~~~~~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~v  205 (327)
                      +..+.++||++|++++++++....||.+|.+|+++|+++|+++|||||++|+..++++|++.+|+|...++....|+|++
T Consensus         2 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~   81 (198)
T 1tx4_A            2 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLP   81 (198)
T ss_dssp             -CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred             CCCCCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchHH
Confidence            34577899999999998865445899999999999999999999999999999999999999999987776444689999


Q ss_pred             HHHHHHHHhhCCCCCCChhhHHHHhhH-----HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHH
Q 020379          206 AALAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAM  280 (327)
Q Consensus       206 a~lLK~fLr~LPePLl~~~ly~~~~~~-----~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAi  280 (327)
                      |++||.|||+||+||+|.++|+.|+++     .++++.++.++.+||+.|+.+|.||+.||++|+++++.||||++|||+
T Consensus        82 a~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~  161 (198)
T 1tx4_A           82 AVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAV  161 (198)
T ss_dssp             HHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHH
T ss_pred             HHHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHh
Confidence            999999999999999999999999876     357899999999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCCCCCHH-----HHHHHHHHHHhc
Q 020379          281 EMAPVIMWQKERKPE-----FYRQYWNHASRS  307 (327)
Q Consensus       281 vf~P~Ll~~~~~~~~-----~~~~~~~~~~~~  307 (327)
                      ||||+|+|+++....     ..+..++.++.+
T Consensus       162 vf~P~Ll~~~~~~~~~~~~~~~~~~v~~LI~~  193 (198)
T 1tx4_A          162 VFGPNLLWAKDAAITLKAINPINTFTKFLLDH  193 (198)
T ss_dssp             HHHHHHCCCSSHHHHHHTHHHHHHHHHHHHHT
T ss_pred             hhcccccCCCCccccHHHHHHHHHHHHHHHHh
Confidence            999999999864321     233445555554
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Back     alignment and structure
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Back     alignment and structure
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Back     alignment and structure
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Back     alignment and structure
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Back     alignment and structure
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Back     alignment and structure
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Back     alignment and structure
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Back     alignment and structure
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Back     alignment and structure
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Back     alignment and structure
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Back     alignment and structure
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Back     alignment and structure
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 327
d1tx4a_196 a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi 1e-35
d1xa6a1196 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d 2e-30
d1pbwa_184 a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu 1e-24
d1f7ca_191 a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI 1e-22
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 1e-35
 Identities = 44/165 (26%), Positives = 80/165 (48%), Gaps = 5/165 (3%)

Query: 132 VFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQD 191
            FGV ++   ++    +P+P +L +   YL    L ++ +F+   + +V++ +   YN  
Sbjct: 6   QFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMG 65

Query: 192 PNASLPEGVNPFDVAALAKYYLASLPEPLTTFELYDEIKGARS-----SIHAMRNTLKKL 246
                 +       A + K +L  LPEPL TF+LY  + G  +      + A    L+ L
Sbjct: 66  LPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTL 125

Query: 247 SNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKE 291
              N+  L ++TA L+++S  S  NKM   +LA+   P ++W K+
Sbjct: 126 PEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKD 170
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Back     information, alignment and structure
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query327
d1tx4a_196 p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96 100.0
d1xa6a1196 Beta-chimaerin, C-terminal domain {Human (Homo sap 100.0
d1pbwa_184 p85 alpha subunit RhoGAP domain {Human (Homo sapie 100.0
d1f7ca_191 Graf {Chicken (Gallus gallus) [TaxId: 9031]} 100.0
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-40  Score=288.72  Aligned_cols=166  Identities=27%  Similarity=0.479  Sum_probs=155.5

Q ss_pred             CCCCcccCCHHHHHhhhcCCCCCCHHHHHHHHHHHHcCCCCcCeeeccCCHHHHHHHHHHHcCCCCCCCCCCCChhhhHH
Q 020379          128 ASTDVFGVPIEVTVQRQQYGKPVPHILVKCADYLVLSGLNSQFLFKAEGDKKVIQHLVSMYNQDPNASLPEGVNPFDVAA  207 (327)
Q Consensus       128 ~~~~vFG~~L~~l~~~~~~~~~VP~il~~~i~~i~~~gl~~eGIFR~sg~~~~i~~L~~~~d~~~~~~~~~~~d~~~va~  207 (327)
                      .++++||+||+++++++..+..||.+|.+|++||+++|+++|||||++|+.+.++++++.+|+|...++.+..|+|++|+
T Consensus         2 ~~~~~FG~~L~~l~~~~~~~~~vP~~l~~~~~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~~va~   81 (196)
T d1tx4a_           2 LPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLPAV   81 (196)
T ss_dssp             CTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHHHH
T ss_pred             CCCCCcCCCHHHHHhhCCCCCCCChHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhCCCCccccccccHHHHHH
Confidence            36789999999999988777889999999999999999999999999999999999999999998887766678999999


Q ss_pred             HHHHHHhhCCCCCCChhhHHHHhhH-----HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhccccCCCChhhhHHHh
Q 020379          208 LAKYYLASLPEPLTTFELYDEIKGA-----RSSIHAMRNTLKKLSNVNFMTLEYVTALLLRVSQKSLLNKMDARSLAMEM  282 (327)
Q Consensus       208 lLK~fLr~LPePLl~~~ly~~~~~~-----~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~nLAivf  282 (327)
                      +||.|||+||+||+|.++|+.+.++     .+++..++.++.+||+.|+.+|.+++.||++|+.|++.|+||++|||+||
T Consensus        82 ~lK~fLr~Lp~pLi~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lp~~~~~~L~~l~~~l~~i~~~~~~nkM~~~nLa~~f  161 (196)
T d1tx4a_          82 ILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVF  161 (196)
T ss_dssp             HHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHhCCCCcchHHHHHHHHHHHhcChHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence            9999999999999999999999876     35788999999999999999999999999999999999999999999999


Q ss_pred             hhcccCCCCCC
Q 020379          283 APVIMWQKERK  293 (327)
Q Consensus       283 ~P~Ll~~~~~~  293 (327)
                      ||+|+++++..
T Consensus       162 ~P~l~~~~~~~  172 (196)
T d1tx4a_         162 GPNLLWAKDAA  172 (196)
T ss_dssp             HHHHCCCSSHH
T ss_pred             hhhhcCCCCcc
Confidence            99999988644
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure