Citrus Sinensis ID: 020386

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHEEEEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEHEEHHHcccccccccccccHHEEEHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccccccccHHEEEEHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mraiqksncyhreghnapcaygdtkhmLLFGAVQVVMsqipdfhnMEWLSVIAAIMSFAYSFIGFGLGFAKVIEngrikgsiagvptaNLADKLWLAFQALGDIAFAYPYSIILLEIQdtlkspppenktmKMASMISIFITTFFYLCcgcfgyaafgndtpgnlltgfgfyepywliDLANACIVLHLVGGYQIFSQPVFAFVERWftrkypssgfvnnfytfklpllpplrvNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVlgalnfwplaiyfPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
Flexible Loop (DISEMBL)
mraiqksncyhreghNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
Low Complexity Region (SEG)
MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTiigligsieglisAKLG
Disordered region (IsUnstruct)
********CYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDT*************ASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLI*****
Disordered Region (DISOPRED)
*RAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLK*****NKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKL*
Disordered Region (DISEMBL)
MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
Disordered Region (DISPRO)
*RAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	327	2.2.26 [Sep-21-2011]
Q9FF99	467	Probable amino acid perme	yes	no	0.996	0.698	0.663	1e-121
Q39134	476	Amino acid permease 3 OS=	no	no	0.944	0.649	0.540	1e-105
Q38967	493	Amino acid permease 2 OS=	no	no	0.984	0.653	0.498	1e-105
Q9FN04	466	Amino acid permease 4 OS=	no	no	0.984	0.690	0.513	1e-104
Q42400	485	Amino acid permease 1 OS=	no	no	0.984	0.663	0.516	1e-104
O80592	475	Amino acid permease 8 OS=	no	no	0.981	0.675	0.530	1e-104
P92934	481	Amino acid permease 6 OS=	no	no	0.990	0.673	0.510	1e-99
Q8GUM3	480	Amino acid permease 5 OS=	no	no	0.975	0.664	0.504	2e-98
O22719	451	Lysine histidine transpor	no	no	0.853	0.618	0.293	5e-28
Q9SS86	455	Lysine histidine transpor	no	no	0.862	0.619	0.284	3e-26

>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1

 Score =  436 bits (1120), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/330 (66%), Positives = 270/330 (81%), Gaps = 4/330 (1%)

Query: 2   RAIQKSNCYHREGHNAPCAYGDTKH--MLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFA 59
           RAI KSNCYHR GHNA C+YGD  +  M+LFG  Q+ MSQIP+FHNM WLS++AAIMSF 
Sbjct: 138 RAIMKSNCYHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFT 197

Query: 60  YSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQD 119
           YSFIG GL   K+IEN +I+GSI G+P  N  +K+W+ FQALG+IAF+YP+SIILLEIQD
Sbjct: 198 YSFIGIGLALGKIIENRKIEGSIRGIPAENRGEKVWIVFQALGNIAFSYPFSIILLEIQD 257

Query: 120 TLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLID 179
           TL+SPP E +TMK AS +++FI TFF+ CCGCFGYAAFG+ TPGNLLTGFGFYEP+WL+D
Sbjct: 258 TLRSPPAEKQTMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVD 317

Query: 180 LANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLL--PPLRVNIL 237
            ANACIVLHLVGGYQ++SQP+FA  ER  T+KYP + F+  FY FKLPLL    +R+N +
Sbjct: 318 FANACIVLHLVGGYQVYSQPIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPM 377

Query: 238 RLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWI 297
           R+C RT YV+ TT VA++FPYFN+VLGV+GAL FWPLA+YFPVEM  +QKKI +WTR W+
Sbjct: 378 RMCLRTMYVLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWL 437

Query: 298 VLRTFSFICLLVTIIGLIGSIEGLISAKLG 327
           +LR FSF+CLLV ++ L+GSI GL+ AK G
Sbjct: 438 LLRGFSFVCLLVCLLSLVGSIYGLVGAKFG 467

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2

 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 168/311 (54%), Positives = 231/311 (74%), Gaps = 2/311 (0%)

Query: 1   MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
           M AI++SNC+H+ G   PC      +M+ FG VQ++ SQIPDF  + WLS++AA+MSF Y
Sbjct: 140 MMAIKRSNCFHKSGGKDPCHMNSNPYMIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTY 199

Query: 61  SFIGFGLGFAKVIENGRIKGSIAGVPTANLAD--KLWLAFQALGDIAFAYPYSIILLEIQ 118
           S  G  LG A+V+ NG++KGS+ G+    + +  K+W  FQALGDIAFAY YSIIL+EIQ
Sbjct: 200 SSAGLALGIAQVVVNGKVKGSLTGISIGAVTETQKIWRTFQALGDIAFAYSYSIILIEIQ 259

Query: 119 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLI 178
           DT+KSPP E KTMK A+++S+ +TT FY+ CGC GYAAFG+ +PGNLLTGFGFY PYWL+
Sbjct: 260 DTVKSPPSEEKTMKKATLVSVSVTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLL 319

Query: 179 DLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILR 238
           D+ANA IV+HL+G YQ++ QP+FAF+E+  + ++P S F+       +P   PLR+N+ R
Sbjct: 320 DIANAAIVIHLIGAYQVYCQPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFR 379

Query: 239 LCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIV 298
           L +RT +V+ TT ++++ P+FN V+G+LGAL FWPL +YFPVEMY  QKKI  W+ +W+ 
Sbjct: 380 LIWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVC 439

Query: 299 LRTFSFICLLV 309
           L+ FS  CL+V
Sbjct: 440 LQVFSLGCLVV 450

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for GABA, tryptophan and both neutral and basic amino acids. High affinity transport of cationic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 162/325 (49%), Positives = 238/325 (73%), Gaps = 3/325 (0%)

Query: 1   MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
           M AI++SNC+H+ G   PC      +M++FG  ++++SQ+PDF  + W+S++AA+MSF Y
Sbjct: 156 MMAIKRSNCFHKSGGKDPCHMSSNPYMIVFGVAEILLSQVPDFDQIWWISIVAAVMSFTY 215

Query: 61  SFIGFGLGFAKVIENGRIKGSIAGVP--TANLADKLWLAFQALGDIAFAYPYSIILLEIQ 118
           S IG  LG  +V  NG  KGS+ G+   T     K+W  FQALGDIAFAY YS++L+EIQ
Sbjct: 216 SAIGLALGIVQVAANGVFKGSLTGISIGTVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQ 275

Query: 119 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLI 178
           DT++SPP E+KTMK A+ ISI +TT FY+ CG  GYAAFG+  PGNLLTGFGFY P+WL+
Sbjct: 276 DTVRSPPAESKTMKKATKISIAVTTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLL 335

Query: 179 DLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLP-LLPPLRVNIL 237
           D+ANA IV+HLVG YQ+F+QP+FAF+E+    +YP + F++  +  ++P    P +VN+ 
Sbjct: 336 DIANAAIVVHLVGAYQVFAQPIFAFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVF 395

Query: 238 RLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWI 297
           R+ +R+ +VV+TT ++++ P+FN V+G+LGAL FWPL +YFPVEMY  Q+K+  W+ +W+
Sbjct: 396 RMVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWV 455

Query: 298 VLRTFSFICLLVTIIGLIGSIEGLI 322
            L+  S  CL+++++  +GSI G++
Sbjct: 456 CLQMLSVACLVISVVAGVGSIAGVM 480

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, arginine, glutamate and neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. Has a much higher affinity for basic amino acids as compared with AAP1. May function in xylem-to-phloem transfer and in uptake of amino acids assimilated in the green silique tissue.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 167/325 (51%), Positives = 235/325 (72%), Gaps = 3/325 (0%)

Query: 1   MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
           M AI++SNC+H  G   PC      +M++FG  ++++SQI DF  + WLS++AAIMSF Y
Sbjct: 129 MMAIKRSNCFHESGGKNPCHMSSNPYMIMFGVTEILLSQIKDFDQIWWLSIVAAIMSFTY 188

Query: 61  SFIGFGLGFAKVIENGRIKGSIAGVPTANLAD--KLWLAFQALGDIAFAYPYSIILLEIQ 118
           S IG  LG  +V  NG +KGS+ G+    +    K+W  FQALGDIAFAY YS++L+EIQ
Sbjct: 189 SAIGLALGIIQVAANGVVKGSLTGISIGAVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQ 248

Query: 119 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLI 178
           DT++SPP E+KTMK+A+ ISI +TT FY+ CGC GYAAFG+  PGNLLTGFGFY P+WL+
Sbjct: 249 DTVRSPPAESKTMKIATRISIAVTTTFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWLL 308

Query: 179 DLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLP-LLPPLRVNIL 237
           D+ANA IV+HLVG YQ+F+QP+FAF+E+    ++P S  V   Y  ++P    P +VN+ 
Sbjct: 309 DVANAAIVIHLVGAYQVFAQPIFAFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVF 368

Query: 238 RLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWI 297
           R  +R+ +VV TT ++++ P+FN V+G+LGAL FWPL +YFPVEMY  Q+K+  W+ KW+
Sbjct: 369 RAVYRSGFVVLTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWV 428

Query: 298 VLRTFSFICLLVTIIGLIGSIEGLI 322
            L+  S  CL++T++  +GSI G++
Sbjct: 429 CLQMLSCGCLMITLVAGVGSIAGVM 453

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 168/325 (51%), Positives = 234/325 (72%), Gaps = 3/325 (0%)

Query: 3   AIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSF 62
           A+ KSNC+H +GH A C   +  +M +FG +QV++SQIP+FH + +LS++AA+MSF Y+ 
Sbjct: 149 AVGKSNCFHDKGHTADCTISNYPYMAVFGIIQVILSQIPNFHKLSFLSIMAAVMSFTYAT 208

Query: 63  IGFGLGFAKVIENGRIKGSIAGVPTA---NLADKLWLAFQALGDIAFAYPYSIILLEIQD 119
           IG GL  A V      K S+ G         A K+W +FQA+GDIAFAY Y+ +L+EIQD
Sbjct: 209 IGIGLAIATVAGGKVGKTSMTGTAVGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIEIQD 268

Query: 120 TLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLID 179
           TL+S P ENK MK AS++ +  TTFFY+ CGC GYAAFGN+ PG+ LT FGF+EP+WLID
Sbjct: 269 TLRSSPAENKAMKRASLVGVSTTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWLID 328

Query: 180 LANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRL 239
            ANACI +HL+G YQ+F+QP+F FVE+   R YP + F+ + Y+  +P L    +++ RL
Sbjct: 329 FANACIAVHLIGAYQVFAQPIFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFRL 388

Query: 240 CFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVL 299
            +RTAYVV TT VA+IFP+FN +LG++GA +FWPL +YFPVEM+  Q KI  ++ +WI L
Sbjct: 389 VWRTAYVVITTVVAMIFPFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIAL 448

Query: 300 RTFSFICLLVTIIGLIGSIEGLISA 324
           +T  ++CL+V+++   GSI GLIS+
Sbjct: 449 KTMCYVCLIVSLLAAAGSIAGLISS 473

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, glutamate and neutral amino acids. Reduced affinities for asparagine and valine. Involved in amino acid uptake from the apoplastic cavity into the embryo cells for storage protein accumulation and in root amino acid uptake.

Arabidopsis thaliana (taxid: 3702)

>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1

 Score =  377 bits (968), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 173/326 (53%), Positives = 234/326 (71%), Gaps = 5/326 (1%)

Query: 3   AIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSF 62
           AI KSNCYH +GH A C+  +  +M  FG VQ+++SQ+P+FH + +LS+IAA+MSF+Y+ 
Sbjct: 140 AIGKSNCYHDKGHKAKCSVSNYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYAS 199

Query: 63  IGFGLGFAKV----IENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQ 118
           IG GL  A V    I    + G++ GV     ++K+W  FQA+GDIAF+Y ++ IL+EIQ
Sbjct: 200 IGIGLAIATVASGKIGKTELTGTVIGVDV-TASEKVWKLFQAIGDIAFSYAFTTILIEIQ 258

Query: 119 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLI 178
           DTL+S PPENK MK AS++ +  TT FY+ CGC GYAAFGN  PG+ LT FGFYEPYWLI
Sbjct: 259 DTLRSSPPENKVMKRASLVGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLI 318

Query: 179 DLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILR 238
           D ANACI LHL+G YQ+++QP F FVE    +K+P S F+N  Y+ K+PLL   RVN+ R
Sbjct: 319 DFANACIALHLIGAYQVYAQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLFR 378

Query: 239 LCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIV 298
           L +RT YVV TT VA+IFP+FN +LG+LGA  FWPL +YFPV M+  Q K+  ++R+W+ 
Sbjct: 379 LVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLA 438

Query: 299 LRTFSFICLLVTIIGLIGSIEGLISA 324
           L     +CL+V+ +  +GSI GLI++
Sbjct: 439 LNLLVLVCLIVSALAAVGSIIGLINS 464

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1

 Score =  363 bits (931), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 168/329 (51%), Positives = 234/329 (71%), Gaps = 5/329 (1%)

Query: 1   MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
           M A+++SNC+H+ GHN  CA  +T  M++F  +Q+++SQIP+FHN+ WLS++AA+MSF Y
Sbjct: 143 MVAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQIILSQIPNFHNLSWLSILAAVMSFCY 202

Query: 61  SFIGFGLGFAKVIENGR-IKGSIAGVPTA---NLADKLWLAFQALGDIAFAYPYSIILLE 116
           + IG GL  AK    G  ++ ++ GV      + A+K+W  FQA+GDIAFAY YS +L+E
Sbjct: 203 ASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAEKIWRTFQAIGDIAFAYAYSTVLIE 262

Query: 117 IQDTLKS-PPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPY 175
           IQDTLK+ PP ENK MK AS++ +  TTFFY+ CGC GYAAFGND PGN LTGFGFYEP+
Sbjct: 263 IQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPF 322

Query: 176 WLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVN 235
           WLID AN CI +HL+G YQ+F QP+F FVE    +++P + F+   Y   +P      +N
Sbjct: 323 WLIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSIN 382

Query: 236 ILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRK 295
            LRL +RT+YVV T  VA+IFP+FN  LG++GA +FWPL +YFP+EM+  QKKI  ++  
Sbjct: 383 FLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFT 442

Query: 296 WIVLRTFSFICLLVTIIGLIGSIEGLISA 324
           W  L+  S+ C +V+++   GS++GLI +
Sbjct: 443 WTWLKILSWTCFIVSLVAAAGSVQGLIQS 471

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xylem parenchyma.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1

 Score =  358 bits (920), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 167/331 (50%), Positives = 230/331 (69%), Gaps = 12/331 (3%)

Query: 3   AIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSF 62
           AIQ+++C    G N PC      +M+ FG VQ++ SQIPDF  + WLS++AA+MSFAYS 
Sbjct: 140 AIQRTSCQQMNGPNDPCHVNGNVYMIAFGIVQIIFSQIPDFDQLWWLSIVAAVMSFAYSA 199

Query: 63  IGFGLGFAKVIENGRIKGSIAGVP--------TANLADKLWLAFQALGDIAFAYPYSIIL 114
           IG GLG +KV+EN  IKGS+ GV         T   + K+W  FQ+LG+IAFAY YS+IL
Sbjct: 200 IGLGLGVSKVVENKEIKGSLTGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSMIL 259

Query: 115 LEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEP 174
           +EIQDT+KSPP E  TM+ A+ +S+ +TT FY+ CGC GYAAFG++ PGNLL   GF  P
Sbjct: 260 IEIQDTVKSPPAEVNTMRKATFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNP 319

Query: 175 YWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLP--PL 232
           YWL+D+AN  IV+HLVG YQ++ QP+FAFVE+  +R++P S FV      K+ L P  P 
Sbjct: 320 YWLLDIANLAIVIHLVGAYQVYCQPLFAFVEKEASRRFPESEFVTK--EIKIQLFPGKPF 377

Query: 233 RVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAW 292
            +N+ RL +RT +V++TT ++++ P+FN V+G+LGA+ FWPL +YFPVEMY  QK +  W
Sbjct: 378 NLNLFRLVWRTFFVMTTTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRW 437

Query: 293 TRKWIVLRTFSFICLLVTIIGLIGSIEGLIS 323
             KW+ L+  S  CL V++    GS+ G++S
Sbjct: 438 GTKWVCLQVLSVTCLFVSVAAAAGSVIGIVS 468

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate and both neutral and basic amino acids. Reduced affinities for asparagine and valine. High affinity transport of the cationic amino acids arginine and lysine, but not of histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2

 Score =  125 bits (313), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 154/313 (49%), Gaps = 34/313 (10%)

Query: 19  CAYGDTKH-MLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGF----GLGFAKVI 73
           C     +H +L+F + Q V+S + +F+++  +S++AA+MS +YS I +      G A  +
Sbjct: 155 CRKLKVRHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVANNV 214

Query: 74  ENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPP--PENKTM 131
           E G  + +   VP A L         ALG++AFAY    ++LEIQ T+ S P  P  + M
Sbjct: 215 EYGYKRRNNTSVPLAFLG--------ALGEMAFAYAGHNVVLEIQATIPSTPENPSKRPM 266

Query: 132 KMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVG 191
              ++++  I  F Y      G+  FGN+   N+L       P  LI +AN  +++HL+G
Sbjct: 267 WKGAIVAYIIVAFCYFPVALVGFWTFGNNVEENILKTL--RGPKGLIIVANIFVIIHLMG 324

Query: 192 GYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTA 251
            YQ+++ PVF  +E    +K+  S               P RV  LR   R  +V +T  
Sbjct: 325 SYQVYAMPVFDMIESVMIKKWHFS---------------PTRV--LRFTIRWTFVAATMG 367

Query: 252 VAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTI 311
           +A+  P+F+ +L   G   F P   + P  ++ + KK   ++  W +      + +LV I
Sbjct: 368 IAVALPHFSALLSFFGGFIFAPTTYFIPCIIWLILKKPKRFSLSWCINWICIILGVLVMI 427

Query: 312 IGLIGSIEGLISA 324
           I  IG +  L++A
Sbjct: 428 IAPIGGLAKLMNA 440

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2

 Score =  119 bits (298), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 149/316 (47%), Gaps = 34/316 (10%)

Query: 14  GHNAPCAYGDTKH-MLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKV 72
           G    C     +H +L+F + Q V+S + +F+++  +S++AA+MS +YS I +     K 
Sbjct: 149 GDGDKCTKLRIQHFILIFASSQFVLSLLKNFNSISGVSLVAAVMSVSYSTIAWVASLRKG 208

Query: 73  IENGRI----KGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPP--P 126
              G +    +     VP A L+        ALG++AFAY    ++LEIQ T+ S P  P
Sbjct: 209 ATTGSVEYGYRKRTTSVPLAFLS--------ALGEMAFAYAGHNVVLEIQATIPSTPENP 260

Query: 127 ENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIV 186
             + M   ++++  I  F Y      G+  FGN    ++L      +P  L+ +AN  +V
Sbjct: 261 SKRPMWKGAVVAYIIVAFCYFPVALVGFKTFGNSVEESILESLT--KPTALVIVANMFVV 318

Query: 187 LHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYV 246
           +HL+G YQ+++ PVF  +E    R +  S               P RV  LR   R  +V
Sbjct: 319 IHLLGSYQVYAMPVFDMIESVMIRIWHFS---------------PTRV--LRFTIRWTFV 361

Query: 247 VSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFIC 306
            +T  +A+  PY++ +L   G   F P   + P  M+ + KK   ++  W +        
Sbjct: 362 AATMGIAVGLPYYSALLSFFGGFVFAPTTYFIPCIMWLILKKPKRFSLSWCMNWFCIIFG 421

Query: 307 LLVTIIGLIGSIEGLI 322
           L++ II  IG +  LI
Sbjct: 422 LVLMIIAPIGGLAKLI 437

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
224122284	458	amino acid permease [Populus trichocarpa	1.0	0.713	0.862	1e-168
255586132	456	amino acid transporter, putative [Ricinu	1.0	0.717	0.862	1e-167
359494348	623	PREDICTED: probable amino acid permease	0.996	0.523	0.800	1e-162
296089993	458	unnamed protein product [Vitis vinifera]	0.996	0.711	0.800	1e-161
224122280	440	amino acid permease [Populus trichocarpa	0.984	0.731	0.798	1e-156
356501671	461	PREDICTED: probable amino acid permease	0.996	0.707	0.760	1e-153
356552382	461	PREDICTED: LOW QUALITY PROTEIN: probable	0.996	0.707	0.760	1e-152
357495243	467	Amino acid permease [Medicago truncatula	0.996	0.698	0.766	1e-151
356527198	461	PREDICTED: probable amino acid permease	0.996	0.707	0.745	1e-150
356566280	461	PREDICTED: probable amino acid permease	0.996	0.707	0.748	1e-150

>gi|224122284|ref|XP_002330585.1| amino acid permease [Populus trichocarpa] gi|222872143|gb|EEF09274.1| amino acid permease [Populus trichocarpa]

 Score =  596 bits (1536), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 282/327 (86%), Positives = 305/327 (93%)

Query: 1   MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
           MRAIQ+SNCYHREGH A C YGD  +MLLFGAVQ+++SQIPDFHNMEWLSVIAAIMSF Y
Sbjct: 132 MRAIQRSNCYHREGHKASCEYGDAIYMLLFGAVQILVSQIPDFHNMEWLSVIAAIMSFTY 191

Query: 61  SFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDT 120
           SFIGFGLG A+VIENG IKGSIAGV  A  A+KLWLAF+ALGDIAFAYPYSIILLEIQDT
Sbjct: 192 SFIGFGLGVAQVIENGTIKGSIAGVSAATTANKLWLAFEALGDIAFAYPYSIILLEIQDT 251

Query: 121 LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDL 180
           LKSPPPENKTMK ASMISIFITTFFYLCCGCFGYAAFGN+TPGNLLTGFGF+EPYWL+DL
Sbjct: 252 LKSPPPENKTMKKASMISIFITTFFYLCCGCFGYAAFGNNTPGNLLTGFGFFEPYWLVDL 311

Query: 181 ANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLC 240
           ANAC+VLHLVGGYQI+SQPVFAFVE WF+RK+PSSGFVNNF++FKLPL+ PL +N+ RLC
Sbjct: 312 ANACVVLHLVGGYQIYSQPVFAFVEGWFSRKFPSSGFVNNFHSFKLPLIRPLHINLFRLC 371

Query: 241 FRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLR 300
           FRT YV STTAVA+ FPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLR
Sbjct: 372 FRTVYVASTTAVAMAFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLR 431

Query: 301 TFSFICLLVTIIGLIGSIEGLISAKLG 327
           TFSF CLL+TI GL+GSIEGLISAKLG
Sbjct: 432 TFSFACLLITIAGLLGSIEGLISAKLG 458

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586132|ref|XP_002533728.1| amino acid transporter, putative [Ricinus communis] gi|223526366|gb|EEF28659.1| amino acid transporter, putative [Ricinus communis]

 Score =  592 bits (1526), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 282/327 (86%), Positives = 301/327 (92%)

Query: 1   MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
           M+AIQKSNCYHREGH APC+Y DT  MLLFG VQ+V+SQIP+FHNMEWLSVIAAIMSF Y
Sbjct: 130 MKAIQKSNCYHREGHRAPCSYEDTYFMLLFGFVQIVVSQIPNFHNMEWLSVIAAIMSFTY 189

Query: 61  SFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDT 120
           SFIGFGLGFAKVIENGRIKGSI GVP ANLADKLWLAF+ALGDIAFAYPYS+ILLEIQDT
Sbjct: 190 SFIGFGLGFAKVIENGRIKGSITGVPAANLADKLWLAFEALGDIAFAYPYSLILLEIQDT 249

Query: 121 LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDL 180
           LKS PPENKTMK  SMI+IF+TTFFYLCCGCFGYAAFGN+TPGNLLTGFGFYEPYWLID 
Sbjct: 250 LKSSPPENKTMKKGSMIAIFVTTFFYLCCGCFGYAAFGNNTPGNLLTGFGFYEPYWLIDF 309

Query: 181 ANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLC 240
           ANACIVLHLVGGYQI+SQPVFAFVE WF  KYP S FVN FYT KLP  PPL+VNILRLC
Sbjct: 310 ANACIVLHLVGGYQIYSQPVFAFVEGWFGNKYPRSRFVNKFYTMKLPFSPPLQVNILRLC 369

Query: 241 FRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLR 300
            RTAYV +TTA+A+ FPYFNQ+LGVLGALNFWPLAIYFPVEMYFVQKKIG WTRKWIVLR
Sbjct: 370 SRTAYVAATTAIAMTFPYFNQILGVLGALNFWPLAIYFPVEMYFVQKKIGPWTRKWIVLR 429

Query: 301 TFSFICLLVTIIGLIGSIEGLISAKLG 327
           TFSF+CLLV+I+GLIGSIEGLISAK G
Sbjct: 430 TFSFVCLLVSIVGLIGSIEGLISAKFG 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494348|ref|XP_002268981.2| PREDICTED: probable amino acid permease 7-like [Vitis vinifera]

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 261/326 (80%), Positives = 300/326 (92%)

Query: 1   MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
           MRAIQ+SNCYH+EGHNA CAYGDT +MLLFG +Q+VMSQIPDFHNMEWLS++AAIMSF+Y
Sbjct: 297 MRAIQRSNCYHKEGHNASCAYGDTFYMLLFGVIQIVMSQIPDFHNMEWLSIVAAIMSFSY 356

Query: 61  SFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDT 120
           + IG GLGFAKV+ENG IKGSI G+  +N ADK+WL FQALGDIAFAYPYS+ILLEIQDT
Sbjct: 357 ASIGLGLGFAKVVENGMIKGSIEGISASNTADKIWLVFQALGDIAFAYPYSLILLEIQDT 416

Query: 121 LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDL 180
           LK+PPPENKTMK ASM +I ITTFFYLCCGCFGYAAFG+DTPGNLLTGFGF+EPYWLID 
Sbjct: 417 LKAPPPENKTMKKASMSAILITTFFYLCCGCFGYAAFGDDTPGNLLTGFGFFEPYWLIDF 476

Query: 181 ANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLC 240
           ANACI+LHLVGGYQ++SQPVFAFVERW TRK+P+SGFVN FYT KLPLLP  ++N+LR+C
Sbjct: 477 ANACIILHLVGGYQVYSQPVFAFVERWVTRKFPNSGFVNKFYTLKLPLLPAFQMNLLRIC 536

Query: 241 FRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLR 300
           FRT YV+STT +A+IFPYFNQVLG+LGALNFWPLAIYFPVEMY VQKKIGAWTR WI+LR
Sbjct: 537 FRTTYVISTTGIAMIFPYFNQVLGLLGALNFWPLAIYFPVEMYLVQKKIGAWTRTWIILR 596

Query: 301 TFSFICLLVTIIGLIGSIEGLISAKL 326
           TFS +CLLV+I+ L+GS+EG+ISAK+
Sbjct: 597 TFSLVCLLVSILTLVGSVEGIISAKV 622

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089993|emb|CBI39812.3| unnamed protein product [Vitis vinifera]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 261/326 (80%), Positives = 300/326 (92%)

Query: 1   MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
           MRAIQ+SNCYH+EGHNA CAYGDT +MLLFG +Q+VMSQIPDFHNMEWLS++AAIMSF+Y
Sbjct: 132 MRAIQRSNCYHKEGHNASCAYGDTFYMLLFGVIQIVMSQIPDFHNMEWLSIVAAIMSFSY 191

Query: 61  SFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDT 120
           + IG GLGFAKV+ENG IKGSI G+  +N ADK+WL FQALGDIAFAYPYS+ILLEIQDT
Sbjct: 192 ASIGLGLGFAKVVENGMIKGSIEGISASNTADKIWLVFQALGDIAFAYPYSLILLEIQDT 251

Query: 121 LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDL 180
           LK+PPPENKTMK ASM +I ITTFFYLCCGCFGYAAFG+DTPGNLLTGFGF+EPYWLID 
Sbjct: 252 LKAPPPENKTMKKASMSAILITTFFYLCCGCFGYAAFGDDTPGNLLTGFGFFEPYWLIDF 311

Query: 181 ANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLC 240
           ANACI+LHLVGGYQ++SQPVFAFVERW TRK+P+SGFVN FYT KLPLLP  ++N+LR+C
Sbjct: 312 ANACIILHLVGGYQVYSQPVFAFVERWVTRKFPNSGFVNKFYTLKLPLLPAFQMNLLRIC 371

Query: 241 FRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLR 300
           FRT YV+STT +A+IFPYFNQVLG+LGALNFWPLAIYFPVEMY VQKKIGAWTR WI+LR
Sbjct: 372 FRTTYVISTTGIAMIFPYFNQVLGLLGALNFWPLAIYFPVEMYLVQKKIGAWTRTWIILR 431

Query: 301 TFSFICLLVTIIGLIGSIEGLISAKL 326
           TFS +CLLV+I+ L+GS+EG+ISAK+
Sbjct: 432 TFSLVCLLVSILTLVGSVEGIISAKV 457

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122280|ref|XP_002330584.1| amino acid permease [Populus trichocarpa] gi|222872142|gb|EEF09273.1| amino acid permease [Populus trichocarpa]

 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 257/322 (79%), Positives = 291/322 (90%)

Query: 1   MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
           M AI++SNCYH +GH APC + D  +ML+FGAVQ+V SQIPDFH+++WLSVIAAIMSFAY
Sbjct: 119 MSAIRRSNCYHDKGHAAPCKHKDIPNMLMFGAVQIVASQIPDFHSIKWLSVIAAIMSFAY 178

Query: 61  SFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDT 120
           SF GFGLGFAKVIENG IKGSIAG P +  A KLWLAFQALGDIA++YPY+++LLEIQDT
Sbjct: 179 SFTGFGLGFAKVIENGMIKGSIAGAPASTRAKKLWLAFQALGDIAYSYPYALVLLEIQDT 238

Query: 121 LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDL 180
           LKSPPPENKTMK ASMI++ +TTFFYLCCGCFGYAAFGN+TPGNLLTGFGFYEPYWLID 
Sbjct: 239 LKSPPPENKTMKKASMIAMILTTFFYLCCGCFGYAAFGNNTPGNLLTGFGFYEPYWLIDF 298

Query: 181 ANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLC 240
           ANAC+VLHLVGGYQ+FSQPVF F ERWF+ K+PS+GFVN FY FKLPLLP  ++N+ R+C
Sbjct: 299 ANACVVLHLVGGYQLFSQPVFEFAERWFSEKFPSNGFVNKFYNFKLPLLPSFQINLFRIC 358

Query: 241 FRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLR 300
           FRTAYVVSTTAVA +FPYFNQVLG+LGALNFWPLAIYFPVEMYFVQ KI AWTRKWIVLR
Sbjct: 359 FRTAYVVSTTAVAAVFPYFNQVLGLLGALNFWPLAIYFPVEMYFVQNKIEAWTRKWIVLR 418

Query: 301 TFSFICLLVTIIGLIGSIEGLI 322
           TFS  CLLV+I+GLIGSIEG+I
Sbjct: 419 TFSLACLLVSIVGLIGSIEGII 440

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501671|ref|XP_003519647.1| PREDICTED: probable amino acid permease 7-like [Glycine max]

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 248/326 (76%), Positives = 288/326 (88%)

Query: 1   MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
           +RAI KSNCYH+EGH APC YGD  +M+LFG VQ++MS IPD HNM W+S++AAIMSF Y
Sbjct: 135 LRAILKSNCYHKEGHQAPCKYGDAVYMMLFGLVQIIMSFIPDLHNMAWVSIVAAIMSFTY 194

Query: 61  SFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDT 120
           S IG GLG   VIENGRI GS+ GVP +N+ADKLWL FQ +GDIAFAYPY++ILLEIQDT
Sbjct: 195 SSIGLGLGITTVIENGRIMGSLTGVPASNIADKLWLVFQGIGDIAFAYPYTVILLEIQDT 254

Query: 121 LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDL 180
           L+SPPPENKTMK ASMI+I ITTFFYLCCGCFGYAAFGN TPGNLLTGFGFYEPYWLID 
Sbjct: 255 LESPPPENKTMKKASMIAILITTFFYLCCGCFGYAAFGNQTPGNLLTGFGFYEPYWLIDF 314

Query: 181 ANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLC 240
           ANACIVLHLVGGYQI+SQP++  V+RW +++YP+SGFVNNFY  KLP LP  ++N+ R+C
Sbjct: 315 ANACIVLHLVGGYQIYSQPIYGAVDRWCSKRYPNSGFVNNFYQLKLPRLPAFQLNMFRIC 374

Query: 241 FRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLR 300
           FRTAYVVSTT +AI+FPYFNQV+GVLGAL FWPLAIYFPVEMYFVQ+K+ AW+RKWIVLR
Sbjct: 375 FRTAYVVSTTGLAILFPYFNQVIGVLGALGFWPLAIYFPVEMYFVQRKVEAWSRKWIVLR 434

Query: 301 TFSFICLLVTIIGLIGSIEGLISAKL 326
           TFSFIC LV+++GLIGS+EG+IS KL
Sbjct: 435 TFSFICFLVSLLGLIGSLEGIISEKL 460

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552382|ref|XP_003544547.1| PREDICTED: LOW QUALITY PROTEIN: probable amino acid permease 7-like [Glycine max]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 248/326 (76%), Positives = 286/326 (87%)

Query: 1   MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
           +RAI KSNCYH+EGH APC YGD  +M+LFG VQV+MS IPD HNM W+S++AAIMSF Y
Sbjct: 135 LRAILKSNCYHKEGHQAPCKYGDVVYMMLFGLVQVIMSFIPDLHNMAWVSIVAAIMSFTY 194

Query: 61  SFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDT 120
           S IG GLG   VIENGRI GS+ GVP +N+ADKLWL FQA+GDIAFAYPY++ILLEIQDT
Sbjct: 195 SSIGLGLGITTVIENGRIMGSLTGVPASNIADKLWLVFQAIGDIAFAYPYTVILLEIQDT 254

Query: 121 LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDL 180
           L+SPPPENKTMK ASMI+I ITTFFYLCCGCFGYAAFGN TPGNLLTGFGFYEPYWLID 
Sbjct: 255 LESPPPENKTMKKASMIAILITTFFYLCCGCFGYAAFGNQTPGNLLTGFGFYEPYWLIDF 314

Query: 181 ANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLC 240
           ANACIVLHLVGGYQI+SQP++  V+RW +++YP+SGFVNNFY  KLP LP  ++N+ R+C
Sbjct: 315 ANACIVLHLVGGYQIYSQPIYGAVDRWCSKRYPNSGFVNNFYQLKLPRLPAFQLNMFRIC 374

Query: 241 FRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLR 300
           FRT  VVSTT +AI+FPYFNQV+GVLGAL FWPLAIYFPVEMYFVQ+KI AW+RKWIVLR
Sbjct: 375 FRTTXVVSTTGLAILFPYFNQVIGVLGALGFWPLAIYFPVEMYFVQRKIEAWSRKWIVLR 434

Query: 301 TFSFICLLVTIIGLIGSIEGLISAKL 326
           TFSFIC LV+++ LIGS+EG+IS KL
Sbjct: 435 TFSFICFLVSLVALIGSLEGIISEKL 460

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495243|ref|XP_003617910.1| Amino acid permease [Medicago truncatula] gi|355519245|gb|AET00869.1| Amino acid permease [Medicago truncatula]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 250/326 (76%), Positives = 283/326 (86%)

Query: 1   MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
           +RAI KSNCYH+EGH A C YGDT +M+LFG VQV+MS IPD HNM  LSV+AA+MSF Y
Sbjct: 141 IRAILKSNCYHKEGHEAHCKYGDTIYMILFGLVQVIMSFIPDLHNMALLSVVAAVMSFTY 200

Query: 61  SFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDT 120
           S IG GLG   VIENGRI GS+AGVP +N+ADKLWL FQALGDIAFAYPY+ ILLEIQDT
Sbjct: 201 SSIGLGLGVTNVIENGRIMGSVAGVPASNIADKLWLVFQALGDIAFAYPYTTILLEIQDT 260

Query: 121 LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDL 180
           L+SPP ENKTMK ASMI+I ITTFFYLCC CFGYAAFGN TPGNLLTGFGFYEPYWLID 
Sbjct: 261 LESPPAENKTMKKASMIAILITTFFYLCCACFGYAAFGNQTPGNLLTGFGFYEPYWLIDF 320

Query: 181 ANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLC 240
           ANACIVLHLVGGYQI+SQP +   +RW +RKYP+SGFVNNFY  KLPLLP  ++N+LR+C
Sbjct: 321 ANACIVLHLVGGYQIYSQPTYTAADRWCSRKYPNSGFVNNFYQLKLPLLPAFQLNMLRIC 380

Query: 241 FRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLR 300
           FRTAYV+STT +AI+FPYFN+VLGVLGAL FWPL IYFPVEMYFVQ KI AW+ KWIVLR
Sbjct: 381 FRTAYVISTTGLAIMFPYFNEVLGVLGALGFWPLTIYFPVEMYFVQNKIEAWSTKWIVLR 440

Query: 301 TFSFICLLVTIIGLIGSIEGLISAKL 326
           TFSF+CLLVT++ L+GS+EG+IS KL
Sbjct: 441 TFSFVCLLVTVVSLVGSLEGIISEKL 466

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527198|ref|XP_003532199.1| PREDICTED: probable amino acid permease 7-like [Glycine max]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 243/326 (74%), Positives = 287/326 (88%)

Query: 1   MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
           + AI +SNCYH++GH APC YG   +M LFG VQ+VMS IPD HNM W+SV+AA+MSF Y
Sbjct: 135 LSAILRSNCYHKKGHEAPCKYGGNLYMALFGLVQIVMSFIPDLHNMAWVSVVAALMSFTY 194

Query: 61  SFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDT 120
           SFIG GLG A VI+NGRI GS+ G+PT  +ADK WL FQALGDIAFAYPYSI+LLEIQDT
Sbjct: 195 SFIGLGLGIATVIKNGRIMGSLTGIPTDKIADKFWLVFQALGDIAFAYPYSILLLEIQDT 254

Query: 121 LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDL 180
           L+SPPPEN+TMK ASM++IFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGF+EP+WLIDL
Sbjct: 255 LESPPPENQTMKKASMVAIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFFEPFWLIDL 314

Query: 181 ANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLC 240
           ANACI+LHLVGGYQI+SQP+++ V+RW +RK+P+SGFVNNFY  KLPLLP  ++N+ R C
Sbjct: 315 ANACIILHLVGGYQIYSQPIYSTVDRWASRKFPNSGFVNNFYRVKLPLLPGFQLNLFRFC 374

Query: 241 FRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLR 300
           FRT YV+ST  +AI FPYFNQ+LGVLGA+NFWPLAIYFPVEMYFVQ+KI AW+ KWIVLR
Sbjct: 375 FRTTYVISTIGLAIFFPYFNQILGVLGAINFWPLAIYFPVEMYFVQQKIAAWSSKWIVLR 434

Query: 301 TFSFICLLVTIIGLIGSIEGLISAKL 326
           TFSF C LVT++GL+GS+EG++SAKL
Sbjct: 435 TFSFACFLVTVMGLVGSLEGIVSAKL 460

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566280|ref|XP_003551361.1| PREDICTED: probable amino acid permease 7-like [Glycine max]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 244/326 (74%), Positives = 286/326 (87%)

Query: 1   MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
           + AI +SNCYH++GH APC YG   +M LFG VQ+VMS IPD HNM W+SV+AA+MSF Y
Sbjct: 135 LSAILRSNCYHKKGHEAPCKYGGNLYMALFGLVQIVMSFIPDLHNMAWVSVVAALMSFTY 194

Query: 61  SFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDT 120
           SFIG GLG A VI+NGRI GS+ G+PT  +ADK WL FQALGDIAFAYPYSI+LLEIQDT
Sbjct: 195 SFIGLGLGIATVIKNGRIMGSLTGIPTDKIADKFWLVFQALGDIAFAYPYSILLLEIQDT 254

Query: 121 LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDL 180
           L+SPPPEN+TMK ASM++IFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGF+EP+WLIDL
Sbjct: 255 LESPPPENQTMKKASMVAIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFFEPFWLIDL 314

Query: 181 ANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLC 240
           ANACI+LHLVGGYQI+SQP+++ V+RW +RK+P+SGFVNNFY  KLPLLP  ++N+ R C
Sbjct: 315 ANACIILHLVGGYQIYSQPIYSTVDRWASRKFPNSGFVNNFYKVKLPLLPGFQLNLFRFC 374

Query: 241 FRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLR 300
           FRT YV+STT +AI FPYFNQ+LGVLGA+NFWPLAIYFPVEMYFVQ KI AW+ KWIVLR
Sbjct: 375 FRTTYVISTTGLAIFFPYFNQILGVLGAINFWPLAIYFPVEMYFVQNKIAAWSSKWIVLR 434

Query: 301 TFSFICLLVTIIGLIGSIEGLISAKL 326
           TFSF C LVT +GL+GS+EG++SAKL
Sbjct: 435 TFSFACFLVTGMGLVGSLEGIVSAKL 460

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
TAIR|locus:2172868	467	AAP7 "amino acid permease 7" [	0.996	0.698	0.645	3.6e-121
TAIR|locus:2031402	476	AAP3 "amino acid permease 3" [	0.948	0.651	0.538	3.9e-99
TAIR|locus:2184707	493	AAP2 "amino acid permease 2" [	0.948	0.628	0.504	9.7e-96
TAIR|locus:2163981	466	AAP4 "amino acid permease 4" [	0.948	0.665	0.520	1.6e-95
TAIR|locus:2168912	481	AAP6 "amino acid permease 6" [	0.948	0.644	0.517	1.1e-94
TAIR|locus:2201871	475	AAP8 "amino acid permease 8" [	0.938	0.646	0.535	1.8e-94
TAIR|locus:2016600	485	AAP1 "amino acid permease 1" [	0.938	0.632	0.519	6.1e-94
TAIR|locus:2205876	480	AAP5 "amino acid permease 5" [	0.935	0.637	0.512	3.1e-90
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.556	0.412	0.347	6.2e-36
TAIR|locus:2031215	440	AT1G25530 [Arabidopsis thalian	0.584	0.434	0.34	7e-34

TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1192 (424.7 bits), Expect = 3.6e-121, P = 3.6e-121
 Identities = 213/330 (64%), Positives = 260/330 (78%)

Query:     2 RAIQKSNCYHREGHNAPCAYGDTKH--MLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFA 59
             RAI KSNCYHR GHNA C+YGD  +  M+LFG  Q+ MSQIP+FHNM WLS++AAIMSF 
Sbjct:   138 RAIMKSNCYHRNGHNATCSYGDNNNYFMVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFT 197

Query:    60 YSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQD 119
             YSFIG GL   K+IEN +I+GSI G+P  N  +K+W+ FQALG+IAF+YP+SIILLEIQD
Sbjct:   198 YSFIGIGLALGKIIENRKIEGSIRGIPAENRGEKVWIVFQALGNIAFSYPFSIILLEIQD 257

Query:   120 TLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLID 179
             TL+SPP E +TMK AS +++FI TFF+ CCGCFGYAAFG+ TPGNLLTGFGFYEP+WL+D
Sbjct:   258 TLRSPPAEKQTMKKASTVAVFIQTFFFFCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVD 317

Query:   180 LANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLL--PPLRVNIL 237
              ANACIVLHLVGGYQ++SQP+FA  ER  T+KYP + F+  FY FKLPLL    +R+N +
Sbjct:   318 FANACIVLHLVGGYQVYSQPIFAAAERSLTKKYPENKFIARFYGFKLPLLRGETVRLNPM 377

Query:   238 RLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWI 297
             R+C RT YV+ TT VA++FPYFN+VLGV+GAL FWPLA+YFPVEM  +QKKI +WTR W+
Sbjct:   378 RMCLRTMYVLITTGVAVMFPYFNEVLGVVGALAFWPLAVYFPVEMCILQKKIRSWTRPWL 437

Query:   298 VLRTFSFICLLVTXXXXXXXXXXXXXAKLG 327
             +LR FSF+CLLV              AK G
Sbjct:   438 LLRGFSFVCLLVCLLSLVGSIYGLVGAKFG 467

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
 Identities = 168/312 (53%), Positives = 232/312 (74%)

Query:     1 MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
             M AI++SNC+H+ G   PC      +M+ FG VQ++ SQIPDF  + WLS++AA+MSF Y
Sbjct:   140 MMAIKRSNCFHKSGGKDPCHMNSNPYMIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTY 199

Query:    61 SFIGFGLGFAKVIENGRIKGSIAGVPTANLAD--KLWLAFQALGDIAFAYPYSIILLEIQ 118
             S  G  LG A+V+ NG++KGS+ G+    + +  K+W  FQALGDIAFAY YSIIL+EIQ
Sbjct:   200 SSAGLALGIAQVVVNGKVKGSLTGISIGAVTETQKIWRTFQALGDIAFAYSYSIILIEIQ 259

Query:   119 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLI 178
             DT+KSPP E KTMK A+++S+ +TT FY+ CGC GYAAFG+ +PGNLLTGFGFY PYWL+
Sbjct:   260 DTVKSPPSEEKTMKKATLVSVSVTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLL 319

Query:   179 DLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILR 238
             D+ANA IV+HL+G YQ++ QP+FAF+E+  + ++P S F+       +P   PLR+N+ R
Sbjct:   320 DIANAAIVIHLIGAYQVYCQPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFR 379

Query:   239 LCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIV 298
             L +RT +V+ TT ++++ P+FN V+G+LGAL FWPL +YFPVEMY  QKKI  W+ +W+ 
Sbjct:   380 LIWRTVFVIITTVISMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVC 439

Query:   299 LRTFSFICLLVT 310
             L+ FS  CL+V+
Sbjct:   440 LQVFSLGCLVVS 451

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015802 "basic amino acid transport" evidence=RCA;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 158/313 (50%), Positives = 229/313 (73%)

Query:     1 MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
             M AI++SNC+H+ G   PC      +M++FG  ++++SQ+PDF  + W+S++AA+MSF Y
Sbjct:   156 MMAIKRSNCFHKSGGKDPCHMSSNPYMIVFGVAEILLSQVPDFDQIWWISIVAAVMSFTY 215

Query:    61 SFIGFGLGFAKVIENGRIKGSIAGVP--TANLADKLWLAFQALGDIAFAYPYSIILLEIQ 118
             S IG  LG  +V  NG  KGS+ G+   T     K+W  FQALGDIAFAY YS++L+EIQ
Sbjct:   216 SAIGLALGIVQVAANGVFKGSLTGISIGTVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQ 275

Query:   119 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLI 178
             DT++SPP E+KTMK A+ ISI +TT FY+ CG  GYAAFG+  PGNLLTGFGFY P+WL+
Sbjct:   276 DTVRSPPAESKTMKKATKISIAVTTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLL 335

Query:   179 DLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLP-LLPPLRVNIL 237
             D+ANA IV+HLVG YQ+F+QP+FAF+E+    +YP + F++  +  ++P    P +VN+ 
Sbjct:   336 DIANAAIVVHLVGAYQVFAQPIFAFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVF 395

Query:   238 RLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWI 297
             R+ +R+ +VV+TT ++++ P+FN V+G+LGAL FWPL +YFPVEMY  Q+K+  W+ +W+
Sbjct:   396 RMVYRSGFVVTTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWV 455

Query:   298 VLRTFSFICLLVT 310
              L+  S  CL+++
Sbjct:   456 CLQMLSVACLVIS 468

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0016020 "membrane" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015800 "acidic amino acid transport" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 950 (339.5 bits), Expect = 1.6e-95, P = 1.6e-95
 Identities = 163/313 (52%), Positives = 226/313 (72%)

Query:     1 MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
             M AI++SNC+H  G   PC      +M++FG  ++++SQI DF  + WLS++AAIMSF Y
Sbjct:   129 MMAIKRSNCFHESGGKNPCHMSSNPYMIMFGVTEILLSQIKDFDQIWWLSIVAAIMSFTY 188

Query:    61 SFIGFGLGFAKVIENGRIKGSIAGVPTANLAD--KLWLAFQALGDIAFAYPYSIILLEIQ 118
             S IG  LG  +V  NG +KGS+ G+    +    K+W  FQALGDIAFAY YS++L+EIQ
Sbjct:   189 SAIGLALGIIQVAANGVVKGSLTGISIGAVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQ 248

Query:   119 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLI 178
             DT++SPP E+KTMK+A+ ISI +TT FY+ CGC GYAAFG+  PGNLLTGFGFY P+WL+
Sbjct:   249 DTVRSPPAESKTMKIATRISIAVTTTFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWLL 308

Query:   179 DLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLP-LLPPLRVNIL 237
             D+ANA IV+HLVG YQ+F+QP+FAF+E+    ++P S  V   Y  ++P    P +VN+ 
Sbjct:   309 DVANAAIVIHLVGAYQVFAQPIFAFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVF 368

Query:   238 RLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWI 297
             R  +R+ +VV TT ++++ P+FN V+G+LGAL FWPL +YFPVEMY  Q+K+  W+ KW+
Sbjct:   369 RAVYRSGFVVLTTVISMLMPFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWV 428

Query:   298 VLRTFSFICLLVT 310
              L+  S  CL++T
Sbjct:   429 CLQMLSCGCLMIT 441

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA;TAS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015399 "primary active transmembrane transporter activity" evidence=IDA

TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
 Identities = 163/315 (51%), Positives = 224/315 (71%)

Query:     1 MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 60
             M A+++SNC+H+ GHN  CA  +T  M++F  +Q+++SQIP+FHN+ WLS++AA+MSF Y
Sbjct:   143 MVAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQIILSQIPNFHNLSWLSILAAVMSFCY 202

Query:    61 SFIGFGLGFAKVIENGR-IKGSIAGVPTA---NLADKLWLAFQALGDIAFAYPYSIILLE 116
             + IG GL  AK    G  ++ ++ GV      + A+K+W  FQA+GDIAFAY YS +L+E
Sbjct:   203 ASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAEKIWRTFQAIGDIAFAYAYSTVLIE 262

Query:   117 IQDTLKS-PPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPY 175
             IQDTLK+ PP ENK MK AS++ +  TTFFY+ CGC GYAAFGND PGN LTGFGFYEP+
Sbjct:   263 IQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPF 322

Query:   176 WLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVN 235
             WLID AN CI +HL+G YQ+F QP+F FVE    +++P + F+   Y   +P      +N
Sbjct:   323 WLIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSIN 382

Query:   236 ILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRK 295
              LRL +RT+YVV T  VA+IFP+FN  LG++GA +FWPL +YFP+EM+  QKKI  ++  
Sbjct:   383 FLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFT 442

Query:   296 WIVLRTFSFICLLVT 310
             W  L+  S+ C +V+
Sbjct:   443 WTWLKILSWTCFIVS 457

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015810 "aspartate transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IDA

TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 167/312 (53%), Positives = 225/312 (72%)

Query:     3 AIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSF 62
             AI KSNCYH +GH A C+  +  +M  FG VQ+++SQ+P+FH + +LS+IAA+MSF+Y+ 
Sbjct:   140 AIGKSNCYHDKGHKAKCSVSNYPYMAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYAS 199

Query:    63 IGFGLGFAKVIEN--GR--IKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQ 118
             IG GL  A V     G+  + G++ GV     ++K+W  FQA+GDIAF+Y ++ IL+EIQ
Sbjct:   200 IGIGLAIATVASGKIGKTELTGTVIGVDVT-ASEKVWKLFQAIGDIAFSYAFTTILIEIQ 258

Query:   119 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLI 178
             DTL+S PPENK MK AS++ +  TT FY+ CGC GYAAFGN  PG+ LT FGFYEPYWLI
Sbjct:   259 DTLRSSPPENKVMKRASLVGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLI 318

Query:   179 DLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILR 238
             D ANACI LHL+G YQ+++QP F FVE    +K+P S F+N  Y+ K+PLL   RVN+ R
Sbjct:   319 DFANACIALHLIGAYQVYAQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLFR 378

Query:   239 LCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIV 298
             L +RT YVV TT VA+IFP+FN +LG+LGA  FWPL +YFPV M+  Q K+  ++R+W+ 
Sbjct:   379 LVWRTCYVVLTTFVAMIFPFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLA 438

Query:   299 LRTFSFICLLVT 310
             L     +CL+V+
Sbjct:   439 LNLLVLVCLIVS 450

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0006865 "amino acid transport" evidence=IGI

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
 Identities = 162/312 (51%), Positives = 227/312 (72%)

Query:     3 AIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSF 62
             A+ KSNC+H +GH A C   +  +M +FG +QV++SQIP+FH + +LS++AA+MSF Y+ 
Sbjct:   149 AVGKSNCFHDKGHTADCTISNYPYMAVFGIIQVILSQIPNFHKLSFLSIMAAVMSFTYAT 208

Query:    63 IGFGLGFAKVIENGRI-KGSIAGVPTA---NLADKLWLAFQALGDIAFAYPYSIILLEIQ 118
             IG GL  A V   G++ K S+ G         A K+W +FQA+GDIAFAY Y+ +L+EIQ
Sbjct:   209 IGIGLAIATVA-GGKVGKTSMTGTAVGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIEIQ 267

Query:   119 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLI 178
             DTL+S P ENK MK AS++ +  TTFFY+ CGC GYAAFGN+ PG+ LT FGF+EP+WLI
Sbjct:   268 DTLRSSPAENKAMKRASLVGVSTTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWLI 327

Query:   179 DLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILR 238
             D ANACI +HL+G YQ+F+QP+F FVE+   R YP + F+ + Y+  +P L    +++ R
Sbjct:   328 DFANACIAVHLIGAYQVFAQPIFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFR 387

Query:   239 LCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIV 298
             L +RTAYVV TT VA+IFP+FN +LG++GA +FWPL +YFPVEM+  Q KI  ++ +WI 
Sbjct:   388 LVWRTAYVVITTVVAMIFPFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIA 447

Query:   299 LRTFSFICLLVT 310
             L+T  ++CL+V+
Sbjct:   448 LKTMCYVCLIVS 459

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0009624 "response to nematode" evidence=IEP

GO:0043090 "amino acid import" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

GO:0015804 "neutral amino acid transport" evidence=IGI

TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
 Identities = 163/318 (51%), Positives = 222/318 (69%)

Query:     3 AIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSF 62
             AIQ+++C    G N PC      +M+ FG VQ++ SQIPDF  + WLS++AA+MSFAYS 
Sbjct:   140 AIQRTSCQQMNGPNDPCHVNGNVYMIAFGIVQIIFSQIPDFDQLWWLSIVAAVMSFAYSA 199

Query:    63 IGFGLGFAKVIENGRIKGSIAGVP--------TANLADKLWLAFQALGDIAFAYPYSIIL 114
             IG GLG +KV+EN  IKGS+ GV         T   + K+W  FQ+LG+IAFAY YS+IL
Sbjct:   200 IGLGLGVSKVVENKEIKGSLTGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSMIL 259

Query:   115 LEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEP 174
             +EIQDT+KSPP E  TM+ A+ +S+ +TT FY+ CGC GYAAFG++ PGNLL   GF  P
Sbjct:   260 IEIQDTVKSPPAEVNTMRKATFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNP 319

Query:   175 YWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLP--PL 232
             YWL+D+AN  IV+HLVG YQ++ QP+FAFVE+  +R++P S FV      K+ L P  P 
Sbjct:   320 YWLLDIANLAIVIHLVGAYQVYCQPLFAFVEKEASRRFPESEFVTK--EIKIQLFPGKPF 377

Query:   233 RVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAW 292
              +N+ RL +RT +V++TT ++++ P+FN V+G+LGA+ FWPL +YFPVEMY  QK +  W
Sbjct:   378 NLNLFRLVWRTFFVMTTTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRW 437

Query:   293 TRKWIVLRTFSFICLLVT 310
               KW+ L+  S  CL V+
Sbjct:   438 GTKWVCLQVLSVTCLFVS 455

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;TAS

GO:0016020 "membrane" evidence=ISS

GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IDA

GO:0015802 "basic amino acid transport" evidence=TAS

GO:0015809 "arginine transport" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 299 (110.3 bits), Expect = 6.2e-36, Sum P(2) = 6.2e-36
 Identities = 66/190 (34%), Positives = 104/190 (54%)

Query:    24 TKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIA 83
             T  +++F +V  V+SQ+P+F+++  +S+ AA+MS +YS I +G      ++ G++     
Sbjct:   154 TYFIMIFASVHFVLSQLPNFNSISGVSLAAAVMSLSYSTIAWGAS----VDKGKVADVDY 209

Query:    84 GVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPP--PENKTMKMASMISIFI 141
              +       K++  F ALGD+AFAY    ++LEIQ T+ S P  P  K M    +++  I
Sbjct:   210 HLRATTSTGKVFGFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKKPMWKGVVVAYII 269

Query:   142 TTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVF 201
                 Y      GY AFGN    N+L       P WLI LAN  +V+H++G YQI++ PVF
Sbjct:   270 VALCYFPVALVGYWAFGNHVDDNILITLS--RPKWLIALANMMVVIHVIGSYQIYAMPVF 327

Query:   202 AFVERWFTRK 211
               +E    +K
Sbjct:   328 DMIETVLVKK 337

GO:0009536 "plastid" evidence=IC

TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 7.0e-34, Sum P(2) = 7.0e-34
 Identities = 68/200 (34%), Positives = 101/200 (50%)

Query:    27 MLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVP 86
             +L FG V  ++SQ+P+F+++  +S+ AA+MS  YS I +G   A    +GR+        
Sbjct:   156 ILGFGGVHFILSQLPNFNSVAGVSLAAAVMSLCYSTIAWGGSIA----HGRVPDVSYDYK 211

Query:    87 TANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKM-ASMISIFITTFF 145
               N  D  +  F ALG I+FA+    + LEIQ T+ S P     + M   +I  ++    
Sbjct:   212 ATNPGDFTFRVFNALGQISFAFAGHAVALEIQATMPSTPERPSKVPMWQGVIGAYVVNAV 271

Query:   146 -YLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFV 204
              Y       Y AFG D   N+L       P WLI  AN  +V+H++G YQ+F+ PVF  +
Sbjct:   272 CYFPVALICYWAFGQDVDDNVL--MNLQRPAWLIAAANLMVVVHVIGSYQVFAMPVFDLL 329

Query:   205 ERWFTRKYP-SSGFVNNFYT 223
             ER    K+    G V  F+T
Sbjct:   330 ERMMVNKFGFKHGVVLRFFT 349

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FF99	AAP7_ARATH	No assigned EC number	0.6636	0.9969	0.6980	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	327
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	5e-57

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  189 bits (482), Expect = 5e-57
 Identities = 88/298 (29%), Positives = 135/298 (45%), Gaps = 22/298 (7%)

Query: 27  MLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVP 86
           +++FG + + +S IP+   +  LS++AA+ S     +        V E G +     G  
Sbjct: 130 IIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLS-----VAELGVLTAQGVGSL 184

Query: 87  TANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFY 146
            A    KL   F A+G I FA+    +LL IQ+T+KSP  + K M    + +I I T  Y
Sbjct: 185 GAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPS-KFKAMTKVLLTAIIIVTVLY 243

Query: 147 LCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVER 206
           +  G  GY AFGN+  GN+L         WLID+AN  +VLHL+  Y + + P+   VE 
Sbjct: 244 ILVGLVGYLAFGNNVKGNILLNLPK--SDWLIDIANLLLVLHLLLSYPLQAFPIRQIVEN 301

Query: 207 WFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVL 266
              RK       +  +  K  LL        R+  R+  VV T  +AI  P+    L ++
Sbjct: 302 LLFRK-----GASGKHNPKSKLL--------RVVIRSGLVVITYLIAISVPFLGDFLSLV 348

Query: 267 GALNFWPLAIYFPVEMYFVQKKI-GAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLIS 323
           GA +  PL    P   +   KK       K         IC+++ ++ +   + GLI 
Sbjct: 349 GATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG1305	411	consensus Amino acid transporter protein [Amino ac	99.97
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.71
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.11
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.68
PRK15132	403	tyrosine transporter TyrP; Provisional	98.33
PRK10483	414	tryptophan permease; Provisional	98.28
PRK09664	415	tryptophan permease TnaB; Provisional	98.2
TIGR00814	397	stp serine transporter. The HAAAP family includes	97.98
PRK11021	410	putative transporter; Provisional	97.9
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.87
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	97.86
PRK13629	443	threonine/serine transporter TdcC; Provisional	97.86
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	97.79
PRK10746	461	putative transport protein YifK; Provisional	97.77
PRK10644	445	arginine:agmatin antiporter; Provisional	97.7
PRK10655	438	potE putrescine transporter; Provisional	97.7
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	97.67
PRK15049	499	L-asparagine permease; Provisional	97.63
PRK11357	445	frlA putative fructoselysine transporter; Provisio	97.62
KOG1287	479	consensus Amino acid transporters [Amino acid tran	97.61
TIGR00909	429	2A0306 amino acid transporter.	97.56
PRK10197	446	gamma-aminobutyrate transporter; Provisional	97.56
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	97.51
TIGR00906	557	2A0303 cationic amino acid transport permease.	97.5
PRK10249	458	phenylalanine transporter; Provisional	97.43
TIGR00911	501	2A0308 L-type amino acid transporter.	97.43
PRK11387	471	S-methylmethionine transporter; Provisional	97.4
PRK10580	457	proY putative proline-specific permease; Provision	97.39
TIGR00913	478	2A0310 amino acid permease (yeast).	97.31
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	97.28
PRK10238	456	aromatic amino acid transporter; Provisional	97.22
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.21
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	97.18
PRK15238	496	inner membrane transporter YjeM; Provisional	97.13
TIGR00907	482	2A0304 amino acid permease (GABA permease).	96.99
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	96.99
PRK10836	489	lysine transporter; Provisional	96.88
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	96.84
TIGR00930	953	2a30 K-Cl cotransporter.	96.4
COG0531	466	PotE Amino acid transporters [Amino acid transport	96.15
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	95.75
TIGR00912	359	2A0309 spore germination protein (amino acid perme	94.75
PRK11375	484	allantoin permease; Provisional	93.91
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	92.76
KOG1286	554	consensus Amino acid transporters [Amino acid tran	92.36
KOG1289	550	consensus Amino acid transporters [Amino acid tran	91.92
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	90.91
COG0833	541	LysP Amino acid transporters [Amino acid transport	88.66
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	82.36

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-43  Score=339.61  Aligned_cols=292  Identities=37%  Similarity=0.637  Sum_probs=251.7

Q ss_pred             cccceecCCCCCCCCCCCchhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccccCC
Q 020386            6 KSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGV   85 (327)
Q Consensus         6 ~~~~~~~~~~~~~c~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   85 (327)
                      ...|.++..|.+++..+.+.|+++++++++|++++||+++++|+|..++++++.|..+.+++++.++.+.+..+.+... 
T Consensus       145 ~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~-  223 (437)
T KOG1303|consen  145 NLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLD-  223 (437)
T ss_pred             HHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCccc-
Confidence            3345555555444356678999999999999999999999999999999999999999999888887665322111111 


Q ss_pred             CCCChhhHHHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCccccc
Q 020386           86 PTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNL  165 (327)
Q Consensus        86 ~~~~~~~~~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~i  165 (327)
                        ..+...   .|+++|+++|||++|..+||||++||+|    ++|+|++..++.+++.+|+.+++.||++|||++++++
T Consensus       224 --~~~~~~---~f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~i  294 (437)
T KOG1303|consen  224 --LGTIPT---VFTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNI  294 (437)
T ss_pred             --CCCCcc---hhhhhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhh
Confidence              111111   1899999999999999999999999999    8899999999999999999999999999999999999


Q ss_pred             ccccCCCCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHH
Q 020386          166 LTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAY  245 (327)
Q Consensus       166 l~n~~~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~  245 (327)
                      +.|++  +|.|+...+++++.+|++.+|+++.+|.++.+|+....+.++  +.            + +....|...|+.+
T Consensus       295 l~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~~------------~-~~~~~R~~~Rt~~  357 (437)
T KOG1303|consen  295 LLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--FK------------K-RSLVLRLLVRTFF  357 (437)
T ss_pred             hhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--cc------------c-cccceeeehhhHH
Confidence            99996  589999999999999999999999999999999988765321  10            0 1246899999999


Q ss_pred             HHHHHHHHHhccchHHHHHHHhhhhhhhHHHHhhHHhhHhhcccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 020386          246 VVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTF-SFICLLVTIIGLIGSIEGLISA  324 (327)
Q Consensus       246 v~~~~~iA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~~~~~~~~~~~~~-~~~g~i~~v~gt~~si~~li~~  324 (327)
                      ++.+.++|+.+|+|+++++++||+...++++++|++||+.++|+++++.+|+.++.+ .++|.++++...++++++++.+
T Consensus       358 v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  358 VAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999988888 7999999999999999998864

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=5.4e-42  Score=323.60  Aligned_cols=267  Identities=16%  Similarity=0.230  Sum_probs=229.7

Q ss_pred             CCCchhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccccCCCCCChhhHHHHHHHH
Q 020386           21 YGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQA  100 (327)
Q Consensus        21 ~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (327)
                      .+.+.|+.+....++|++++||++.|+.+|++|++++++..++    ..++..++.+.   .++   .+...+..+++..
T Consensus       177 ~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~i----i~~y~~~~~~~---~~~---~~~~~~~~~~~lf  246 (449)
T KOG1304|consen  177 LSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVFILVGLAI----IMYYLVQDLPP---TSD---LPAVTGWSGLPLF  246 (449)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHH----HHHHHHhccCC---ccc---cccccchhhhHHH
Confidence            6889999999999999999999999999999999988874333    23333443321   111   1222233477888


Q ss_pred             HHHHHhhccCchhhHHHHhhcCCCCccccchh---hHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCchHH
Q 020386          101 LGDIAFAYPYSIILLEIQDTLKSPPPENKTMK---MASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWL  177 (327)
Q Consensus       101 ~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~---~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~  177 (327)
                      +|+.+|||+|++++.|++|+||+|    ++|.   +++..++.+++++|..+|++||++||+|+++.|+.|+|  + +++
T Consensus       247 ~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l  319 (449)
T KOG1304|consen  247 FGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EIL  319 (449)
T ss_pred             HHHHHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHH
Confidence            999999999999999999999999    9999   99999999999999999999999999999999999999  4 899


Q ss_pred             HHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHHHHHHHHHHHhcc
Q 020386          178 IDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFP  257 (327)
Q Consensus       178 ~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~vP  257 (327)
                      .+.+++++++.++.+|||+.+|+.+.+|+.+.+|..+.                 +.++....+|+.++++++.+|+++|
T Consensus       320 ~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~-----------------~~~~~~~~~R~~lVllt~~iA~~iP  382 (449)
T KOG1304|consen  320 SQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN-----------------RKKLLEYALRVFLVLLTFLIAVAVP  382 (449)
T ss_pred             HHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc-----------------hhHHHHHHHHHHHHHHHHHHHHHCC
Confidence            99999999999999999999999999999877653211                 1247788899999999999999999


Q ss_pred             chHHHHHHHhhhhhhhHHHHhhHHhhHhhcccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020386          258 YFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGA---WTRKWIVLRTFSFICLLVTIIGLIGSIEGL  321 (327)
Q Consensus       258 ~~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~~---~~~~~~~~~~~~~~g~i~~v~gt~~si~~l  321 (327)
                      +++++++|+||++++.+.+++|+++++..+.++.   +.++++.|..++++|++..+.|||.|+.++
T Consensus       383 nL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  383 NLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             cHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            9999999999999999999999999999965443   345777889999999999999999999864

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=3e-39  Score=315.55  Aligned_cols=277  Identities=15%  Similarity=0.162  Sum_probs=208.2

Q ss_pred             hhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccc--cCCCCCChhhHHHHHHHHHH
Q 020386           25 KHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSI--AGVPTANLADKLWLAFQALG  102 (327)
Q Consensus        25 ~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g  102 (327)
                      .+.+++.++++|++++|++++|+|+|.+|.++.+...+.+++....++..+...+.+.  .+..+........+++.++|
T Consensus       184 ~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~alg  263 (467)
T PTZ00206        184 LTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLG  263 (467)
T ss_pred             eeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhh
Confidence            3445667788999999999999999999876655433333223332222111000000  00000000111135789999


Q ss_pred             HHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCchHHHHHHH
Q 020386          103 DIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLAN  182 (327)
Q Consensus       103 i~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~~~~  182 (327)
                      +++|||.||.+.+|+++|||+|  +.+||.+++..++.++.++|..+|++||++||++++++++.|+++ ..+....+++
T Consensus       264 i~~faF~~h~~~~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~  340 (467)
T PTZ00206        264 VFIFAYVFQITAYEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGF  340 (467)
T ss_pred             HHHhhhhhhhhhHHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHH
Confidence            9999999999999999999997  459999999999999999999999999999999999999999942 2344566788


Q ss_pred             HHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHHHHHHHHHHHhccchHHH
Q 020386          183 ACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQV  262 (327)
Q Consensus       183 ~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~vP~~~~v  262 (327)
                      +++.+.+.++||++.+|+|+.+++.+..+  ..+         .+       .+++...+..++++++++|+++|+++.+
T Consensus       341 ~~~~~~v~~sypL~~~p~r~~i~~~~~~~--~~~---------~~-------~~~~~~~~~~l~~~~l~iAi~vP~l~~v  402 (467)
T PTZ00206        341 VGVLVKLFVSYALLGMACRNALYDVIGWD--ARK---------VA-------FWKHCIAVVTLSVVMLLCGLFIPKINTV  402 (467)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHhCCC--ccc---------Cc-------hhhHHHHHHHHHHHHHHHHhccCCHHHh
Confidence            88889999999999999999998876322  111         01       2445556677777889999999999999


Q ss_pred             HHHHhhhhhhhHHHHhhHHhhHhhc--ccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020386          263 LGVLGALNFWPLAIYFPVEMYFVQK--KIGA-WTRKWIVLRTFSFICLLVTIIGLIGSIEGLI  322 (327)
Q Consensus       263 ~~l~Ga~~~~~l~fi~P~l~yl~~~--k~~~-~~~~~~~~~~~~~~g~i~~v~gt~~si~~li  322 (327)
                      ++++||++++.++|++|+++|++..  +.++ ...+|..+++++++|++.+++||++|+++.+
T Consensus       403 l~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        403 LGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            9999999999999999999999842  2122 2224556788999999999999999999876

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=6e-38  Score=305.71  Aligned_cols=271  Identities=19%  Similarity=0.216  Sum_probs=215.8

Q ss_pred             CCCchhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccccCCCCCChhhHHHHHHHH
Q 020386           21 YGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQA  100 (327)
Q Consensus        21 ~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (327)
                      .+.+.|+++++++++|++++|++++++++|.+|..+++.+.+.++..++.++..        ++.+ .+...+....+.+
T Consensus       168 ~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~--------~~~~-~~~~~~~~~~f~~  238 (473)
T PLN03074        168 LDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQV--------EGVK-HSGPTKLVLYFTG  238 (473)
T ss_pred             cCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------CCCC-CCCchhHHHHHHH
Confidence            577899999999999999999999999999999887665433333333322211        1110 0112344467888


Q ss_pred             HHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCccc--ccccccCCCCchHHH
Q 020386          101 LGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPG--NLLTGFGFYEPYWLI  178 (327)
Q Consensus       101 ~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~--~il~n~~~~~~~~~~  178 (327)
                      +++++|||+||..+||+++|||||    ++|+++...++..++.+|..+|+.||++|||++++  +.+.|+|  ++ ...
T Consensus       239 ~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp--~~-~~~  311 (473)
T PLN03074        239 ATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP--RS-GWR  311 (473)
T ss_pred             HHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC--Cc-hHH
Confidence            899999999999999999999999    99999999999999999999999999999999864  5677787  23 346


Q ss_pred             HHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHHHHHHHHHHHhccc
Q 020386          179 DLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY  258 (327)
Q Consensus       179 ~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~vP~  258 (327)
                      +++++++.++++.+|+++..|+.+.+|+....+  +.                 +....|...|+.++++++++|+.+|+
T Consensus       312 ~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~~-----------------k~~~~r~~~R~~lv~~~~~iA~~IP~  372 (473)
T PLN03074        312 DAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--DT-----------------KSICLRALARLPVVVPIWFLAIIFPF  372 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--cc-----------------ccHHHHHHHHHHHHHHHHHHHHHccc
Confidence            788999999999999999999999999875321  10                 12367889999999999999999999


Q ss_pred             hHHHHHHHhhhhhhhHHHHhhHHhhHhhcccC-------------chhHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 020386          259 FNQVLGVLGALNFWPLAIYFPVEMYFVQKKIG-------------AWTRK--WIVLRTFSFICLLV-TIIGLIGSIEGLI  322 (327)
Q Consensus       259 ~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~-------------~~~~~--~~~~~~~~~~g~i~-~v~gt~~si~~li  322 (327)
                      |+++++|+||++++.++|++|+++|++.++++             .+.++  .+.|+.+++++.++ .+.|+|+|+++++
T Consensus       373 fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii  452 (473)
T PLN03074        373 FGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFV  452 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHH
Confidence            99999999999999999999999999875332             11122  25677777765566 4799999999999


Q ss_pred             hhhc
Q 020386          323 SAKL  326 (327)
Q Consensus       323 ~~~~  326 (327)
                      ++++
T Consensus       453 ~~~~  456 (473)
T PLN03074        453 RQID  456 (473)
T ss_pred             Hhhh
Confidence            9875

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=8.6e-37  Score=274.16  Aligned_cols=284  Identities=19%  Similarity=0.216  Sum_probs=241.8

Q ss_pred             CCCchhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccccCCCCCChhhHHHHHHHH
Q 020386           21 YGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQA  100 (327)
Q Consensus        21 ~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (327)
                      ++++.|+++.++.++|.+++|+++..+-+|++.++..++...+++.+|+....+....+-        ....+..+++.+
T Consensus       236 vd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv--------~Fsidi~~fPis  307 (524)
T KOG4303|consen  236 VDKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKV--------TFSIDINTFPIS  307 (524)
T ss_pred             ccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeE--------EEEEEcccCceE
Confidence            789999999999999999999999999999999999999888888888876544443221        223334467889


Q ss_pred             HHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCchHHHHH
Q 020386          101 LGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDL  180 (327)
Q Consensus       101 ~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~~~  180 (327)
                      +|+++|+|..|..+|+++.+|++|    ++|...+.++.+..+++...+|..||++||+++++.|.+|+|   ......+
T Consensus       308 vG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~  380 (524)
T KOG4303|consen  308 VGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKIL  380 (524)
T ss_pred             EEEEEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhh
Confidence            999999999999999999999999    999999999999999999999999999999999999999998   4446778


Q ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHHHHHHHHHHHhccchH
Q 020386          181 ANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFN  260 (327)
Q Consensus       181 ~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~vP~~~  260 (327)
                      +|+.++...+.|||+-.+...+.+|+-++...|+..|+.. |.   |   +-+.+.|.+.+|..+++.+.++|+++|+|.
T Consensus       381 VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpsc-ys---~---Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~  453 (524)
T KOG4303|consen  381 VNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSC-YS---P---DGSLKEWGLTLRIILVVFTLLMAISVPHFV  453 (524)
T ss_pred             hhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCcee-eC---C---CcchhhheeeeeeHHHHHHHHHHHHhHHHH
Confidence            9999999999999999988899999998877666655432 10   1   112335567899999999999999999999


Q ss_pred             HHHHHHhhhhhhhHHHHhhHHhhHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020386          261 QVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKL  326 (327)
Q Consensus       261 ~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~~~~~~~~~~~~~~~~g~i~~v~gt~~si~~li~~~~  326 (327)
                      .+++++|+++++.++|+.|++||++++.+..-..+...+..+++.|.++++.|.|.|..++|++++
T Consensus       454 ~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~  519 (524)
T KOG4303|consen  454 ELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAIN  519 (524)
T ss_pred             HHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHh
Confidence            999999999999999999999999996443222344456788889999999999999999999875

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=9.4e-37  Score=293.37  Aligned_cols=282  Identities=22%  Similarity=0.285  Sum_probs=217.5

Q ss_pred             CCCCchhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccccCCCCCChhhHHHHHHH
Q 020386           20 AYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQ   99 (327)
Q Consensus        20 ~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (327)
                      ..++..|.++.+++++|++++|+++++++.|.+|.++.+.+.++.+...... ...++.+.+.+.   .....+.++++.
T Consensus       121 ~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~  196 (409)
T PF01490_consen  121 FISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIYIISY-GPGEPSGVPSPP---VWPFISFSGFFS  196 (409)
T ss_pred             cccccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecceeeee-eccccccccccc---ccccchhhHHHH
Confidence            3567788888999999999999999999999999877664322222222221 111111111111   112344568999


Q ss_pred             HHHHHHhhccCchhhHHHHhhcCCCCccc-cchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCchHHH
Q 020386          100 ALGDIAFAYPYSIILLEIQDTLKSPPPEN-KTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLI  178 (327)
Q Consensus       100 ~~gi~~faf~~~~~~~~i~~~M~~p~p~~-~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~  178 (327)
                      ++|+++|||.||.++||+++|||+|  ++ ++++++...++.+++++|..+|+.||++||+++++|++.|+|  ++++..
T Consensus       197 ~~~i~~faf~~~~~~~~i~~~m~~~--~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~  272 (409)
T PF01490_consen  197 AFGIIIFAFSCHPNLPPIQSEMKDP--SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLI  272 (409)
T ss_pred             hhhhhhhhhhcccccceeeeeccCC--ccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--Cccccc
Confidence            9999999999999999999999998  33 345599999999999999999999999999999999999998  344677


Q ss_pred             HHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHHHHHHHHHHHhccc
Q 020386          179 DLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY  258 (327)
Q Consensus       179 ~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~vP~  258 (327)
                      .++++++.++++.+||++.+|.++.+|+.+.++.+..+...+    +     +.+.+++|...|+.+++.++++|..+|+
T Consensus       273 ~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~iA~~vp~  343 (409)
T PF01490_consen  273 IIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPK----N-----TPSSRWLRYLIRIILVLLSFLIAIFVPN  343 (409)
T ss_pred             ccccccchhhhhhccccccchhHhhhhhheeccccccccccc----c-----ccccceeeeeeecchhhhhhhhhhhccc
Confidence            899999999999999999999999999988753100010000    0     0123477899999999999999999999


Q ss_pred             hHHHHHHHhhhhhhhHHHHhhHHhhHhhcccCchhHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 020386          259 FNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWI-----VLRTFSFICLLVTIIGLIGSI  318 (327)
Q Consensus       259 ~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~~~~~~~~-----~~~~~~~~g~i~~v~gt~~si  318 (327)
                      ++++++++||++++.++|++|+++|++.+|+++++.+|.     .++.++++|++..+.|++.++
T Consensus       344 ~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  344 FGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             hhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            999999999999999999999999999987665433222     235566788888888888765

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=99.97  E-value=7.6e-31  Score=249.97  Aligned_cols=275  Identities=18%  Similarity=0.241  Sum_probs=216.0

Q ss_pred             hHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccccCCCCCChhhHHHHHHHHHHHHH
Q 020386           26 HMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIA  105 (327)
Q Consensus        26 ~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  105 (327)
                      |.++...+..||++.|+++++++.|.++.++.....+++++..    ..++....+...  ..+.....++.+.++|+++
T Consensus       131 ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~pi~~  204 (411)
T KOG1305|consen  131 ILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLVVYKY----FQGPCALGRLSY--LVPNLSSFSSLFYALPIFV  204 (411)
T ss_pred             eehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----HhcccccCCccc--ccCCcchhhhhhhhhhhhh
Confidence            5777788899999999999999999998776665443333322    221110011110  0122222268899999999


Q ss_pred             hhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCchH----HHHHH
Q 020386          106 FAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYW----LIDLA  181 (327)
Q Consensus       106 faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~~~----~~~~~  181 (327)
                      |||.||.+..++++|||||  +++++.++...+...+..+|..+|.+||+.||+++.+|++.++|...+..    ....+
T Consensus       205 faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~v  282 (411)
T KOG1305|consen  205 FAFTCHSNVFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCV  282 (411)
T ss_pred             eeeeccccceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHH
Confidence            9999999999999999998  78999999999999999999999999999999999999999998533322    35688


Q ss_pred             HHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHHHHHHHHHHHhccchHH
Q 020386          182 NACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQ  261 (327)
Q Consensus       182 ~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iA~~vP~~~~  261 (327)
                      +..+..+.+..+|+..+|++..++..+.+.+|+.+               +.++.++..+...++..+.+.|+.+|++++
T Consensus       283 r~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~---------------~~s~~r~~~itl~ll~~~~l~ai~~p~i~~  347 (411)
T KOG1305|consen  283 RLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLT---------------SFSGKRHFVITLLLLIFTFLLAIFVPSIGT  347 (411)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCC---------------CccceehhHHHHHHHHHHHHHHHHhccHHH
Confidence            99999999999999999999999888776543211               112355666777888999999999999999


Q ss_pred             HHHHHhhhhhhhHHHHhhHHhhHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020386          262 VLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAK  325 (327)
Q Consensus       262 v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~~~~~~~~~~~~~~~~g~i~~v~gt~~si~~li~~~  325 (327)
                      +.+++||++++.++|++|+++|++.+|.+.++  ....+.+.+++....+.|++.-+.++..+.
T Consensus       348 i~~~vGAT~~~~i~FI~P~~~yl~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~  409 (411)
T KOG1305|consen  348 IFGFVGATSSTSISFILPALYYLKASKKKSRE--PLGALIFLILGVLLSIIGVAVMIYDLLAKN  409 (411)
T ss_pred             HHHHhhhhhhhhhHHHHHHHhhheeecccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999997762222  222356778888888999988888877653

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.71  E-value=7.8e-16  Score=148.41  Aligned_cols=266  Identities=14%  Similarity=0.176  Sum_probs=174.2

Q ss_pred             CCCchhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccccCCCCCCh--hhHHHHHH
Q 020386           21 YGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANL--ADKLWLAF   98 (327)
Q Consensus        21 ~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~   98 (327)
                      .+.+.+.+++.+++.++++.++...+++.|.+.........++.    .+.....++.  ....   ++.  +....++.
T Consensus       126 ~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~----~~~~~~~~~~--~l~~---~~~~~~~~~~~~~  196 (415)
T COG0814         126 LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLV----VYLIPHWNPA--NLFA---LPSASQSFWKYLL  196 (415)
T ss_pred             cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH----HHHhcccCHH--HHhc---ccccchhhHHHHH
Confidence            56667788889999999999999999999988765554422222    2221111111  0111   111  13334788


Q ss_pred             HHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccccCCCCchHHH
Q 020386           99 QALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLI  178 (327)
Q Consensus        99 ~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n~~~~~~~~~~  178 (327)
                      .++|+++|||+||+++|++++|||++  ++++.+|+...+..+..++|..+++++|..+|+++.++++.+.+  +.+...
T Consensus       197 ~~ipv~vfsF~~h~~i~si~~~~~~~--~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~--~~~~~l  272 (415)
T COG0814         197 LAIPVFVFSFGFHGNIPSLVNYMRKN--SKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKE--QNISLL  272 (415)
T ss_pred             HHhhHHHhhhhCCccchHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccC--chHHHH
Confidence            99999999999999999999999987  33459999999999999999999999999999999999999997  333221


Q ss_pred             HHHHHHHHHHHHHhhhhccccHHHH--------------HHHHHhhhCCCCCcccccccccCCCCCCcccchhhHh--HH
Q 020386          179 DLANACIVLHLVGGYQIFSQPVFAF--------------VERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLC--FR  242 (327)
Q Consensus       179 ~~~~~~~~l~~~~sypl~~~p~~~~--------------le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~--~r  242 (327)
                       .+..........+++.+.++.+..              +++...+.  +++          +   .++..+.+..  ..
T Consensus       273 -~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~--~~~----------~---~r~~~~~~~~~~~~  336 (415)
T COG0814         273 -SALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKS--NSK----------P---GRKKTGLLTFLPPL  336 (415)
T ss_pred             -HHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhc--cCc----------c---cchhhhhhhHHHHH
Confidence             222233333335555555555433              33322210  000          0   0111122222  22


Q ss_pred             HHHHHHHHHHHHhccchHHHHHHHhhhhhhhHHHHhhHHhhHhhcccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 020386          243 TAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLI  315 (327)
Q Consensus       243 ~~~v~~~~~iA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~~~~~~~~~~~~~~~~g~i~~v~gt~  315 (327)
                      ...++.....+...|..+.+++.+|+.....+.+..|...+.+....+.+..++.....+.++|+...+.-.+
T Consensus       337 i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~  409 (415)
T COG0814         337 IFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFL  409 (415)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHH
Confidence            3455678888889999999999999999999999999998877743332222122344555666666554443

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.11  E-value=4.8e-09  Score=100.35  Aligned_cols=233  Identities=11%  Similarity=0.042  Sum_probs=145.2

Q ss_pred             chhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccccccCCCCCChhhHHHHHHHHHHH
Q 020386           24 TKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGD  103 (327)
Q Consensus        24 ~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  103 (327)
                      +.+.+++.+++.++.. +..+..+.++.+.....+....+.++.+..+. +.  .  .....  ........+.+.++++
T Consensus       115 ~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~-~~--~--~~~~~--~~~~~~~~~~~~a~~~  186 (381)
T TIGR00837       115 RAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKIIAFALVFSGLLPHV-KG--D--LLLDV--ALDTSYWPYILSALPV  186 (381)
T ss_pred             HHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cH--H--HHhcC--ccccccHHHHHHHHHH
Confidence            3344444445555544 44577777776655544433222222222211 10  0  00000  0001122367788899


Q ss_pred             HHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCccccccc----------ccCC-C
Q 020386          104 IAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLT----------GFGF-Y  172 (327)
Q Consensus       104 ~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~----------n~~~-~  172 (327)
                      ..++|++|.+++++.+|+++|   +|+.+|++..+..+++++|..+........+.+.-.+...          .+.. .
T Consensus       187 ~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~  263 (381)
T TIGR00837       187 CLTSFGFHGNVPSLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVL  263 (381)
T ss_pred             HHHHHHcccccHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhc
Confidence            999999999999999999854   3899999999999999999988766665554443211111          1110 0


Q ss_pred             CchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHHHHHHHHH
Q 020386          173 EPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAV  252 (327)
Q Consensus       173 ~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~i  252 (327)
                      ...+...++...-.+.+.+++.-.....+|.+++.+.+.. + +                   ..|.....+..+...++
T Consensus       264 ~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~-~-~-------------------~~~~~~~~~~~~~pl~~  322 (381)
T TIGR00837       264 KSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDD-S-K-------------------KGRFKTGLLTFLPPLVF  322 (381)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-c-c-------------------CCCchhhhhhHHhHHHH
Confidence            1233445666777777888887777777777776654421 0 0                   01222334445678888


Q ss_pred             HHhccchH-HHHHHHhhhhhhhHHHHhhHHhhHhhccc
Q 020386          253 AIIFPYFN-QVLGVLGALNFWPLAIYFPVEMYFVQKKI  289 (327)
Q Consensus       253 A~~vP~~~-~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~  289 (327)
                      |.+.|+.. ..++..| +.+..+.+++|++++++.||+
T Consensus       323 a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~  359 (381)
T TIGR00837       323 ALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK  359 (381)
T ss_pred             HHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            99999977 8999999 888999999999999998765

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.68  E-value=4.5e-06  Score=80.30  Aligned_cols=170  Identities=20%  Similarity=0.286  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhh--hhhhhc---------ccCCCccc
Q 020386           95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCC--GCFGYA---------AFGNDTPG  163 (327)
Q Consensus        95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~--g~~GY~---------~fG~~~~~  163 (327)
                      ...+.++|+.+++|+.|..+|++.+.+++.   ++|.+|++..+..+..++|+..  .+.|-.         .-|++..+
T Consensus       184 ~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~  260 (394)
T PF03222_consen  184 SYILPALPVLVFSFGFHNIVPSLVKYLGGD---PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSA  260 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHH
Confidence            366789999999999999999999999953   3889999999988888888765  223311         11111111


Q ss_pred             --ccccccCCCCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhH
Q 020386          164 --NLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCF  241 (327)
Q Consensus       164 --~il~n~~~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~  241 (327)
                        ..+.+..  +..+...++.+.-.+.+.+||-=...-.+|.+++.++.+  +.+                   ..|...
T Consensus       261 ~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~--~~~-------------------~~r~~~  317 (394)
T PF03222_consen  261 LVSALANVS--GSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLK--NNS-------------------SGRLKT  317 (394)
T ss_pred             HHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--ccc-------------------cchHHH
Confidence              1222222  223344456666666777777555566777777766431  110                   122222


Q ss_pred             HHHHHHHHHHHHHhccc-hHHHHHHHhhhhhhhHHHHhhHHhhHhhcccCc
Q 020386          242 RTAYVVSTTAVAIIFPY-FNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGA  291 (327)
Q Consensus       242 r~~~v~~~~~iA~~vP~-~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~~  291 (327)
                      -....+-..++|...|+ |-..+++.| ...+.+..++|+++.+|.||+++
T Consensus       318 ~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~  367 (394)
T PF03222_consen  318 WLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP  367 (394)
T ss_pred             HHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence            23334457888999997 889999999 99999999999999999976543

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.33  E-value=1.8e-05  Score=76.23  Aligned_cols=169  Identities=17%  Similarity=0.190  Sum_probs=115.8

Q ss_pred             HHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCc-----cc-----ccc
Q 020386           97 AFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT-----PG-----NLL  166 (327)
Q Consensus        97 ~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~-----~~-----~il  166 (327)
                      .+.++|++.+||+.|.++|++.+.+++.   .+|.+|++..+..+..++|+.-=......-+.+.     ++     +++
T Consensus       183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l  259 (403)
T PRK15132        183 ALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL  259 (403)
T ss_pred             HHHHHHHHHHHhhCCcccHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence            6788999999999999999999999863   3899999999999999988865444443333331     11     222


Q ss_pred             cccCC-CCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHH
Q 020386          167 TGFGF-YEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAY  245 (327)
Q Consensus       167 ~n~~~-~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~  245 (327)
                      ..+.. .+..+...++.+.-.+.+.+||-=.....+|.+++.++++. +                    ...|...-...
T Consensus       260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~-~--------------------~~~r~~~~~l~  318 (403)
T PRK15132        260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRN-T--------------------VGGRLQTGLIT  318 (403)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc-c--------------------ccCCchhehhh
Confidence            32221 02234555666666666777775555566777777654321 0                    01132333455


Q ss_pred             HHHHHHHHHhccc-hHHHHHHHhhhhhhhHHHHhhHHhhHhhcccC
Q 020386          246 VVSTTAVAIIFPY-FNQVLGVLGALNFWPLAIYFPVEMYFVQKKIG  290 (327)
Q Consensus       246 v~~~~~iA~~vP~-~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~  290 (327)
                      .+-..++|...|+ |...+++.|. ..+.+.+++|+++-++.+|.+
T Consensus       319 flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~  363 (403)
T PRK15132        319 FLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQN  363 (403)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcC
Confidence            5678899999998 8888999886 578999999999999987643

>PRK10483 tryptophan permease; Provisional

Probab=98.28  E-value=0.00012  Score=70.40  Aligned_cols=169  Identities=13%  Similarity=0.092  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCc------c-cc---c
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT------P-GN---L  165 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~------~-~~---i  165 (327)
                      ..+.++|+++++|+.|.++|++.+.+++.   .+|.+|++..+..+..++|+.-=......-+.+.      + +|   .
T Consensus       193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~d---~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L  269 (414)
T PRK10483        193 YLLMTLPFCLASFGYHGNVPSLMKYYGKD---PKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVL  269 (414)
T ss_pred             HHHHHHHHHHhhccCCCcchHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHH
Confidence            46788999999999999999999999863   2799999999999999999873222222222111      1 11   1


Q ss_pred             ccccCCC-CchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHH
Q 020386          166 LTGFGFY-EPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTA  244 (327)
Q Consensus       166 l~n~~~~-~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~  244 (327)
                      +..+... +..+...++.+.-.+.+.+||-=.....+|.+++.++.+  +++                   ..|...-..
T Consensus       270 ~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~--~~~-------------------~~r~~~~~l  328 (414)
T PRK10483        270 VQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFD--DSA-------------------MGRFKTALL  328 (414)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-------------------ccceeeehh
Confidence            1222110 122343455666666677777555566777777766542  110                   112112223


Q ss_pred             HHHHHHHHHHhccc-hHHHHHHHhhhhhhhHHHHhhHHhhHhhccc
Q 020386          245 YVVSTTAVAIIFPY-FNQVLGVLGALNFWPLAIYFPVEMYFVQKKI  289 (327)
Q Consensus       245 ~v~~~~~iA~~vP~-~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~  289 (327)
                      ..+=..++|...|+ |=..+++.|.. ++.+.-++|+++.++.||+
T Consensus       329 tflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  373 (414)
T PRK10483        329 TFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR  373 (414)
T ss_pred             hHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence            44568889999998 88899999976 6677789999999999875

>PRK09664 tryptophan permease TnaB; Provisional

Probab=98.20  E-value=0.00021  Score=68.85  Aligned_cols=169  Identities=13%  Similarity=0.102  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhh--hhhhhc---------ccCCCcccc
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCC--GCFGYA---------AFGNDTPGN  164 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~--g~~GY~---------~fG~~~~~~  164 (327)
                      ..+.++|++.++|+.|.++|++.+.+++.   .++.+|++..+..+..++|++.  .+.|-.         +-|+++.+.
T Consensus       194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d---~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l  270 (415)
T PRK09664        194 YIFMALPVCLASFGFHGNIPSLIICYGKR---KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL  270 (415)
T ss_pred             HHHHHHHHHHHhhhCCCcchHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH
Confidence            46778999999999999999999998853   3788888888888888888543  222211         122222221


Q ss_pred             cccccCCCCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHH
Q 020386          165 LLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTA  244 (327)
Q Consensus       165 il~n~~~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~  244 (327)
                      +..-....+..+...++.+...+.+.+||-=.....+|.+.+.++.+  +++                   ..|...-..
T Consensus       271 ~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~--~~~-------------------~~r~~~~~l  329 (415)
T PRK09664        271 VKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKID--NSH-------------------GGRFKTVLL  329 (415)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--Ccc-------------------ccceeeehh
Confidence            11111101234455566666666777777555566777777766432  111                   112112223


Q ss_pred             HHHHHHHHHHhccc-hHHHHHHHhhhhhhhHHHHhhHHhhHhhccc
Q 020386          245 YVVSTTAVAIIFPY-FNQVLGVLGALNFWPLAIYFPVEMYFVQKKI  289 (327)
Q Consensus       245 ~v~~~~~iA~~vP~-~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~  289 (327)
                      ..+-..+.|...|+ |=..+++.|.. ++.+.-++|+++-++.||+
T Consensus       330 tflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  374 (415)
T PRK09664        330 TFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK  374 (415)
T ss_pred             hHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            44567889999998 88899999996 6688889999999999875

>TIGR00814 stp serine transporter

Probab=97.98  E-value=0.00019  Score=69.09  Aligned_cols=178  Identities=10%  Similarity=0.027  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHhhccCchhhHHHHhh----cCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcc-----ccc
Q 020386           95 WLAFQALGDIAFAYPYSIILLEIQDT----LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTP-----GNL  165 (327)
Q Consensus        95 ~~~~~~~gi~~faf~~~~~~~~i~~~----M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~-----~~i  165 (327)
                      .+...++++..+||.+|..+++...+    .++|....+|.+|++..+..+..++|+..-+..-...+++.-     +|+
T Consensus       186 ~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~ni  265 (397)
T TIGR00814       186 KTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNI  265 (397)
T ss_pred             HHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCc
Confidence            46788999999999999999999733    332211247889999999999999888776666666655431     121


Q ss_pred             --ccccCCC-CchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhh-CCCCCcccccccccCCCCCCcccchhhHhH
Q 020386          166 --LTGFGFY-EPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRK-YPSSGFVNNFYTFKLPLLPPLRVNILRLCF  241 (327)
Q Consensus       166 --l~n~~~~-~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~  241 (327)
                        +..+... +..+...+..+.-.+.+..||-=.....+|.+++...+. .++++..              +.+......
T Consensus       266 s~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~--------------~~~~~~~~~  331 (397)
T TIGR00814       266 SILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKI--------------NIRKLNRAI  331 (397)
T ss_pred             HHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccccccc--------------CHHHHHHHH
Confidence              2211100 112333334444445566666666677888888877321 1111100              112333344


Q ss_pred             HHHHHHHHHHHHHhccchHHHHHHHhhhhhhhHHHHhhHHhhHhh
Q 020386          242 RTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQ  286 (327)
Q Consensus       242 r~~~v~~~~~iA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~yl~~  286 (327)
                      -....+.+...|+.=|++-++++-+|+-....+.|++|...-.|.
T Consensus       332 ~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v  376 (397)
T TIGR00814       332 AIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV  376 (397)
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence            456667899999999999999997788888889999999877766

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK11021 putative transporter; Provisional

Probab=97.90  E-value=0.0053  Score=59.34  Aligned_cols=55  Identities=20%  Similarity=0.385  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhh
Q 020386           95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF  152 (327)
Q Consensus        95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~  152 (327)
                      .++..++....|+|.|-......-+|+|||   +|+.+|++..+...+.++|......
T Consensus       177 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~k~iPrAi~~~~~~~~~lYil~~~~  231 (410)
T PRK11021        177 SGLFAALGVMFWCFVGIEAFAHLASEFKNP---ERDFPRALMIGLLLAGLVYWACTVV  231 (410)
T ss_pred             HHHHHHHHHHHHHHhcHHHHHhhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHH
Confidence            467788899999999999999999999998   3789999999999999999987654

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.87  E-value=0.0032  Score=62.15  Aligned_cols=54  Identities=13%  Similarity=0.080  Sum_probs=44.3

Q ss_pred             HHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCC
Q 020386          103 DIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGN  159 (327)
Q Consensus       103 i~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~  159 (327)
                      .+.|+|.|-......-+|+|||   +|+.+|++..+...+.++|....+.-...-++
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~  255 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNP---DKNYPIAILIAALGTVLIFVLGTLAIAFIIPR  255 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence            4578999999999999999998   47899999999999999998766554444433

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=97.86  E-value=0.0032  Score=62.00  Aligned_cols=59  Identities=7%  Similarity=0.028  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccC
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFG  158 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG  158 (327)
                      ++..++....|+|.|-.....+-+|.|++    |+.+|++..+...+.++|..+.+..+...+
T Consensus       196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~  254 (468)
T TIGR03810       196 QVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT  254 (468)
T ss_pred             HHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            45577888999999999988888999976    999999999999999999988876655444

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=97.86  E-value=0.0026  Score=61.59  Aligned_cols=177  Identities=11%  Similarity=0.049  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCC-----Ccc--ccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCc-----cc
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSP-----PPE--NKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT-----PG  163 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p-----~p~--~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~-----~~  163 (327)
                      ....++|+++|+|+-|..+|++...+|+.     .++  .+|-+|++..+..+..++|+..-+..-.+-+++.     ++
T Consensus       210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q  289 (443)
T PRK13629        210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ  289 (443)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            46788999999999999999998884321     012  4888999999999999988877665555554433     11


Q ss_pred             cc--ccc----cCCC-Cc-----hHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhh-h-CCCCCcccccccccCCCC
Q 020386          164 NL--LTG----FGFY-EP-----YWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTR-K-YPSSGFVNNFYTFKLPLL  229 (327)
Q Consensus       164 ~i--l~n----~~~~-~~-----~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~-~-~~~~~~~~~~~~~~~p~~  229 (327)
                      |+  +..    ++.. +.     .+...+..+...+.+..||-=.....+|.++....+ . .++++..           
T Consensus       290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~-----------  358 (443)
T PRK13629        290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKV-----------  358 (443)
T ss_pred             CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-----------
Confidence            22  222    2210 00     123334444445556667655556778888887742 1 1111100           


Q ss_pred             CCcccchhhHhHHHHHHHHHHHHHHhccchHHHHHHHhhhhhhhHHHHhhHHhhHhh
Q 020386          230 PPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQ  286 (327)
Q Consensus       230 ~~~~~~~~r~~~r~~~v~~~~~iA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~yl~~  286 (327)
                         +.+..+........+.++..|+.=|++-++++-+|+-....+.|++|...-.|.
T Consensus       359 ---~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kv  412 (443)
T PRK13629        359 ---SLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKA  412 (443)
T ss_pred             ---CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHcc
Confidence               112334445556677899999999999999998888888899999999877766

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=97.79  E-value=0.0038  Score=60.43  Aligned_cols=59  Identities=22%  Similarity=0.267  Sum_probs=51.2

Q ss_pred             HHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCC
Q 020386           97 AFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGND  160 (327)
Q Consensus        97 ~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~  160 (327)
                      .+.+++...|+|.|-.......+|+||     |+.+|++..+..++.++|......-....+++
T Consensus       190 ~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~  248 (426)
T PF13520_consen  190 FLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPDD  248 (426)
T ss_dssp             HHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHC
T ss_pred             hhhHHHHHHhhcccccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccch
Confidence            467788899999999999999999875     78999999999999999999877666666554

...

>PRK10746 putative transport protein YifK; Provisional

Probab=97.77  E-value=0.0067  Score=59.69  Aligned_cols=60  Identities=17%  Similarity=0.097  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhccc
Q 020386           95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAF  157 (327)
Q Consensus        95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~f  157 (327)
                      .++..++....|+|.|-......-+|+|||   +|+.+|++..+.....++|.......-...
T Consensus       200 ~g~~~~~~~~~faf~G~e~v~~~a~E~knP---~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~  259 (461)
T PRK10746        200 KGFLTALCIVVASYQGVELIGITAGEAKNP---QVTLRSAVGKVLWRILIFYVGAIFVIVTIF  259 (461)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHeeee
Confidence            366788899999999999999999999998   478999999888888888887544433333

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=97.70  E-value=0.012  Score=57.60  Aligned_cols=56  Identities=11%  Similarity=0.130  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhh
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGY  154 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY  154 (327)
                      .+..++....|+|.|-......-+|+|||   +|+.+|++..+..++.++|..+.+.-.
T Consensus       192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P---~r~iPrai~~s~~i~~v~Y~l~~~~~~  247 (445)
T PRK10644        192 AIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSSTAIM  247 (445)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhCc---ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566778999999999999999999999   378999999999999999998876533

>PRK10655 potE putrescine transporter; Provisional

Probab=97.70  E-value=0.017  Score=56.25  Aligned_cols=56  Identities=9%  Similarity=0.069  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhh
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGY  154 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY  154 (327)
                      ++..++....|+|.|-......-+|+|||   +|+.+|++..+..+..++|.+......
T Consensus       190 ~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iPrAi~~~~~~~~~~Y~l~~~~~~  245 (438)
T PRK10655        190 AVGSSIAMTLWAFLGLESACANSDAVENP---ERNVPIAVLGGTLGAAVIYIVSTNVIA  245 (438)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHhhCc---cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667788999999999999999999998   378999999999999999988765443

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=97.67  E-value=0.019  Score=56.07  Aligned_cols=61  Identities=13%  Similarity=0.130  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhccc
Q 020386           94 LWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAF  157 (327)
Q Consensus        94 ~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~f  157 (327)
                      ..++..++....|+|.|-......-+|+|||   +|+.+|++..+...+.++|....+.-....
T Consensus       186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP---~r~iPrAi~~~~~iv~ilYil~~~~~~~~~  246 (435)
T PRK10435        186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNP---KRTVPLATMLGTGLAGIIYIAATQVISGMF  246 (435)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4577888899999999999999999999998   368999999999999999998876554433

>PRK15049 L-asparagine permease; Provisional

Probab=97.63  E-value=0.011  Score=58.67  Aligned_cols=61  Identities=15%  Similarity=0.155  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccC
Q 020386           95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFG  158 (327)
Q Consensus        95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG  158 (327)
                      ...+.++....|+|.|-......-+|+|||   +++.+|++..+.....++|...........+
T Consensus       220 ~~~~~~~~~~~faf~G~e~i~~~aeE~knP---~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p  280 (499)
T PRK15049        220 LPALVLIQGVVFAFASIEMVGTAAGECKDP---QTMVPKAINSVIWRIGLFYVGSVVLLVMLLP  280 (499)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHheecc
Confidence            345666778999999999999999999999   3679999999888888888876655444443

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=97.62  E-value=0.011  Score=57.77  Aligned_cols=56  Identities=16%  Similarity=0.202  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhh
Q 020386           95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFG  153 (327)
Q Consensus        95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G  153 (327)
                      .++..++....|+|.|-......-+|+|||   +|+.+|++..+..++.++|.......
T Consensus       195 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iP~Ai~~~~~i~~~~Y~l~~~~~  250 (445)
T PRK11357        195 MALLAGISATSWSYTGMASICYMTGEIKNP---GKTMPRALIGSCLLVLVLYTLLALVI  250 (445)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhhHHHhcCc---cccchHHHHHHHHHHHHHHHHHHHHH
Confidence            356778889999999999999999999998   37899999999999999998876543

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.61  E-value=0.0046  Score=60.23  Aligned_cols=251  Identities=14%  Similarity=0.107  Sum_probs=133.4

Q ss_pred             CCCCCCchhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHHH---HHHHhhhhhhhhhhhcCCccccccCCCCCChhhHH
Q 020386           18 PCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFA---YSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKL   94 (327)
Q Consensus        18 ~c~~~~~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (327)
                      .|..++..-..+.++.+.. .-..|..++++.+.+-.+++..   ...++++.+++...+++..+.+.+..+  ..+.+.
T Consensus       127 ~c~~p~~~~~lla~~~l~~-lt~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~--g~~~~~  203 (479)
T KOG1287|consen  127 LCDVPRVASKLLAAALLVL-LTLINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFE--GSDTDV  203 (479)
T ss_pred             CCCCchHHHHHHHHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccc--cCcCch
Confidence            3665544444444444444 4556777788776654444432   222333344443333322111111010  011111


Q ss_pred             HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccc------
Q 020386           95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTG------  168 (327)
Q Consensus        95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n------  168 (327)
                      -+.-.++=.-.|||.|=..+=.+-+|+|||   +|++++++..++.+++++|..+=+..+..--.|.   ++.+      
T Consensus       204 g~i~lafysglfa~~GWd~lN~vteEiknP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e---~l~S~aVav~  277 (479)
T KOG1287|consen  204 GNIALAFYSGLFAFSGWDYLNYVTEEIKNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDE---ILSSDAVAVT  277 (479)
T ss_pred             HHHHHHHHHhhhcccCchhhccchHhhcCc---cccchHHHHHhhHHHHHHHHHhHhheeEecCHHH---hcccchHHHH
Confidence            234455556789999999999999999999   5889999999999999999999877666543322   2211      


Q ss_pred             cCC-CCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHHHHHH
Q 020386          169 FGF-YEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVV  247 (327)
Q Consensus       169 ~~~-~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~~~v~  247 (327)
                      +.. ..+.+. -.+-++..++.+++.--.++-.-..+...-+    ++..++.-..++     .++... +  ....+..
T Consensus       278 Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~ar----eG~LP~~~s~i~-----~~~~TP-~--~allf~~  344 (479)
T KOG1287|consen  278 FADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAR----EGHLPAFFSMIS-----VRRFTP-R--PALLFSG  344 (479)
T ss_pred             HHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH----ccCccHHHHhhc-----CCCCCC-h--HHHHHHH
Confidence            110 001121 2333444444444432112111111111111    111100000000     000001 1  2223444


Q ss_pred             HHHHHHHhccchHHHHHHHhhhhhhhHHHHhhHHhhHhhcccC
Q 020386          248 STTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIG  290 (327)
Q Consensus       248 ~~~~iA~~vP~~~~v~~l~Ga~~~~~l~fi~P~l~yl~~~k~~  290 (327)
                      +..++...+.|++++++.++=.-.....+.+=+++|+|.++++
T Consensus       345 ~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~  387 (479)
T KOG1287|consen  345 LLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP  387 (479)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            5566666777999999999998888899999999999998765

>TIGR00909 2A0306 amino acid transporter

Probab=97.56  E-value=0.014  Score=56.68  Aligned_cols=57  Identities=16%  Similarity=0.217  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhc
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYA  155 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~  155 (327)
                      +...++....|+|.|........+|+|||   +|+.+|++..+..+..++|.........
T Consensus       196 ~~~~~~~~~~~af~G~e~~~~~~~E~~~p---~r~ip~ai~~~~~~~~v~Yil~~~~~~~  252 (429)
T TIGR00909       196 GVGAATALVFFAFIGFEAISTAAEEVKNP---ERDIPKAIILSLIVVTLLYVLVAAVILG  252 (429)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56778889999999999999999999998   3789999999999999999988755443

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=97.56  E-value=0.021  Score=55.91  Aligned_cols=55  Identities=20%  Similarity=0.244  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhh
Q 020386           95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF  152 (327)
Q Consensus        95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~  152 (327)
                      .++..++....|+|.|-......-+|+|||   +|+.+|++..+.....++|....+.
T Consensus       181 ~~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPrai~~~~~~i~i~Yil~~~~  235 (446)
T PRK10197        181 GAVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRATNSVIWRISIFYLCSIFV  235 (446)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            367888999999999999999999999998   3679999999999999999886554

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=97.51  E-value=0.033  Score=54.90  Aligned_cols=59  Identities=5%  Similarity=-0.026  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhccc
Q 020386           95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAF  157 (327)
Q Consensus        95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~f  157 (327)
                      ..+..++....|+|.|-......-+|+||+    |+.+|++..+..++.++|...........
T Consensus       199 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~~----r~iPrai~~~~~i~~~~Yil~~~~~~~~~  257 (473)
T TIGR00905       199 SQVKNTMLVTLWVFIGIEGAVVSSGRAKNK----SDVGKATVLGTLGALVIYILITLLSLGVL  257 (473)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcc----ccchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            356778888999999999999999999985    99999999999999999988776544333

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=97.50  E-value=0.012  Score=59.32  Aligned_cols=57  Identities=11%  Similarity=0.121  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhh
Q 020386           95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGY  154 (327)
Q Consensus        95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY  154 (327)
                      .+++.+.....|+|.|-......-+|+|||   +++.+|++..+..+++++|..+.+.--
T Consensus       231 ~g~l~g~~~~~faf~Gfd~v~~~aeE~knP---~r~iP~aii~sl~i~~vlY~lv~~~l~  287 (557)
T TIGR00906       231 TGVLSGAATCFFAFIGFDAIATTGEEVKNP---QRAIPIGIVTSLLVCFVAYFLMSAALT  287 (557)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            467888899999999999999999999999   367999999999999999998865543

>PRK10249 phenylalanine transporter; Provisional

Probab=97.43  E-value=0.039  Score=54.20  Aligned_cols=55  Identities=15%  Similarity=0.152  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhh
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFG  153 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G  153 (327)
                      ++..++....|+|.|-......-+|+|||   +|+.+|++..+.....++|......-
T Consensus       210 ~~~~~~~~~~~af~G~e~~~~~a~E~~~P---~k~iPrai~~~~~~~~~~y~~~~~~~  264 (458)
T PRK10249        210 GLILSLAVIMFSFGGLELIGITAAEARDP---EKSIPKAVNQVVYRILLFYIGSLVVL  264 (458)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788899999999999999999999998   37899999999999999997754443

>TIGR00911 2A0308 L-type amino acid transporter

Probab=97.43  E-value=0.017  Score=57.45  Aligned_cols=61  Identities=23%  Similarity=0.225  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhccc
Q 020386           94 LWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAF  157 (327)
Q Consensus        94 ~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~f  157 (327)
                      ..++..++....|+|.|-.......+|+|||   +|+.+|++..+..++.++|.+..+.-....
T Consensus       234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~  294 (501)
T TIGR00911       234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNP---YRTLPIAIIISMPIVTFIYVLTNIAYFTVL  294 (501)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCc---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3467778889999999999999999999998   378999999999999999999865543333

>PRK11387 S-methylmethionine transporter; Provisional

Probab=97.40  E-value=0.047  Score=53.81  Aligned_cols=61  Identities=13%  Similarity=0.118  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccC
Q 020386           95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFG  158 (327)
Q Consensus        95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG  158 (327)
                      .+.+.++....|+|.|-......-+|+|||   +|+.+|++..+.....++|....+..-...+
T Consensus       206 ~~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p  266 (471)
T PRK11387        206 LPILMTMVAVNFAFSGTELIGIAAGETENP---AKVIPVAIRTTIARLVIFFVGTVLVLAALIP  266 (471)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence            456777788899999999999999999999   3689999999999999999887654433333

>PRK10580 proY putative proline-specific permease; Provisional

Probab=97.39  E-value=0.051  Score=53.35  Aligned_cols=54  Identities=20%  Similarity=0.118  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhh
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF  152 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~  152 (327)
                      +...++....|+|.|-......-+|+|||   +|+.+|++..+.....++|......
T Consensus       200 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~k~iPrAi~~~~~~~~~~y~~~~~~  253 (457)
T PRK10580        200 GMVMSLQMVMFAYGGIEIIGITAGEAKDP---EKSIPRAINSVPMRILVFYVGTLFV  253 (457)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66778889999999999999999999999   3679999988877778888766543

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=97.31  E-value=0.14  Score=50.49  Aligned_cols=56  Identities=13%  Similarity=0.158  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhh
Q 020386           94 LWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF  152 (327)
Q Consensus        94 ~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~  152 (327)
                      ..++..++....|+|.|-......-+|+|||   +|+.+|++..+.....++|....+.
T Consensus       196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP---~r~iPrai~~~~~~~~~~Y~l~~~~  251 (478)
T TIGR00913       196 FKGVCSVFVTAAFSFGGTELVALTAGEAANP---RKSIPRAAKRTFWRILVFYILTLFL  251 (478)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467778888999999999999999999998   3789999999999999999987543

>TIGR00908 2A0305 ethanolamine permease

Probab=97.28  E-value=0.044  Score=53.44  Aligned_cols=54  Identities=9%  Similarity=-0.031  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhh
Q 020386           95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGC  151 (327)
Q Consensus        95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~  151 (327)
                      .+++.++....|+|.|.......-+|+|||   +++.+|++..+..++..+|...-.
T Consensus       191 ~~~~~~~~~~~~af~G~e~~~~~aeE~k~P---~r~iprai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       191 VGVFAAIPFAIWFFLAVEGVAMAAEETKNP---KRDIPRGLIGAILTLLALAAGILV  244 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---ccccCHHHHHHHHHHHHHHHHHHH
Confidence            367778888899999999999999999998   368999999999888888876644

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK10238 aromatic amino acid transporter; Provisional

Probab=97.22  E-value=0.035  Score=54.55  Aligned_cols=51  Identities=14%  Similarity=0.180  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhh
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCC  149 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~  149 (327)
                      ++..+++...|+|.|-......-+|+|||   +|+.+|++..+.....+.|...
T Consensus       201 ~~~~~~~~~~~af~G~e~~~~~aeE~knP---~r~iPrAi~~~~~~i~~~y~~~  251 (456)
T PRK10238        201 GLVMMMAIIMFSFGGLELVGITAAEADNP---EQSIPKATNQVIYRILIFYIGS  251 (456)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHH
Confidence            55667788999999999999999999998   3679999988877777777654

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.21  E-value=0.083  Score=52.69  Aligned_cols=50  Identities=12%  Similarity=0.099  Sum_probs=41.4

Q ss_pred             HHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhh
Q 020386           98 FQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCG  150 (327)
Q Consensus        98 ~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g  150 (327)
                      ...+..+.|+|.|-......-+|+|||   +|+++|++..+..+..++|....
T Consensus       197 ~~~~~~~~faf~G~E~~a~~a~E~knP---~r~~PrAi~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       197 LVVFVAFIGAYMGVEASASHINELENP---GRDYPLAMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHccCC---cccccHHHHHHHHHHHHHHHHHH
Confidence            334444689999999999999999999   37899999999998888887644

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=97.18  E-value=0.072  Score=52.49  Aligned_cols=57  Identities=16%  Similarity=0.089  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhc
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYA  155 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~  155 (327)
                      +++.++....|+|.|-......-+|+|||   +|+.+|++..+.....++|......-+.
T Consensus       212 ~~~~~~~~~~~af~G~e~~~~~a~E~knP---~r~iPrai~~~~~~~~~~y~l~~~~~~~  268 (469)
T PRK11049        212 GFFAGFQIAVFAFVGIELVGTTAAETKDP---EKSLPRAINSIPIRIIMFYVFALIVIMS  268 (469)
T ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence            57888999999999999999999999998   3679999987777778888766655443

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=97.13  E-value=0.15  Score=50.65  Aligned_cols=54  Identities=15%  Similarity=0.129  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhh
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF  152 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~  152 (327)
                      +...++....|+|.|-......-+|+|||   +++.+|++..+...+..+|....++
T Consensus       212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p---~~~~p~ai~~~~~~~~~~y~l~~~~  265 (496)
T PRK15238        212 AVLSFVVFAIFAYGGIEAVGGLVDKTENP---EKNFPKGIIIAAIVISIGYSLAIFL  265 (496)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhccCC---CccccHHHHHHHHHHHHHHHHHHHH
Confidence            45666777899999999999999999998   3789999999999999999876443

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=96.99  E-value=0.14  Score=50.54  Aligned_cols=60  Identities=12%  Similarity=0.083  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccC
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFG  158 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG  158 (327)
                      ....++....|+|.|-......-+|+|||   +|+.+|++..+..+..+++....+.-+...+
T Consensus       218 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~  277 (482)
T TIGR00907       218 AFLLGLLNPAWSMTGYDGTAHMAEEIENP---EVVGPRAIIGAVAIGIVTGFCFNIVLFFSMG  277 (482)
T ss_pred             hhhhhhhhhHHHhcCcchhhHHHHhcCCh---hhhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            45555666789999999999999999998   4789999999887766554443333333333

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=96.99  E-value=0.15  Score=49.85  Aligned_cols=60  Identities=18%  Similarity=0.135  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccC
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFG  158 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG  158 (327)
                      ++..++....|+|.|-......-+|+|||   +|+.+|++..+......+|...........+
T Consensus       202 ~~~~a~~~~~~af~G~e~~~~~a~E~k~P---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p  261 (452)
T TIGR01773       202 AVLLAILVTMFSFMGTEIVTIAAAESSNP---IKSITRATNSVIWRIIVFYLGSIFIVVALLP  261 (452)
T ss_pred             HHHHHHHHHHHHhccHHHHhHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHeeEeC
Confidence            57888999999999999999999999998   3689999988888888888876544333333

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10836 lysine transporter; Provisional

Probab=96.88  E-value=0.29  Score=48.50  Aligned_cols=59  Identities=10%  Similarity=0.072  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhccc
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAF  157 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~f  157 (327)
                      ..+.+.....|+|.|-......-+|+|||   +|+.+|++..+...+.++|......-....
T Consensus       206 ~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~v  264 (489)
T PRK10836        206 AMIGVAMIVGFSFQGTELIGIAAGESEDP---AKNIPRAVRQVFWRILLFYVFAILIISLII  264 (489)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence            34444555679999999999999999998   378999999999999999998765444443

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=96.84  E-value=0.065  Score=51.83  Aligned_cols=181  Identities=12%  Similarity=0.143  Sum_probs=95.9

Q ss_pred             hhHHHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHh-----hhhhhhhhcccCCCccccc
Q 020386           91 ADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFY-----LCCGCFGYAAFGNDTPGNL  165 (327)
Q Consensus        91 ~~~~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y-----~~~g~~GY~~fG~~~~~~i  165 (327)
                      +....+++.++-+.+|||++.-.+=.--.|-|||+   +..+|+.+.-..=..++|     .++.+.-+-.++++.++-+
T Consensus       199 P~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV  275 (462)
T COG1113         199 PNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFV  275 (462)
T ss_pred             CCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHH
Confidence            34445888999999999999999888999999992   556676654444444444     4566667777777666533


Q ss_pred             --ccccCCCCchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhhhCCCCCcccccccccCCCCCCcccchhhHhHHH
Q 020386          166 --LTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRT  243 (327)
Q Consensus       166 --l~n~~~~~~~~~~~~~~~~~~l~~~~sypl~~~p~~~~le~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~r~~~r~  243 (327)
                        ...++.  | ....+.|..+....+.+.-=-.+..-.++..+-.+.. ..+...+-.+.+.|        ..-+...+
T Consensus       276 ~~f~~iGi--~-~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~-APk~~~klsk~gVP--------~~ai~~s~  343 (462)
T COG1113         276 TVFSLIGI--P-FAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGD-APKAFAKLSKRGVP--------VNAILLSA  343 (462)
T ss_pred             HHHHHcCC--c-ccccceeEEEeechhhcccccccccchHHHHHhhcCc-ccHhHhhccccCCC--------HHHHHHHH
Confidence              333331  1 1222333322222222221111122223333221110 00111100001122        33455666


Q ss_pred             HHHHHHHHHHHhccchHHHHHHHhhhhhhhHH--HHhhHHhhHhhcc
Q 020386          244 AYVVSTTAVAIIFPYFNQVLGVLGALNFWPLA--IYFPVEMYFVQKK  288 (327)
Q Consensus       244 ~~v~~~~~iA~~vP~~~~v~~l~Ga~~~~~l~--fi~P~l~yl~~~k  288 (327)
                      ...++..++....|  +.+..++=+.++..+.  ..+=.+.|+|.+|
T Consensus       344 ~~~~~~V~Lny~~P--~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk  388 (462)
T COG1113         344 VVLLLGVVLNYILP--EKVFELVTSSSGLGLLFVWLMILLSQLKLRK  388 (462)
T ss_pred             HHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77778888889999  6666665555444333  3344456777776

>TIGR00930 2a30 K-Cl cotransporter

Probab=96.40  E-value=1.4  Score=47.41  Aligned_cols=53  Identities=23%  Similarity=0.300  Sum_probs=46.6

Q ss_pred             HHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhh
Q 020386           97 AFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF  152 (327)
Q Consensus        97 ~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~  152 (327)
                      ++..++++.+||.|-.....+-.|+|+|   +++.++++..+..+++++|+++.+.
T Consensus       282 f~~~~ai~F~A~tGi~agan~sgElKnP---~r~IPratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       282 FFSLFGIFFPSVTGILAGANISGDLKDP---QKAIPKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCh---hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5666788888999988999999999999   3789999999999999999998763

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=96.15  E-value=1.4  Score=42.79  Aligned_cols=61  Identities=16%  Similarity=0.225  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCC
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGN  159 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~  159 (327)
                      ....++....++|.|-......-+|+|||   +++.+|++..+...+.++|......-....++
T Consensus       202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp---~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         202 GILAAILLAFFAFTGFEAIATLAEEVKNP---KRTIPRAIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            57788889999999999999999999998   36689999999999999999988877777765

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=95.75  E-value=2.3  Score=41.91  Aligned_cols=60  Identities=8%  Similarity=-0.150  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccC
Q 020386           96 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFG  158 (327)
Q Consensus        96 ~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG  158 (327)
                      .+..+.....|+|.|-.....+-+|+|||   +|+.+|++..+..+..++|...-+......+
T Consensus       214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP---~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~  273 (475)
T TIGR03428       214 AFLVSGLMAAYVMVGFGSAGELSEETKNP---RRVAPRTILTALSVSALGGGLMILGALMAAP  273 (475)
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHhcCc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            45556667789999999999999999999   4789999999998887766555444343334

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=94.75  E-value=2.3  Score=40.18  Aligned_cols=57  Identities=19%  Similarity=0.330  Sum_probs=48.8

Q ss_pred             HHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcc
Q 020386          102 GDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTP  162 (327)
Q Consensus       102 gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~  162 (327)
                      ....++|.+.....-...++|+|    ++.+|+...+..+...+|...-+..-..+|.+..
T Consensus       186 ~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~  242 (359)
T TIGR00912       186 PVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVT  242 (359)
T ss_pred             HHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHHh
Confidence            36788998888888888999987    8999999999999999999888887888876543

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PRK11375 allantoin permease; Provisional

Probab=93.91  E-value=7.4  Score=38.63  Aligned_cols=63  Identities=8%  Similarity=0.231  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHhhcc-CchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhh----hcccCCCc
Q 020386           95 WLAFQALGDIAFAYP-YSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFG----YAAFGNDT  161 (327)
Q Consensus        95 ~~~~~~~gi~~faf~-~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G----Y~~fG~~~  161 (327)
                      +.+..++...+=++. .-.+.+..-+-.|+|    ++-.+.-..++.+...+...+|+..    ...||...
T Consensus       227 ~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~  294 (484)
T PRK11375        227 FLFLVVINAVVAVWAAPAVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADT  294 (484)
T ss_pred             HHHHHHHHHHHHHHHHHHccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            344333433333333 334777888888876    5544444445555544443334332    34666543

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=92.76  E-value=0.38  Score=47.45  Aligned_cols=65  Identities=23%  Similarity=0.200  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCc
Q 020386           94 LWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT  161 (327)
Q Consensus        94 ~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~  161 (327)
                      ..+++.++....++|.|-......-+|.|||   +|+.+|+...+.....++|.......=...|.+.
T Consensus       199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P---~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~  263 (478)
T PF00324_consen  199 FSGFFAALVFAFFAFVGFESIAILAEEAKNP---RKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDN  263 (478)
T ss_pred             hhHHHHhhhhhhcccccccccccccccCCCc---hhhhhhHhhhhhhhhhhhhhhhhhhcccccCccc
Confidence            3478899999999999999999999999999   4789999999999999999887765555555443

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=92.36  E-value=6.4  Score=39.75  Aligned_cols=56  Identities=14%  Similarity=0.192  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhh
Q 020386           94 LWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF  152 (327)
Q Consensus        94 ~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~  152 (327)
                      +.+++.++-+..|+|.|--.+-.--+|-|||   +|..++++..++..++.+|....+.
T Consensus       231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP---~k~IP~ai~~s~~ri~~~Yi~~~~~  286 (554)
T KOG1286|consen  231 FKGVLSGAATAFFSFIGFELVATTAEEAKNP---RKAIPKAIKQSLLRILLFYILSSIV  286 (554)
T ss_pred             cceeeHHHHHHHHHHhhHHHHHHHHHhccCC---cccccHHHHHHHHHHHHHHHHHHHH
Confidence            3467888899999999999999999999998   3789999999999999999987654

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=91.92  E-value=10  Score=37.80  Aligned_cols=73  Identities=12%  Similarity=-0.025  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCcccccccc
Q 020386           93 KLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTG  168 (327)
Q Consensus        93 ~~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~~~~il~n  168 (327)
                      +-|.+..++-.-+..+.|--.-..+-+|-||+   +++-+|++..+..+..++=..+-+.-..+-++|.....-.+
T Consensus       250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nA---sk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~  322 (550)
T KOG1289|consen  250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNA---SKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSS  322 (550)
T ss_pred             chHHHHHhhccceeEEeccCchHHHHHHhcch---hhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCC
Confidence            34566666777777788888888899999997   36788888777776666655555555556665444333333

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=90.91  E-value=16  Score=35.15  Aligned_cols=45  Identities=13%  Similarity=0.272  Sum_probs=32.1

Q ss_pred             hhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCC
Q 020386          112 IILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGND  160 (327)
Q Consensus       112 ~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~  160 (327)
                      ...++..+-.|+|    ++..+....+..+...+-..+|...-.+.|+.
T Consensus       190 ~~~~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~  234 (386)
T TIGR02358       190 PLIADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT  234 (386)
T ss_pred             HHccchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3467777777776    76666667777777788888887776666653

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=88.66  E-value=28  Score=34.84  Aligned_cols=120  Identities=13%  Similarity=0.146  Sum_probs=72.8

Q ss_pred             CCCchhHHHHHHHHHHHh--cCCCcchhh-HHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc---ccc-ccCCCCCChhhH
Q 020386           21 YGDTKHMLLFGAVQVVMS--QIPDFHNME-WLSVIAAIMSFAYSFIGFGLGFAKVIENGRI---KGS-IAGVPTANLADK   93 (327)
Q Consensus        21 ~~~~~~~~i~~~v~~pl~--~~~~l~~L~-~~S~~~~v~~~~~~~i~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~   93 (327)
                      .+...|..++.++++.+.  -.|-+.+.. |+|.+=++..+.+.++.++ ....+..++..   ++- .++    .....
T Consensus       158 v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii-~~~Gg~~~~~~ig~~yw~~pg----~F~~g  232 (541)
T COG0833         158 VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGII-IICGGGPTHGYIGFNYWHDPG----AFAGG  232 (541)
T ss_pred             CChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHH-HhcCCCCCCCCcceeeecCCC----CCCcc
Confidence            356678888888777666  456666666 4455544444443333322 12222222110   000 011    12233


Q ss_pred             HHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhh
Q 020386           94 LWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLC  148 (327)
Q Consensus        94 ~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~  148 (327)
                      +.++...+-+..|+|.|.-.+----.|-+||   +|..+|+++..+.=...+|+.
T Consensus       233 f~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP---~K~iPkAik~vfwRIl~FYi~  284 (541)
T COG0833         233 FKGFCSVFVIAAFSFSGTELVGLAAGESENP---RKSIPKAIKQVFWRILLFYIL  284 (541)
T ss_pred             hHHHHHHHhhheeeeeceeeeeeeecccCCc---hhhhHHHHHHHHHHHHHHHHH
Confidence            4577777888999999988888888899998   367888888777777777753

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=82.36  E-value=51  Score=32.13  Aligned_cols=49  Identities=18%  Similarity=0.143  Sum_probs=32.7

Q ss_pred             cCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcc----cCCCc
Q 020386          109 PYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAA----FGNDT  161 (327)
Q Consensus       109 ~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~----fG~~~  161 (327)
                      ..-.+.+...+.+|+|    ++-.+....++.........+|+.+-.+    +|+..
T Consensus       222 s~~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~  274 (442)
T TIGR00800       222 TWATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY  274 (442)
T ss_pred             HHHcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            3445778888889886    5554556666666666666777766655    77653

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	327
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.36
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	97.95
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	97.9
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	85.03

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.36  E-value=2e-05  Score=75.07  Aligned_cols=63  Identities=11%  Similarity=0.101  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCC
Q 020386           95 WLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGND  160 (327)
Q Consensus        95 ~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~  160 (327)
                      .+++.++....|+|.|........+|+|||   +|+.+|++..+.....++|....+.-....+.+
T Consensus       191 ~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          191 GAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNA  253 (445)
T ss_dssp             --HHHHHHHHHHTTTTTTHHHHGGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            467788899999999999999999999998   377999999999999999999887766666554

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=97.95  E-value=0.00044  Score=65.70  Aligned_cols=63  Identities=17%  Similarity=0.187  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCC
Q 020386           94 LWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGN  159 (327)
Q Consensus        94 ~~~~~~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~  159 (327)
                      ..+++.+++...|+|.|........+|+|||   +|+.+|++..+.....++|....+......+.
T Consensus       187 ~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~  249 (444)
T 3gia_A          187 VSGMIFASAIFFLSYMGFGVITNASEHIENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLPI  249 (444)
T ss_dssp             HHHHHHHHHHGGGGGTHHHHHHTTGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCH
T ss_pred             hHHHHHHHHHHHHHHHhHHHHHHHHHHccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            3467788888899999999999999999998   35699999999999999999887765555543

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=97.90  E-value=0.00052  Score=66.41  Aligned_cols=60  Identities=7%  Similarity=0.042  Sum_probs=51.5

Q ss_pred             HHHHHHHhhccCchhhHHHHhhcCCCCccccchhhHHHHHHHHHHHHhhhhhhhhhcccCCCc
Q 020386           99 QALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT  161 (327)
Q Consensus        99 ~~~gi~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~~  161 (327)
                      .++....|+|.|.......-+|+|||   +++.+|++..+..+..++|....+.-....+++.
T Consensus       205 ~~~~~~~~a~~G~e~~~~~a~E~k~P---~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~  264 (511)
T 4djk_A          205 VVFVAFILSYMGVEASATHVNEMSNP---GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNE  264 (511)
T ss_dssp             TTHHHHHHHHTTGGGGTGGGSSSSCC---TTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTS
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhh
Confidence            34667899999999999999999998   3779999999999999999998887776666543

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=85.03  E-value=24  Score=33.70  Aligned_cols=34  Identities=26%  Similarity=0.548  Sum_probs=21.8

Q ss_pred             chhHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHH
Q 020386           24 TKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSF   58 (327)
Q Consensus        24 ~~~~~i~~~v~~pl~~~~~l~~L~~~S~~~~v~~~   58 (327)
                      ..+.++++++.++..+. -++.++++..++....+
T Consensus       143 ~v~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p~~~  176 (501)
T 2jln_A          143 PLWIVIFGAIQVVTTFY-GITFIRWMNVFASPVLL  176 (501)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHH
Confidence            34556677777777744 47888877766544433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00