Citrus Sinensis ID: 020388

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------
Protein Sequence
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFSASILSQDKSS
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccEEEEcccccccccccHHHHHHHHHHHHccccccEEEEcccEEEccccccccccccccHHHHHHHHHHHcccEEEEEcccccccccccccccccEEcccccHHHHHHHHHccccccccccHHHHHHccccEEEccccccccccEEEEccccccccccccccccEEEEEEEccEEEEEEEcccccccccHHHHHHHHHHHccccEEEEEcccccEEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcEEEcccHHHHHHHHHHHHHHccccEEEEcccEEEEEEcccccccccccHHHHHHHHHHHccccccEEEEEEEEEEcccccEEEccccccHHHHHHHHHHHcccEEEEEEccccEEcccccccccccccccccHHHHHHHHHHcccccccccHHHHHHccccEEEEEccccccccEEEEccccccHHHHHHHcccEEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEcHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccc
Coil and Loop (DISEMBL)
MFQVRNYVSELSYEFIRSTYNFlsnvdsghatesfTDFVVGHGELWSAQMLAAVVRKNgidckwmdtrevlivnptssnqvdpdfseSEKRLEKWfsqspsntiiatgfiastpdnipttlkrdgsdFSAAIMGALLRAHQVtiwtdvdgvysadprkVSEAVILRTLSYQEAWEMSYFganvlhprtiipvmrydipIVIRNifnlsvpgimicrppvdenedeqiidspvkgfatiDNLALVNvegtgmagvpgtaNAIFGAVKDVGANVIMISQASsehsvcfavpEKEVKAVAEALESKFREALNAGRLSQFSASILSQDKSS
Flexible Loop (DISEMBL)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLivnptssnqvdpdFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRealnagrlsqfsasilsqdkss
Low Complexity Region (SEG)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFavpekevkavaealeskFREALNAGRLSQFSASILSQDKSS
Disordered region (IsUnstruct)
***VRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN***************************NTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVA******************************
Disordered Region (DISOPRED)
MFQ*RNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVD*****QIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFSASILSQD***
Disordered Region (DISEMBL)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN**************KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFSA*********
Disordered Region (DISPRO)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFSASILSQ****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFSASILSQDKSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	327	2.2.26 [Sep-21-2011]
P37142	921	Bifunctional aspartokinas	N/A	no	0.951	0.337	0.781	1e-144
O81852	916	Bifunctional aspartokinas	yes	no	0.917	0.327	0.793	1e-144
Q9SA18	911	Bifunctional aspartokinas	no	no	0.874	0.313	0.840	1e-144
P49079	920	Bifunctional aspartokinas	N/A	no	0.871	0.309	0.802	1e-138
P49080	917	Bifunctional aspartokinas	N/A	no	0.871	0.310	0.774	1e-133
P27725	819	Bifunctional aspartokinas	N/A	no	0.825	0.329	0.378	2e-50
P00561	820	Bifunctional aspartokinas	N/A	no	0.856	0.341	0.372	1e-48
Q57991	473	Probable aspartokinase OS	yes	no	0.810	0.560	0.392	1e-45
P57290	816	Bifunctional aspartokinas	yes	no	0.877	0.351	0.331	5e-44
P44505	815	Bifunctional aspartokinas	yes	no	0.764	0.306	0.394	3e-42

>sp|P37142|AKH_DAUCA Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic (Fragment) OS=Daucus carota PE=1 SV=1

 Score =  513 bits (1320), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/311 (78%), Positives = 272/311 (87%)

Query: 7   YVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD 66
           +++ L ++ I       +   +GHATESF+DFVVGHGELWSAQ+L+ V+RKNG DC WMD
Sbjct: 178 FLTRLQHDVITLKAMLRAIYIAGHATESFSDFVVGHGELWSAQLLSFVIRKNGGDCNWMD 237

Query: 67  TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126
           TR+VL+VNP  SNQVDPD+ ESEKRLEKWFS +   TI+ATGFIASTP NIPTTLKRDGS
Sbjct: 238 TRDVLVVNPAGSNQVDPDYLESEKRLEKWFSSNQCQTIVATGFIASTPQNIPTTLKRDGS 297

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           DFSAAIMGALLRA QVTIWTDV+GVYSADPRKVSEAV+L+TLSYQEAWEMSYFGANVLHP
Sbjct: 298 DFSAAIMGALLRAGQVTIWTDVNGVYSADPRKVSEAVVLKTLSYQEAWEMSYFGANVLHP 357

Query: 187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV 246
           RTI PVMRYDIPIVIRNIFNLS PG MICR  V E ED   ++S VKGFATIDNLAL+NV
Sbjct: 358 RTINPVMRYDIPIVIRNIFNLSAPGTMICRESVGETEDGLKLESHVKGFATIDNLALINV 417

Query: 247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306
           EGTGMAGVPGTA AIFGAVKDVGANVIMISQASSEHS+CFAVPE EVKAVA+ALE++FR+
Sbjct: 418 EGTGMAGVPGTATAIFGAVKDVGANVIMISQASSEHSICFAVPESEVKAVAKALEARFRQ 477

Query: 307 ALNAGRLSQFS 317
           AL+AGRLSQ +
Sbjct: 478 ALDAGRLSQVA 488

Daucus carota (taxid: 4039)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3

>sp|O81852|AKH2_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH2 PE=1 SV=1

 Score =  510 bits (1313), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 246/310 (79%), Positives = 273/310 (88%), Gaps = 10/310 (3%)

Query: 15  FIRSTYNFLSNVDS--------GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD 66
           F+   +N +SN+ +        GHA+ESF+DFV GHGELWSAQML+ VVRK G++CKWMD
Sbjct: 175 FLSHLHNDISNLKAMLRAIYIAGHASESFSDFVAGHGELWSAQMLSYVVRKTGLECKWMD 234

Query: 67  TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126
           TR+VLIVNPTSSNQVDPDF ESEKRL+KWFS +PS  IIATGFIASTP NIPTTLKRDGS
Sbjct: 235 TRDVLIVNPTSSNQVDPDFGESEKRLDKWFSLNPSKIIIATGFIASTPQNIPTTLKRDGS 294

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           DFSAAIMGALLRA QVTIWTDVDGVYSADPRKV+EAVIL+TLSYQEAWEMSYFGANVLHP
Sbjct: 295 DFSAAIMGALLRARQVTIWTDVDGVYSADPRKVNEAVILQTLSYQEAWEMSYFGANVLHP 354

Query: 187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV 246
           RTIIPVMRY+IPIVIRNIFNLS PG +IC+PP  E++ +  + +PVKGFATIDNLAL+NV
Sbjct: 355 RTIIPVMRYNIPIVIRNIFNLSAPGTIICQPP--EDDYDLKLTTPVKGFATIDNLALINV 412

Query: 247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306
           EGTGMAGVPGTA+ IFG VKDVGANVIMISQASSEHSVCFAVPEKEV AV+EAL S+F E
Sbjct: 413 EGTGMAGVPGTASDIFGCVKDVGANVIMISQASSEHSVCFAVPEKEVNAVSEALRSRFSE 472

Query: 307 ALNAGRLSQF 316
           AL AGRLSQ 
Sbjct: 473 ALQAGRLSQI 482

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9SA18|AKH1_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH1 PE=1 SV=1

 Score =  510 bits (1313), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 242/288 (84%), Positives = 265/288 (92%), Gaps = 2/288 (0%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQMLAAVVRK+G+DC WMD R+VL+V PTSSNQVDPDF E
Sbjct: 191 AGHATESFSDFVVGHGELWSAQMLAAVVRKSGLDCTWMDARDVLVVIPTSSNQVDPDFVE 250

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLEKWF+Q+ +  IIATGFIASTP NIPTTLKRDGSDFSAAIM AL R+HQ+TIWTD
Sbjct: 251 SEKRLEKWFTQNSAKIIIATGFIASTPQNIPTTLKRDGSDFSAAIMSALFRSHQLTIWTD 310

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAV+L+TLSYQEAWEMSYFGANVLHPRTIIPVM+YDIPIVIRNIFNL
Sbjct: 311 VDGVYSADPRKVSEAVVLKTLSYQEAWEMSYFGANVLHPRTIIPVMKYDIPIVIRNIFNL 370

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MICR    ++ED   +D+PVKGFATIDNLALVNVEGTGMAGVPGTA+AIF AVK+
Sbjct: 371 SAPGTMICRQI--DDEDGFKLDAPVKGFATIDNLALVNVEGTGMAGVPGTASAIFSAVKE 428

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ 315
           VGANVIMISQASSEHSVCFAVPEKEVKAV+EAL S+FR+AL  GRLSQ
Sbjct: 429 VGANVIMISQASSEHSVCFAVPEKEVKAVSEALNSRFRQALAGGRLSQ 476

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P49079|AKH1_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Zea mays GN=AKHSDH1 PE=2 SV=1

 Score =  490 bits (1261), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 231/288 (80%), Positives = 260/288 (90%), Gaps = 3/288 (1%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQML+  ++K+G  C WMDTREVL+VNP+ +NQVDPD+ E
Sbjct: 201 AGHATESFSDFVVGHGELWSAQMLSYAIQKSGTPCSWMDTREVLVVNPSGANQVDPDYLE 260

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLEKWFS+ P+ TIIATGFIASTP+NIPTTLKRDGSDFSAAI+G+L++A QVTIWTD
Sbjct: 261 SEKRLEKWFSRCPAETIIATGFIASTPENIPTTLKRDGSDFSAAIIGSLVKARQVTIWTD 320

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGV+SADPRKVSEAVIL TLSYQEAWEMSYFGANVLHPRTIIPVM+Y+IPIVIRNIFN 
Sbjct: 321 VDGVFSADPRKVSEAVILSTLSYQEAWEMSYFGANVLHPRTIIPVMKYNIPIVIRNIFNT 380

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MIC+ P +EN D   +++ VK FATID LALVNVEGTGMAGVPGTANAIFGAVKD
Sbjct: 381 SAPGTMICQQPANENGD---LEACVKAFATIDKLALVNVEGTGMAGVPGTANAIFGAVKD 437

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ 315
           VGANVIMISQASSEHSVCFAVPEKEV  V+ AL ++FREAL AGRLS+
Sbjct: 438 VGANVIMISQASSEHSVCFAVPEKEVALVSAALHARFREALAAGRLSK 485

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P49080|AKH2_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Zea mays GN=AKHSDH2 PE=2 SV=1

 Score =  473 bits (1217), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 223/288 (77%), Positives = 252/288 (87%), Gaps = 3/288 (1%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQML+  ++K+G  C WMDTREVL+V P+  NQVDPD+ E
Sbjct: 198 AGHATESFSDFVVGHGELWSAQMLSYAIKKSGAPCSWMDTREVLVVTPSGCNQVDPDYLE 257

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
            EKRL+KWFS+ P+  I+ATGFIAST  NIPTTLKRDGSDFSAAI+G+L+RA QVTIWTD
Sbjct: 258 CEKRLQKWFSRQPAEIIVATGFIASTAGNIPTTLKRDGSDFSAAIVGSLVRARQVTIWTD 317

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGV+SADPRKVSEAVIL TLSYQEAWEMSYFGANVLHPRTIIPVM+ +IPIVIRN+FNL
Sbjct: 318 VDGVFSADPRKVSEAVILSTLSYQEAWEMSYFGANVLHPRTIIPVMKDNIPIVIRNMFNL 377

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MIC+ P +EN D   +D+ VK FAT+DNLALVNVEGTGMAGVPGTA+AIF AVKD
Sbjct: 378 SAPGTMICKQPANENGD---LDACVKSFATVDNLALVNVEGTGMAGVPGTASAIFSAVKD 434

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ 315
           VGANVIMISQASSEHSVCFAVPEKEV  V+  L  +FREAL AGRLS+
Sbjct: 435 VGANVIMISQASSEHSVCFAVPEKEVAVVSAELHDRFREALAAGRLSK 482

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P27725|AK1H_SERMA Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Serratia marcescens GN=thrA PE=3 SV=1

 Score =  199 bits (506), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 110/291 (37%), Positives = 159/291 (54%), Gaps = 21/291 (7%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G   +S    ++  GE  S  ++  V R  G          V ++NP         + ES
Sbjct: 112 GQCPDSVNAAIICRGEKLSIAIMEGVFRAKGY--------PVTVINPVEKLLAQGHYLES 163

Query: 89  -----EKRLEKWFSQSPSNTII-ATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQV 142
                E  L    +  P++ I+   GF A         L R+GSD+SAA++ A LRA   
Sbjct: 164 TVDIAESTLRIAAAAIPADHIVLMAGFTAGNDKGELVVLGRNGSDYSAAVLAACLRADCC 223

Query: 143 TIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIR 202
            IWTDVDGVY+ DPR V +A +L+++SYQEA E+SYFGA VLHPRTI P+ ++ IP +I+
Sbjct: 224 EIWTDVDGVYTCDPRTVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIK 283

Query: 203 NIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIF 262
           N  N   PG +I +   D        D PVKG   ++N+A++NV G GM G+ G A  +F
Sbjct: 284 NTSNPQAPGTLIGKDSTDA-------DMPVKGITNLNNMAMINVSGPGMKGMVGMAARVF 336

Query: 263 GAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRL 313
             +   G +V++I+Q+SSE+S+ F VP+ E++    ALE +F   L  G L
Sbjct: 337 AVMSRAGISVVLITQSSSEYSISFCVPQGELQRARRALEEEFYLELKDGVL 387

Serratia marcescens (taxid: 615)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P00561|AK1H_ECOLI Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Escherichia coli (strain K12) GN=thrA PE=1 SV=2

 Score =  193 bits (491), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 109/293 (37%), Positives = 169/293 (57%), Gaps = 13/293 (4%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLI-VNPTSSNQVDPDFSE 87
           G   +S    ++  GE  S  ++A V+   G +   +D  E L+ V     + VD   +E
Sbjct: 112 GQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVD--IAE 169

Query: 88  SEKRLEKWFSQSPSN-TIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
           S +R+    S+ P++  ++  GF A         L R+GSD+SAA++ A LRA    IWT
Sbjct: 170 STRRIAA--SRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWT 227

Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DVDGVY+ DPR+V +A +L+++SYQEA E+SYFGA VLHPRTI P+ ++ IP +I+N  N
Sbjct: 228 DVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGN 287

Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
              PG +I       +EDE     PVKG + ++N+A+ +V G GM G+ G A  +F A+ 
Sbjct: 288 PQAPGTLI---GASRDEDEL----PVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMS 340

Query: 267 DVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFSAS 319
               +V++I+Q+SSE+S+ F VP+ +      A++ +F   L  G L   + +
Sbjct: 341 RARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAVT 393

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q57991|AK_METJA Probable aspartokinase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0571 PE=1 SV=1

 Score =  183 bits (465), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/278 (39%), Positives = 154/278 (55%), Gaps = 13/278 (4%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  T    D+++  GE  S+ +L+  +R  G     ++  E  I+   +         E 
Sbjct: 115 GELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV 174

Query: 89  EKRLEKWFSQS--PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
           ++RL     +   P    + TGFI +T +   TTL R GSD+SAA++G  L A  + IWT
Sbjct: 175 KERLLPLLKEGIIP----VVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 230

Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DV GVY+ DPR V  A  +  LSY EA E++YFGA VLHPRTI P M   IPI+++N F 
Sbjct: 231 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 290

Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
               G +I         D ++ DS VK  +TI N+AL+N+ G GM GV GTA  IF A+ 
Sbjct: 291 PESEGTLITN-------DMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALG 343

Query: 267 DVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF 304
           +   NVI+ISQ SSE ++   V E++V    +AL+ +F
Sbjct: 344 EEEVNVILISQGSSETNISLVVSEEDVDKALKALKREF 381

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 4

>sp|P57290|AKH_BUCAI Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=thrA PE=3 SV=1

 Score =  178 bits (452), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 106/320 (33%), Positives = 172/320 (53%), Gaps = 33/320 (10%)

Query: 20  YNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN 74
           +N L N+  G        ++    ++  GE+ S  ++ ++++    +        V I+N
Sbjct: 98  FNELKNIIQGILLLKQCPDNIRAIIISRGEILSVFIMKSILQSKNYN--------VTIIN 149

Query: 75  PTSS------NQVDP--DFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126
           P  +      N +D   D SES+K ++   + + SN I+  GFIA   D     L R+GS
Sbjct: 150 PVKNLVAIGDNYLDSTVDISESKKNIQNM-NINQSNIILMAGFIAGNKDKKLVVLGRNGS 208

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D+SAA++ A L A+   IWTDVDGV+++DPRKV  A +L+++SYQEA E+SYFGA VLHP
Sbjct: 209 DYSAAVLAACLDANCCEIWTDVDGVFTSDPRKVPNARLLKSISYQEAMELSYFGAKVLHP 268

Query: 187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV 246
           RTI P+ ++ IP +I+N  N+   G +IC     E +        +KG   +D +A+ N+
Sbjct: 269 RTIEPIAQFKIPCLIKNTNNVKSIGTLICEQNCSEKD-------FLKGVTHLDEIAMFNI 321

Query: 247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306
            G  +  V    + IF  +      +++I+Q+SSE+ + F V E ++  +      +F+ 
Sbjct: 322 SGPHIKDVGSVISRIFTMMSRGNIKILLITQSSSENKINFCVYEHDIYKILYLFNKEFQL 381

Query: 307 ALNAGRLSQF----SASILS 322
            L  G L+ F    + SILS
Sbjct: 382 ELKDGLLNPFKIKKNLSILS 401

Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P44505|AKH_HAEIN Bifunctional aspartokinase/homoserine dehydrogenase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=thrA PE=3 SV=1

 Score =  172 bits (436), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/276 (39%), Positives = 151/276 (54%), Gaps = 26/276 (9%)

Query: 57  KNGIDCK-----------WMDTR--EVLIVNPTSSNQVDPDFSESEKRLEKWFSQ----- 98
           K  IDC+           W + R   V IV+P         + ES   +E+   +     
Sbjct: 119 KATIDCRGEKLSIAMMKAWFEARGYSVHIVDPVKQLLAKGGYLESSVEIEESTKRVDAAN 178

Query: 99  -SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR 157
            +    ++  GF A         L R+GSD+SAA + A L A    IWTDVDGVY+ DPR
Sbjct: 179 IAKDKVVLMAGFTAGNEKGELVLLGRNGSDYSAACLAACLGASVCEIWTDVDGVYTCDPR 238

Query: 158 KVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRP 217
            V +A +L TLSY+EA E+SYFGA V+HPRTI P++  +IP VI+N  N S PG +I   
Sbjct: 239 LVPDARLLPTLSYREAMELSYFGAKVIHPRTIGPLLPQNIPCVIKNTGNPSAPGSII--- 295

Query: 218 PVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
             D N   + +   VKG   +DNLA+ NV G GM G+ G A+ +F A+   G +VI+I+Q
Sbjct: 296 --DGNVKSESLQ--VKGITNLDNLAMFNVSGPGMQGMVGMASRVFSAMSGAGISVILITQ 351

Query: 278 ASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRL 313
           +SSE+S+ F VP K  +     LE++F   LN  +L
Sbjct: 352 SSSEYSISFCVPVKSAEVAKTVLETEFANELNEHQL 387

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
255569084	920	aspartate kinase, putative [Ricinus comm	0.886	0.315	0.875	1e-150
224145045	829	predicted protein [Populus trichocarpa]	0.880	0.347	0.868	1e-149
224136137	843	predicted protein [Populus trichocarpa]	0.880	0.341	0.862	1e-147
147856217	841	hypothetical protein VITISV_034964 [Viti	0.911	0.354	0.819	1e-146
297740938	871	unnamed protein product [Vitis vinifera]	0.911	0.342	0.819	1e-146
225460063	918	PREDICTED: bifunctional aspartokinase/ho	0.911	0.324	0.819	1e-146
351721667	916	aspartokinase-homoserine dehydrogenase [	0.880	0.314	0.850	1e-145
357518663	909	Bifunctional aspartokinase/homoserine de	0.886	0.319	0.844	1e-144
357518661	917	Bifunctional aspartokinase/homoserine de	0.892	0.318	0.839	1e-144
449481510	918	PREDICTED: bifunctional aspartokinase/ho	0.880	0.313	0.851	1e-144

>gi|255569084|ref|XP_002525511.1| aspartate kinase, putative [Ricinus communis] gi|223535190|gb|EEF36869.1| aspartate kinase, putative [Ricinus communis]

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 254/290 (87%), Positives = 272/290 (93%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESFTDFVVGHGELWSAQML+ VVRK+G DCKWMDTREVLIVNPTSSNQVDPDF E
Sbjct: 198 AGHATESFTDFVVGHGELWSAQMLSYVVRKSGQDCKWMDTREVLIVNPTSSNQVDPDFVE 257

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLE+WF++ P  TI+ATGFIASTP NIPTTLKRDGSDFSAAIMGALLRA QVTIWTD
Sbjct: 258 SEKRLEEWFAKHPCKTIVATGFIASTPQNIPTTLKRDGSDFSAAIMGALLRARQVTIWTD 317

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPI+IRNIFNL
Sbjct: 318 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIMIRNIFNL 377

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           + PG MICR   DENED Q ++S VKGFATIDN+ALVNVEGTGMAGVPGTA+AIFGAVKD
Sbjct: 378 ASPGTMICRTSTDENEDCQKLESFVKGFATIDNVALVNVEGTGMAGVPGTASAIFGAVKD 437

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFS 317
           VGANVIMISQASSEHSVCFAVPEKEV AVAEAL+S+FR+AL+AGRLSQ +
Sbjct: 438 VGANVIMISQASSEHSVCFAVPEKEVNAVAEALQSRFRQALHAGRLSQVA 487

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145045|ref|XP_002325506.1| predicted protein [Populus trichocarpa] gi|222862381|gb|EEE99887.1| predicted protein [Populus trichocarpa]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 252/290 (86%), Positives = 273/290 (94%), Gaps = 2/290 (0%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELW+AQML+ VVRKNG+DC+WMDTREVLIVNP+ SNQVDPDF E
Sbjct: 109 AGHATESFSDFVVGHGELWTAQMLSYVVRKNGLDCEWMDTREVLIVNPSGSNQVDPDFVE 168

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLE+WFS+ PS TI+ATGFIASTP NIPTTLKRDGSDFSAAIMGA++RA QVTIWTD
Sbjct: 169 SEKRLEEWFSRHPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAIMGAMVRARQVTIWTD 228

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI+PVMRYDIPI+IRNIFNL
Sbjct: 229 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTILPVMRYDIPIMIRNIFNL 288

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MICRP   ENED Q ++SPVKGFATIDN+ALVNVEGTGMAGVPGTA+AIFGAVKD
Sbjct: 289 SAPGTMICRPA--ENEDGQKLESPVKGFATIDNVALVNVEGTGMAGVPGTASAIFGAVKD 346

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFS 317
           VGANVIMISQASSEHSVCFAVPEKEV AVAEAL+S+F EALNAGRLSQ +
Sbjct: 347 VGANVIMISQASSEHSVCFAVPEKEVTAVAEALKSRFHEALNAGRLSQVA 396

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136137|ref|XP_002327390.1| predicted protein [Populus trichocarpa] gi|222835760|gb|EEE74195.1| predicted protein [Populus trichocarpa]

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 250/290 (86%), Positives = 272/290 (93%), Gaps = 2/290 (0%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQML+ VVRKNG+DC+WMDTREVLIVNP+ SNQVDPDF+E
Sbjct: 123 AGHATESFSDFVVGHGELWSAQMLSYVVRKNGLDCEWMDTREVLIVNPSGSNQVDPDFAE 182

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLE+WFS+ PS TI+ATGFIAST  NIPTTLKRDGSDFSAAIMGAL+RA QVTIWTD
Sbjct: 183 SEKRLEEWFSRHPSKTIVATGFIASTQQNIPTTLKRDGSDFSAAIMGALVRARQVTIWTD 242

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI+PVMRYDIPI+IRN+FNL
Sbjct: 243 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIMPVMRYDIPILIRNVFNL 302

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MICRP   ENED Q ++S VKGFATIDN+ALVNVEGTGMAGVPGTA+AIFGAVKD
Sbjct: 303 SAPGTMICRPA--ENEDGQKLESLVKGFATIDNVALVNVEGTGMAGVPGTASAIFGAVKD 360

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFS 317
           VGANVI+ISQASSEHSVCFAVPEKEV AVAEAL+S+F EALNAGRLSQ +
Sbjct: 361 VGANVIVISQASSEHSVCFAVPEKEVAAVAEALKSRFHEALNAGRLSQVA 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856217|emb|CAN82421.1| hypothetical protein VITISV_034964 [Vitis vinifera]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/304 (81%), Positives = 274/304 (90%), Gaps = 6/304 (1%)

Query: 14  EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV 73
           E +R+ Y       +GHA+E F+D +VGHGELWSAQML++VVRK GIDCKWMDTR+VLIV
Sbjct: 111 EMLRAIYI------AGHASELFSDIIVGHGELWSAQMLSSVVRKKGIDCKWMDTRDVLIV 164

Query: 74  NPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIM 133
           NPTS+NQVDPDF ESE RLEKWF Q+PS TI+ATGFIASTP NIPTTLKRDGSDFSAAIM
Sbjct: 165 NPTSANQVDPDFVESEMRLEKWFFQNPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAIM 224

Query: 134 GALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193
           GAL RA QVTIWTDVDGVYSADPRKV+EAVIL  LSYQEAWEMSYFGANVLHPRTIIPVM
Sbjct: 225 GALFRARQVTIWTDVDGVYSADPRKVAEAVILNQLSYQEAWEMSYFGANVLHPRTIIPVM 284

Query: 194 RYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAG 253
           +Y IPIVIRNIFNLS PG MICRP VDENE  Q ++SPVKGFATIDN+AL+NVEGTGMAG
Sbjct: 285 QYGIPIVIRNIFNLSAPGTMICRPSVDENEGNQRLESPVKGFATIDNVALINVEGTGMAG 344

Query: 254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRL 313
           VPGTA+AIF AVKDVGANVIMISQASSEHSVCFAVPEKEV+AVAEAL+S+FR+AL+AGRL
Sbjct: 345 VPGTASAIFSAVKDVGANVIMISQASSEHSVCFAVPEKEVEAVAEALQSRFRQALDAGRL 404

Query: 314 SQFS 317
           SQ +
Sbjct: 405 SQVA 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740938|emb|CBI31250.3| unnamed protein product [Vitis vinifera]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/304 (81%), Positives = 274/304 (90%), Gaps = 6/304 (1%)

Query: 14  EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV 73
           E +R+ Y       +GHA+E F+D +VGHGELWSAQML++VVRK GIDCKWMDTR+VLIV
Sbjct: 141 EMLRAIYI------AGHASELFSDIIVGHGELWSAQMLSSVVRKKGIDCKWMDTRDVLIV 194

Query: 74  NPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIM 133
           NPTS+NQVDPDF ESE RLEKWF Q+PS TI+ATGFIASTP NIPTTLKRDGSDFSAAIM
Sbjct: 195 NPTSANQVDPDFVESEMRLEKWFFQNPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAIM 254

Query: 134 GALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193
           GAL RA QVTIWTDVDGVYSADPRKV+EAVIL  LSYQEAWEMSYFGANVLHPRTIIPVM
Sbjct: 255 GALFRARQVTIWTDVDGVYSADPRKVAEAVILNQLSYQEAWEMSYFGANVLHPRTIIPVM 314

Query: 194 RYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAG 253
           +Y IPIVIRNIFNLS PG MICRP VDENE  Q ++SPVKGFATIDN+AL+NVEGTGMAG
Sbjct: 315 QYGIPIVIRNIFNLSAPGTMICRPSVDENEGNQRLESPVKGFATIDNVALINVEGTGMAG 374

Query: 254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRL 313
           VPGTA+AIF AVKDVGANVIMISQASSEHSVCFAVPEKEV+AVAEAL+S+FR+AL+AGRL
Sbjct: 375 VPGTASAIFSAVKDVGANVIMISQASSEHSVCFAVPEKEVEAVAEALQSRFRQALDAGRL 434

Query: 314 SQFS 317
           SQ +
Sbjct: 435 SQVA 438

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460063|ref|XP_002271525.1| PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic-like [Vitis vinifera]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/304 (81%), Positives = 274/304 (90%), Gaps = 6/304 (1%)

Query: 14  EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV 73
           E +R+ Y       +GHA+E F+D +VGHGELWSAQML++VVRK GIDCKWMDTR+VLIV
Sbjct: 188 EMLRAIYI------AGHASELFSDIIVGHGELWSAQMLSSVVRKKGIDCKWMDTRDVLIV 241

Query: 74  NPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIM 133
           NPTS+NQVDPDF ESE RLEKWF Q+PS TI+ATGFIASTP NIPTTLKRDGSDFSAAIM
Sbjct: 242 NPTSANQVDPDFVESEMRLEKWFFQNPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAIM 301

Query: 134 GALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193
           GAL RA QVTIWTDVDGVYSADPRKV+EAVIL  LSYQEAWEMSYFGANVLHPRTIIPVM
Sbjct: 302 GALFRARQVTIWTDVDGVYSADPRKVAEAVILNQLSYQEAWEMSYFGANVLHPRTIIPVM 361

Query: 194 RYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAG 253
           +Y IPIVIRNIFNLS PG MICRP VDENE  Q ++SPVKGFATIDN+AL+NVEGTGMAG
Sbjct: 362 QYGIPIVIRNIFNLSAPGTMICRPSVDENEGNQRLESPVKGFATIDNVALINVEGTGMAG 421

Query: 254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRL 313
           VPGTA+AIF AVKDVGANVIMISQASSEHSVCFAVPEKEV+AVAEAL+S+FR+AL+AGRL
Sbjct: 422 VPGTASAIFSAVKDVGANVIMISQASSEHSVCFAVPEKEVEAVAEALQSRFRQALDAGRL 481

Query: 314 SQFS 317
           SQ +
Sbjct: 482 SQVA 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721667|ref|NP_001237473.1| aspartokinase-homoserine dehydrogenase [Glycine max] gi|2970447|gb|AAC05981.1| aspartokinase-homoserine dehydrogenase [Glycine max]

 Score =  520 bits (1339), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 245/288 (85%), Positives = 266/288 (92%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESFTDFVVGHGELWSAQML+ V+RKNG DCKWMDTR+VLIVNPT SNQVDPD+ E
Sbjct: 194 AGHATESFTDFVVGHGELWSAQMLSLVIRKNGTDCKWMDTRDVLIVNPTGSNQVDPDYLE 253

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SE+RLEKW+S +P   IIATGFIASTP NIPTTLKRDGSDFSAAIMGAL +A QVTIWTD
Sbjct: 254 SEQRLEKWYSLNPCKVIIATGFIASTPQNIPTTLKRDGSDFSAAIMGALFKARQVTIWTD 313

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVIL+TLSYQEAWEMSYFGANVLHPRTIIPVMRY IPI+IRNIFNL
Sbjct: 314 VDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMRYGIPIMIRNIFNL 373

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG  IC P V+++ED Q + + VKGFATIDNLALVNVEGTGMAGVPGTA+AIFGAVKD
Sbjct: 374 SAPGTKICHPSVNDHEDSQNLQNFVKGFATIDNLALVNVEGTGMAGVPGTASAIFGAVKD 433

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ 315
           VGANVIMISQASSEHSVCFAVPEKEVKAVAEAL+S+FR+AL+ GRLSQ
Sbjct: 434 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALQSRFRQALDNGRLSQ 481

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518663|ref|XP_003629620.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula] gi|355523642|gb|AET04096.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/290 (84%), Positives = 266/290 (91%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GH TESFTDFVVGHGELWSAQML+ V+RKNGIDCKWMDTREVLIVNPTSSNQVDPD+ E
Sbjct: 187 AGHVTESFTDFVVGHGELWSAQMLSLVIRKNGIDCKWMDTREVLIVNPTSSNQVDPDYLE 246

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SE+RLEKW+S +P   IIATGFIASTP+NIPTTLKRDGSDFSAAIMG+L RA QVTIWTD
Sbjct: 247 SERRLEKWYSLNPCKVIIATGFIASTPENIPTTLKRDGSDFSAAIMGSLFRARQVTIWTD 306

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVIL+TLSYQEAWEMSYFGANVLHPRTIIPVMRY IPI+IRNIFNL
Sbjct: 307 VDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMRYGIPILIRNIFNL 366

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG  IC P V + ED+  + + VKGFATIDNLALVNVEGTGMAGVPGTA+AIF AVKD
Sbjct: 367 SAPGTKICHPVVSDYEDKSNLQNYVKGFATIDNLALVNVEGTGMAGVPGTASAIFAAVKD 426

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFS 317
           VGANVIMISQASSEHSVCFAVPEKEVKAVAEAL+S+FR+AL+ GRLSQ +
Sbjct: 427 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALQSRFRQALDNGRLSQVA 476

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518661|ref|XP_003629619.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula] gi|355523641|gb|AET04095.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/292 (83%), Positives = 266/292 (91%)

Query: 26  VDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDF 85
           +  GH TESFTDFVVGHGELWSAQML+ V+RKNGIDCKWMDTREVLIVNPTSSNQVDPD+
Sbjct: 193 IGPGHVTESFTDFVVGHGELWSAQMLSLVIRKNGIDCKWMDTREVLIVNPTSSNQVDPDY 252

Query: 86  SESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIW 145
            ESE+RLEKW+S +P   IIATGFIASTP+NIPTTLKRDGSDFSAAIMG+L RA QVTIW
Sbjct: 253 LESERRLEKWYSLNPCKVIIATGFIASTPENIPTTLKRDGSDFSAAIMGSLFRARQVTIW 312

Query: 146 TDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF 205
           TDVDGVYSADPRKVSEAVIL+TLSYQEAWEMSYFGANVLHPRTIIPVMRY IPI+IRNIF
Sbjct: 313 TDVDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMRYGIPILIRNIF 372

Query: 206 NLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAV 265
           NLS PG  IC P V + ED+  + + VKGFATIDNLALVNVEGTGMAGVPGTA+AIF AV
Sbjct: 373 NLSAPGTKICHPVVSDYEDKSNLQNYVKGFATIDNLALVNVEGTGMAGVPGTASAIFAAV 432

Query: 266 KDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFS 317
           KDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL+S+FR+AL+ GRLSQ +
Sbjct: 433 KDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALQSRFRQALDNGRLSQVA 484

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449481510|ref|XP_004156204.1| PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic-like [Cucumis sativus]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/290 (85%), Positives = 269/290 (92%), Gaps = 2/290 (0%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHA ESFTDFVVGHGELWSA ML+AV+RK G+DCKWMDTREVLIVNPTSSNQVDPDF E
Sbjct: 198 AGHAMESFTDFVVGHGELWSASMLSAVIRKRGLDCKWMDTREVLIVNPTSSNQVDPDFLE 257

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SE+RLE+W+S++ S  IIATGFIAST +NIPTTLKRDGSDFSAAIMGALL + QVTIWTD
Sbjct: 258 SERRLEQWYSKNSSKIIIATGFIASTHENIPTTLKRDGSDFSAAIMGALLTSRQVTIWTD 317

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKV EAV+L+TLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPI+IRNIFNL
Sbjct: 318 VDGVYSADPRKVKEAVVLKTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIIIRNIFNL 377

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MICR PVDE E E ++ S VKGFATIDN+ALVNVEGTGMAGVPGTANAIFGAVKD
Sbjct: 378 SAPGTMICRQPVDE-ESESLV-SFVKGFATIDNVALVNVEGTGMAGVPGTANAIFGAVKD 435

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFS 317
           VGANV+MISQASSEHSVCFAVPEKEVKAVAEAL+S+FR+AL AGRLSQ +
Sbjct: 436 VGANVVMISQASSEHSVCFAVPEKEVKAVAEALKSRFRQALEAGRLSQVA 485

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	327
TAIR|locus:2133995	916	AK-HSDH II "aspartate kinase-h	0.874	0.312	0.795	6.7e-120
TAIR|locus:2029564	911	AK-HSDH I "aspartate kinase-ho	0.874	0.313	0.795	2.9e-119
UNIPROTKB|P00561	820	thrA "ThrA" [Escherichia coli	0.825	0.329	0.370	7.4e-42
UNIPROTKB|Q9KPK3	825	VC_2364 "Aspartokinase I/homos	0.727	0.288	0.405	2.1e-41
TIGR_CMR|VC_2364	825	VC_2364 "aspartokinase I/homos	0.727	0.288	0.405	2.1e-41
TIGR_CMR|CPS_4291	825	CPS_4291 "aspartokinase/homose	0.727	0.288	0.395	4.2e-40
TIGR_CMR|SO_3415	822	SO_3415 "aspartokinase I/homos	0.730	0.290	0.379	7.3e-37
UNIPROTKB|Q9KUW8	479	VC_0391 "Aspartokinase" [Vibri	0.529	0.361	0.365	2.6e-31
TIGR_CMR|VC_0391	479	VC_0391 "aspartokinase III, ly	0.529	0.361	0.365	2.6e-31
UNIPROTKB|P08660	449	lysC "LysC" [Escherichia coli	0.721	0.525	0.32	1.3e-29

TAIR|locus:2133995 AK-HSDH II "aspartate kinase-homoserine dehydrogenase ii" [Arabidopsis thaliana (taxid:3702)]

 Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
 Identities = 229/288 (79%), Positives = 250/288 (86%)

Query:    28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
             +GHA+ESF+DFV GHGELWSAQML+ VVRK G++CKWMDTR+VLIVNPTSSNQVDPDF E
Sbjct:   196 AGHASESFSDFVAGHGELWSAQMLSYVVRKTGLECKWMDTRDVLIVNPTSSNQVDPDFGE 255

Query:    88 SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
             SEKRL+KWFS +PS  IIATGFIASTP NIPTTLKRDGSDFSAAIMGALLRA QVTIWTD
Sbjct:   256 SEKRLDKWFSLNPSKIIIATGFIASTPQNIPTTLKRDGSDFSAAIMGALLRARQVTIWTD 315

Query:   148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
             VDGVYSADPRKV+EAVIL+TLSYQEAWEMSYFGANVLHPRTIIPVMRY+IPIVIRNIFNL
Sbjct:   316 VDGVYSADPRKVNEAVILQTLSYQEAWEMSYFGANVLHPRTIIPVMRYNIPIVIRNIFNL 375

Query:   208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
             S PG +IC+PP D+ + +  + +PVKGFATIDNLAL+NVEGTGMAGVPGTA+ IFG VKD
Sbjct:   376 SAPGTIICQPPEDDYDLK--LTTPVKGFATIDNLALINVEGTGMAGVPGTASDIFGCVKD 433

Query:   268 VGANVIMISQASSEHSVCFXXXXXXXXXXXXXXXXXFREALNAGRLSQ 315
             VGANVIMISQASSEHSVCF                 F EAL AGRLSQ
Sbjct:   434 VGANVIMISQASSEHSVCFAVPEKEVNAVSEALRSRFSEALQAGRLSQ 481

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009067 "aspartate family amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2029564 AK-HSDH I "aspartate kinase-homoserine dehydrogenase i" [Arabidopsis thaliana (taxid:3702)]

 Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
 Identities = 229/288 (79%), Positives = 250/288 (86%)

Query:    28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
             +GHATESF+DFVVGHGELWSAQMLAAVVRK+G+DC WMD R+VL+V PTSSNQVDPDF E
Sbjct:   191 AGHATESFSDFVVGHGELWSAQMLAAVVRKSGLDCTWMDARDVLVVIPTSSNQVDPDFVE 250

Query:    88 SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
             SEKRLEKWF+Q+ +  IIATGFIASTP NIPTTLKRDGSDFSAAIM AL R+HQ+TIWTD
Sbjct:   251 SEKRLEKWFTQNSAKIIIATGFIASTPQNIPTTLKRDGSDFSAAIMSALFRSHQLTIWTD 310

Query:   148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
             VDGVYSADPRKVSEAV+L+TLSYQEAWEMSYFGANVLHPRTIIPVM+YDIPIVIRNIFNL
Sbjct:   311 VDGVYSADPRKVSEAVVLKTLSYQEAWEMSYFGANVLHPRTIIPVMKYDIPIVIRNIFNL 370

Query:   208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
             S PG MICR  +D+ ED   +D+PVKGFATIDNLALVNVEGTGMAGVPGTA+AIF AVK+
Sbjct:   371 SAPGTMICRQ-IDD-EDGFKLDAPVKGFATIDNLALVNVEGTGMAGVPGTASAIFSAVKE 428

Query:   268 VGANVIMISQASSEHSVCFXXXXXXXXXXXXXXXXXFREALNAGRLSQ 315
             VGANVIMISQASSEHSVCF                 FR+AL  GRLSQ
Sbjct:   429 VGANVIMISQASSEHSVCFAVPEKEVKAVSEALNSRFRQALAGGRLSQ 476

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009067 "aspartate family amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|P00561 thrA "ThrA" [Escherichia coli K-12 (taxid:83333)]

 Score = 451 (163.8 bits), Expect = 7.4e-42, P = 7.4e-42
 Identities = 106/286 (37%), Positives = 168/286 (58%)

Query:     3 QVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDC 62
             Q++ +V +  +  I+   + +S +  G   +S    ++  GE  S  ++A V+   G + 
Sbjct:    89 QLKTFVDQ-EFAQIKHVLHGISLL--GQCPDSINAALICRGEKMSIAIMAGVLEARGHNV 145

Query:    63 KWMDTREVLI-VNPTSSNQVDPDFSESEKRLEKWFSQSPSN-TIIATGFIASTPDNIPTT 120
               +D  E L+ V     + VD   +ES +R+    S+ P++  ++  GF A         
Sbjct:   146 TVIDPVEKLLAVGHYLESTVD--IAESTRRIAA--SRIPADHMVLMAGFTAGNEKGELVV 201

Query:   121 LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG 180
             L R+GSD+SAA++ A LRA    IWTDVDGVY+ DPR+V +A +L+++SYQEA E+SYFG
Sbjct:   202 LGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFG 261

Query:   181 ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDN 240
             A VLHPRTI P+ ++ IP +I+N  N   PG +I       +EDE     PVKG + ++N
Sbjct:   262 AKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLI---GASRDEDEL----PVKGISNLNN 314

Query:   241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCF 286
             +A+ +V G GM G+ G A  +F A+     +V++I+Q+SSE+S+ F
Sbjct:   315 MAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF 360

GO:0050661 "NADP binding" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009088 "threonine biosynthetic process" evidence=IEA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;IDA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;IDA

GO:0009090 "homoserine biosynthetic process" evidence=IDA

UNIPROTKB|Q9KPK3 VC_2364 "Aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 447 (162.4 bits), Expect = 2.1e-41, P = 2.1e-41
 Identities = 101/249 (40%), Positives = 146/249 (58%)

Query:    39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-QVDPDFSESEKRLEKWFS 97
             ++  GE  S Q++ AV+   G+    +D  + L+         VD + S    R +    
Sbjct:   128 IISKGERVSIQLMKAVMEAKGLPANLVDPVKYLLAKGDHLEAMVDVEISTQRFR-QAPLP 186

Query:    98 QSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR 157
             Q   N  I  GF A         L R+GSD+SAA++ A LRA    IWTDVDGVY+ DPR
Sbjct:   187 QQHVN--IMPGFTAGNAQGELVCLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYNCDPR 244

Query:   158 KVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRP 217
              V +A +L++LSYQEA E+SYFGA+VLHP+TI P+ ++ IP +I+N FN    G +I + 
Sbjct:   245 LVDDARLLKSLSYQEAMELSYFGASVLHPKTIAPIAQFQIPCLIKNSFNPQGAGTLIGQ- 303

Query:   218 PVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
               D  ED+  I    KG  T+ NL +VNV G GM G+ G A+ +FGA+     ++++I+Q
Sbjct:   304 --DTGEDKLAI----KGITTLSNLTMVNVSGPGMKGMVGMASRVFGAMSAADVSIVLITQ 357

Query:   278 ASSEHSVCF 286
             +SSE+S+ F
Sbjct:   358 SSSEYSISF 366

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

TIGR_CMR|VC_2364 VC_2364 "aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 447 (162.4 bits), Expect = 2.1e-41, P = 2.1e-41
 Identities = 101/249 (40%), Positives = 146/249 (58%)

Query:    39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-QVDPDFSESEKRLEKWFS 97
             ++  GE  S Q++ AV+   G+    +D  + L+         VD + S    R +    
Sbjct:   128 IISKGERVSIQLMKAVMEAKGLPANLVDPVKYLLAKGDHLEAMVDVEISTQRFR-QAPLP 186

Query:    98 QSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR 157
             Q   N  I  GF A         L R+GSD+SAA++ A LRA    IWTDVDGVY+ DPR
Sbjct:   187 QQHVN--IMPGFTAGNAQGELVCLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYNCDPR 244

Query:   158 KVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRP 217
              V +A +L++LSYQEA E+SYFGA+VLHP+TI P+ ++ IP +I+N FN    G +I + 
Sbjct:   245 LVDDARLLKSLSYQEAMELSYFGASVLHPKTIAPIAQFQIPCLIKNSFNPQGAGTLIGQ- 303

Query:   218 PVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
               D  ED+  I    KG  T+ NL +VNV G GM G+ G A+ +FGA+     ++++I+Q
Sbjct:   304 --DTGEDKLAI----KGITTLSNLTMVNVSGPGMKGMVGMASRVFGAMSAADVSIVLITQ 357

Query:   278 ASSEHSVCF 286
             +SSE+S+ F
Sbjct:   358 SSSEYSISF 366

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

TIGR_CMR|CPS_4291 CPS_4291 "aspartokinase/homoserine dehydrogenase, threonine-sensitive" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 435 (158.2 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 100/253 (39%), Positives = 149/253 (58%)

Query:    39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ 98
             ++  GE  S  +L AV++   +    +   + L  N +S N V  D   S+++ E  +++
Sbjct:   122 IISTGERLSVAILDAVLQAYSVQVSLLAPEKFLYTNKSSLNAV-ADLVLSKEKFEHEYTE 180

Query:    99 SPSNTIIATGFIASTPDN---IP--TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYS 153
               +   +  GFI    DN    P  TTL R+GSD+SAA++     A    IWTDVDGVY+
Sbjct:   181 L-NQVSLMPGFIGVNADNNDGTPEVTTLGRNGSDYSAAVLAVCAVAECCEIWTDVDGVYN 239

Query:   154 ADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIM 213
             ADPR + EA +L  LSYQEA E+SYFGA+VLHP+TI P+ +Y IP +I+N  N S PG +
Sbjct:   240 ADPRYIKEAKLLDYLSYQEAMELSYFGASVLHPKTIGPIAQYHIPCLIKNTSNPSAPGTL 299

Query:   214 ICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVI 273
             I       NE++Q     VK  + +D+L +VNV G GM G+ G A+ +F  +     +++
Sbjct:   300 I------SNENDQ--QKRVKAISNLDDLTMVNVSGPGMKGMVGMASRVFATMSRENISLV 351

Query:   274 MISQASSEHSVCF 286
             +ISQ+SSE+ + F
Sbjct:   352 LISQSSSEYCISF 364

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

TIGR_CMR|SO_3415 SO_3415 "aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 405 (147.6 bits), Expect = 7.3e-37, P = 7.3e-37
 Identities = 94/248 (37%), Positives = 136/248 (54%)

Query:    39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ 98
             +V  GE  SA ++  V+   GI    +D R++ +        V  D + S+ R +     
Sbjct:   123 IVVAGERLSAALMEQVMLAKGITSAQLDPRKLFLGRGRPLESV-VDIAVSKPRFKNLLLD 181

Query:    99 SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRK 158
                   +  GF A+  D    TL R+GSD+SAA++ A L A    IWTDVDGVY+ DPR 
Sbjct:   182 E-KRVWVMPGFTAADEDGKVVTLGRNGSDYSAAVLAACLDASSCEIWTDVDGVYNTDPRV 240

Query:   159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPP 218
             V++A +L  LSYQEA E+SYFGA VLHP+TI P+ ++ IP  I+N FN   PG +     
Sbjct:   241 VADAKLLSQLSYQEAMELSYFGAKVLHPKTIAPIAQFHIPCYIKNSFNPDAPGTL----- 295

Query:   219 VDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278
             V    D   +   VK  + +DN  + +V G GM G+ G A+    A+   G +V +I+Q+
Sbjct:   296 VSNLADASGLQ--VKAISNLDNQTMFDVSGPGMKGMVGMASRTLAAISRSGVSVSLITQS 353

Query:   279 SSEHSVCF 286
             S E+S+ F
Sbjct:   354 SCEYSISF 361

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

UNIPROTKB|Q9KUW8 VC_0391 "Aspartokinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 299 (110.3 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
 Identities = 64/175 (36%), Positives = 99/175 (56%)

Query:    28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
             S  +++  TD +V  GEL S  +L  ++R+ G+D    D REVL  +     + +P   E
Sbjct:   132 SFQSSKKLTDHLVACGELISTYILTQLMRERGVDAVRFDIREVLRTDD-HYGRAEPQLKE 190

Query:    88 -SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
              ++   EK         ++  GFI S      TTL R GSD+SAA++   ++A  + IWT
Sbjct:   191 IAQLAKEKLVPLCEQYVVVTQGFIGSDAQGNTTTLGRGGSDYSAALIAEAVQASGLEIWT 250

Query:   147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201
             DV G+YS DPR   +A  +  +S+ EA EM+ FGA +LHP T++P +R+ IP+ +
Sbjct:   251 DVPGIYSTDPRIAPKAAPIPEISFSEASEMANFGAKILHPSTLLPAVRHGIPVFV 305

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

TIGR_CMR|VC_0391 VC_0391 "aspartokinase III, lysine-sensitive" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 299 (110.3 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
 Identities = 64/175 (36%), Positives = 99/175 (56%)

Query:    28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
             S  +++  TD +V  GEL S  +L  ++R+ G+D    D REVL  +     + +P   E
Sbjct:   132 SFQSSKKLTDHLVACGELISTYILTQLMRERGVDAVRFDIREVLRTDD-HYGRAEPQLKE 190

Query:    88 -SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
              ++   EK         ++  GFI S      TTL R GSD+SAA++   ++A  + IWT
Sbjct:   191 IAQLAKEKLVPLCEQYVVVTQGFIGSDAQGNTTTLGRGGSDYSAALIAEAVQASGLEIWT 250

Query:   147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201
             DV G+YS DPR   +A  +  +S+ EA EM+ FGA +LHP T++P +R+ IP+ +
Sbjct:   251 DVPGIYSTDPRIAPKAAPIPEISFSEASEMANFGAKILHPSTLLPAVRHGIPVFV 305

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

UNIPROTKB|P08660 lysC "LysC" [Escherichia coli K-12 (taxid:83333)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 80/250 (32%), Positives = 130/250 (52%)

Query:    34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE-SEKRL 92
             + TD +V HGEL S  +   ++R+  +  +W D R+V+  N     + +PD +  +E   
Sbjct:   109 ALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFG-RAEPDIAALAELAA 167

Query:    93 EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
              +   +     +I  GFI S      TTL R GSD++AA++   L A +V IWTDV G+Y
Sbjct:   168 LQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIY 227

Query:   153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
             + DPR VS A  +  +++ EA EM+ FGA VLHP T++P +R DIP+ + +  +    G 
Sbjct:   228 TTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGT 287

Query:   213 MICRPPVDENEDEQIIDSPV-KGFATIDNLALVNVEGTGMAGVPGTANAIFG--AVKDVG 269
             ++C      N+ E   + P+ +  A   N  L+ +    M    G    +FG  A  ++ 
Sbjct:   288 LVC------NKTE---NPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNIS 338

Query:   270 ANVIMISQAS 279
              ++I  S+ S
Sbjct:   339 VDLITTSEVS 348

GO:0016597 "amino acid binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;IDA

GO:0009090 "homoserine biosynthetic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81852	AKH2_ARATH	1, ., 1, ., 1, ., 3	0.7935	0.9174	0.3275	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.2	LOW CONFIDENCE prediction!
4th Layer	2.7.2.4	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	327
PRK09436	819	PRK09436, thrA, bifunctional aspartokinase I/homos	1e-104
cd04257	294	cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kina	8e-97
COG0527	447	COG0527, LysC, Aspartokinases [Amino acid transpor	4e-91
cd04243	293	cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino	6e-91
PRK06291	465	PRK06291, PRK06291, aspartate kinase; Provisional	1e-78
cd04234	227	cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfa	6e-76
TIGR00657	441	TIGR00657, asp_kinases, aspartate kinase	3e-74
TIGR00656	401	TIGR00656, asp_kin_monofn, aspartate kinase, monof	3e-63
PRK09084	448	PRK09084, PRK09084, aspartate kinase III; Validate	2e-51
cd04244	298	cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino	3e-50
cd04258	292	cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Ami	1e-49
PRK08961	861	PRK08961, PRK08961, bifunctional aspartate kinase/	1e-45
PRK09466	810	PRK09466, metL, bifunctional aspartate kinase II/h	6e-45
PRK06635	404	PRK06635, PRK06635, aspartate kinase; Reviewed	7e-42
cd04259	295	cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Ki	5e-39
cd04245	288	cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Ami	2e-36
cd04246	239	cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino	5e-34
PRK09034	454	PRK09034, PRK09034, aspartate kinase; Reviewed	5e-34
cd02115	248	cd02115, AAK, Amino Acid Kinases (AAK) superfamily	4e-32
PLN02551	521	PLN02551, PLN02551, aspartokinase	5e-32
PRK08210	403	PRK08210, PRK08210, aspartate kinase I; Reviewed	1e-31
cd04260	244	cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino A	9e-31
cd04261	239	cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino	5e-30
PRK07431	587	PRK07431, PRK07431, aspartate kinase; Provisional	5e-29
cd04921	80	cd04921, ACT_AKi-HSDH-ThrA-like_1, ACT domains of	4e-28
pfam00696	230	pfam00696, AA_kinase, Amino acid kinase family	6e-28
PRK05925	440	PRK05925, PRK05925, aspartate kinase; Provisional	1e-27
PRK08373	341	PRK08373, PRK08373, aspartate kinase; Validated	3e-27
cd04247	306	cd04247, AAK_AK-Hom3, AAK_AK-Hom3: Amino Acid Kina	1e-26
TIGR02078	327	TIGR02078, AspKin_pair, Pyrococcus aspartate kinas	3e-20
cd04892	65	cd04892, ACT_AK-like_2, ACT domains C-terminal to	8e-19
PRK08841	392	PRK08841, PRK08841, aspartate kinase; Validated	7e-18
PRK06291	465	PRK06291, PRK06291, aspartate kinase; Provisional	4e-16
cd04868	60	cd04868, ACT_AK-like, ACT domains C-terminal to th	5e-15
cd04924	66	cd04924, ACT_AK-Arch_2, ACT domains of a monofunct	2e-13
PRK09084	448	PRK09084, PRK09084, aspartate kinase III; Validate	2e-12
cd04239	229	cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase	4e-10
PRK09034	454	PRK09034, PRK09034, aspartate kinase; Reviewed	6e-09
cd04917	64	cd04917, ACT_AKiii-LysC-EC_2, ACT domains located	2e-08
cd04916	66	cd04916, ACT_AKiii-YclM-BS_2, ACT domains located	3e-08
PRK00358	231	PRK00358, pyrH, uridylate kinase; Provisional	3e-08
COG0528	238	COG0528, PyrH, Uridylate kinase [Nucleotide transp	4e-08
cd04922	66	cd04922, ACT_AKi-HSDH-ThrA_2, ACT domains of the b	5e-08
TIGR02075	232	TIGR02075, pyrH_bact, uridylate kinase	1e-07
cd04254	231	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, t	4e-07
cd04248	304	cd04248, AAK_AK-Ectoine, AAK_AK-Ectoine: Amino Aci	1e-05
PRK14558	231	PRK14558, pyrH, uridylate kinase; Provisional	1e-05
cd04923	63	cd04923, ACT_AK-LysC-DapG-like_2, ACT domains of t	2e-05
pfam01842	66	pfam01842, ACT, ACT domain	2e-05
TIGR02076	221	TIGR02076, pyrH_arch, uridylate kinase, putative	2e-05
cd04253	221	cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP k	2e-05
cd04936	63	cd04936, ACT_AKii-LysC-BS-like_2, ACT domains of t	2e-05
PRK06635	404	PRK06635, PRK06635, aspartate kinase; Reviewed	3e-05
PRK09181	475	PRK09181, PRK09181, aspartate kinase; Validated	8e-05
PRK07431	587	PRK07431, PRK07431, aspartate kinase; Provisional	3e-04
cd04913	75	cd04913, ACT_AKii-LysC-BS-like_1, ACT domains of t	4e-04
pfam13840	65	pfam13840, ACT_7, Family description	4e-04
cd04242	251	cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-k	8e-04
PRK07431	587	PRK07431, PRK07431, aspartate kinase; Provisional	0.001
PRK05429	372	PRK05429, PRK05429, gamma-glutamyl kinase; Provisi	0.001
COG0263	369	COG0263, ProB, Glutamate 5-kinase [Amino acid tran	0.001
TIGR01027	363	TIGR01027, proB, glutamate 5-kinase	0.002
cd04255	262	cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD i	0.003

>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

 Score =  322 bits (827), Expect = e-104
 Identities = 115/290 (39%), Positives = 169/290 (58%), Gaps = 13/290 (4%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96
             ++  GE  S  ++AAV+   G D   +D RE+L+ +     +   D +ES +R+   F
Sbjct: 120 AAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLLAD-GHYLESTVDIAESTRRIAASF 178

Query: 97  SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADP 156
             +  + I+  GF A        TL R+GSD+SAAI+ A L A    IWTDVDGVY+ADP
Sbjct: 179 IPAD-HVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADP 237

Query: 157 RKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICR 216
           R V +A +L++LSYQEA E+SYFGA VLHPRTI P+ ++ IP +I+N FN   PG +I  
Sbjct: 238 RVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAPGTLIGA 297

Query: 217 PPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276
              ++         PVKG + ++N+A+ NV G GM G+ G A+ +F A+   G +V++I+
Sbjct: 298 ESDED-------SLPVKGISNLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLIT 350

Query: 277 QASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFSA----SILS 322
           Q+SSE+S+ F VP+ +      ALE +F   L  G L         +I+S
Sbjct: 351 QSSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLLEPLEVEENLAIIS 400

Length = 819

>gnl|CDD|239790 cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH)

 Score =  287 bits (738), Expect = 8e-97
 Identities = 97/187 (51%), Positives = 126/187 (67%), Gaps = 2/187 (1%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G   +S    V+  GE  SA++L+A++ + G+D  W+D RE LIV          D   S
Sbjct: 110 GELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDARE-LIVTDGGYLNAVVDIELS 168

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           ++R++ WFS +    I+ TGFIAS P    TTL R+GSD+SAAI+ ALL A QV IWTDV
Sbjct: 169 KERIKAWFSSNGK-VIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDV 227

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVYSADPRKV +A +L +LSYQEA E+SYFGA VLHP+TI PV + +IPI+I+N FN  
Sbjct: 228 DGVYSADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPE 287

Query: 209 VPGIMIC 215
            PG +I 
Sbjct: 288 APGTLIS 294

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Length = 294

>gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism]

 Score =  278 bits (714), Expect = 4e-91
 Identities = 108/278 (38%), Positives = 150/278 (53%), Gaps = 9/278 (3%)

Query: 32  TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKR 91
           +    D ++  GE  SA +LAA +   G+D + +D R+  I   ++         +SE+R
Sbjct: 107 SPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERR 166

Query: 92  LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV 151
           L +          +  GF     D   TTL R GSD+SAA + A L A +V IWTDVDGV
Sbjct: 167 LLR--LLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGV 224

Query: 152 YSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
           Y+ADPR V +A +L  +SY+EA E++Y GA VLHPR + P MR  IP+ I+N FN   PG
Sbjct: 225 YTADPRIVPDARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPDAPG 284

Query: 212 IMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN 271
            +I      +          VKG A  DN+AL+ V G GM G+ G A  +FG + + G N
Sbjct: 285 TLITAETESDEP-------VVKGIALDDNVALITVSGPGMNGMVGFAARVFGILAEAGIN 337

Query: 272 VIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALN 309
           V +I+Q+ SE S+ F VPE +      AL  +  E L 
Sbjct: 338 VDLITQSISEVSISFTVPESDAPRALRALLEEKLELLA 375

Length = 447

>gnl|CDD|239776 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

 Score =  272 bits (699), Expect = 6e-91
 Identities = 83/187 (44%), Positives = 120/187 (64%), Gaps = 2/187 (1%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  ++     V+  GEL S+++++A +++ G+   W+D RE+ ++          D   S
Sbjct: 109 GELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDAREL-LLTDDGFLNAVVDLKLS 167

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           ++RL +  ++     ++  GFIAS  D   TTL R GSD+SAA++ ALL A +V IWTDV
Sbjct: 168 KERLAQLLAEH-GKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDV 226

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVY+ADPRKV +A +L+ LSY EA E++YFGA VLHPRTI P +R +IPI I+N FN  
Sbjct: 227 DGVYTADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPE 286

Query: 209 VPGIMIC 215
            PG +I 
Sbjct: 287 APGTLIS 293

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 293

>gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional

 Score =  246 bits (631), Expect = 1e-78
 Identities = 117/278 (42%), Positives = 160/278 (57%), Gaps = 18/278 (6%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN----QVDPDFSESEKRL 92
           D+++  GE  SA +L+  +R  GI    +   E  I+  T SN    +  P   ++ +R+
Sbjct: 123 DYILSFGERLSAPILSGALRDLGIKSVALTGGEAGII--TDSNFGNARPLP---KTYERV 177

Query: 93  EKWFSQSPSNTII--ATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDG 150
           ++         +I   TGFI  T + I TTL R GSD+SAAI+GA L A ++ IWTDVDG
Sbjct: 178 KERLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDG 237

Query: 151 VYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVP 210
           V + DPR V EA ++  +SY EA E+SYFGA VLHPRTI P M   IP+ ++N FN   P
Sbjct: 238 VMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFP 297

Query: 211 GIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGA 270
           G +I         D +     VK    I N+AL+N+ G GM GVPGTA  IF A+ + G 
Sbjct: 298 GTLITS-------DSESSKRVVKAVTLIKNVALINISGAGMVGVPGTAARIFSALAEEGV 350

Query: 271 NVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREAL 308
           NVIMISQ SSE ++   V E +++   +AL  +F E L
Sbjct: 351 NVIMISQGSSESNISLVVDEADLEKALKALRREFGEGL 388

Length = 465

>gnl|CDD|239767 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

 Score =  231 bits (593), Expect = 6e-76
 Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 2/177 (1%)

Query: 39  VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ 98
           ++  GE  SA++LAA +R  GI  + +D R+  I     ++        S +RL++  ++
Sbjct: 53  LLSFGERLSARLLAAALRDRGIKARSLDARQAGITT-DDNHGAARIIEISYERLKELLAE 111

Query: 99  SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRK 158
                 + TGFI    D   TTL R GSD+SAA + A L A +V IWTDVDG+Y+ADPR 
Sbjct: 112 I-GKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170

Query: 159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215
           V EA ++  +SY EA E++YFGA VLHPR + P  + +IPI ++N FN   PG +I 
Sbjct: 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPEAPGTLIT 227

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback-inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, one is a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD is the catalytic domain of the Methylomicrobium alcaliphilum ectoine AK, the first enzyme of the ectoine biosynthetic pathway, found in this bacterium, and several other halophilic/halotolerant bacteria. Length = 227

>gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase

 Score =  234 bits (600), Expect = 3e-74
 Identities = 94/268 (35%), Positives = 142/268 (52%), Gaps = 11/268 (4%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWM-DTREVLIVNPTSSNQVDPDFSESEKRLEK 94
            D ++  GE  SA +L+A + + G+    +      ++ +               +RLE 
Sbjct: 105 MDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARV-IIEILTERLEP 163

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
              +      +  GF  +T     TTL R GSD++AA++ A L+A +  I+TDVDG+Y+ 
Sbjct: 164 LLEEGII--PVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTT 221

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           DPR V +A  +  +SY+E  E++ FGA VLHPRT+ P MR  IPIV+++ FN   PG +I
Sbjct: 222 DPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNPEAPGTLI 281

Query: 215 CRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274
                 E E     +  VKG +   N A V V G GM G PG    +FGA+ + G NV +
Sbjct: 282 V-ASTKEME-----EPIVKGLSLDRNQARVTVSGLGMKG-PGFLARVFGALAEAGINVDL 334

Query: 275 ISQASSEHSVCFAVPEKEVKAVAEALES 302
           I+Q+SSE S+ F V +++       L+S
Sbjct: 335 ITQSSSETSISFTVDKEDADQAKTLLKS 362

Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer.The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis [Amino acid biosynthesis, Aspartate family]. Length = 441

>gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class

 Score =  205 bits (524), Expect = 3e-63
 Identities = 100/282 (35%), Positives = 142/282 (50%), Gaps = 15/282 (5%)

Query: 25  NVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVD-- 82
                  T    D +V HGE  S+ + +  +R  G+   W+D  E  I+  T  N  +  
Sbjct: 55  KAIRDAITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGII--TDDNFGNAK 112

Query: 83  PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQV 142
            D   +E+RL     +     ++  GF  +T     TTL R GSD++AA++ A L+A +V
Sbjct: 113 IDIIATEERLLPLLEEG--IIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRV 170

Query: 143 TIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIR 202
            I+TDV GVY+ DPR V  A  +  +SY+EA E++ FGA VLHPRT+ P MR  +PI +R
Sbjct: 171 DIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVR 230

Query: 203 NIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIF 262
           + F+    G +I      EN         VKG A   N+  V V G GM G  G    IF
Sbjct: 231 SSFDPE-EGTLITNS--MENPP------LVKGIALRKNVTRVTVHGLGMLGKRGFLARIF 281

Query: 263 GAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF 304
           GA+ +   NV +ISQ  SE S+   V E +      AL+ + 
Sbjct: 282 GALAERNINVDLISQTPSETSISLTVDETDADEAVRALKDQS 323

This model describes a subclass of aspartate kinases. These are mostly Lys-sensitive and not fused to homoserine dehydrogenase, unlike some Thr-sensitive and Met-sensitive forms. Homoserine dehydrogenase is part of Thr and Met but not Lys biosynthetic pathways. Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases [Amino acid biosynthesis, Aspartate family]. Length = 401

>gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated

 Score =  175 bits (447), Expect = 2e-51
 Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 16/256 (6%)

Query: 32  TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN--QVDPDFSESE 89
           + + TD +V HGEL S  +   ++R+ G+  +W D R+V+    T     + +PD +   
Sbjct: 105 SPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMR---TDDRFGRAEPDVAALA 161

Query: 90  KRLEKWFSQSPSNTIIAT-GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           +  ++      +  ++ T GFI S      TTL R GSD+SAA++   L A +V IWTDV
Sbjct: 162 ELAQEQLLPLLAEGVVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDV 221

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
            G+Y+ DPR V  A  +  +S++EA EM+ FGA VLHP T++P +R +IP+ + +  +  
Sbjct: 222 PGIYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPE 281

Query: 209 VPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDV 268
             G  IC    +            +  A   N  L+ +    M    G    +FG +   
Sbjct: 282 AGGTWICNDTENP--------PLFRAIALRRNQTLLTLHSLNMLHARGFLAEVFGILARH 333

Query: 269 GANVIMISQASSEHSV 284
             +V +I+  +SE SV
Sbjct: 334 KISVDLIT--TSEVSV 347

Length = 448

>gnl|CDD|239777 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

 Score =  168 bits (427), Expect = 3e-50
 Identities = 77/181 (42%), Positives = 104/181 (57%), Gaps = 5/181 (2%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDP---DFSESEKRLE 93
           D++V  GE  SA + +A +R  GI  + +D  E  I+   +     P    +    KRL 
Sbjct: 119 DYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLL 178

Query: 94  KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYS 153
               +     ++ TGFI +T D   TTL R GSD+SA I+GA L A ++ IW DVDGV +
Sbjct: 179 P-MLEDGKIPVV-TGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMT 236

Query: 154 ADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIM 213
           ADPR V EA  +  LSY EA E++YFGA VLHPRT+ P M   IP+ ++N FN   PG +
Sbjct: 237 ADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTL 296

Query: 214 I 214
           I
Sbjct: 297 I 297

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Length = 298

>gnl|CDD|239791 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

 Score =  167 bits (424), Expect = 1e-49
 Identities = 64/188 (34%), Positives = 104/188 (55%), Gaps = 2/188 (1%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  + +  D ++  GE  S+ + +  +R+ G+  +W D R VL  + +   +  PD +  
Sbjct: 106 GELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTD-SRFGRAAPDLNAL 164

Query: 89  EKRLEKWFSQSPSNTIIAT-GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
            +   K      + T++ T GFI ST     TTL R GSD+SAA++   L A ++ IWTD
Sbjct: 165 AELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTD 224

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           V G+Y+ DPR    A  ++ +S+ EA EM+ FGA VLHP T++P +R +IP+ + +  + 
Sbjct: 225 VAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDP 284

Query: 208 SVPGIMIC 215
              G +I 
Sbjct: 285 EAGGTLIT 292

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Length = 292

>gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

 Score =  165 bits (420), Expect = 1e-45
 Identities = 92/259 (35%), Positives = 127/259 (49%), Gaps = 30/259 (11%)

Query: 39  VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLE---KW 95
           V+G GEL S  + AA +  +G+D  W+D RE L   P       P+ SE  + L    +W
Sbjct: 122 VLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALP------QPNQSEWSQYLSVSCQW 175

Query: 96  ---------FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
                    F+  P+  +I  GFIA   D     L R GSD SAA   A L A +V IWT
Sbjct: 176 QSDPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWT 235

Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DV G++SA+P++V +A +L  L Y EA E++  GA VLHPR+I P     IP+ I +   
Sbjct: 236 DVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTER 295

Query: 207 LSVPGIMICRPPVDENEDEQIIDSP-VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAV 265
             + G  I         D      P VK  +  + + LV++E  GM    G    +F   
Sbjct: 296 PDLSGTSI---------DGDAEPVPGVKAISRKNGIVLVSMETIGMWQQVGFLADVFTLF 346

Query: 266 KDVGANVIMISQASSEHSV 284
           K  G +V +IS  SSE +V
Sbjct: 347 KKHGLSVDLIS--SSETNV 363

Length = 861

>gnl|CDD|236530 PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

 Score =  163 bits (414), Expect = 6e-45
 Identities = 70/164 (42%), Positives = 99/164 (60%), Gaps = 2/164 (1%)

Query: 39  VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ 98
           VVGHGE+WSA+++AA++ + G+   W+D R  L     +  QVD     S   L++  +Q
Sbjct: 125 VVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAERAAQPQVD--EGLSYPLLQQLLAQ 182

Query: 99  SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRK 158
            P   ++ TGFI+         L R+GSD+SA ++GAL    +VTIW+DV GVYSADPRK
Sbjct: 183 HPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRK 242

Query: 159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIR 202
           V +A +L  L   EA E++   A VLH RT+ PV   DI + +R
Sbjct: 243 VKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLR 286

Length = 810

>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed

 Score =  149 bits (379), Expect = 7e-42
 Identities = 91/290 (31%), Positives = 145/290 (50%), Gaps = 33/290 (11%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVDPDFSESE 89
           D ++  GE  S  +LA  ++  G+  +     +  I+  T S         +DP      
Sbjct: 67  DMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGII--TDSAHGKARITDIDPS----- 119

Query: 90  KRLEKWFSQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
            R+ +   +     + +  GF     D   TTL R GSD +A  + A L+A +  I+TDV
Sbjct: 120 -RIREALDE---GDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDV 175

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVY+ DPR V +A  L  +SY+E  E++  GA VLHPR++    +Y++P+ +R+ F+  
Sbjct: 176 DGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFS-D 234

Query: 209 VPGIMICRPPVDENEDEQIIDSP-VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
            PG +I        E+E+I++ P V G A   + A V V   G+   PG A  IFGA+ +
Sbjct: 235 NPGTLIT------GEEEEIMEQPVVTGIAFDKDEAKVTV--VGVPDKPGIAAQIFGALAE 286

Query: 268 VGANVIMISQASSEH---SVCFAVPEKEVKAVAEALESKFREALNAGRLS 314
              NV MI Q  SE     + F VP  +++   E LE + ++ + A  ++
Sbjct: 287 ANINVDMIVQNVSEDGKTDITFTVPRDDLEKALELLE-EVKDEIGAESVT 335

Length = 404

>gnl|CDD|239792 cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria

 Score =  139 bits (351), Expect = 5e-39
 Identities = 67/182 (36%), Positives = 98/182 (53%), Gaps = 7/182 (3%)

Query: 39  VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ------VDPDFSESEKRL 92
           V+  GEL S ++ AA +   G+  KW+D RE+L   PT   +         +   ++  L
Sbjct: 114 VLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGGETMNYLSARCESEYADALL 173

Query: 93  EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
           +K  +   +  II  GFIA         L R GSD SAA   A L+A +  IWTDV G++
Sbjct: 174 QKRLA-DGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLF 232

Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
           +A+P +V  A +L+ L Y EA E++  GA VLHPR I P  R +IP+V+R+     + G 
Sbjct: 233 TANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGT 292

Query: 213 MI 214
           +I
Sbjct: 293 LI 294

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 295

>gnl|CDD|239778 cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species

 Score =  132 bits (333), Expect = 2e-36
 Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 7/180 (3%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREV-LIVNPTSSN-QVDPDFSESEKRLEK 94
           D +   GE  +AQ++AA +   GID +++  ++  L+V     N Q+ P   ES ++++K
Sbjct: 113 DALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILP---ESYQKIKK 169

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
                    ++  GF   + +    T  R GSD + AI+    +A     +TDVDG+Y+A
Sbjct: 170 LRD--SDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAA 227

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           +PR V+    +  ++Y+E  E+SY G +V H   +IP +   IPI I+N  +   PG +I
Sbjct: 228 NPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLI 287

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. Length = 288

>gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

 Score =  124 bits (314), Expect = 5e-34
 Identities = 63/187 (33%), Positives = 98/187 (52%), Gaps = 18/187 (9%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVDPDFSES 88
            D ++  GE  SA +LA  + + GI    +   +  I+  T  +        +DP     
Sbjct: 64  LDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGIL--TDDHHGNARIIDIDP----- 116

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
            KR+ +   +   + ++  GF     D   TTL R GSD +A  + A L+A +  I+TDV
Sbjct: 117 -KRILEALEEG--DVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDV 173

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVY+ADPR V +A  L  +SY E  EM+  GA VLHPR++    +Y++P+ +R+ F+  
Sbjct: 174 DGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFS-E 232

Query: 209 VPGIMIC 215
            PG +I 
Sbjct: 233 NPGTLIT 239

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains. Length = 239

>gnl|CDD|236364 PRK09034, PRK09034, aspartate kinase; Reviewed

 Score =  129 bits (326), Expect = 5e-34
 Identities = 67/214 (31%), Positives = 105/214 (49%), Gaps = 19/214 (8%)

Query: 33  ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREV-LIVNPTSSN-QVDPDFSESEK 90
           +   D     GE  +A+++AA +   GI  +++D +E  +IV     N QV P   ES  
Sbjct: 109 DRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLP---ESYD 165

Query: 91  RLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDG 150
            L+K   +     ++  GF   T D    T  R GSD + AI+   ++A     +TDVDG
Sbjct: 166 NLKKL--RDRDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDG 223

Query: 151 VYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVP 210
           +Y+A+PR V     ++ ++Y+E  E+SY G +V H   +IP  R  IPI I+N  N   P
Sbjct: 224 IYAANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNPEDP 283

Query: 211 GIMICRPPVDENEDEQIIDSPV------KGFATI 238
           G +I        + +    +P+      KGF +I
Sbjct: 284 GTLI------VPDRDNKNKNPITGIAGDKGFTSI 311

Length = 454

>gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

 Score =  119 bits (301), Expect = 4e-32
 Identities = 63/180 (35%), Positives = 93/180 (51%), Gaps = 8/180 (4%)

Query: 32  TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT--SSNQVDPDFSESE 89
           T+  TD +   GE  S  ++AA + ++GI    +D  +    +P      ++      S 
Sbjct: 62  TDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITK---VST 118

Query: 90  KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVD 149
            RL+           I +GF  +       TL R GSD +AA++ A L+A ++ I TDVD
Sbjct: 119 DRLKSLLENG--ILPILSGFGGTDEKET-GTLGRGGSDSTAALLAAALKADRLVILTDVD 175

Query: 150 GVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSV 209
           GVY+ADPRKV +A +L  L+Y+EA E++Y GA VL P+   P  R  IP+ I N  N   
Sbjct: 176 GVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGA 235

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. Length = 248

>gnl|CDD|178166 PLN02551, PLN02551, aspartokinase

 Score =  124 bits (314), Expect = 5e-32
 Identities = 85/301 (28%), Positives = 151/301 (50%), Gaps = 30/301 (9%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV---NPTSSNQVDPDFSESEKRL 92
            D++V  GE  S ++ AA + K G+  +  D  ++  +   + T+++ ++  +    KRL
Sbjct: 165 RDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL 224

Query: 93  EKWFSQSPSNTIIATGFIA-STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV 151
              +   P+  ++ TGF+         TTL R GSD +A  +G  L   ++ +W DVDGV
Sbjct: 225 HGDWIDDPAVPVV-TGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGV 283

Query: 152 YSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
            + DPR    AV +  L++ EA E++YFGA VLHP+++ P    DIP+ ++N +N + PG
Sbjct: 284 LTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPTAPG 343

Query: 212 IMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN 271
            +I +     +  + ++ S V       N+ ++++  T M G  G    +F   +D+G +
Sbjct: 344 TLITK---TRDMSKAVLTSIVLK----RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGIS 396

Query: 272 VIMISQASSEHSV----------CFAVPEKEVKAVAEALESKFREALNAGRLSQFSASIL 321
           V ++  A+SE S+             + ++E+  + E LE      L  GR      SI+
Sbjct: 397 VDVV--ATSEVSISLTLDPSKLWSRELIQQELDHLVEELEKIAVVNLLQGR------SII 448

Query: 322 S 322
           S
Sbjct: 449 S 449

Length = 521

>gnl|CDD|236188 PRK08210, PRK08210, aspartate kinase I; Reviewed

 Score =  121 bits (307), Expect = 1e-31
 Identities = 75/268 (27%), Positives = 135/268 (50%), Gaps = 11/268 (4%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE-KRLEK 94
            D ++  GE+ S+ + + ++ +NGI    +   +  I+  T  N  +    E    R+ +
Sbjct: 71  QDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGII--TDDNFTNAKIIEVNPDRILE 128

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
              +   + ++  GF   T +   TTL R GSD +AA +G  L+A  V I+TDVDG+ +A
Sbjct: 129 ALEEG--DVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTA 186

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           DPR V +A +L  +SY E ++M+Y GA V+HPR +   M+ +IP+ IR+ ++   PG +I
Sbjct: 187 DPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYS-DSPGTLI 245

Query: 215 CRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274
                 +   + + +  + G A + N+  + V+             +F A+ + G +V  
Sbjct: 246 TSLGDAKGGID-VEERLITGIAHVSNVTQIKVKAKE--NAYDLQQEVFKALAEAGISVDF 302

Query: 275 ISQASSEHSVCFAVPEKEVKAVAEALES 302
           I+       V F V +++ +   E LE+
Sbjct: 303 IN--IFPTEVVFTVSDEDSEKAKEILEN 328

Length = 403

>gnl|CDD|239793 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

 Score =  115 bits (291), Expect = 9e-31
 Identities = 63/180 (35%), Positives = 99/180 (55%), Gaps = 6/180 (3%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE-SEKRLEK 94
            D ++  GE+ SA +L + +R  G+    +   +  I+  T  N  +    + + K++  
Sbjct: 69  LDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGIL--TDDNYSNAKIIKVNPKKILS 126

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
              +   + ++  GF   T D   TTL R GSD +AA +GA L A  V I+TDVDG+ +A
Sbjct: 127 ALKEG--DVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTA 184

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           DPR V  A IL  +SY E ++M++ GA V+HPR +   M+ +IPI IR+  +   PG +I
Sbjct: 185 DPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMS-ENPGTLI 243

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. Length = 244

>gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

 Score =  113 bits (286), Expect = 5e-30
 Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 18/187 (9%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVDPDFSES 88
            D ++  GE  S  +LA  + + GI    +   +  I+  T  +        +DPD    
Sbjct: 64  LDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGIL--TDGHHGKARIIDIDPD---- 117

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
             R+ +   +   + +I  GF     D   TTL R GSD SA  + A L A +  I+TDV
Sbjct: 118 --RIRELLEEG--DVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDV 173

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVY+ADPR V +A  L  +SY E  EM+  GA VLHPR++    +Y +P+ + + F+  
Sbjct: 174 DGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFS-E 232

Query: 209 VPGIMIC 215
            PG +I 
Sbjct: 233 EPGTLIT 239

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. Length = 239

>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional

 Score =  116 bits (293), Expect = 5e-29
 Identities = 70/213 (32%), Positives = 108/213 (50%), Gaps = 12/213 (5%)

Query: 102 NTIIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV 159
             ++  GF  I+ + +   TTL R GSD SA  + A L A    I+TDV GV + DPR V
Sbjct: 129 KVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLV 188

Query: 160 SEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPV 219
            EA ++  +S  E  E++  GA+VLHPR +     Y +P+V+R+ ++ + PG ++  PP 
Sbjct: 189 PEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWSDA-PGTLVTSPPP 247

Query: 220 DENEDEQI-IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278
                  + +  PV G    ++ A V +    +   PG A  +F  +   G NV +I Q+
Sbjct: 248 RPRSLGGLELGKPVDGVELDEDQAKVALL--RVPDRPGIAAQLFEELAAQGVNVDLIIQS 305

Query: 279 SSEHS---VCFAVPEKEVK---AVAEALESKFR 305
             E +   + F V E E+K   AVAEA+     
Sbjct: 306 IHEGNSNDIAFTVAENELKKAEAVAEAIAPALG 338

Length = 587

>gnl|CDD|153193 cd04921, ACT_AKi-HSDH-ThrA-like_1, ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

 Score =  103 bits (260), Expect = 4e-28
 Identities = 39/76 (51%), Positives = 49/76 (64%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL 300
           +AL+N+EGTGM GVPG A  IF A+   G NVI+ISQASSEHS+ F V E +     EAL
Sbjct: 1   VALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEHSISFVVDESDADKALEAL 60

Query: 301 ESKFREALNAGRLSQF 316
           E +F   + AG +   
Sbjct: 61  EEEFALEIKAGLIKPI 76

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains were shown to be involved in allosteric activation. Also included in this CD is the first of two ACT domains of a tetrameric, monofunctional, threonine-sensitive, AK found in Methanococcus jannaschii and other related archaeal species. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 80

>gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family

 Score =  108 bits (271), Expect = 6e-28
 Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 26/172 (15%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96
             VV  GE   A+ +A ++   G+    +D                       + +++  
Sbjct: 80  RIVVSLGERLGARAVALLLSDGGLPAVRLD-------------------LVDTEAIKELL 120

Query: 97  SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADP 156
                   + TGF         TTL R  SD  AA++   L A ++ I TDVDGVY+ADP
Sbjct: 121 EAG--VVPVITGFGGENDTGETTTLGRGSSDTLAALLAEALGADKLIILTDVDGVYTADP 178

Query: 157 RKVSEAVILRTLSYQEAWEMS-----YFGANVLHPRTIIPVMRYDIPIVIRN 203
           RK  +A ++  LSY EA E+        G  V HP  +    R  IP+ I N
Sbjct: 179 RKNPDAKLIPELSYDEAEELLAAGDVTGGMKVKHPAALKAARRGGIPVHIIN 230

This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-, Carbamate kinase EC:2.7.2.2. Length = 230

>gnl|CDD|235646 PRK05925, PRK05925, aspartate kinase; Provisional

 Score =  111 bits (278), Expect = 1e-27
 Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 6/175 (3%)

Query: 43  GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQS-PS 101
           GE  SA ++ A      +  ++++ R+V I+      +  PD +  +     W   +   
Sbjct: 109 GEDISASLICAYCCTYVLPLEFLEARQV-ILTDDQYLRAVPDLALMQ---TAWHELALQE 164

Query: 102 NTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVS 160
           + I I  GFI +      T L R GSDFSA+++  L +A +V I+TDV+G+Y+ DP+ + 
Sbjct: 165 DAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIK 224

Query: 161 EAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215
           +A ++  LS++E   ++ FGA VLHP  + P +R  IPI + + F+++  G  I 
Sbjct: 225 DAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIY 279

Length = 440

>gnl|CDD|236250 PRK08373, PRK08373, aspartate kinase; Validated

 Score =  108 bits (272), Expect = 3e-27
 Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 4/180 (2%)

Query: 22  FLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQV 81
            L N      +E+  D+++  GE  SA + A  +   GI  K +D  E+L    +  N  
Sbjct: 88  KLFNSRPDLPSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGN-A 146

Query: 82  DPDFSESEKRLEKWFSQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAH 140
             D  +S++ ++  +       + +  GFI +  +    TL R GSD+SA  +G LL A 
Sbjct: 147 FIDIKKSKRNVKILYELLERGRVPVVPGFIGNL-NGFRATLGRGGSDYSAVALGVLLNAK 205

Query: 141 QVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIV 200
            V I +DV+G+Y+ADP+ V  A ++  LSY EA   +  G   LH + I PV +  IPI+
Sbjct: 206 AVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPV-KGKIPII 264

Length = 341

>gnl|CDD|239780 cd04247, AAK_AK-Hom3, AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains

 Score =  106 bits (266), Expect = 1e-26
 Identities = 58/179 (32%), Positives = 102/179 (56%), Gaps = 2/179 (1%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDF-SESEKRLEKW 95
           D V+  GE  S + +AAV+R  G+D +++D   + +    S   +D  F  E  + L + 
Sbjct: 126 DLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHI-VDLDFSIEALDQTFYDELAQVLGEK 184

Query: 96  FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSAD 155
            +   +   + TGF  + P  + + + R  +D  AA+    L A ++ IW +VDG+++AD
Sbjct: 185 ITACENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTAD 244

Query: 156 PRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           PRKV  A +L +++ +EA E++Y+G+ V+HP T+  V++  IPI I+N+ N    G +I
Sbjct: 245 PRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENPRGEGTVI 303

Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Length = 306

>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit, putative

 Score = 89.1 bits (221), Expect = 3e-20
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 33  ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRL 92
           E+  D+++  GE  SA + A      GI+ K +D  ++        N    D  +S++  
Sbjct: 94  EALRDYILSLGERLSAVIFAE-----GINGKVVDPWDIFFAKGDFGN-AFIDIKKSKRNA 147

Query: 93  EKWFSQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV 151
           +  +    S  I +  GF  +  +    TL R GSD+SA  +G LL +  V I +DV+G+
Sbjct: 148 KILYEVLESGKIPVIPGFYGNL-NGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGI 206

Query: 152 YSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIV 200
           ++ADP+ V  A ++  LSY+E    +  G   L  +       Y IP++
Sbjct: 207 FTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPVL 255

This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between [Amino acid biosynthesis, Aspartate family]. Length = 327

>gnl|CDD|153164 cd04892, ACT_AK-like_2, ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

 Score = 78.7 bits (195), Expect = 8e-19
 Identities = 30/65 (46%), Positives = 39/65 (60%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
           ALV+V G GM G PG A  IF A+ + G N+IMISQ SSE ++ F V E +     +AL 
Sbjct: 1   ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEVNISFVVDEDDADKAVKALH 60

Query: 302 SKFRE 306
            +F  
Sbjct: 61  EEFFL 65

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli (EC), three different AK isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis (BS) isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as is a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium, and apparently, unique to cyanobacteria, are AKs with two tandem pairs of ACT domains, C-terminal to the catalytic domain. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD are the ACT domains of the Methylomicrobium alcaliphilum AK; the first enzyme of the ectoine biosynthetic pathway found in this bacterium and several other halophilic/halotolerant bacteria. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 65

>gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated

 Score = 83.3 bits (206), Expect = 7e-18
 Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 21/215 (9%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96
           D ++  GE  S  +LA  + K G   + +   +  IV     N       ++   + +  
Sbjct: 67  DVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHIDTS-TITELL 125

Query: 97  SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADP 156
            Q     +I  GF     +   TTL R GSD +A  +   L A +  I+TDVDGVY+ DP
Sbjct: 126 EQD--QIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDP 183

Query: 157 RKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICR 216
           R V  A  L  + +     M+  GA VLH  ++    ++ +P+ + + F           
Sbjct: 184 RVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSF----------- 232

Query: 217 PPVDENEDEQIID----SPVKGFATIDNLALVNVE 247
              +  E   I        V G A   +LAL+ VE
Sbjct: 233 ---EVGEGTLIKGEAGTQAVCGIALQRDLALIEVE 264

Length = 392

>gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional

 Score = 78.4 bits (194), Expect = 4e-16
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query: 232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEK 291
           V+      ++ +V V G GMAG PG A  IF A+ + G N+ MISQ SSE ++ F V E+
Sbjct: 389 VRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEE 448

Query: 292 EVKAVAEALESKFRE 306
           + +   + L  +F  
Sbjct: 449 DGERAVKVLHDEFIL 463

Length = 465

>gnl|CDD|153140 cd04868, ACT_AK-like, ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

 Score = 68.3 bits (168), Expect = 5e-15
 Identities = 26/60 (43%), Positives = 37/60 (61%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
           A V++ G GM G PG A  IF A+ + G NV MISQ+ SE ++ F V E +++   +AL 
Sbjct: 1   AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDLEKAVKALH 60

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli (EC), three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis (BS) isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as is a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium, and apparently, unique to cyanobacteria, are aspartokinases with two tandem pairs of ACT domains, C-terminal to the catalytic domain. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this AK family CD are the ACT domains of the Methylomicrobium alcaliphilum AK; the first enzyme of the ectoine biosynthetic pathway found in this bacterium and several other halophilic/halotolerant bacteria. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 60

>gnl|CDD|153196 cd04924, ACT_AK-Arch_2, ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 30/64 (46%), Positives = 42/64 (65%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL 300
           +A+V V G+GM G PG A  +FGA+   G NVIMISQ SSE+++ F V E +  A  +A+
Sbjct: 1   VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAV 60

Query: 301 ESKF 304
             +F
Sbjct: 61  HDEF 64

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66

>gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAE 298
           + LALV + G  ++   G A  +FG ++    N+ MI   +S H++CF VPE + + V +
Sbjct: 382 EGLALVALIGNNLSKACGVAKRVFGVLEPF--NIRMICYGASSHNLCFLVPESDAEQVVQ 439

Query: 299 ALESKFREA 307
           AL     E 
Sbjct: 440 ALHQNLFEG 448

Length = 448

>gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D +AA+    + A  +   T+VDGVY ADP+K  +A     +SY E  +    G  V+  
Sbjct: 135 DTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKK---GLKVMDA 191

Query: 187 RTIIPVMRYDIPIVIRNIFNLSVPG 211
             +    R  IPI+   +FN   PG
Sbjct: 192 TALTLCRRNKIPII---VFNGLKPG 213

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 229

>gnl|CDD|236364 PRK09034, PRK09034, aspartate kinase; Reviewed

 Score = 56.7 bits (138), Expect = 6e-09
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAV-PEKEVKAV 296
             +LA++ V G GM    G A  I  A+ +   N+ MI+Q SSE S+ F V  E   KAV
Sbjct: 382 EHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAV 441

Length = 454

>gnl|CDD|153189 cd04917, ACT_AKiii-LysC-EC_2, ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL 300
           LALV + G  ++   G    IF A++D+  NV MI   +S H++CF V E++   V + L
Sbjct: 1   LALVALIGNDISETAGVEKRIFDALEDI--NVRMICYGASNHNLCFLVKEEDKDEVVQRL 58

Query: 301 ESKFRE 306
            S+  E
Sbjct: 59  HSRLFE 64

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 64

>gnl|CDD|153188 cd04916, ACT_AKiii-YclM-BS_2, ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 21/64 (32%), Positives = 32/64 (50%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL 300
           LAL+ V G GM    G +     A+   G N+ MI+Q SSE S+   V  ++     +A+
Sbjct: 1   LALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAI 60

Query: 301 ESKF 304
             +F
Sbjct: 61  YEEF 64

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66

>gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional

 Score = 52.8 bits (128), Expect = 3e-08
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 146 TDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF 205
           T+VDGVY ADP+K  +A     L+Y E  E       V+    I       IPI+   +F
Sbjct: 156 TNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGL---KVMDATAISLARDNKIPII---VF 209

Query: 206 NLSVPG 211
           N++ PG
Sbjct: 210 NMNKPG 215

Length = 231

>gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and metabolism]

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 127 DFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           D +AA+    + A  +   T  VDGVY ADP+K  +A    TL+Y E  ++      V+ 
Sbjct: 142 DTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLK---VMD 198

Query: 186 PRTIIPVMRYDIPIVIRNIFN 206
           P          IPI++ NI  
Sbjct: 199 PTAFSLARDNGIPIIVFNINK 219

Length = 238

>gnl|CDD|153194 cd04922, ACT_AKi-HSDH-ThrA_2, ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPE-KEVKAVAEA 299
           L+++ + G GMAG PG A   F A+     N+  I+Q SSE ++   + E    KA+   
Sbjct: 1   LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAV 60

Query: 300 LESKF 304
            E  F
Sbjct: 61  HERFF 65

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains were shown to be involved in allosteric activation. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66

>gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D +AA+    + A  +   T+VDGVY+ADP+K  +A    T++Y EA +       V+  
Sbjct: 138 DTAAALRAIEINADVILKGTNVDGVYTADPKKNKDAKKYDTITYNEALKK---NLKVMDL 194

Query: 187 RTIIPVMRYDIPIVIRNIF 205
                    ++PIV+ NI 
Sbjct: 195 TAFALARDNNLPIVVFNID 213

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076 [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 232

>gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +AA+    + A  +   T VDGVY ADP+K   A     L+Y E       G  V+ 
Sbjct: 136 TDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---GLKVMD 192

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
                     ++PIV   +FN++ PG
Sbjct: 193 ATAFTLCRDNNLPIV---VFNINEPG 215

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 231

>gnl|CDD|239781 cd04248, AAK_AK-Ectoine, AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96
           + +   GE  SA   A +++  G++ +++D          S  +   D +  E+  E + 
Sbjct: 134 ELLASLGEAHSAFNTALLLQNRGVNARFVDL---------SGWRDSGDMTLDERISEAFR 184

Query: 97  SQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSAD 155
              P + + I TG+ A   + +     R  S+ + + +  L  A +  I  +   + SAD
Sbjct: 185 DIDPRDELPIVTGY-AKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSAD 242

Query: 156 PRKVSEAV---ILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
           P+ V E     I RT +Y  A +++  G   +HP+    + +  IP+ ++N F    PG 
Sbjct: 243 PKLVGEDKARPIGRT-NYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVKNTFEPDHPGT 301

Query: 213 MI 214
           +I
Sbjct: 302 LI 303

Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon. Length = 304

>gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +AA+    ++A  +   T VDG+Y  DP+K  +A  +  L++ EA +M   G  V+ 
Sbjct: 134 TDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMD 190

Query: 186 PRTIIPVMRYDIPIVIRNIF 205
                   +Y I I++ N F
Sbjct: 191 TEAFSICKKYGITILVINFF 210

Length = 231

>gnl|CDD|153195 cd04923, ACT_AK-LysC-DapG-like_2, ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK 303
           V++ G GM   PG A  +F A+ + G N+ MIS  +SE  +   V E + +    AL   
Sbjct: 3   VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS--TSEIKISCLVDEDDAEKAVRALHEA 60

Query: 304 F 304
           F
Sbjct: 61  F 61

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 250 GMAGVPGTANAIFGAVKDVGANVIMISQASSE-----HSVCFAVPEKEVKAVAEALESKF 304
           G+   PG    +FGA+ D G N+  ISQ++S        +   V E++++A  EAL+   
Sbjct: 6   GVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEALKKLL 65

Query: 305 R 305
            
Sbjct: 66  G 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|233711 TIGR02076, pyrH_arch, uridylate kinase, putative

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS 177
           D  AA++    +A  +   T+VDGVY  DP+K  +A     L+ +E  E+ 
Sbjct: 118 DAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIV 168

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 221

>gnl|CDD|239786 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS 177
           D  AA++   L A  +   T+VDGVYS DPRK  +A     LS  E  ++ 
Sbjct: 118 DAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIV 168

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 221

>gnl|CDD|153208 cd04936, ACT_AKii-LysC-BS-like_2, ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
           A V++ G GM   PG A  +F A+ + G N+ MIS  +SE  +   + E + +    AL 
Sbjct: 1   AKVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS--TSEIKISCLIDEDDAEKAVRALH 58

Query: 302 SKFR 305
             F 
Sbjct: 59  EAFE 62

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Conserved residues in the ACT domains have been shown to be involved in this concerted feedback inhibition. Also included in this CD are the AKs of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single AKs found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis strain 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans AKs are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. This CD includes the second ACT domain C-terminal to the AK catalytic domain of the alpha subunit and the second ACT domain of the beta subunit that lacks the AK catalytic domain. Unlike the C. glutamicum AK beta subunit, which is involved in feedback regulation, the B. subtilis AKII beta subunit is not. Cyanobacteria AKs are unique to this CD and they have a unique domain architecture with two tandem pairs of ACT domains, C-terminal to the catalytic AK domain. In this CD, the second and fourth cyanobacteria AK ACT domains are present. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63

>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed

 Score = 45.1 bits (108), Expect = 3e-05
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAE 298
           D++A V+V G GM   PG A  +F A+ + G N+ MIS  +SE  +   + EK ++    
Sbjct: 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS--TSEIKISVLIDEKYLELAVR 395

Query: 299 ALESKF 304
           AL   F
Sbjct: 396 ALHEAF 401

Length = 404

>gnl|CDD|236396 PRK09181, PRK09181, aspartate kinase; Validated

 Score = 43.8 bits (104), Expect = 8e-05
 Identities = 70/291 (24%), Positives = 123/291 (42%), Gaps = 35/291 (12%)

Query: 43  GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ-SPS 101
           GE  SA   A +++  G++ +++D           +   D D    ++R++K F     +
Sbjct: 146 GEAHSAFNTALLLQNRGVNARFVDL----------TGWDDDDPLTLDERIKKAFKDIDVT 195

Query: 102 NTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY---SADPR 157
             + I TG+ A   + +  T  R  S+ + + +  L  A +  I  +    Y   SADP+
Sbjct: 196 KELPIVTGY-AKCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKE----YHLSSADPK 250

Query: 158 KVSE--AV-ILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
            V E   V I RT +Y  A +++  G   +HP+    + +  IP+ I+N F    PG +I
Sbjct: 251 LVGEDKVVPIGRT-NYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKNTFEPEHPGTLI 309

Query: 215 CRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274
            +  V E    +II       A  D +  + V    M G  G    I   +      V  
Sbjct: 310 TKDYVSEQPRVEII-------AGSDKVFALEVFDQDMVGEDGYDLEILEILTR--HKVSY 360

Query: 275 ISQASSEHSVCFAVPE--KEVKAVAEALESKFREALNAGRLSQFSASILSQ 323
           IS+A++ +++   +    K +K V   LE ++  A    R     ++I S 
Sbjct: 361 ISKATNANTITHYLWGSLKTLKRVIAELEKRYPNAEVTVRKVAIVSAIGSN 411

Length = 475

>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
           A V++ G GM G PG A  +F A+ D G N+ MI  A+SE      V E +     +A+ 
Sbjct: 520 AKVSIVGAGMPGTPGVAARMFRALADAGINIEMI--ATSEIRTSCVVAEDDGVKALQAVH 577

Query: 302 SKFREALNA 310
             F  A   
Sbjct: 578 QAFGLAGEE 586

Length = 587

>gnl|CDD|153185 cd04913, ACT_AKii-LysC-BS-like_1, ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 254 VPGTANAIFGAVKDVGANVIMISQASSEHS---VCFAVPEKEVKAVAEALESKFREALNA 310
            PG A  IFGA+ +   NV MI Q  S      + F VP+ ++K     LE K ++ L A
Sbjct: 12  KPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPKSDLKKALAVLE-KLKKELGA 70

Query: 311 GRL 313
             +
Sbjct: 71  EEV 73

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Conserved residues in the ACT domains have been shown to be involved in this concerted feedback inhibition. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomonas aeruginosa, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. This CD includes the first ACT domain C-terminal to the AK catalytic domain of the alpha subunit and the first ACT domain of the beta subunit that lacks the AK catalytic domain. Unlike the C. glutamicum AK beta subunit, which is involved in feedback regulation, the B. subtilis AKII beta subunit is not. Cyanobacteria aspartokinases are unique to this CD and they have a unique domain architecture with two tandem pairs of ACT domains, C-terminal to the catalytic AK domain. In this CD, the first and third cyanobacteria AK ACT domains are present. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|222411 pfam13840, ACT_7, Family description

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 237 TIDNLALVNVEGTGMAG-VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKA 295
           + D    ++V G G+   VPG    I   + + G ++  IS   +  +    VPE++++ 
Sbjct: 2   SEDGWRKLSVVGPGLDFDVPGILAKITSPLAEAGISIFQIS---TYDTDYILVPEEDLEK 58

Query: 296 VAEALES 302
              AL  
Sbjct: 59  AVNALHE 65

The ACT domain is a structural motif of 70-90 amino acids that functions in the control of metabolism, solute transport and signal transduction. They are thus found in a variety of different proteins in a variety of different arrangements. In mammalian phenylalanine hydroxylase the domain forms no contacts but promotes an allosteric effect despite the apparent lack of ligand binding. Length = 65

>gnl|CDD|239775 cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis

 Score = 40.1 bits (95), Expect = 8e-04
 Identities = 11/38 (28%), Positives = 24/38 (63%)

Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRT 167
           +A++  L+ A  + + +DVDG+Y  +PR+  +A ++  
Sbjct: 148 SALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPE 185

G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requirement and the proline-triggered aggregation are greatly diminished and abolished, respectively, and more proline is needed for inhibition. Although plant and animal G5Ks are part of a bifunctional polypeptide, delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR; ProA); bacterial and yeast G5Ks are monofunctional single-polypeptide enzymes. In this CD, all three domain architectures are present: G5K, G5K+PUA, and G5K+G5PR. Length = 251

>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVP----EKEVK 294
            N+A +++ G GM G PG A  +F  + + G N+ MIS  +SE  V   +     +K ++
Sbjct: 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSEVKVSCVIDAEDGDKALR 403

Query: 295 AVAEALE 301
           AV EA E
Sbjct: 404 AVCEAFE 410

Length = 587

>gnl|CDD|235460 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional

 Score = 39.7 bits (94), Expect = 0.001
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRT 167
           D  +A++  L+ A  + + TDVDG+Y+ADPRK  +A ++  
Sbjct: 154 DTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPE 194

Length = 372

>gnl|CDD|223341 COG0263, ProB, Glutamate 5-kinase [Amino acid transport and metabolism]

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 12/39 (30%), Positives = 25/39 (64%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165
           D  +A++  L+ A  + + +D+DG+Y A+PR   +A ++
Sbjct: 152 DTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLI 190

Length = 369

>gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165
           D  +A++  L+ A  + + TDVDG+Y ADPR   +A ++
Sbjct: 146 DTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLI 184

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family [Amino acid biosynthesis, Glutamate family]. Length = 363

>gnl|CDD|239788 cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE 172
           +D  A ++  ++ A  +    D DG+Y+ADP+K  +A  +  +S  E
Sbjct: 163 TDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAE 209

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 262

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	327
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	100.0
PLN02551	521	aspartokinase	100.0
PRK09034	454	aspartate kinase; Reviewed	100.0
PRK06291	465	aspartate kinase; Provisional	100.0
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	100.0
PRK09181	475	aspartate kinase; Validated	100.0
PRK09084	448	aspartate kinase III; Validated	100.0
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	100.0
PRK05925	440	aspartate kinase; Provisional	100.0
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	100.0
KOG0456	559	consensus Aspartate kinase [Amino acid transport a	100.0
PRK08841	392	aspartate kinase; Validated	100.0
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	100.0
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	100.0
PRK06635	404	aspartate kinase; Reviewed	100.0
PRK07431	587	aspartate kinase; Provisional	100.0
PRK08210	403	aspartate kinase I; Reviewed	100.0
cd04245	288	AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Ki	100.0
cd04258	292	AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Ki	100.0
cd04257	294	AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfa	100.0
cd04243	293	AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kina	100.0
PRK08373	341	aspartate kinase; Validated	100.0
cd04247	306	AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfa	100.0
cd04244	298	AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kina	100.0
cd04259	295	AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Super	100.0
cd04248	304	AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase S	100.0
TIGR02078	327	AspKin_pair Pyrococcus aspartate kinase subunit, p	100.0
cd04261	239	AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kina	100.0
cd04260	244	AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase	100.0
cd04234	227	AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK)	100.0
cd04246	239	AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kina	100.0
cd02115	248	AAK Amino Acid Kinases (AAK) superfamily, catalyti	99.97
PRK14558	231	pyrH uridylate kinase; Provisional	99.93
cd04242	251	AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K	99.93
cd04239	229	AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-lik	99.92
PF00696	242	AA_kinase: Amino acid kinase family Match to Gluta	99.92
PRK00358	231	pyrH uridylate kinase; Provisional	99.92
PRK12314	266	gamma-glutamyl kinase; Provisional	99.92
PRK14557	247	pyrH uridylate kinase; Provisional	99.9
cd04254	231	AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbi	99.9
PRK13402	368	gamma-glutamyl kinase; Provisional	99.9
TIGR02075	233	pyrH_bact uridylate kinase. This protein, also cal	99.89
COG0528	238	PyrH Uridylate kinase [Nucleotide transport and me	99.88
PRK14556	249	pyrH uridylate kinase; Provisional	99.87
TIGR01027	363	proB glutamate 5-kinase. Bacterial ProB proteins h	99.86
PRK05429	372	gamma-glutamyl kinase; Provisional	99.86
cd04253	221	AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMP	99.85
cd04241	252	AAK_FomA-like AAK_FomA-like: This CD includes a fo	99.84
TIGR02076	221	pyrH_arch uridylate kinase, putative. This family	99.83
COG0263	369	ProB Glutamate 5-kinase [Amino acid transport and	99.83
PRK14058	268	acetylglutamate/acetylaminoadipate kinase; Provisi	99.83
cd04250	279	AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase	99.81
TIGR00761	231	argB acetylglutamate kinase. This model describes	99.8
PRK00942	283	acetylglutamate kinase; Provisional	99.79
cd04249	252	AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kina	99.79
PTZ00489	264	glutamate 5-kinase; Provisional	99.79
cd04238	256	AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate	99.77
cd04256	284	AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase	99.77
PLN02512	309	acetylglutamate kinase	99.76
CHL00202	284	argB acetylglutamate kinase; Provisional	99.75
cd04251	257	AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kina	99.75
PLN02418	718	delta-1-pyrroline-5-carboxylate synthase	99.75
cd04255	262	AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes th	99.73
COG1608	252	Predicted archaeal kinase [General function predic	99.65
TIGR01092	715	P5CS delta l-pyrroline-5-carboxylate synthetase. T	99.65
COG0548	265	ArgB Acetylglutamate kinase [Amino acid transport	99.65
cd04235	308	AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot	99.55
PRK12353	314	putative amino acid kinase; Reviewed	99.55
cd04236	271	AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NA	99.54
cd04252	248	AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutam	99.52
cd04915	66	ACT_AK-Ectoine_2 ACT domains located C-terminal to	99.52
KOG1154	285	consensus Gamma-glutamyl kinase [Amino acid transp	99.5
TIGR00746	310	arcC carbamate kinase. The seed alignment for this	99.49
cd04918	65	ACT_AK1-AT_2 ACT domains located C-terminal to the	99.47
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	99.46
cd04237	280	AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG)	99.45
PRK05279	441	N-acetylglutamate synthase; Validated	99.44
PRK12686	312	carbamate kinase; Reviewed	99.43
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	99.42
cd04921	80	ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc	99.42
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	99.39
TIGR01890	429	N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi	99.37
cd04917	64	ACT_AKiii-LysC-EC_2 ACT domains located C-terminal	99.37
cd04920	63	ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AK	99.36
PRK12454	313	carbamate kinase-like carbamoyl phosphate syntheta	99.36
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	99.35
PRK12354	307	carbamate kinase; Reviewed	99.34
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	99.31
PRK06291	465	aspartate kinase; Provisional	99.3
cd04240	203	AAK_UC AAK_UC: Uncharacterized (UC) amino acid kin	99.29
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	99.26
PRK09411	297	carbamate kinase; Reviewed	99.25
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	99.25
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	99.18
PRK12352	316	putative carbamate kinase; Reviewed	99.17
PRK09034	454	aspartate kinase; Reviewed	99.15
PRK09084	448	aspartate kinase III; Validated	99.12
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	99.07
PRK04531	398	acetylglutamate kinase; Provisional	99.05
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	99.05
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	99.05
cd04923	63	ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-	99.03
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	98.98
PLN02825	515	amino-acid N-acetyltransferase	98.95
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	98.95
PRK07431	587	aspartate kinase; Provisional	98.93
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	98.92
PRK08210	403	aspartate kinase I; Reviewed	98.9
PRK06635	404	aspartate kinase; Reviewed	98.87
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	98.85
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	98.75
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	98.74
COG2054	212	Uncharacterized archaeal kinase related to asparto	98.68
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	98.65
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	98.59
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	98.55
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	98.55
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	98.55
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	98.53
COG0549	312	ArcC Carbamate kinase [Amino acid transport and me	98.4
cd04914	67	ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela	98.28
PLN02551	521	aspartokinase	98.22
cd04910	71	ACT_AK-Ectoine_1 ACT domains located C-terminal to	97.61
PRK05925	440	aspartate kinase; Provisional	97.53
cd04911	76	ACT_AKiii-YclM-BS_1 ACT domains located C-terminal	97.0
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	96.98
PRK09181	475	aspartate kinase; Validated	96.94
COG3830	90	ACT domain-containing protein [Signal transduction	96.86
COG3603	128	Uncharacterized conserved protein [Function unknow	96.17
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.08
KOG2436	520	consensus Acetylglutamate kinase/acetylglutamate s	96.06
PRK08841	392	aspartate kinase; Validated	95.95
PRK04435	147	hypothetical protein; Provisional	95.75
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	95.26
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	94.64
cd02116	60	ACT ACT domains are commonly involved in specifica	94.55
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	94.36
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	94.27
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	93.77
KOG0456	559	consensus Aspartate kinase [Amino acid transport a	93.34
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	92.69
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	92.66
PRK00194	90	hypothetical protein; Validated	92.23
COG4747	142	ACT domain-containing protein [General function pr	92.11
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	92.05
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	91.88
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	91.83
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	91.79
PRK11589	190	gcvR glycine cleavage system transcriptional repre	91.77
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	91.63
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	91.19
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	91.05
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	90.62
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	90.42
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	90.35
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	87.54
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	87.23
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	86.76
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	86.39
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	86.14
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	86.03
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	85.08
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	84.93
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	84.69
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	83.66
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	83.04
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	82.98
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	82.4
COG1058	255	CinA Predicted nucleotide-utilizing enzyme related	81.84
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	81.39
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	80.82
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	80.68
PRK11589	190	gcvR glycine cleavage system transcriptional repre	80.66
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	80.63
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	80.49
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	80.15

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=100.00  E-value=3.4e-61  Score=472.36  Aligned_cols=287  Identities=39%  Similarity=0.587  Sum_probs=260.1

Q ss_pred             CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecC
Q 020388           29 GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG  108 (327)
Q Consensus        29 ~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~G  108 (327)
                      ++.+++.+|+++|+||++|+.+|+.+|+++|++|.+++++++++++++.++++.+....+...+..+++  .+.|||++|
T Consensus       104 ~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~~~~~~~l~~~~~--~~~v~Vv~G  181 (447)
T COG0527         104 GEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLE--EGKVPVVAG  181 (447)
T ss_pred             cCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccccccchhhhhhhHHHHhc--CCcEEEecC
Confidence            678999999999999999999999999999999999999999999988888877766455443766776  889999999


Q ss_pred             ceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhh
Q 020388          109 FIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRT  188 (327)
Q Consensus       109 fi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a  188 (327)
                      |+|.+++|+++|||||||||+|++||++|+|+++.||||||||||+|||++|+|++|++|||+||.||+++|++|+||+|
T Consensus       182 F~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHpra  261 (447)
T COG0527         182 FQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLGAKVLHPRA  261 (447)
T ss_pred             ceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHCCchhcCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhC
Q 020388          189 IIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDV  268 (327)
Q Consensus       189 ~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~  268 (327)
                      ++||++++||++|+|+++|+.+||+|..+..+.       ...+++|+..+++++|++.|..|...+|+.+++|..|+++
T Consensus       262 v~pa~~~~Ip~~i~~t~~p~~~GTlI~~~~~~~-------~~~v~gIa~~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~  334 (447)
T COG0527         262 VEPAMRSGIPLRIKNTFNPDAPGTLITAETESD-------EPVVKGIALDDNVALITVSGPGMNGMVGFAARVFGILAEA  334 (447)
T ss_pred             HHHHHhcCCcEEEEecCCCCCCceEEecCCcCC-------CCceEEEEeCCCeEEEEEEccCccccccHHHHHHHHHHHc
Confidence            999999999999999999998999998875432       2578999999999999999999999999999999999999


Q ss_pred             CCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCCCCc--eeEEEEeecc
Q 020388          269 GANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLS--QFSASILSQD  324 (327)
Q Consensus       269 gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~--~~~~~~~~~~  324 (327)
                      ||+|+||+|+.++.+++|++++.+..++.+.||+.+.....+-.+.  --.++|+|..
T Consensus       335 ~i~v~~I~q~~~~~~i~~~v~~~~~~~a~~~l~~~~~~~~~~v~~~~~~a~vsiVG~g  392 (447)
T COG0527         335 GINVDLITQSISEVSISFTVPESDAPRALRALLEEKLELLAEVEVEEGLALVSIVGAG  392 (447)
T ss_pred             CCcEEEEEeccCCCeEEEEEchhhHHHHHHHHHHHHhhhcceEEeeCCeeEEEEEccc
Confidence            9999999999999999999999999999999999987655411111  1456666643

>PLN02551 aspartokinase

Probab=100.00  E-value=1.9e-60  Score=475.72  Aligned_cols=290  Identities=27%  Similarity=0.427  Sum_probs=252.8

Q ss_pred             HHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHH
Q 020388           16 IRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK   90 (327)
Q Consensus        16 i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~   90 (327)
                      +...++.|+++++     ++++++.+|+++|+||+||+++|+.+|+++|+++.+++++++++++++.++++.++ ..+.+
T Consensus       140 ~~~~~~~l~~ll~~i~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~-~~~~~  218 (521)
T PLN02551        140 VEKLLDELEQLLKGIAMMKELTPRTRDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADIL-EATYP  218 (521)
T ss_pred             HHHHHHHHHHHHHhhhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchh-hhhHH
Confidence            4556777777765     47789999999999999999999999999999999999999988888888877775 34445


Q ss_pred             HHHHHhhc---CCCceEEecCceecC-CCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEe
Q 020388           91 RLEKWFSQ---SPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILR  166 (327)
Q Consensus        91 ~i~~~l~~---~~~~vpVv~Gfi~~~-~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~  166 (327)
                      .+++.+..   ..+.|||++||+|.+ .+|.+||||||||||+|+.+|++|+|+++.+|||||||||+||+++|+|++++
T Consensus       219 ~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~  298 (521)
T PLN02551        219 AVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVP  298 (521)
T ss_pred             HHHHHHHhhhccCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEec
Confidence            56555431   245899999999999 89999999999999999999999999999999999999999999999999999


Q ss_pred             ecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCC-C----------Cc---------ch--
Q 020388          167 TLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPV-D----------EN---------ED--  224 (327)
Q Consensus       167 ~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~-~----------~~---------~~--  224 (327)
                      +|||+||.||+++|++||||+|+.||++++||++|+|+++|+.+||+|..... +          .+         .|  
T Consensus       299 ~lsy~Ea~elA~~GakVlhp~ai~pa~~~~Ipi~vknt~~p~~~GT~I~~~~~~~~~~v~~It~~~~v~li~i~~~~m~~  378 (521)
T PLN02551        299 YLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPTAPGTLITKTRDMSKAVLTSIVLKRNVTMLDIVSTRMLG  378 (521)
T ss_pred             ccCHHHHHHHHhCCCcccCHHHHHHHHHCCceEEEEecCCCCCCCcEEecccccCCCcccceecCCCeEEEEEecCCCCC
Confidence            99999999999999999999999999999999999999999999999964321 0          00         00  


Q ss_pred             -------------------------------------hhh-------------hcCCeeeEEeecCeeEEEeecCCCCCc
Q 020388          225 -------------------------------------EQI-------------IDSPVKGFATIDNLALVNVEGTGMAGV  254 (327)
Q Consensus       225 -------------------------------------~~~-------------~~~~v~~i~~~~~la~IsIvG~~~~~~  254 (327)
                                                           ...             .-..+..+.+.+++++|++||. |..+
T Consensus       379 ~~g~~arvf~~l~~~~I~Vd~IssSe~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~~~V~v~~~vAiISvVG~-~~~~  457 (521)
T PLN02551        379 QYGFLAKVFSTFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHLVEELEKIAVVNLLQGRSIISLIGN-VQRS  457 (521)
T ss_pred             cccHHHHHHHHHHHcCCcEEEEeccCCEEEEEEehhHhhhhhhHHHHHHHHHHHhhcCCeEEEeCCEEEEEEEcc-CCCC
Confidence                                                 000             0012346888899999999998 7789


Q ss_pred             ccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388          255 PGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (327)
Q Consensus       255 ~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (327)
                      +++++++|++|+++||||.||+|++|+.+|||+|+++|.++++++||++|+..
T Consensus       458 ~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH~~Ff~~  510 (521)
T PLN02551        458 SLILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALHSAFFEG  510 (521)
T ss_pred             ccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999864

>PRK09034 aspartate kinase; Reviewed

Probab=100.00  E-value=4.6e-56  Score=440.23  Aligned_cols=296  Identities=24%  Similarity=0.394  Sum_probs=254.3

Q ss_pred             HHHHHHHHHhhhcCCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHH
Q 020388           16 IRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKW   95 (327)
Q Consensus        16 i~~~~~~l~~~~~~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   95 (327)
                      +..+++.|..++ .+.+++.+|.++|+||+||+.+|+.+|+++|+++++++++++++++++.++++.++.. +.+.+..+
T Consensus        93 ~~~~l~~l~~~~-~~~~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~~-~~~~~~~~  170 (454)
T PRK09034         93 IEEILEHLANLA-SRNPDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPE-SYDNLKKL  170 (454)
T ss_pred             HHHHHHHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcHh-hHHHHHHH
Confidence            344444555444 3577889999999999999999999999999999999999998888888887666543 45677766


Q ss_pred             hhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHH
Q 020388           96 FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE  175 (327)
Q Consensus        96 l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~  175 (327)
                      +.  .+.|||++||+|.+.+|++++||||||||+|+++|++|+|+++.+|||||||||+|||++|+|+++++|||+||.|
T Consensus       171 ~~--~~~v~Vv~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~e  248 (454)
T PRK09034        171 RD--RDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRE  248 (454)
T ss_pred             Hh--cCCEEEecCccccCCCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHH
Confidence            65  6689999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcc
Q 020388          176 MSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVP  255 (327)
Q Consensus       176 l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~  255 (327)
                      |+++|+++|||+|+.||++++||++|+|+++|+.+||+|.......      ....+++|+..+|+++|++.|.+|.+.+
T Consensus       249 la~~Gakvlhp~ai~~a~~~~Ipi~v~~~~~p~~~GT~I~~~~~~~------~~~~Vk~It~~~~i~~Itv~~~~~~~~~  322 (454)
T PRK09034        249 LSYAGFSVFHDEALIPAYRGGIPINIKNTNNPEDPGTLIVPDRDNK------NKNPITGIAGDKGFTSIYISKYLMNREV  322 (454)
T ss_pred             HHhCCcccCCHHHHHHHHHcCCCEEEEcCCCCCCCccEEEeccccC------ccccceEEEecCCEEEEEEccCCCCCCc
Confidence            9999999999999999999999999999999998999997543211      1146999999999999999999899999


Q ss_pred             cHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHH-HHHHHHHHhhhcCCCCce----eEEEEeec
Q 020388          256 GTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVA-EALESKFREALNAGRLSQ----FSASILSQ  323 (327)
Q Consensus       256 ~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av-~~Lh~~f~~~~~~~~~~~----~~~~~~~~  323 (327)
                      ++++++|+.|+++||+|+|++  +++.++||++++++.+++. +.|.++|..++....+..    ..++|+|.
T Consensus       323 g~~a~if~~la~~~I~Vd~i~--ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~~~~~va~VsivG~  393 (454)
T PRK09034        323 GFGRKVLQILEDHGISYEHMP--SGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGE  393 (454)
T ss_pred             cHHHHHHHHHHHcCCeEEEEc--CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEEEeCCEEEEEEECC
Confidence            999999999999999999996  6789999999999987765 666666655543323322    44666654

>PRK06291 aspartate kinase; Provisional

Probab=100.00  E-value=9.8e-56  Score=439.43  Aligned_cols=300  Identities=40%  Similarity=0.614  Sum_probs=264.6

Q ss_pred             HHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCC---ch
Q 020388           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---FS   86 (327)
Q Consensus        15 ~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~---~~   86 (327)
                      .++.+++.|++++.     ++++++.+|.++|+||+||+++++.+|+++|+++.+++++++++++++.++.+.++   +.
T Consensus        96 ~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~~~~~  175 (465)
T PRK06291         96 TIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYE  175 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeechhhHH
Confidence            45666777777765     36788999999999999999999999999999999999999977787777765543   34


Q ss_pred             HHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEe
Q 020388           87 ESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILR  166 (327)
Q Consensus        87 ~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~  166 (327)
                      ...+.++.+++  .+.|||++||+|.+++|.++|+||||||++|+++|.+|+|+++++||||||||++||+++|+|++++
T Consensus       176 ~~~~~~~~ll~--~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~  253 (465)
T PRK06291        176 RVKERLEPLLK--EGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIP  253 (465)
T ss_pred             HHHHHHHHHhh--cCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEcc
Confidence            44456676776  7899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEe
Q 020388          167 TLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV  246 (327)
Q Consensus       167 ~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsI  246 (327)
                      +++|+||.+++++|++++||+|+.+|+++|||++|+|+++|+.+||+|......       ....+++|++.+++++|++
T Consensus       254 ~l~~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~~~gt~i~~~~~~-------~~~~V~~It~~~~valIsI  326 (465)
T PRK06291        254 KISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFPGTLITSDSES-------SKRVVKAVTLIKNVALINI  326 (465)
T ss_pred             ccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEecCCCCCCCceEEEecccc-------cCcccceEEeeCCEEEEEE
Confidence            999999999999999999999999999999999999999999899999764321       1246899999999999999


Q ss_pred             ecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCCCCce----eEEEEee
Q 020388          247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ----FSASILS  322 (327)
Q Consensus       247 vG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~----~~~~~~~  322 (327)
                      +|.+|.+.+++.+++|++|+++||+|+||+|++|+.+++|+|++++.+++++.||+.|..+. ...++.    ..++|+|
T Consensus       327 ~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~~~d~~~av~~L~~~~~~~~-~~~i~~~~~~a~IsvvG  405 (465)
T PRK06291        327 SGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNISLVVDEADLEKALKALRREFGEGL-VRDVTFDKDVCVVAVVG  405 (465)
T ss_pred             eCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceEEEEEeHHHHHHHHHHHHHHHHHhc-CcceEEeCCEEEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999987431 122222    4477777


Q ss_pred             cc
Q 020388          323 QD  324 (327)
Q Consensus       323 ~~  324 (327)
                      ..
T Consensus       406 ~g  407 (465)
T PRK06291        406 AG  407 (465)
T ss_pred             CC
Confidence            53

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=100.00  E-value=2.7e-55  Score=460.38  Aligned_cols=301  Identities=39%  Similarity=0.655  Sum_probs=272.1

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHH
Q 020388           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES   88 (327)
Q Consensus        14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~   88 (327)
                      +.|+..|+.|++++.     ++++++.+|+++|+||+||+.+++.+|+++|+++.+++++++++ +++.++++.+++..+
T Consensus        92 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~-t~~~~~~~~~~~~~~  170 (819)
T PRK09436         92 AKVDQEFAQLKDILHGISLLGECPDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLL-ADGHYLESTVDIAES  170 (819)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeEE-ecCCCCCceechHhh
Confidence            467777888888765     46789999999999999999999999999999999999999855 566777788888888


Q ss_pred             HHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeec
Q 020388           89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (327)
Q Consensus        89 ~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~i  168 (327)
                      ++.+++++.. .+.|||++||+|.+.+|.++|+||||||++|+++|.+|+|+++++|||||||||+||+.+|+|++++++
T Consensus       171 ~~~i~~~~~~-~~~v~Vv~Gfig~~~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~i  249 (819)
T PRK09436        171 TRRIAASFIP-ADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSL  249 (819)
T ss_pred             HHHHHHHHhc-CCcEEEecCcccCCCCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEe
Confidence            8888888752 478999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeec
Q 020388          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEG  248 (327)
Q Consensus       169 s~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG  248 (327)
                      +|+|+.+|+++|++++||+|+.+|+++|||++|+|+++|+.+||+|+.+.. .      ..+.+++|++.+|+++|+++|
T Consensus       250 sy~ea~el~~~G~kvlhp~a~~~a~~~~Ipi~i~n~~~p~~~GT~I~~~~~-~------~~~~Vk~It~~~dvalIsV~G  322 (819)
T PRK09436        250 SYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAPGTLIGAESD-E------DSLPVKGISNLNNMAMFNVSG  322 (819)
T ss_pred             cHHHHHHHHhcCCccchHHHHHHHHHCCceEEEccCCCCCCCceEEEecCc-c------cccccceEEEeCCEEEEEEEc
Confidence            999999999999999999999999999999999999999999999976421 1      234699999999999999999


Q ss_pred             CCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCCCCcee-------EEEEe
Q 020388          249 TGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQF-------SASIL  321 (327)
Q Consensus       249 ~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~~-------~~~~~  321 (327)
                      .+|...|++++++|+.|+++||+|+|++|++|+.+|||+|++++.+++++.||+.|..++....++.+       .++|+
T Consensus       323 ~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~av~~L~~~f~~el~~~~~~~i~~~~~valIsvv  402 (819)
T PRK09436        323 PGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLLEPLEVEENLAIISVV  402 (819)
T ss_pred             CCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999877775555443       35666


Q ss_pred             ec
Q 020388          322 SQ  323 (327)
Q Consensus       322 ~~  323 (327)
                      |.
T Consensus       403 G~  404 (819)
T PRK09436        403 GD  404 (819)
T ss_pred             cc
Confidence            64

>PRK09181 aspartate kinase; Validated

Probab=100.00  E-value=1.8e-55  Score=435.94  Aligned_cols=282  Identities=21%  Similarity=0.343  Sum_probs=237.6

Q ss_pred             HHHHHHHHHhhhc------CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHH
Q 020388           16 IRSTYNFLSNVDS------GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE   89 (327)
Q Consensus        16 i~~~~~~l~~~~~------~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~   89 (327)
                      ++..++.+.+++.      ++++++.+|.++|+||+||+++|+.+|+++|+++.++++..+.. .+        ++ .+.
T Consensus       113 ~~~~l~~l~~~l~~~~~~l~e~~~~~~D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~-~~--------~~-~~~  182 (475)
T PRK09181        113 ARACLIDLQRLCAYGHFSLDEHLLTVREMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDD-DD--------PL-TLD  182 (475)
T ss_pred             HHHHHHHHHHHHhcCcchhhccChhHhHHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccC-Cc--------cc-chH
Confidence            4677777777664      57899999999999999999999999999999999998866532 11        11 134


Q ss_pred             HHHHHHhhc--CCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCC--CCCeEE
Q 020388           90 KRLEKWFSQ--SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV--SEAVIL  165 (327)
Q Consensus        90 ~~i~~~l~~--~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~--~~a~~i  165 (327)
                      +++++.+..  ..+.|||++||+ .+.+|.+||||||||||+|+.+|++|+|+++.+||||+ |||+|||++  |+|+++
T Consensus       183 ~~i~~~l~~~~~~~~v~Vv~GF~-~~~~G~itTLGRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i  260 (475)
T PRK09181        183 ERIKKAFKDIDVTKELPIVTGYA-KCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPI  260 (475)
T ss_pred             HHHHHHHhhhccCCcEEEecCCc-CCCCCCEEecCCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEc
Confidence            666666653  246899999996 57789999999999999999999999999999999997 999999999  689999


Q ss_pred             eecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCC--C-C--------Cc---------ch-
Q 020388          166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPP--V-D--------EN---------ED-  224 (327)
Q Consensus       166 ~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~--~-~--------~~---------~~-  224 (327)
                      ++|||+||.||+++|++||||+|++||++++||++|+|+++|+.+||+|....  . +        .+         .+ 
T Consensus       261 ~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~nt~~p~~~GT~I~~~~~~~~~~ik~It~~~~~~~i~i~~~~~~  340 (475)
T PRK09181        261 GRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKNTFEPEHPGTLITKDYVSEQPRVEIIAGSDKVFALEVFDQDMV  340 (475)
T ss_pred             CccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCCCCCeEEecCcccccccceeEeccCCEEEEEEcCCCCC
Confidence            99999999999999999999999999999999999999999999999996431  0 0        00         00 


Q ss_pred             ------------------------------------h-h-------hhcCC--eeeEEeecCeeEEEeecCCCCCcccHH
Q 020388          225 ------------------------------------E-Q-------IIDSP--VKGFATIDNLALVNVEGTGMAGVPGTA  258 (327)
Q Consensus       225 ------------------------------------~-~-------~~~~~--v~~i~~~~~la~IsIvG~~~~~~~~v~  258 (327)
                                                          . .       .....  ...+. .+++|+|++||.+|. +||++
T Consensus       341 ~~~g~~~~if~~l~~~~i~v~~i~ss~~sis~~v~~~~~~~~~~~~~L~~~~~~~~i~-~~~~a~VsvVG~gm~-~~gv~  418 (475)
T PRK09181        341 GEDGYDLEILEILTRHKVSYISKATNANTITHYLWGSLKTLKRVIAELEKRYPNAEVT-VRKVAIVSAIGSNIA-VPGVL  418 (475)
T ss_pred             CcchHHHHHHHHHHHcCCeEEEEEecCcEEEEEEcCChHHHHHHHHHHHHhcCCceEE-ECCceEEEEeCCCCC-cccHH
Confidence                                                0 0       00001  12455 389999999999995 89999


Q ss_pred             HHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCC
Q 020388          259 NAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAG  311 (327)
Q Consensus       259 a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~  311 (327)
                      +++|++|++.||||.||+|++|+.+|||+|+++|.++|+++||++|+...+.+
T Consensus       419 ak~f~aL~~~~Ini~~i~qg~se~~Is~vV~~~d~~~Av~~lH~~f~~~~~~~  471 (475)
T PRK09181        419 AKAVQALAEAGINVLALHQSMRQVNMQFVVDEDDYEKAICALHEALVENHNHG  471 (475)
T ss_pred             HHHHHHHHHCCCCeEEEEecCCcceEEEEEeHHHHHHHHHHHHHHHhcCCCcc
Confidence            99999999999999999999999999999999999999999999998654433

>PRK09084 aspartate kinase III; Validated

Probab=100.00  E-value=7.7e-55  Score=430.65  Aligned_cols=284  Identities=29%  Similarity=0.486  Sum_probs=251.6

Q ss_pred             HHHHHHHHHHHhhhcC---CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHH
Q 020388           14 EFIRSTYNFLSNVDSG---HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK   90 (327)
Q Consensus        14 ~~i~~~~~~l~~~~~~---~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~   90 (327)
                      +.++.+++.|++++.+   +.+++.+|.++|+||+||+++++.+|+++|+++.+++++++++ +++.++++.+++..+..
T Consensus        84 ~~i~~~~~~l~~l~~~~~~~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~-t~~~~~~~~~~~~~~~~  162 (448)
T PRK09084         84 EEIERLLENITVLAEAASLATSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMR-TDDRFGRAEPDVAALAE  162 (448)
T ss_pred             HHHHHHHHHHHHHHHhhhhcCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEE-ecCCCCcccccHHHHHH
Confidence            3678889999998876   4678999999999999999999999999999999999999954 66678778888877766


Q ss_pred             HHHHHhhc--CCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeec
Q 020388           91 RLEKWFSQ--SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (327)
Q Consensus        91 ~i~~~l~~--~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~i  168 (327)
                      .+.+.+.+  ..+ |||++||+|.+.+|.++||||||||++|+++|++|+|+++++|||||||||+||+++|+|+++++|
T Consensus       163 ~~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~i  241 (448)
T PRK09084        163 LAQEQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEI  241 (448)
T ss_pred             HHHHHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccC
Confidence            65554432  245 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeec
Q 020388          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEG  248 (327)
Q Consensus       169 s~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG  248 (327)
                      +|+||.+|+++|++++||+++.+|++++||++|+|+++|+.+||+|.....        ....+++|+..+|+++|++.|
T Consensus       242 s~~ea~ela~~Ga~vlh~~~~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~--------~~~~v~~it~~~~i~lItv~~  313 (448)
T PRK09084        242 SFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPEAGGTWICNDTE--------NPPLFRAIALRRNQTLLTLHS  313 (448)
T ss_pred             CHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCceEEecCCC--------CCCeeEEEEeeCCEEEEEEec
Confidence            999999999999999999999999999999999999999989999976432        123699999999999999999


Q ss_pred             CCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccH-HHHHHHHHHHHHhhhc
Q 020388          249 TGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV-KAVAEALESKFREALN  309 (327)
Q Consensus       249 ~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~-~~av~~Lh~~f~~~~~  309 (327)
                      .+|.+.+++++++|+.|+++||+|+||++  |+.+|||++++++. .++...+.+++..++.
T Consensus       314 ~~~~~~~g~~a~if~~l~~~~I~Vd~I~s--se~sIs~~i~~~~~~~~~~~~~~~~l~~el~  373 (448)
T PRK09084        314 LNMLHARGFLAEVFGILARHKISVDLITT--SEVSVSLTLDTTGSTSTGDTLLTQALLTELS  373 (448)
T ss_pred             CCCCccccHHHHHHHHHHHcCCeEEEEec--cCcEEEEEEechhhhhhhhHHHHHHHHHHHh
Confidence            99999999999999999999999999994  68999999999884 3455555555555543

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=100.00  E-value=8.1e-54  Score=446.71  Aligned_cols=280  Identities=28%  Similarity=0.441  Sum_probs=252.9

Q ss_pred             HHHHHHHHHHHhhhcCCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHH
Q 020388           14 EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLE   93 (327)
Q Consensus        14 ~~i~~~~~~l~~~~~~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~   93 (327)
                      +.++..++.|++++.++++++.+|+++|+||+||+++|+.+|+++|+++.++++++++. +++. +.+.+++..++++++
T Consensus       100 ~~i~~~~~~l~~~l~~~~~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~-~~~~-~~~~i~~~~~~~~l~  177 (810)
T PRK09466        100 SRLISDLERLAALLDGGINDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLR-AERA-AQPQVDEGLSYPLLQ  177 (810)
T ss_pred             HHHHHHHHHHHHHhhccCCchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHhee-cCCC-CCcccchhhhHHHHH
Confidence            35777888899999889999999999999999999999999999999999999999844 4333 245566666778888


Q ss_pred             HHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHH
Q 020388           94 KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEA  173 (327)
Q Consensus        94 ~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea  173 (327)
                      +++....+.|||++||+|.+.+|.++|||||||||+|+.+|++|+|+++.+|||||||||+|||++|+|+++++|||+||
T Consensus       178 ~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea  257 (810)
T PRK09466        178 QLLAQHPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEA  257 (810)
T ss_pred             HHHhccCCeEEEeeCccccCCCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHH
Confidence            88874445899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCC
Q 020388          174 WEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAG  253 (327)
Q Consensus       174 ~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~  253 (327)
                      .||+++|++||||+|++||+++|||++|+|+|+|+.+||+|.....        ....++.|+..+|+++|++.|.++.+
T Consensus       258 ~ela~~GakVlHp~ti~pa~~~~Ipi~V~ntf~p~~~GT~I~~~~~--------~~~~v~~It~~~~v~~i~i~~~~~~g  329 (810)
T PRK09466        258 SELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPEQGSTRIERVLA--------SGTGARIVTSLDDVCLIELQVPASHD  329 (810)
T ss_pred             HHHHHcCccccCHHHHHHHHHcCCeEEEecCCCCCCCceEEecCcc--------cccceeeeeccCCEEEEEEecCCcCC
Confidence            9999999999999999999999999999999999999999975321        12357889999999999999988888


Q ss_pred             cccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHH
Q 020388          254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK  303 (327)
Q Consensus       254 ~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~  303 (327)
                      .+++.+++|+.|+++||+|+|++|++++.+++|.++.++.+++.+.|++.
T Consensus       330 ~~g~~~~if~~l~~~~I~v~~i~~~~s~~sis~~i~~~~~~~~~~~l~~~  379 (810)
T PRK09466        330 FKLAQKELDQLLKRAQLRPLAVGVHPDRQLLQLAYTSEVADSALKLLDDA  379 (810)
T ss_pred             cchHHHHHHHHHHHCCCeEEEEEecCCCcEEEEEEeHHHHHHHHHHHHhh
Confidence            89999999999999999999999988899999999999888888888774

>PRK05925 aspartate kinase; Provisional

Probab=100.00  E-value=2.2e-53  Score=417.82  Aligned_cols=284  Identities=25%  Similarity=0.384  Sum_probs=245.8

Q ss_pred             HHHHHHhhh-cCCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhh
Q 020388           19 TYNFLSNVD-SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFS   97 (327)
Q Consensus        19 ~~~~l~~~~-~~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~   97 (327)
                      ..+.|++++ .++.+++.+|+++|+||+||+++++.+|+++|+++.++++++++ .+++.++++.+++..+.+.+..+..
T Consensus        84 ~~~~L~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i-~t~~~~~~a~~~~~~~~~~~~~~~~  162 (440)
T PRK05925         84 WWERLEHFEDVEEISSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQVI-LTDDQYLRAVPDLALMQTAWHELAL  162 (440)
T ss_pred             HHHHHHHHHHhCcCCchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhE-eecCCccccccCHHHHHHHHHHhhc
Confidence            344455555 36778889999999999999999999999999999999999984 4666788788888777766666543


Q ss_pred             cCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHH
Q 020388           98 QSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS  177 (327)
Q Consensus        98 ~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~  177 (327)
                       ..+.|||++||+|.+.+|.+++|||||||++|+++|.+|+|+.+++|||||||||+||+.+|+|+++++++|+|+.+|+
T Consensus       163 -~~~~v~Vv~GF~g~~~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela  241 (440)
T PRK05925        163 -QEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLA  241 (440)
T ss_pred             -cCCcEEEecCcceeCCCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHH
Confidence             2568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCC----C-C--------Cc----------------------
Q 020388          178 YFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPP----V-D--------EN----------------------  222 (327)
Q Consensus       178 ~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~----~-~--------~~----------------------  222 (327)
                      ++|++++||+++++|+++|||++|+|+++|+.+||+|.+..    . .        .+                      
T Consensus       242 ~~Ga~vl~~~~~~~a~~~~Ipi~I~~~~~p~~~GT~i~~~~~~~~~~~~ik~It~~~~~~~i~v~~~~~~~~~~~~if~~  321 (440)
T PRK05925        242 SFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIYASDKEVSYEPRIKALSLKQNQALWSVDYNSLGLVRLEDVLGI  321 (440)
T ss_pred             hCCCCcCCHHHHHHHHHCCCcEEEecCCCCCCCccEEecCCccccCCCceEEEEEeCCEEEEEEecCCcchhHHHHHHHH
Confidence            99999999999999999999999999999998999996531    1 0        00                      


Q ss_pred             -------c-h-----------hh---h----------hcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCC
Q 020388          223 -------E-D-----------EQ---I----------IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGA  270 (327)
Q Consensus       223 -------~-~-----------~~---~----------~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI  270 (327)
                             . +           ..   .          ..+.+..+.+.+++|+|++||.+|+. +++++++|++|++.||
T Consensus       322 l~~~~I~vd~i~s~~~sis~~i~~~~~~~~~~~~l~~~l~~~~~i~~~~~~a~VsvVG~gm~~-~~v~~~~~~aL~~~~I  400 (440)
T PRK05925        322 LRSLGIVPGLVMAQNLGVYFTIDDDDISEEYPQHLTDALSAFGTVSCEGPLALITMIGAKLAS-WKVVRTFTEKLRGYQT  400 (440)
T ss_pred             HHHcCCcEEEEeccCCEEEEEEechhccHHHHHHHHHHhcCCceEEEECCEEEEEEeCCCccc-ccHHHHHHHHHhhCCC
Confidence                   0 0           00   0          01223467788999999999999987 7899999999999999


Q ss_pred             CEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388          271 NVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (327)
Q Consensus       271 ~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (327)
                      ||.|++|  ++.+|||+|+++|.+++++.||++|+..
T Consensus       401 ni~~i~~--s~~~is~vV~~~d~~~av~~LH~~f~~~  435 (440)
T PRK05925        401 PVFCWCQ--SDMALNLVVNEELAVAVTELLHNDYVKQ  435 (440)
T ss_pred             CEEEEEC--CCceEEEEEehHHHHHHHHHHHHHHhcc
Confidence            9999986  4679999999999999999999999865

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=100.00  E-value=7.6e-52  Score=405.08  Aligned_cols=265  Identities=36%  Similarity=0.558  Sum_probs=245.0

Q ss_pred             CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCc
Q 020388           30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF  109 (327)
Q Consensus        30 ~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gf  109 (327)
                      ..++..+|.++++||++|+.+++.+|+++|+++.++++.+..++++.++++..++...+++.++++++  .+.|||++||
T Consensus        60 ~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~--~~~vpVi~g~  137 (401)
T TIGR00656        60 AITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDIIATEERLLPLLE--EGIIVVVAGF  137 (401)
T ss_pred             CCChHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCceEeeecchHHHHHHHHh--CCCEEEecCc
Confidence            34677899999999999999999999999999999999998787777776655655556578888888  7899999999


Q ss_pred             eecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhH
Q 020388          110 IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI  189 (327)
Q Consensus       110 i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~  189 (327)
                      +|.+.+|.++++||||||++|+.+|.+|+|+++++|||||||||+||+++|+|+++++++|+||.+|+++|++++||+|+
T Consensus       138 ~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~  217 (401)
T TIGR00656       138 QGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTV  217 (401)
T ss_pred             ceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCC
Q 020388          190 IPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVG  269 (327)
Q Consensus       190 ~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~g  269 (327)
                      .+|++++||++|+|+++|+ +||+|.....        ..+.+++|++.+|+++|+++|.+|.+.+++++++|+.|++++
T Consensus       218 ~~a~~~~i~i~i~~~~~~~-~gT~I~~~~~--------~~~~v~~I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~  288 (401)
T TIGR00656       218 EPAMRSGVPIEVRSSFDPE-EGTLITNSME--------NPPLVKGIALRKNVTRVTVHGLGMLGKRGFLARIFGALAERN  288 (401)
T ss_pred             HHHHHCCCeEEEEECCCCC-CCeEEEeCcc--------cCCceEEEEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcC
Confidence            9999999999999999998 8999976421        123699999999999999999999999999999999999999


Q ss_pred             CCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388          270 ANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (327)
Q Consensus       270 I~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~  305 (327)
                      |++.|++|+.|+.+++|+|+++|.+++++.||+.|.
T Consensus       289 I~i~~i~~~~s~~~Is~~V~~~d~~~a~~~L~~~~~  324 (401)
T TIGR00656       289 INVDLISQTPSETSISLTVDETDADEAVRALKDQSG  324 (401)
T ss_pred             CcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHH
Confidence            999999998889999999999999999999999873

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.2e-53  Score=396.02  Aligned_cols=295  Identities=27%  Similarity=0.401  Sum_probs=247.8

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHH
Q 020388           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES   88 (327)
Q Consensus        14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~   88 (327)
                      ..+..+.+.|+++++     +|.+++.+|+++|+||.+|+++|+++|+..|+++..+|...++.++-+.+.+.+.-+ .+
T Consensus       165 ~v~~~~le~leq~Lk~i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~d~~~-a~  243 (559)
T KOG0456|consen  165 AVIAKLLEGLEQLLKGIAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTNDDILE-AT  243 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccchhHHH-HH
Confidence            356677888888887     599999999999999999999999999999999999999998776644444322222 22


Q ss_pred             HHHHHHHhh-c--CCCceEEecCcee-cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeE
Q 020388           89 EKRLEKWFS-Q--SPSNTIIATGFIA-STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (327)
Q Consensus        89 ~~~i~~~l~-~--~~~~vpVv~Gfi~-~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~  164 (327)
                      .-...+++. .  ..+.|||++||+| ....|-.+++||||+|.+|+.+|.+|+++++.+|+|||||+|+||+++|.|++
T Consensus       244 ~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~  323 (559)
T KOG0456|consen  244 YPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARL  323 (559)
T ss_pred             HHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccc
Confidence            222222322 1  3679999999999 46778899999999999999999999999999999999999999999999999


Q ss_pred             EeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCC-----------C------------
Q 020388          165 LRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVD-----------E------------  221 (327)
Q Consensus       165 i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~-----------~------------  221 (327)
                      +|.+|++||.||+|+|+.|+||-++.++++.+||++|+|..+|..+||.|.++.+-           .            
T Consensus       324 vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP~~~GTvI~~d~~m~k~~~TsI~lK~nv~mldI~Str~  403 (559)
T KOG0456|consen  324 VPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNPTAPGTVITPDRDMSKAGLTSIVLKRNVTMLDIASTRM  403 (559)
T ss_pred             cCccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCCCCCceEeccchhhhhccceEEEEeccEEEEEecccch
Confidence            99999999999999999999999999999999999999999999999999876420           0            


Q ss_pred             ---------------------------c-----------c----hhh-------hhcCCeeeEEeecCeeEEEeecCCCC
Q 020388          222 ---------------------------N-----------E----DEQ-------IIDSPVKGFATIDNLALVNVEGTGMA  252 (327)
Q Consensus       222 ---------------------------~-----------~----~~~-------~~~~~v~~i~~~~~la~IsIvG~~~~  252 (327)
                                                 +           .    ..|       .+-..+-.+...++.++||++|. |+
T Consensus       404 l~q~GFLAkvFti~ek~~isVDvvaTSEV~iSltL~~~~~~sreliq~~l~~a~eeL~ki~~vdll~~~sIiSLiGn-vq  482 (559)
T KOG0456|consen  404 LGQHGFLAKVFTIFEKLGISVDVVATSEVSISLTLDPSKLDSRELIQGELDQAVEELEKIAVVDLLKGRSIISLIGN-VQ  482 (559)
T ss_pred             hhhhhHHHHHHHHHHHhCcEEEEEEeeeEEEEEecChhhhhhHHHHHhhHHHHHHHHHHhhhhhhhccchHHhhhhh-hh
Confidence                                       0           0    000       00111223344568899999997 99


Q ss_pred             CcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcC
Q 020388          253 GVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNA  310 (327)
Q Consensus       253 ~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~  310 (327)
                      ...+++.+.|..|+++||||.|||||+|+.+|||+|++++.++++++||+.|++....
T Consensus       483 ~ss~i~~rmF~~l~e~giNvqMISQGAskvNIS~ivne~ea~k~v~~lH~~~~e~~~~  540 (559)
T KOG0456|consen  483 NSSGILERMFCVLAENGINVQMISQGASKVNISCIVNEKEAEKCVQALHKAFFETLDL  540 (559)
T ss_pred             hhhHHHHHHHHHHHhcCcceeeeccccccceEEEEEChHHHHHHHHHHHHHHcCCCCc
Confidence            9999999999999999999999999999999999999999999999999999876443

>PRK08841 aspartate kinase; Validated

Probab=100.00  E-value=8.8e-52  Score=401.93  Aligned_cols=268  Identities=22%  Similarity=0.307  Sum_probs=232.3

Q ss_pred             CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (327)
Q Consensus        31 ~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi  110 (327)
                      .+++.+|.++|+||.+|+.+++.+|+++|++++++++.++++++++.+++..+... ..+.+.++++  .+.|||++||+
T Consensus        61 ~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~i~~~-~~~~i~~ll~--~~~vpVv~Gf~  137 (392)
T PRK08841         61 PTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHI-DTSTITELLE--QDQIVIVAGFQ  137 (392)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCCCceechh-hHHHHHHHHh--CCCEEEEeCCc
Confidence            35678899999999999999999999999999999999987777766654444332 2377888887  78999999999


Q ss_pred             ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHH
Q 020388          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII  190 (327)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~  190 (327)
                      |.+++|.++|+||||||++|+.+|.+|+|+++++|||||||||+||+++|+|+++++|+|+||.+|+++|++++||+|++
T Consensus       138 g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~  217 (392)
T PRK08841        138 GRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQ  217 (392)
T ss_pred             ccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEeecCCCCCCceEEeCCCCC---------Cc---------ch----------------------------
Q 020388          191 PVMRYDIPIVIRNIFNLSVPGIMICRPPVD---------EN---------ED----------------------------  224 (327)
Q Consensus       191 ~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~---------~~---------~~----------------------------  224 (327)
                      +|+++|||++|+|++++ .+||+|..+...         .+         .+                            
T Consensus       218 ~a~~~~Ipi~i~n~~~~-~~GT~I~~~~~~~~i~~i~~~~~~~~i~v~~~~~~~i~~~l~~~~i~v~~i~~~~~~~~~~v  296 (392)
T PRK08841        218 HAWKHSVPLRVLSSFEV-GEGTLIKGEAGTQAVCGIALQRDLALIEVESESLPSLTKQCQMLGIEVWNVIEEADRAQIVI  296 (392)
T ss_pred             HHHHCCCeEEEEecCCC-CCCeEEEeccCCCcEEEEEEeCCeEEEEeccchHHHHHHHHHHcCCCEEEEEecCCcEEEEE
Confidence            99999999999999986 479999643210         00         00                            


Q ss_pred             h----h-hhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHH
Q 020388          225 E----Q-IIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEA  299 (327)
Q Consensus       225 ~----~-~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~  299 (327)
                      .    . ........+.+.+++++|+++|.++   ||+++++|++|+++|||+.|+++  |+.+|||+|+++|.++++++
T Consensus       297 ~~~~~~~~~~~~~~~i~~~~~~a~vsvVG~~~---~gv~~~~~~aL~~~~I~i~~i~~--s~~~is~vv~~~~~~~av~~  371 (392)
T PRK08841        297 KQDACAKLKLVFDDKIRNSESVSLLTLVGLEA---NGMVEHACNLLAQNGIDVRQCST--EPQSSMLVLDPANVDRAANI  371 (392)
T ss_pred             CHHHHHHHHHhCcccEEEeCCEEEEEEECCCC---hHHHHHHHHHHHhCCCCEEEEEC--CCcEEEEEEeHHHHHHHHHH
Confidence            0    0 0011123477788999999999874   99999999999999999999984  68999999999999999999


Q ss_pred             HHHHHHhh
Q 020388          300 LESKFREA  307 (327)
Q Consensus       300 Lh~~f~~~  307 (327)
                      ||++|+..
T Consensus       372 lH~~f~~~  379 (392)
T PRK08841        372 LHKTYVTS  379 (392)
T ss_pred             HHHHHcCC
Confidence            99999865

>TIGR00657 asp_kinases aspartate kinase

Probab=100.00  E-value=1.5e-50  Score=400.43  Aligned_cols=262  Identities=36%  Similarity=0.555  Sum_probs=239.3

Q ss_pred             ChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCcee
Q 020388           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (327)
Q Consensus        32 ~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~  111 (327)
                      +++.+|.++|+||+||+.+++.+|+++|++++++++.++.+++++.+++..+......+.+..+++  .+.|||++||+|
T Consensus       101 ~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~--~~~vpVv~G~~g  178 (441)
T TIGR00657       101 KPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLE--EGIIPVVAGFQG  178 (441)
T ss_pred             CcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHh--cCCEEEEeCcEe
Confidence            367889999999999999999999999999999999998888877776544334455688888887  789999999999


Q ss_pred             cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHH
Q 020388          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (327)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~  191 (327)
                      .+++|.++++||||||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+|+++|++++||+|+.+
T Consensus       179 ~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~  258 (441)
T TIGR00657       179 ATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEP  258 (441)
T ss_pred             eCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCC
Q 020388          192 VMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN  271 (327)
Q Consensus       192 a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~  271 (327)
                      |++++||++|+|+++|+.+||+|.+.....      ....+++++..+++++|++.|.+|.+ +++++++|+.|+++||+
T Consensus       259 ~~~~~i~i~i~~~~~~~~~GT~I~~~~~~~------~~~~i~~It~~~~v~~Isv~g~~~~~-~g~la~if~~L~~~~I~  331 (441)
T TIGR00657       259 AMRAKIPIVVKSTFNPEAPGTLIVASTKEM------EEPIVKGLSLDRNQARVTVSGLGMKG-PGFLARVFGALAEAGIN  331 (441)
T ss_pred             HHHcCCeEEEecCCCCCCCceEEEeCCCcc------ccCccceEEEeCCEEEEEEECCCCCC-ccHHHHHHHHHHHcCCe
Confidence            999999999999999988899997643211      12368999999999999999999988 99999999999999999


Q ss_pred             EEEEEecCCccEEEEEeccccHHHHHHHHHH
Q 020388          272 VIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (327)
Q Consensus       272 V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~  302 (327)
                      |++++|++|+.+|+|++++++.+++.+.|..
T Consensus       332 I~~i~q~~se~sIs~~I~~~~~~~a~~~L~~  362 (441)
T TIGR00657       332 VDLITQSSSETSISFTVDKEDADQAKTLLKS  362 (441)
T ss_pred             EEEEEecCCCceEEEEEEHHHHHHHHHHHHH
Confidence            9999999999999999999999999888744

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=100.00  E-value=5.8e-48  Score=408.27  Aligned_cols=298  Identities=31%  Similarity=0.455  Sum_probs=248.0

Q ss_pred             HHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCC-------CCC
Q 020388           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVD   82 (327)
Q Consensus        15 ~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~-------~~~   82 (327)
                      .+...++.|++++.     ++.+++.+|.++|+||+||+.+|+.+|+++|+++.+++++++++++++.++       +..
T Consensus        93 ~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~~~~~~~~~  172 (861)
T PRK08961         93 VLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVS  172 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecCccccccccccccce
Confidence            56677777887774     577889999999999999999999999999999999999999776652111       122


Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCC
Q 020388           83 PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (327)
Q Consensus        83 ~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a  162 (327)
                      ++.....+.++.++. ..+.|||++||+|.+.+|.++||||||||++|+.+|.+|+|+++++|||||||||+||+.+|+|
T Consensus       173 ~~~~~~~~~~~~~~~-~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a  251 (861)
T PRK08961        173 CQWQSDPALRERFAA-QPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDA  251 (861)
T ss_pred             ecHhhHHHHHHHHhc-cCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCc
Confidence            222212234444443 2336999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCee
Q 020388          163 VILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLA  242 (327)
Q Consensus       163 ~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la  242 (327)
                      +++++++|+||.+|++.|++++||+|+++|+++|||++|+|+++|+.+||+|..+..        ....+++|+..+|++
T Consensus       252 ~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~~~~gT~I~~~~~--------~~~~v~~It~~~~v~  323 (861)
T PRK08961        252 RLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPDLSGTSIDGDAE--------PVPGVKAISRKNGIV  323 (861)
T ss_pred             eEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCEEEEeCCCCCCCccEEeCCCC--------CCCcceeEEEECCEE
Confidence            999999999999999999999999999999999999999999999989999976431        124699999999999


Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHH---HHHHHHHHHHHhhhcCCCC-ce-eE
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK---AVAEALESKFREALNAGRL-SQ-FS  317 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~---~av~~Lh~~f~~~~~~~~~-~~-~~  317 (327)
                      +|++.|.+|.+.+++.+++|+.|+++||+|+||+  +|+.++||++++.+..   ++++.|.+.|.. +..=.+ +. -.
T Consensus       324 lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~--sse~sis~~i~~~~~~~~~~~~~~l~~~l~~-~~~i~~~~~va~  400 (861)
T PRK08961        324 LVSMETIGMWQQVGFLADVFTLFKKHGLSVDLIS--SSETNVTVSLDPSENLVNTDVLAALSADLSQ-ICRVKIIVPCAA  400 (861)
T ss_pred             EEEEecCCccccccHHHHHHHHHHHcCCeEEEEE--cCCCEEEEEEccccccchHHHHHHHHHHHhh-cCcEEEeCCeEE
Confidence            9999999999999999999999999999999998  4689999999998753   566666666532 111111 11 45


Q ss_pred             EEEeecc
Q 020388          318 ASILSQD  324 (327)
Q Consensus       318 ~~~~~~~  324 (327)
                      ++|+|..
T Consensus       401 ISvVG~g  407 (861)
T PRK08961        401 VSLVGRG  407 (861)
T ss_pred             EEEeCCC
Confidence            7777754

>PRK06635 aspartate kinase; Reviewed

Probab=100.00  E-value=4.1e-47  Score=372.00  Aligned_cols=260  Identities=32%  Similarity=0.493  Sum_probs=234.2

Q ss_pred             ChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCcee
Q 020388           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (327)
Q Consensus        32 ~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~  111 (327)
                      ++..+|.++++||.+|+++++.+|+++|++++++++.+++++++.++++.++.. ...+.++.+++  .+.|||++||+|
T Consensus        62 ~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~--~~~ipVi~g~~~  138 (404)
T PRK06635         62 DPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITD-IDPSRIREALD--EGDVVVVAGFQG  138 (404)
T ss_pred             CHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCceEeee-cCHHHHHHHHh--CCCEEEecCccE
Confidence            567889999999999999999999999999999999999777766665433221 12378888888  789999999999


Q ss_pred             cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHH
Q 020388          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (327)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~  191 (327)
                      .+++|.++++||||||++|+++|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+|++.|++++||+|+.+
T Consensus       139 ~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~  218 (404)
T PRK06635        139 VDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEY  218 (404)
T ss_pred             eCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCC
Q 020388          192 VMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN  271 (327)
Q Consensus       192 a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~  271 (327)
                      ++++|+|++|+|++++ ..||+|.......     .....+++|+..+++++|+++|  |.+.||+++++|++|+++||+
T Consensus       219 ~~~~~i~~~i~~~~~~-~~gT~i~~~~~~~-----~~~~~i~~I~~~~~v~~Isv~g--~~~~~g~l~~i~~~L~~~~I~  290 (404)
T PRK06635        219 AKKYNVPLRVRSSFSD-NPGTLITGEEEEI-----MEQPVVTGIAFDKDEAKVTVVG--VPDKPGIAAQIFGALAEANIN  290 (404)
T ss_pred             HHHcCceEEEEcCCCC-CCCCEEeeCCccc-----cccCceEEEEecCCeEEEEECC--CCCCccHHHHHHHHHHHcCCe
Confidence            9999999999999987 5799997653200     0234689999999999999998  888999999999999999999


Q ss_pred             EEEEEecCCc---cEEEEEeccccHHHHHHHHHH
Q 020388          272 VIMISQASSE---HSVCFAVPEKEVKAVAEALES  302 (327)
Q Consensus       272 V~~Isq~~s~---~sIs~~V~~~d~~~av~~Lh~  302 (327)
                      |.+++|+.++   .+++|++++++.+++++.||+
T Consensus       291 i~~is~s~~~~~~~~is~~v~~~~~~~a~~~L~~  324 (404)
T PRK06635        291 VDMIVQNVSEDGKTDITFTVPRDDLEKALELLEE  324 (404)
T ss_pred             EEEEEecCCCCCceeEEEEEcHHHHHHHHHHHHH
Confidence            9999998766   899999999999999999999

>PRK07431 aspartate kinase; Provisional

Probab=100.00  E-value=1.3e-46  Score=384.13  Aligned_cols=282  Identities=27%  Similarity=0.428  Sum_probs=242.7

Q ss_pred             CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecC
Q 020388           29 GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG  108 (327)
Q Consensus        29 ~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~G  108 (327)
                      .+.+...+|.++++||.+|+.+++.+|+++|++++++++.++++++++.++..++... ..+.++++++  .+.|||++|
T Consensus        59 ~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~~i~~~-~~~~l~~~l~--~g~vpVv~g  135 (587)
T PRK07431         59 SNPPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILEI-KTDRIQRHLD--AGKVVVVAG  135 (587)
T ss_pred             cCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCCceeeeec-cHHHHHHHHh--CCCeEEecC
Confidence            3445678899999999999999999999999999999999998877666554332221 1267888887  789999999


Q ss_pred             ceecCC--CCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccH
Q 020388          109 FIASTP--DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP  186 (327)
Q Consensus       109 fi~~~~--~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p  186 (327)
                      |+|.+.  +|+++++||||||++|+++|.+|+|+++++||||||||++||+++|+|+++++++|+|+.+|+++|+++|||
T Consensus       136 ~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~  215 (587)
T PRK07431        136 FQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHP  215 (587)
T ss_pred             CcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhH
Confidence            998764  488999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCC-------------------------------C--------------
Q 020388          187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVD-------------------------------E--------------  221 (327)
Q Consensus       187 ~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~-------------------------------~--------------  221 (327)
                      +|+.+|+++|||++|+|++. +.+||+|.+....                               .              
T Consensus       216 ~a~~~~~~~~i~i~i~~~~~-~~~GT~i~~~~~~~~~~~~~~~~~~i~gi~~~~~~a~itl~~~~~~~g~~a~if~~l~~  294 (587)
T PRK07431        216 RAVEIARNYGVPLVVRSSWS-DAPGTLVTSPPPRPRSLGGLELGKPVDGVELDEDQAKVALLRVPDRPGIAAQLFEELAA  294 (587)
T ss_pred             HHHHHHHHcCCcEEEecCCC-CCCCeEEEeCCcccccccchhcccccceEEEecCceEEEEecCCCcccHHHHHHHHHHH
Confidence            99999999999999999984 4579999633100                               0              


Q ss_pred             ---c-c-hhh---------------------------hhcCCe--eeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHh
Q 020388          222 ---N-E-DEQ---------------------------IIDSPV--KGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD  267 (327)
Q Consensus       222 ---~-~-~~~---------------------------~~~~~v--~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~  267 (327)
                         + . ..|                           .....+  ..+++.+++++|+++|.+|++.+++++++|++|++
T Consensus       295 ~~I~v~~i~qs~~~~~~~~isf~i~~~d~~~~~~~l~~l~~~~~~~~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~  374 (587)
T PRK07431        295 QGVNVDLIIQSIHEGNSNDIAFTVAENELKKAEAVAEAIAPALGGAEVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAE  374 (587)
T ss_pred             cCCcEEEEEeccCCCCCccEEEEEeHHHHHHHHHHHHHHHHHcCCCcEEEeCCeEEEEEECCCcccCccHHHHHHHHHHH
Confidence               0 0 000                           000011  34788899999999999999999999999999999


Q ss_pred             CCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCCCCcee
Q 020388          268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQF  316 (327)
Q Consensus       268 ~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~~  316 (327)
                      .||+|.||+  +|+.+|||+|+++|.+++++.||++|+.++....+.|+
T Consensus       375 ~~I~i~~i~--sSe~~Is~vv~~~d~~~av~~Lh~~f~~~~~~~~~~~~  421 (587)
T PRK07431        375 AGINIRMIS--TSEVKVSCVIDAEDGDKALRAVCEAFELEDSQIEINPT  421 (587)
T ss_pred             CCCcEEEEE--cCCCEEEEEEcHHHHHHHHHHHHHHhccCCcccccCcc
Confidence            999999998  78999999999999999999999999999999999997

>PRK08210 aspartate kinase I; Reviewed

Probab=100.00  E-value=3.6e-46  Score=365.26  Aligned_cols=263  Identities=27%  Similarity=0.450  Sum_probs=229.1

Q ss_pred             CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (327)
Q Consensus        31 ~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi  110 (327)
                      .+++.+|.++++||.+|+.+++++|+++|+++.++++.++.+++++.++...+... ..+.++.+++  .+.|||++||+
T Consensus        66 ~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~~-~~~~l~~~l~--~~~vpVi~G~~  142 (403)
T PRK08210         66 ISKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEV-NPDRILEALE--EGDVVVVAGFQ  142 (403)
T ss_pred             CChHHHHHHHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeehh-hHHHHHHHHh--cCCEEEeeCee
Confidence            46778899999999999999999999999999999999987777666654333221 2377888887  78999999999


Q ss_pred             ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHH
Q 020388          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII  190 (327)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~  190 (327)
                      |.+++|+++++||||||++|+.+|.+|+|+++++||||||||++||+.+|+++++++|+|+|+.+|+++|++++||+|++
T Consensus       143 ~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~  222 (403)
T PRK08210        143 GVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVE  222 (403)
T ss_pred             ecCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCC
Q 020388          191 PVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGA  270 (327)
Q Consensus       191 ~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI  270 (327)
                      +|++++||++|+|++++ .+||+|.+........ +.....+++|+..+|+++|++.+..+  .||+++++|+.|+++||
T Consensus       223 ~~~~~~i~i~i~~~~~~-~~gT~I~~~~~~~~~~-~~~~~~v~~It~~~~i~~isv~~~~~--~~g~la~If~~L~~~~I  298 (403)
T PRK08210        223 IAMQANIPLRIRSTYSD-SPGTLITSLGDAKGGI-DVEERLITGIAHVSNVTQIKVKAKEN--AYDLQQEVFKALAEAGI  298 (403)
T ss_pred             HHHHCCCeEEEEecCCC-cCCcEEEecCcccccc-ccccCceEEEEEcCCcEEEEEecCCC--cchHHHHHHHHHHHcCC
Confidence            99999999999999985 3699997653211000 00234699999999999999987554  49999999999999999


Q ss_pred             CEEEEEecCCccEEEEEeccccHHHHHHHHHH
Q 020388          271 NVIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (327)
Q Consensus       271 ~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~  302 (327)
                      +|+|++|+  ..+++|+++.++.+++...|++
T Consensus       299 ~i~~i~~~--~~~is~~v~~~~~~~a~~~l~~  328 (403)
T PRK08210        299 SVDFINIF--PTEVVFTVSDEDSEKAKEILEN  328 (403)
T ss_pred             eEEEEEec--CceEEEEEcHHHHHHHHHHHHH
Confidence            99999976  4579999999999999888777

>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species

Probab=100.00  E-value=1.5e-46  Score=350.77  Aligned_cols=196  Identities=28%  Similarity=0.467  Sum_probs=178.3

Q ss_pred             HHHHHHHHHhhhcCCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHH
Q 020388           16 IRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKW   95 (327)
Q Consensus        16 i~~~~~~l~~~~~~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   95 (327)
                      +...++.+.+++. +++++.+|.++|+||+||+.+|+.+|++.|+++.+++++++++.+++.++++.+... +.+.+.+.
T Consensus        93 i~~~~~~l~~~~~-~~~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~-~~~~~~~~  170 (288)
T cd04245          93 IAEILENLANLDY-ANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPE-SYQKIKKL  170 (288)
T ss_pred             HHHHHHHHHHhhc-cCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchh-hHHHHHHH
Confidence            4444555555443 467899999999999999999999999999999999999998878888877766653 56778888


Q ss_pred             hhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHH
Q 020388           96 FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE  175 (327)
Q Consensus        96 l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~  175 (327)
                      ++  .+.|||++||+|.+.+|++++||||||||+|+++|.+|+|+++.+|||||||||+||+++|+|+++++|||+||.+
T Consensus       171 ~~--~~~v~Vv~Gf~g~~~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~e  248 (288)
T cd04245         171 RD--SDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRE  248 (288)
T ss_pred             Hh--CCCEEEEeCccccCCCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHH
Confidence            87  6789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe
Q 020388          176 MSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (327)
Q Consensus       176 l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~  215 (327)
                      |+++|+++|||+|+.||++++||++|+|+++|+.+||+|.
T Consensus       249 la~~GakVlhp~ai~~a~~~~Ipi~v~n~~~p~~~GT~I~  288 (288)
T cd04245         249 LSYAGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLIV  288 (288)
T ss_pred             HHHCCCcccCHHHHHHHHHCCCcEEEeeCCCCCCCCceeC
Confidence            9999999999999999999999999999999999999984

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.

>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=100.00  E-value=7.9e-46  Score=346.45  Aligned_cols=200  Identities=32%  Similarity=0.576  Sum_probs=184.5

Q ss_pred             HHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHH
Q 020388           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE   89 (327)
Q Consensus        15 ~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~   89 (327)
                      .|...++.|++++.     ++++++.+|.++|+||+||+.+++.+|+++|+++.++++++++ .+++.++++.+++..+.
T Consensus        87 ~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i-~t~~~~~~a~~~~~~~~  165 (292)
T cd04258          87 KLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVL-RTDSRFGRAAPDLNALA  165 (292)
T ss_pred             HHHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeE-EecCCCccccccHHHHH
Confidence            46677888888875     4678899999999999999999999999999999999999994 56667888889888887


Q ss_pred             HHHHHHhhc-CCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeec
Q 020388           90 KRLEKWFSQ-SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (327)
Q Consensus        90 ~~i~~~l~~-~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~i  168 (327)
                      +.++.++.. ..+.|||++||+|.+.+|++|||||||||++|+++|.+|+|+++++|||||||||+||+++|+|++++++
T Consensus       166 ~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~i  245 (292)
T cd04258         166 ELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEI  245 (292)
T ss_pred             HHHHHHHHHhhcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEecee
Confidence            777776654 2568999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe
Q 020388          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (327)
Q Consensus       169 s~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~  215 (327)
                      +|+||.+|+++|++++||+|+.++++++||++|+|+++|+.+||+|.
T Consensus       246 sy~Ea~ela~~Gakvlhp~a~~~~~~~~ipi~i~~~~~p~~~GT~I~  292 (292)
T cd04258         246 SFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPEAGGTLIT  292 (292)
T ss_pred             CHHHHHHHHHCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCCceeC
Confidence            99999999999999999999999999999999999999999999984

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.

>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH)

Probab=100.00  E-value=7.7e-46  Score=347.48  Aligned_cols=200  Identities=49%  Similarity=0.798  Sum_probs=184.4

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHH
Q 020388           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES   88 (327)
Q Consensus        14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~   88 (327)
                      +.|+..+..|++++.     ++++++.+|.++|+||+||+++|+.+|+++|+++.+++++++ +++++.++++.+++..+
T Consensus        90 ~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a~~~~~~~  168 (294)
T cd04257          90 SALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDAREL-IVTDGGYLNAVVDIELS  168 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHe-eEecCCCCceEechHhh
Confidence            356667777777776     578899999999999999999999999999999999999997 45566777778887777


Q ss_pred             HHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeec
Q 020388           89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (327)
Q Consensus        89 ~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~i  168 (327)
                      .+.+++++... +.|||++||+|.+.+|.++++||||||++|+++|.+|+|+++++|||||||||+||+.+|+|++++++
T Consensus       169 ~~~l~~~~~~~-~~v~Vv~Gfig~~~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~i  247 (294)
T cd04257         169 KERIKAWFSSN-GKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSL  247 (294)
T ss_pred             HHHHHHHHhcC-CCEEEecCcccCCCCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEecee
Confidence            88999888732 78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe
Q 020388          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (327)
Q Consensus       169 s~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~  215 (327)
                      +|+||.+++++|++++||+|+.+|+++|||++|+|+++|+.+||+|+
T Consensus       248 s~~ea~~l~~~Gakv~h~~~~~~a~~~~Ipi~i~~~~~p~~~GT~I~  294 (294)
T cd04257         248 SYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPEAPGTLIS  294 (294)
T ss_pred             CHHHHHHHHhCCCcccCHHHHHHHHHCCCCEEEeeCCCCCCCCCEeC
Confidence            99999999999999999999999999999999999999999999984

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act

>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

Probab=100.00  E-value=1.7e-45  Score=344.96  Aligned_cols=200  Identities=43%  Similarity=0.740  Sum_probs=184.1

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHH
Q 020388           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES   88 (327)
Q Consensus        14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~   88 (327)
                      +.+...++.|++++.     ++++++.+|.++|+||+||+++++.+|+++|+++.++++++++. +++.++++.+++..+
T Consensus        89 ~~i~~~~~~l~~~l~~~~~~~~~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~-t~~~~~~~~~~~~~s  167 (293)
T cd04243          89 AALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELLL-TDDGFLNAVVDLKLS  167 (293)
T ss_pred             HHHHHHHHHHHHHHHhhhhhccCCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeEE-ecCCCCcchhhhHHH
Confidence            456777888888775     46789999999999999999999999999999999999999854 555677777888777


Q ss_pred             HHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeec
Q 020388           89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (327)
Q Consensus        89 ~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~i  168 (327)
                      .+.++.++... +.|||++||+|.+.+|+++++||||||++|+++|.+|+|+++++|||||||||+||+++|+|++++++
T Consensus       168 ~~~~~~~~~~~-~~v~Vv~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~l  246 (293)
T cd04243         168 KERLAQLLAEH-GKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKEL  246 (293)
T ss_pred             HHHHHHHHhcC-CCEEEecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEecee
Confidence            88899888721 78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe
Q 020388          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (327)
Q Consensus       169 s~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~  215 (327)
                      +|+|+.+|+++|++++||+|+.+|+++|||++|+|+++|+.+||+|+
T Consensus       247 s~~ea~~l~~~Gakvl~p~ai~~a~~~~i~i~i~~~~~p~~~GT~I~  293 (293)
T cd04243         247 SYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPEAPGTLIS  293 (293)
T ss_pred             CHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEeC
Confidence            99999999999999999999999999999999999999999999984

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-

>PRK08373 aspartate kinase; Validated

Probab=100.00  E-value=1.1e-44  Score=344.59  Aligned_cols=241  Identities=27%  Similarity=0.398  Sum_probs=208.1

Q ss_pred             CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHH---HHHHHHhhcCCCceEEec
Q 020388           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE---KRLEKWFSQSPSNTIIAT  107 (327)
Q Consensus        31 ~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~l~~~~~~vpVv~  107 (327)
                      ++++.+|.++|+||++|+.+++.+|+++|+++.+++++++ +.+++.++++.++...+.   +.+..+++  .+.|||++
T Consensus        97 ~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~-i~t~~~~~~a~i~~~~s~~~~~~l~~~l~--~g~VpVv~  173 (341)
T PRK08373         97 PSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEI-LEAKGSFGNAFIDIKKSKRNVKILYELLE--RGRVPVVP  173 (341)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHh-eeecCCccceeechhhhhhhHHHHHHHHh--CCcEEEEe
Confidence            4578899999999999999999999999999999999998 456667777766654433   45666666  78999999


Q ss_pred             CceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHh
Q 020388          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (327)
Q Consensus       108 Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~  187 (327)
                      ||++ +.+|.++++||||||++|+.+|++|+|+++++||||||||++||+.+|+|+++++++|+||.+++++|++++||+
T Consensus       174 Gf~g-~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~  252 (341)
T PRK08373        174 GFIG-NLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWK  252 (341)
T ss_pred             CCcc-CCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHH
Confidence            9998 889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHh
Q 020388          188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD  267 (327)
Q Consensus       188 a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~  267 (327)
                      |+++|++ +||++|+|+++|. +||+|......        ...+.++ +..|.|.|+++|.  .+.|++          
T Consensus       253 ai~~a~~-~Ipi~v~~t~~~~-~GT~I~~~~~~--------~~~~~~~-~~~~~~~i~~~~~--~~~~~~----------  309 (341)
T PRK08373        253 AIEPVKG-KIPIIFGRTRDWR-MGTLVSNESSG--------MPILVHK-VGEEHAEILVVGV--EEEIGY----------  309 (341)
T ss_pred             HHHHHHc-CCcEEEecCCCCC-CCcEEecCCCC--------CceEEEE-ecCCEEEEEEecc--CCCCCC----------
Confidence            9999999 9999999999984 79999764321        2457777 8889999999983  333332          


Q ss_pred             CCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388          268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (327)
Q Consensus       268 ~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~  305 (327)
                         .  ...  -....+++.|++++..++++.+|+..+
T Consensus       310 ---~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (341)
T PRK08373        310 ---P--VYE--EGEFWFKIKVPKEELIEALREIHRRVF  340 (341)
T ss_pred             ---C--cee--cCCceEEEecCHHHHHHHHHHHHHHhh
Confidence               2  122  236889999999999999999999764

>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains

Probab=100.00  E-value=3.9e-45  Score=343.34  Aligned_cols=201  Identities=29%  Similarity=0.512  Sum_probs=172.9

Q ss_pred             HHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCC-chHH
Q 020388           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD-FSES   88 (327)
Q Consensus        15 ~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~-~~~~   88 (327)
                      .++..++.|++++.     ++++++.+|.++|+||+||+++|+.+|+++|+++.++++++++. ++......... +...
T Consensus        99 ~i~~~~~~l~~~l~~~~~l~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~-~~~~~~~~~~~~~~~~  177 (306)
T cd04247          99 EINKECELLRKYLEAAKILSEISPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVD-LDFSIEALDQTFYDEL  177 (306)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcchHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHhee-cCCCccccccchhHHH
Confidence            55667777777775     57789999999999999999999999999999999999999854 43321011111 2233


Q ss_pred             HHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeec
Q 020388           89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (327)
Q Consensus        89 ~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~i  168 (327)
                      .+.+...+....+.|||++||+|.+.+|.+|||||||||++|+++|..|+|+++++|||||||||+||+++|+|+++++|
T Consensus       178 ~~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~i  257 (306)
T cd04247         178 AQVLGEKITACENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSI  257 (306)
T ss_pred             HHHHHHHhhccCCceEEeeccEecCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEeccc
Confidence            34443444323468999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeC
Q 020388          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICR  216 (327)
Q Consensus       169 s~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~  216 (327)
                      +|+||.+|+++|++|+||+|+.||+++|||++|+|+++|+.+||+|.+
T Consensus       258 s~~ea~el~~~GakVlHp~ti~pa~~~~Ipi~i~nt~~P~~~GT~I~~  305 (306)
T cd04247         258 TPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENPRGEGTVIYP  305 (306)
T ss_pred             CHHHHHHHHhCcCcccCHHHHHHHHHcCCcEEEecCCCCCCCCcEEcC
Confidence            999999999999999999999999999999999999999999999965

Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.

>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

Probab=100.00  E-value=4.7e-45  Score=343.13  Aligned_cols=200  Identities=41%  Similarity=0.636  Sum_probs=180.1

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCC---c
Q 020388           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---F   85 (327)
Q Consensus        14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~---~   85 (327)
                      +.|+.+++.|++++.     ++.+++.+|.++|+||+||+++++.+|+++|+++.+++++++++++++.+++..++   .
T Consensus        91 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~  170 (298)
T cd04244          91 SIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATY  170 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHH
Confidence            467777888888875     46788999999999999999999999999999999999999987777766654432   3


Q ss_pred             hHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEE
Q 020388           86 SESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (327)
Q Consensus        86 ~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i  165 (327)
                      ......+..+++  .+.|||++||+|.+.+|+++++||||||++|+.+|.+|+|+++++||||||||++||+.+|+++++
T Consensus       171 ~~i~~~l~~ll~--~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i  248 (298)
T cd04244         171 ERVRKRLLPMLE--DGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTI  248 (298)
T ss_pred             HHHHHHHHHHhh--cCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEc
Confidence            333344555555  689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe
Q 020388          166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (327)
Q Consensus       166 ~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~  215 (327)
                      ++++|+||.+|+++|++++||+|+.+|+++|||++|+|+++|+.+||+|.
T Consensus       249 ~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~p~~~GT~I~  298 (298)
T cd04244         249 PRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTLIT  298 (298)
T ss_pred             CccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEeeCCCCCCCCCEeC
Confidence            99999999999999999999999999999999999999999999999984

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.

>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria

Probab=100.00  E-value=2.4e-44  Score=337.36  Aligned_cols=199  Identities=34%  Similarity=0.543  Sum_probs=178.9

Q ss_pred             HHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCC-------CC
Q 020388           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-------VD   82 (327)
Q Consensus        15 ~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~-------~~   82 (327)
                      .++..++.|++++.     ++++++.+|.++|+||+||+.+++.+|+++|+++.++++++++++++ .+++       +.
T Consensus        85 ~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~-~~~~~~~~~~~a~  163 (295)
T cd04259          85 LLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATP-TLGGETMNYLSAR  163 (295)
T ss_pred             HHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeecc-cccccccccccce
Confidence            56677777777764     46889999999999999999999999999999999999999966553 4432       34


Q ss_pred             CCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCC
Q 020388           83 PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (327)
Q Consensus        83 ~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a  162 (327)
                      ++...+.+++.+.+.. .+.|||++||+|.+.+|.++||||||||++|+.+|.+|+|+++++||||||||++||+.+|+|
T Consensus       164 v~~~~~~~~l~~~l~~-~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a  242 (295)
T cd04259         164 CESEYADALLQKRLAD-GAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHA  242 (295)
T ss_pred             ehhhhhHHHHHHHHhc-CCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCC
Confidence            4445566788887762 257999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe
Q 020388          163 VILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (327)
Q Consensus       163 ~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~  215 (327)
                      +++++++|+||.+|+++|++++||+|+++|+++|||++|+|+++|+.+||+|+
T Consensus       243 ~~i~~ls~~ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p~~~GT~I~  295 (295)
T cd04259         243 RLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGTLIT  295 (295)
T ss_pred             eEeceeCHHHHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCCCCCCcEeC
Confidence            99999999999999999999999999999999999999999999999999984

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.

>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria

Probab=100.00  E-value=3.4e-42  Score=320.06  Aligned_cols=189  Identities=20%  Similarity=0.300  Sum_probs=159.5

Q ss_pred             HHHHHHHHhhhc------CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHH
Q 020388           17 RSTYNFLSNVDS------GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK   90 (327)
Q Consensus        17 ~~~~~~l~~~~~------~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~   90 (327)
                      +.++.++..++.      ++++++.+|.++|+||+||+.+++.+|+++|+++++++...+....  ..   . +...+.+
T Consensus       108 ~~~l~~~~~~~~~g~~~l~e~~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~--~~---t-~~~~i~~  181 (304)
T cd04248         108 RACLHDLARLCSSGYFSLAEHLLAARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRDSG--DM---T-LDERISE  181 (304)
T ss_pred             HHHHHHHHHHHHhhHHHHhhCCHHHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccccC--CC---C-cHHHHHH
Confidence            344555555552      4789999999999999999999999999999999999987663211  11   1 1222223


Q ss_pred             HHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCC--CCCeEEeec
Q 020388           91 RLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV--SEAVILRTL  168 (327)
Q Consensus        91 ~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~--~~a~~i~~i  168 (327)
                      .+..+ . ..+.|||++|| +.+.+|.++|||||||||+|+.+|++|+|++++|||||+ |||+||+++  ++|++++++
T Consensus       182 ~~~~~-~-~~~~v~IvtGF-~~~~~G~itTLGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~l  257 (304)
T cd04248         182 AFRDI-D-PRDELPIVTGY-AKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRT  257 (304)
T ss_pred             HHHhh-c-cCCcEEEeCCc-cCCCCCCEEEcCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCcc
Confidence            33332 1 25689999999 567799999999999999999999999999999999996 999999999  589999999


Q ss_pred             CHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe
Q 020388          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (327)
Q Consensus       169 s~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~  215 (327)
                      ||+||.||+++|++++||+|++||+++|||++|+|+|+|+.+||+|+
T Consensus       258 sY~EA~ELA~~GakvLHP~ai~pa~~~~IPi~Vkntf~P~~~GTlIt  304 (304)
T cd04248         258 NYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVKNTFEPDHPGTLIT  304 (304)
T ss_pred             CHHHHHHHHHcChhhcCHHHHHHHHHcCCeEEEecCCCCCCCCceeC
Confidence            99999999999999999999999999999999999999999999984

Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.

>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative

Probab=100.00  E-value=2.9e-41  Score=319.62  Aligned_cols=231  Identities=25%  Similarity=0.392  Sum_probs=193.8

Q ss_pred             CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHH---HHHhhcCCCceEEec
Q 020388           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRL---EKWFSQSPSNTIIAT  107 (327)
Q Consensus        31 ~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~l~~~~~~vpVv~  107 (327)
                      ++++.+|+++|+||+||+++++.     |+++.++++++++ .+++.++++.+++..+...+   ..++.  .+.|||++
T Consensus        92 ~~~~~~d~I~s~GE~lSa~Lla~-----gi~a~~vd~~~~i-~t~~~~~~a~~~~~~~~~~~~~l~~~l~--~g~IpVv~  163 (327)
T TIGR02078        92 PKEALRDYILSLGERLSAVIFAE-----GINGKVVDPWDIF-FAKGDFGNAFIDIKKSKRNAKILYEVLE--SGKIPVIP  163 (327)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHc-----cCCcEEEcHHHHh-ccCCcCCceeechhhhHhhHHHHHHHHh--CCcEEEEe
Confidence            35678999999999999999886     8999999999984 46667777778865555444   44454  78999999


Q ss_pred             CceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHh
Q 020388          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (327)
Q Consensus       108 Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~  187 (327)
                      ||++ +.+|.++++||||||++|+++|.+|+|+++++||||||||++||+.+|+|+++++++|+||.+++++|++++||+
T Consensus       164 Gf~~-~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~  242 (327)
T TIGR02078       164 GFYG-NLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWK  242 (327)
T ss_pred             CCcc-CCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHH
Confidence            9998 889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecC-eeEEEeecCCCCCcccHHHHHHHHHH
Q 020388          188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDN-LALVNVEGTGMAGVPGTANAIFGAVK  266 (327)
Q Consensus       188 a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~-la~IsIvG~~~~~~~~v~a~if~~L~  266 (327)
                      |+++|+++|||++|+|+++|+ +||+|+....           ....+++++. ++.|++. +.+               
T Consensus       243 a~~~a~~~~Ipi~I~~t~~~~-~GT~I~~~~~-----------~~~~i~~~~~~i~~v~~~-~~~---------------  294 (327)
T TIGR02078       243 AADLAKEYKIPVLFGRTRDWR-MGTLISNRSS-----------GMPLMVYKDGELLVVNVR-REI---------------  294 (327)
T ss_pred             HHHHHHHCCCeEEEEeCCCcC-CCcEEecCCC-----------CCcEEEEccCcEEEEEEe-ecc---------------
Confidence            999999999999999999986 7999976432           1223666666 7766661 111               


Q ss_pred             hCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHH
Q 020388          267 DVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF  304 (327)
Q Consensus       267 ~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f  304 (327)
                          +-..+.  ..+..+++.|++++..++++.||+..
T Consensus       295 ----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (327)
T TIGR02078       295 ----SYPVIE--EGEFWKKYKVPKEDGIEIIRELHRKV  326 (327)
T ss_pred             ----cccccc--cCCceEEEecCHHHHHHHHHHHHhhh
Confidence                111122  23678999999999999999999864

This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.

>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

Probab=100.00  E-value=2.8e-37  Score=282.45  Aligned_cols=181  Identities=33%  Similarity=0.481  Sum_probs=165.2

Q ss_pred             CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (327)
Q Consensus        31 ~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi  110 (327)
                      .+.+.++.++++||++++.++++.|+++|++++++++.++.+++++.++..++... ..+.++.+++  .+.|||++||+
T Consensus        59 ~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~i~~~-~~~~l~~ll~--~~~ipVi~G~~  135 (239)
T cd04261          59 PPARELDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIIDI-DPDRIRELLE--EGDVVIVAGFQ  135 (239)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCcceechh-hHHHHHHHHH--cCCeEEEcCcc
Confidence            45778899999999999999999999999999999999987766655543333221 2278888888  78999999999


Q ss_pred             ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHH
Q 020388          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII  190 (327)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~  190 (327)
                      +.+++|.++++|||++|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++++.|++++||+|++
T Consensus       136 ~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~  215 (239)
T cd04261         136 GINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVE  215 (239)
T ss_pred             ccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEeecCCCCCCceEEe
Q 020388          191 PVMRYDIPIVIRNIFNLSVPGIMIC  215 (327)
Q Consensus       191 ~a~~~~I~v~I~n~~~~e~~GT~I~  215 (327)
                      +|+++|||++|+|+++|+ +||+|.
T Consensus       216 ~~~~~~i~i~I~n~~~~~-~gt~i~  239 (239)
T cd04261         216 LAKKYGVPLRVLSSFSEE-PGTLIT  239 (239)
T ss_pred             HHHHcCCeEEEecCCCCC-CCcEeC
Confidence            999999999999999998 999984

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and

>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

Probab=100.00  E-value=5.6e-37  Score=281.27  Aligned_cols=182  Identities=34%  Similarity=0.509  Sum_probs=164.9

Q ss_pred             CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCc
Q 020388           30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF  109 (327)
Q Consensus        30 ~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gf  109 (327)
                      ..++..++.++++||.+++.+++++|+++|+++.++++.++.+++.+.++...+.... .+.++.+++  .+.|||++||
T Consensus        63 ~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~~~~~~~v~~~~-~~~l~~ll~--~g~VPVv~g~  139 (244)
T cd04260          63 DISPRELDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKVN-PKKILSALK--EGDVVVVAGF  139 (244)
T ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecCCCCceeeeccC-HHHHHHHHh--CCCEEEecCC
Confidence            4567789999999999999999999999999999999999877776655432221111 266888887  7899999999


Q ss_pred             eecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhH
Q 020388          110 IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI  189 (327)
Q Consensus       110 i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~  189 (327)
                      ++.+++|++++++|||||++|+.+|.+|+|+++++||||||||++||+.++++++|++|+|+|+.++++.|++++||+|+
T Consensus       140 ~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~  219 (244)
T cd04260         140 QGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAV  219 (244)
T ss_pred             cccCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCEEEeecCCCCCCceEEe
Q 020388          190 IPVMRYDIPIVIRNIFNLSVPGIMIC  215 (327)
Q Consensus       190 ~~a~~~~I~v~I~n~~~~e~~GT~I~  215 (327)
                      ++|+++++|++|+|+++|+ +||+|+
T Consensus       220 ~~~~~~~i~v~I~~~~~~~-~gt~i~  244 (244)
T cd04260         220 EIAMQANIPIRIRSTMSEN-PGTLIT  244 (244)
T ss_pred             HHHHHcCCeEEEecCCCCC-CCCEeC
Confidence            9999999999999999988 899984

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet

>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

Probab=100.00  E-value=2.6e-37  Score=280.59  Aligned_cols=198  Identities=39%  Similarity=0.655  Sum_probs=172.3

Q ss_pred             HHHHHHHHHHHhhhc------------CCCChhHHH--HhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCC
Q 020388           14 EFIRSTYNFLSNVDS------------GHATESFTD--FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN   79 (327)
Q Consensus        14 ~~i~~~~~~l~~~~~------------~~~~~~~~d--~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~   79 (327)
                      +.++...+.+.++ .            +..+....+  .++|+||.+|+.+++++|+++|+++.++++.++++++++. +
T Consensus        15 ~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~-~   92 (227)
T cd04234          15 ERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELALLLSFGERLSARLLAAALRDRGIKARSLDARQAGITTDDN-H   92 (227)
T ss_pred             HHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCHHHCCEEcCCc-c
Confidence            4666666666664 2            123333322  6889999999999999999999999999999998876543 2


Q ss_pred             CCCCCchHHHHHHHHHhhcCC-CceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCC
Q 020388           80 QVDPDFSESEKRLEKWFSQSP-SNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRK  158 (327)
Q Consensus        80 ~~~~~~~~~~~~i~~~l~~~~-~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~  158 (327)
                      ..........+.++++++  . +.|||++||++.+++|.++++||||||++|+.+|.+|+|+++++|||||||||+||+.
T Consensus        93 ~~~~~~~~~~~~l~~~l~--~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~  170 (227)
T cd04234          93 GAARIIEISYERLKELLA--EIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI  170 (227)
T ss_pred             chhhHHHHHHHHHHHHHh--hCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCC
Confidence            222334455688888888  7 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEe
Q 020388          159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (327)
Q Consensus       159 ~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~  215 (327)
                      +|+++++++++|+|+.+++..|+++|||+|+++|.++|+|++|+|+++|+.+||+|.
T Consensus       171 ~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~~~gT~I~  227 (227)
T cd04234         171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPEAPGTLIT  227 (227)
T ss_pred             CCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCCCCCCEeC
Confidence            999999999999999999999999999999999999999999999999988899984

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd

>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

Probab=100.00  E-value=1.4e-36  Score=277.70  Aligned_cols=180  Identities=33%  Similarity=0.513  Sum_probs=164.0

Q ss_pred             ChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCcee
Q 020388           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (327)
Q Consensus        32 ~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~  111 (327)
                      +...++.++++||.+++.++++.|+++|+++.++++.++.+.+..++++.++.. ...+.++++++  .+.|||++||+|
T Consensus        60 ~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~~~~-~~~~~l~~ll~--~g~ipVi~g~~~  136 (239)
T cd04246          60 SPRELDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARIID-IDPKRILEALE--EGDVVVVAGFQG  136 (239)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCceeech-hhHHHHHHHHh--cCCEEEEcCccc
Confidence            567889999999999999999999999999999999997666655554333322 23478888888  789999999999


Q ss_pred             cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHH
Q 020388          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (327)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~  191 (327)
                      .+++|.+++++||++|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++++.|++++||+|+++
T Consensus       137 ~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~  216 (239)
T cd04246         137 VNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVEL  216 (239)
T ss_pred             cCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCEEEeecCCCCCCceEEe
Q 020388          192 VMRYDIPIVIRNIFNLSVPGIMIC  215 (327)
Q Consensus       192 a~~~~I~v~I~n~~~~e~~GT~I~  215 (327)
                      |+++|||++|+|+++|+ +||+|+
T Consensus       217 a~~~gi~i~i~~~~~~~-~gt~i~  239 (239)
T cd04246         217 AKKYNVPLRVRSSFSEN-PGTLIT  239 (239)
T ss_pred             HHHCCCeEEEecCCCCC-CCcEeC
Confidence            99999999999999998 999984

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati

>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

Probab=99.97  E-value=2.9e-29  Score=229.71  Aligned_cols=180  Identities=37%  Similarity=0.498  Sum_probs=156.5

Q ss_pred             CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (327)
Q Consensus        31 ~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi  110 (327)
                      .++...+.+++.||.+++.++++.|+++|+++.++++.++.+.+++ ++..........+.++++++  .+.|||++||.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~~-~~~~g~~~~~~~~~l~~~l~--~~~ipVv~g~~  137 (248)
T cd02115          61 ITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASPN-QGHVGKITKVSTDRLKSLLE--NGILPILSGFG  137 (248)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEchHHcCeEeCC-CCCcccceeeCHHHHHHHHh--CCcEEEecCeE
Confidence            4567888999999999999999999999999999999998776543 33322222223478888888  78999999998


Q ss_pred             ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHH
Q 020388          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII  190 (327)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~  190 (327)
                      +.+.+ ...+++|++||++|+.+|.+|+|+++++||||||||++||+++++++++++|+++|+.+++..|..++||+++.
T Consensus       138 ~~~~~-~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~  216 (248)
T cd02115         138 GTDEK-ETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAAD  216 (248)
T ss_pred             eccCC-ceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHH
Confidence            87765 67788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEeecCC--------CCCCceEE
Q 020388          191 PVMRYDIPIVIRNIFN--------LSVPGIMI  214 (327)
Q Consensus       191 ~a~~~~I~v~I~n~~~--------~e~~GT~I  214 (327)
                      ++.++|++++|.++++        ++..||.|
T Consensus       217 ~~~~~~~~v~I~~~~~~~~l~~~~~~~~GT~I  248 (248)
T cd02115         217 PAARAGIPVRIANTENPGALALFTPDGGGTLI  248 (248)
T ss_pred             HHHHcCCcEEEEeCCCcccccccCCCCCCCCC
Confidence            9999999999999887        44556654

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.

>PRK14558 pyrH uridylate kinase; Provisional

Probab=99.93  E-value=2.5e-25  Score=202.59  Aligned_cols=182  Identities=21%  Similarity=0.290  Sum_probs=145.0

Q ss_pred             ccHHHHHHHHHHHHhhhc----------C----------CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccce
Q 020388           11 LSYEFIRSTYNFLSNVDS----------G----------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREV   70 (327)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~----------~----------~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~   70 (327)
                      +..+.|+...+.|.++.+          +          +.++...|.+.+.||+||+.+++.+|.++|+++.++++.  
T Consensus        20 ~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~~~~~~~~~d~ig~~~~~ln~~~~~~~l~~~gi~a~~~~~~--   97 (231)
T PRK14558         20 FDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVELKELSPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQI--   97 (231)
T ss_pred             cCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccc--
Confidence            556677777777665532          1          234556788888899999999999999999999998852  


Q ss_pred             eeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCc
Q 020388           71 LIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDG  150 (327)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~G  150 (327)
                      .. . ..     + .....+.+..+++  .+.|||++||.+   ..      .+.+|++|+++|..|+|+++++||||||
T Consensus        98 ~~-~-~~-----~-~~~~~~~i~~ll~--~g~vpV~~G~~~---~~------~~~~D~~a~~lA~~l~a~~l~~~tdVdG  158 (231)
T PRK14558         98 VN-L-PS-----V-EPINYDDIELYFR--AGYIVIFAGGTS---NP------FFTTDTAAALRAVEMKADILIKATKVDG  158 (231)
T ss_pred             cc-c-ch-----h-hhhhHHHHHHHHH--CCCEEEEECCCC---CC------CCCcHHHHHHHHHHcCCCEEEEEecCCe
Confidence            11 1 11     1 1223477888888  789999999853   11      1236999999999999999999999999


Q ss_pred             cccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCC---------CCceEEeC
Q 020388          151 VYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMICR  216 (327)
Q Consensus       151 i~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e---------~~GT~I~~  216 (327)
                      ||++||+++|+|+++++++++|+.++   |+++|||+|+++|+++|+|++|.|+++|.         ..||.|.+
T Consensus       159 vy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~  230 (231)
T PRK14558        159 IYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP  230 (231)
T ss_pred             eEccCCCCCCCCeEcccccHHHHHHc---CcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence            99999999999999999999998876   78999999999999999999999987543         35777743

>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis

Probab=99.93  E-value=1.3e-24  Score=200.31  Aligned_cols=166  Identities=17%  Similarity=0.288  Sum_probs=134.8

Q ss_pred             hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecC
Q 020388           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (327)
Q Consensus        34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~  113 (327)
                      ..++.++++||..+.++++..|+++|+++.     ++++ +++.+.+... +....+.++.+++  .+.|||+++     
T Consensus        65 ~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~~-----q~l~-t~~~~~~~~~-~~~~~~~i~~ll~--~g~iPVv~~-----  130 (251)
T cd04242          65 PEKQALAAVGQSLLMALYEQLFAQYGIKVA-----QILL-TRDDFEDRKR-YLNARNTLETLLE--LGVIPIINE-----  130 (251)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHcCCeEE-----EEEE-ehhHhcchHH-HHHHHHHHHHHHH--CCCEEEEcC-----
Confidence            556899999999999999999999999973     3333 4333322111 2223466788887  789999964     


Q ss_pred             CCCCeee--ecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecC--HHHHHHHH-----hcCCCcc
Q 020388          114 PDNIPTT--LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS--YQEAWEMS-----YFGANVL  184 (327)
Q Consensus       114 ~~g~~~~--lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is--~~ea~~l~-----~~g~~v~  184 (327)
                       ++.+++  ++||++|++|+++|.+|+|++++|||||||||++||+.+|++++|++++  ++|+.+++     .+|+++|
T Consensus       131 -~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm  209 (251)
T cd04242         131 -NDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGM  209 (251)
T ss_pred             -CCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCc
Confidence             234444  7899999999999999999999999999999999999999999999999  99999985     5788999


Q ss_pred             cH--hhHHHHHhCCCCEEEeecCCCC---------CCceEE
Q 020388          185 HP--RTIIPVMRYDIPIVIRNIFNLS---------VPGIMI  214 (327)
Q Consensus       185 ~p--~a~~~a~~~~I~v~I~n~~~~e---------~~GT~I  214 (327)
                      +|  +++..+.++|++++|.|++.|+         ..||.|
T Consensus       210 ~~Kl~a~~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i  250 (251)
T cd04242         210 RTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTLF  250 (251)
T ss_pred             HHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHcCCCCCeEe
Confidence            99  6889999999999999987553         357765

G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir

>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

Probab=99.92  E-value=3.4e-24  Score=194.83  Aligned_cols=152  Identities=22%  Similarity=0.265  Sum_probs=130.4

Q ss_pred             hhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (327)
Q Consensus        33 ~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~  112 (327)
                      +...+.+.+.|+++++.+|+..|.++|+++..+++.++..++.      ..+.    +.+..+++  .+.|||++||.+.
T Consensus        62 ~~~~~~~~~~~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~~~------~~~~----~~l~~~l~--~g~ipVi~g~~g~  129 (229)
T cd04239          62 RATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAE------PYIR----RRAIRHLE--KGRIVIFGGGTGN  129 (229)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCHHHHhhhhc------cccH----HHHHHHHh--CCCEEEEeCccCC
Confidence            4557788899999999999999999999999999987744321      1223    66888887  8899999999642


Q ss_pred             CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHH
Q 020388          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPV  192 (327)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a  192 (327)
                      .     .    +.+|++|+.+|.+|+|+++++||||||||++||+.+|++++|++++++|+.+++.   +++||.|++++
T Consensus       130 ~-----~----~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~---~~~~~~a~~~~  197 (229)
T cd04239         130 P-----G----FTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL---KVMDATALTLC  197 (229)
T ss_pred             C-----C----CCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhc---CCccHHHHHHH
Confidence            2     1    2479999999999999999999999999999999999999999999999988864   88999999999


Q ss_pred             HhCCCCEEEeecCCCC
Q 020388          193 MRYDIPIVIRNIFNLS  208 (327)
Q Consensus       193 ~~~~I~v~I~n~~~~e  208 (327)
                      .++|+|++|.|++.|+
T Consensus       198 ~~~~i~v~I~~g~~~~  213 (229)
T cd04239         198 RRNKIPIIVFNGLKPG  213 (229)
T ss_pred             HHCCCeEEEECCCChh
Confidence            9999999999987653

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als

>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families

Probab=99.92  E-value=2.1e-25  Score=203.42  Aligned_cols=112  Identities=35%  Similarity=0.488  Sum_probs=107.6

Q ss_pred             HHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecC
Q 020388           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is  169 (327)
                      +.++++++  .+.|||++||.+.+.+|++++++++++|++|+.||.+|+|++++|||||||||++||+.+|+++++++|+
T Consensus       125 ~~i~~~l~--~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~  202 (242)
T PF00696_consen  125 EAIRELLE--QGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELS  202 (242)
T ss_dssp             HHHHHHHH--TTSEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEE
T ss_pred             HHHHHHHH--CCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEee
Confidence            78888998  7999999999989999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH------hcCCCcccHhhHHHHHhCCCCEEEee
Q 020388          170 YQEAWEMS------YFGANVLHPRTIIPVMRYDIPIVIRN  203 (327)
Q Consensus       170 ~~ea~~l~------~~g~~v~~p~a~~~a~~~~I~v~I~n  203 (327)
                      ++|+.+++      ..|++++||.|+++++++++|++|+|
T Consensus       203 ~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n  242 (242)
T PF00696_consen  203 YDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIPVHIIN  242 (242)
T ss_dssp             HHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred             HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence            99999999      78899999999999999999999986

In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....

>PRK00358 pyrH uridylate kinase; Provisional

Probab=99.92  E-value=5.4e-24  Score=193.72  Aligned_cols=150  Identities=23%  Similarity=0.281  Sum_probs=124.2

Q ss_pred             HHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCC
Q 020388           35 FTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (327)
Q Consensus        35 ~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~  114 (327)
                      ..+.+.+.++++++.+++..|+++|+++..+++..+...++      ..    ..+.+.++++  .+.|||++|+.+   
T Consensus        66 ~~~~~~~~~~~l~~~ll~~~l~~~Gi~a~~~~~~~~~~~~~------~~----~~~~~~~~l~--~g~vPVv~g~~~---  130 (231)
T PRK00358         66 TADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVAE------PY----IRRRAIRHLE--KGRVVIFAAGTG---  130 (231)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcccccC------cc----cHHHHHHHHH--CCCEEEEECCCC---
Confidence            45777788999999999999999999998776654422221      01    1255678887  789999988632   


Q ss_pred             CCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHh
Q 020388          115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR  194 (327)
Q Consensus       115 ~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~  194 (327)
                      +.      .+.+|++|+.+|.+|+|+++++||||||||++||+.+|+|+++++++++|+.++   |++++|+.++++|.+
T Consensus       131 ~~------~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~  201 (231)
T PRK00358        131 NP------FFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEK---GLKVMDATAISLARD  201 (231)
T ss_pred             CC------CCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHc---CCcchhHHHHHHHHH
Confidence            11      134799999999999999999999999999999999999999999999987776   899999999999999


Q ss_pred             CCCCEEEeecCCCC
Q 020388          195 YDIPIVIRNIFNLS  208 (327)
Q Consensus       195 ~~I~v~I~n~~~~e  208 (327)
                      +|++++|.|+++|+
T Consensus       202 ~~i~v~I~~g~~~~  215 (231)
T PRK00358        202 NKIPIIVFNMNKPG  215 (231)
T ss_pred             cCCcEEEECCCCch
Confidence            99999999987553

>PRK12314 gamma-glutamyl kinase; Provisional

Probab=99.92  E-value=7.5e-24  Score=196.59  Aligned_cols=169  Identities=17%  Similarity=0.225  Sum_probs=131.4

Q ss_pred             hhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (327)
Q Consensus        33 ~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~  112 (327)
                      .+.++.++|+||.++..++..+|+++|+++     +++++ +++.+.+... +....+.++.+++  .|.|||+++    
T Consensus        74 ~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~-----~q~ll-T~~~~~~~~~-~~~~~~~l~~ll~--~g~IPVv~~----  140 (266)
T PRK12314         74 LAEKQALAAVGQPELMSLYSKFFAEYGIVV-----AQILL-TRDDFDSPKS-RANVKNTFESLLE--LGILPIVNE----  140 (266)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHcCCeE-----EEEEE-ecccccchHH-HHHHHHHHHHHHH--CCCEEEEcC----
Confidence            466799999999999999999999999975     56644 4444433222 2234467888887  789999964    


Q ss_pred             CCCCCeeeec----CCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCH--HHHHHHHhc-----CC
Q 020388          113 TPDNIPTTLK----RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSYF-----GA  181 (327)
Q Consensus       113 ~~~g~~~~lg----rggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~--~ea~~l~~~-----g~  181 (327)
                        ++.+++.+    ||++|++|+++|.+|+|+.++|||||||||++||+.+|+|++|++|++  .|..+++..     |+
T Consensus       141 --nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~t  218 (266)
T PRK12314        141 --NDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGT  218 (266)
T ss_pred             --CCCeeeccccceecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCccc
Confidence              23333333    788999999999999999999999999999999999999999999986  555555432     44


Q ss_pred             CcccH--hhHHHHHhCCCCEEEeecCCC---------CCCceEEeC
Q 020388          182 NVLHP--RTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (327)
Q Consensus       182 ~v~~p--~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~~  216 (327)
                      ++|.|  +|+..|.++|++++|.+++.|         +..||+|.+
T Consensus       219 GGM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g~~~GT~i~~  264 (266)
T PRK12314        219 GGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTLFAP  264 (266)
T ss_pred             CchHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcCCCCceEEcc
Confidence            55555  699999999999999998654         346998865

>PRK14557 pyrH uridylate kinase; Provisional

Probab=99.90  E-value=4.4e-23  Score=189.20  Aligned_cols=162  Identities=17%  Similarity=0.272  Sum_probs=127.4

Q ss_pred             ChhHHHHhhhhcHHHHHHHHHHHHHHc-CCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388           32 TESFTDFVVGHGELWSAQMLAAVVRKN-GIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (327)
Q Consensus        32 ~~~~~d~v~s~GE~~s~~l~~~~L~~~-Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi  110 (327)
                      +....|.+.++||++|+.++...|++. +.++.        +.++..++... . +....++.+.++  .+.|||++||.
T Consensus        67 ~~~~~D~ig~~g~~lna~ll~~~l~~~~~~~~~--------i~t~~~~~~~~-~-~~~~~~~~~~l~--~g~VvV~~G~~  134 (247)
T PRK14557         67 DRVEADNIGTLGTIINSLMLRGVLTSKTNKEVR--------VMTSIPFNAVA-E-PYIRLRAVHHLD--NGYIVIFGGGN  134 (247)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhhhCCcee--------EEecccccccc-c-hhhHHHHHHHHh--CCCEEEEECCc
Confidence            345668999999999999999999984 55443        33333332211 1 112244555676  77899999987


Q ss_pred             ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEee-ccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhH
Q 020388          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI  189 (327)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~t-DV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~  189 (327)
                      +.   +.++      +|++|+++|.+++|+.+++|| |||||||+||+.+|+|++|++++|.|+.   ..+.++|+++|+
T Consensus       135 g~---~~~s------tD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~---~~~~~~~~~~A~  202 (247)
T PRK14557        135 GQ---PFVT------TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVV---RQNIQVMDQAAL  202 (247)
T ss_pred             CC---CccC------hHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhc---ccCHHHHHHHHH
Confidence            63   3333      499999999999999999995 9999999999999999999999999874   457789999999


Q ss_pred             HHHHhCCCCEEEeecCCCC---------CCceEEeCC
Q 020388          190 IPVMRYDIPIVIRNIFNLS---------VPGIMICRP  217 (327)
Q Consensus       190 ~~a~~~~I~v~I~n~~~~e---------~~GT~I~~~  217 (327)
                      ++|.++|||++|.|+.+|+         ..||+|.+.
T Consensus       203 ~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~  239 (247)
T PRK14557        203 LLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD  239 (247)
T ss_pred             HHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecC
Confidence            9999999999999987543         469999764

>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=99.90  E-value=4.4e-23  Score=187.83  Aligned_cols=155  Identities=24%  Similarity=0.278  Sum_probs=130.3

Q ss_pred             HHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCC
Q 020388           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (327)
Q Consensus        36 ~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~  115 (327)
                      .|.+.+.|+++++.+++..|+++|+++.++++.++..+.      ..++.    +.++++++  .+.|||++||.|    
T Consensus        67 ~d~~g~~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~~~~------~~~~~----~~l~~~l~--~g~ipV~~g~~G----  130 (231)
T cd04254          67 ADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGVA------EPYIR----RRAIRHLE--KGRVVIFAGGTG----  130 (231)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCeEEEcHHHhhhhh------cccCH----HHHHHHHH--CCCEEEEECCcC----
Confidence            466777899999999999999999999999998862221      11344    78888888  789999998854    


Q ss_pred             CCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhC
Q 020388          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRY  195 (327)
Q Consensus       116 g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~  195 (327)
                       ...+    .+|++|+++|.+|+|+++++||||||||++||+.+|+++++++++++|+.+   .|++++|+.++++|.++
T Consensus       131 -~~~~----~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~---~~~~~~d~~a~~~a~~~  202 (231)
T cd04254         131 -NPFF----TTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLS---KGLKVMDATAFTLCRDN  202 (231)
T ss_pred             -CCCC----CcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHh---cchhhhHHHHHHHHHHC
Confidence             1111    259999999999999999999999999999999999999999999998866   47889999999999999


Q ss_pred             CCCEEEeecCCCC---------CCceEE
Q 020388          196 DIPIVIRNIFNLS---------VPGIMI  214 (327)
Q Consensus       196 ~I~v~I~n~~~~e---------~~GT~I  214 (327)
                      |++++|.|+++|+         ..||+|
T Consensus       203 gi~~~I~~g~~~~~l~~~l~g~~~GT~i  230 (231)
T cd04254         203 NLPIVVFNINEPGNLLKAVKGEGVGTLI  230 (231)
T ss_pred             CCeEEEEeCCCccHHHHHHCCCCCCEEe
Confidence            9999999987543         357776

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be

>PRK13402 gamma-glutamyl kinase; Provisional

Probab=99.90  E-value=1.1e-22  Score=196.21  Aligned_cols=194  Identities=16%  Similarity=0.252  Sum_probs=150.1

Q ss_pred             cccHHHHHHHHHHHHhhhcC----------------------C-CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEc
Q 020388           10 ELSYEFIRSTYNFLSNVDSG----------------------H-ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD   66 (327)
Q Consensus        10 ~~~~~~i~~~~~~l~~~~~~----------------------~-~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~   66 (327)
                      .+..+++....+.+..+...                      . ..-..++.+.++||.++...+...|+++|+++.   
T Consensus        23 ~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~~~l~~~~~~~~~~~qalaavGq~~l~~~~~~~f~~~g~~~a---   99 (368)
T PRK13402         23 GCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGYHKLGFIDRPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPAA---   99 (368)
T ss_pred             CcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCccccCCCCCCCccHHHHHHHhhHHHHHHHHHHHHHHCCCeEE---
Confidence            45667777776666655431                      0 123567889999999999999999999999984   


Q ss_pred             ccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeee--ecCCcchHHHHHHHHHhCCceEEE
Q 020388           67 TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT--LKRDGSDFSAAIMGALLRAHQVTI  144 (327)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~--lgrggsD~~A~~lA~~l~A~~l~~  144 (327)
                        +++++. +.+.+ .-.|...++.+..+++  .+.|||+..      ++.+++  ++||++|++|+++|.+++|+.+++
T Consensus       100 --qvLlT~-~d~~~-~~~y~n~~~~l~~LL~--~g~IPIine------nD~v~~~el~~GdnD~lAa~vA~~l~Ad~Lii  167 (368)
T PRK13402        100 --QLLLTH-GDLRD-RERYINIRNTINVLLE--RGILPIINE------NDAVTTDRLKVGDNDNLSAMVAALADADTLII  167 (368)
T ss_pred             --EEEEec-chhhh-HHHHHHHHHHHHHHHH--CCcEEEEeC------CCcEeecccccCChHHHHHHHHHHhCCCEEEE
Confidence              333333 22211 1123344577888887  889999863      233444  788999999999999999999999


Q ss_pred             eeccCccccCCCCCCCCCeEEeecCH--HHHHHHH-----hcCCCcccH--hhHHHHHhCCCCEEEeecCCC--------
Q 020388          145 WTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMS-----YFGANVLHP--RTIIPVMRYDIPIVIRNIFNL--------  207 (327)
Q Consensus       145 ~tDV~Gi~t~dP~~~~~a~~i~~is~--~ea~~l~-----~~g~~v~~p--~a~~~a~~~~I~v~I~n~~~~--------  207 (327)
                      ||||||||++||+.+|++++|+++++  +|+.+++     ..|+++|+|  .|+..|.++|++++|.++..|        
T Consensus       168 lTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~  247 (368)
T PRK13402        168 LSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLK  247 (368)
T ss_pred             EecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHhc
Confidence            99999999999999999999999997  6777776     467899999  589999999999999998765        


Q ss_pred             -CCCceEEeCCC
Q 020388          208 -SVPGIMICRPP  218 (327)
Q Consensus       208 -e~~GT~I~~~~  218 (327)
                       +..||+|.+..
T Consensus       248 g~~~GT~i~~~~  259 (368)
T PRK13402        248 GQNPGTYFTPEE  259 (368)
T ss_pred             CCCCceEEecCC
Confidence             34699997653

>TIGR02075 pyrH_bact uridylate kinase

Probab=99.89  E-value=1.8e-22  Score=184.03  Aligned_cols=155  Identities=22%  Similarity=0.275  Sum_probs=129.9

Q ss_pred             HHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCC
Q 020388           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (327)
Q Consensus        36 ~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~  115 (327)
                      .|.+.+.++++++++|+..|+++|+++.++++.++.. ....         ...+.++++++  .+.|||++|+.+.   
T Consensus        68 ~d~~g~~~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~~-~~~~---------~~~~~i~~ll~--~g~VpV~~g~~g~---  132 (233)
T TIGR02075        68 ADYMGMLATVINGLALRDALEKLGVKTRVLSAISMPQ-ICES---------YIRRKAIKHLE--KGKVVIFSGGTGN---  132 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCcEEeccccCCC-Cccc---------cCHHHHHHHHH--CCCEEEEECCCCC---
Confidence            5778888999999999999999999999999988651 1111         12367777887  7899999987542   


Q ss_pred             CCeeeecCCcchHHHHHHHHHhCCceEEEeec-cCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHh
Q 020388          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR  194 (327)
Q Consensus       116 g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tD-V~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~  194 (327)
                      ..      ..+|++|+++|..|+|+.+++||| |||||++||+++|+++++++++++|+.++   |++++|+.++++|.+
T Consensus       133 ~~------~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~---~~~~~d~~~~~~a~~  203 (233)
T TIGR02075       133 PF------FTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK---NLKVMDLTAFALARD  203 (233)
T ss_pred             CC------CCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhc---CHHHHHHHHHHHHHH
Confidence            11      235999999999999999999999 99999999999999999999999998764   778999999999999


Q ss_pred             CCCCEEEeecCCCC---------CCceEE
Q 020388          195 YDIPIVIRNIFNLS---------VPGIMI  214 (327)
Q Consensus       195 ~~I~v~I~n~~~~e---------~~GT~I  214 (327)
                      +|++++|.|+.+|+         ..||.|
T Consensus       204 ~~i~v~i~~g~~~~~l~~~l~g~~~GT~i  232 (233)
T TIGR02075       204 NNLPIVVFNIDEPGALKKVILGKGIGTLV  232 (233)
T ss_pred             CCCeEEEEeCCCcchHHHHHCCCCCCEEe
Confidence            99999999986543         457766

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.

>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]

Probab=99.88  E-value=1.6e-21  Score=173.79  Aligned_cols=181  Identities=23%  Similarity=0.280  Sum_probs=146.7

Q ss_pred             ccHHHHHHHHHHHHhhhcC----------------------CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEccc
Q 020388           11 LSYEFIRSTYNFLSNVDSG----------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (327)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~~----------------------~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~   68 (327)
                      ...++++...+.|.++.+.                      ..+....|++=....+++|.+|...|.+.|++++.+++.
T Consensus        25 id~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai  104 (238)
T COG0528          25 IDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLATVMNALALQDALERLGVDTRVQSAI  104 (238)
T ss_pred             CCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccc
Confidence            4667888888888887741                      244566788888899999999999999999999999887


Q ss_pred             ceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeec-
Q 020388           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD-  147 (327)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tD-  147 (327)
                      .+..+.          .+.+.+...++++  .+.|+|..|  | +.+-.+||      |++|+++|..++||-++..|+ 
T Consensus       105 ~~~~~~----------e~~~~~~A~~~l~--~grVvIf~g--G-tg~P~fTT------Dt~AALrA~ei~ad~ll~atn~  163 (238)
T COG0528         105 AMPQVA----------EPYSRREAIRHLE--KGRVVIFGG--G-TGNPGFTT------DTAAALRAEEIEADVLLKATNK  163 (238)
T ss_pred             cCcccc----------CccCHHHHHHHHH--cCCEEEEeC--C-CCCCCCch------HHHHHHHHHHhCCcEEEEeccC
Confidence            764222          1233466777787  889999876  2 22333343      999999999999999999995 


Q ss_pred             cCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCC---------CCCceEEe
Q 020388          148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (327)
Q Consensus       148 V~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~  215 (327)
                      |||||++||+++|+|+.+++|||.|+.++   +.++|+|.|+.+|++++||++++|.+.+         +..||.|.
T Consensus       164 VDGVY~~DPkk~pdA~~~~~Lty~e~l~~---~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~  237 (238)
T COG0528         164 VDGVYDADPKKDPDAKKYDTLTYDEVLKI---GLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVE  237 (238)
T ss_pred             CCceeCCCCCCCCCceecccCCHHHHHHh---cCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEec
Confidence            99999999999999999999999998877   5899999999999999999999997644         24577663

>PRK14556 pyrH uridylate kinase; Provisional

Probab=99.87  E-value=1.7e-21  Score=177.69  Aligned_cols=181  Identities=19%  Similarity=0.251  Sum_probs=143.9

Q ss_pred             ccHHHHHHHHHHHHhhhc----------------C---C----CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcc
Q 020388           11 LSYEFIRSTYNFLSNVDS----------------G---H----ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDT   67 (327)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~----------------~---~----~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~   67 (327)
                      ++.++++...+.+.++.+                +   .    ......|++=..+.+++|.++...|.+.|++++.+++
T Consensus        35 ~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa  114 (249)
T PRK14556         35 INVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMINALALRDMLISEGVDAEVFSA  114 (249)
T ss_pred             cCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeec
Confidence            445666666666666554                1   1    3344778888899999999999999999999999887


Q ss_pred             cceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeec
Q 020388           68 REVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD  147 (327)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tD  147 (327)
                      ..+.-     +    +.+ .+.+.+.++++  ++.|+|+.|+.|   ++.++      +|++|+++|..++|+.+++|||
T Consensus       115 ~~~~~-----~----~e~-~~~~~~~~~l~--~g~vvi~~gg~G---~p~~S------tD~lAallA~~l~Ad~Lii~Td  173 (249)
T PRK14556        115 KGVDG-----L----LKV-ASAHEFNQELA--KGRVLIFAGGTG---NPFVT------TDTTASLRAVEIGADALLKATT  173 (249)
T ss_pred             cccCc-----C----CCC-CCHHHHHHHHh--CCCEEEEECCCC---CCcCC------cHHHHHHHHHHcCCCEEEEEeC
Confidence            55421     1    111 14477778887  788999888654   34444      3999999999999999999999


Q ss_pred             cCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCC---------CCCceEEe
Q 020388          148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (327)
Q Consensus       148 V~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~  215 (327)
                      ||||||+||+++|+|+++++++|.|+.+.   +..+|++.|+++|+++|+|++|.|++.|         +..||+|.
T Consensus       174 VDGVYd~DP~~~p~A~~i~~I~~~e~~~~---~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~  247 (249)
T PRK14556        174 VNGVYDKDPNKYSDAKRFDKVTFSEVVSK---ELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVT  247 (249)
T ss_pred             CCccCCCCCCCCCCceEeeEEchhhhccc---chHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEE
Confidence            99999999999999999999999988653   5689999999999999999999998654         34688874

>TIGR01027 proB glutamate 5-kinase

Probab=99.86  E-value=5.9e-21  Score=184.41  Aligned_cols=171  Identities=17%  Similarity=0.260  Sum_probs=133.6

Q ss_pred             hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEec-Cceec
Q 020388           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIAT-GFIAS  112 (327)
Q Consensus        34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~-Gfi~~  112 (327)
                      ..++.+.++|+.++..++...|.++|+++.     +++++. +.+.+ ...+...+..+..+++  .+.|||++ ++.. 
T Consensus        66 ~~~qa~aa~Gq~~l~~~~~~~l~~~Gi~~a-----qillt~-~d~~~-~~~~lna~~~i~~Ll~--~g~iPVi~end~v-  135 (363)
T TIGR01027        66 AEKQALAAVGQVRLMQLYEQLFSQYGIKVA-----QILLTR-ADFSD-RERYLNARNTLEALLE--LGVVPIINENDTV-  135 (363)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHcCCeEE-----EEEEec-cchhh-HHHHHHHHHHHHHHHh--CCCEEEEeCCCce-
Confidence            366889999999999999999999999963     333333 22221 1122334467788887  78999996 3211 


Q ss_pred             CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHH--HHHHHH-----hcCCCccc
Q 020388          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ--EAWEMS-----YFGANVLH  185 (327)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~--ea~~l~-----~~g~~v~~  185 (327)
                          ..+.+++|++|++|+++|.+++|+.++|||||||||++||+.+|+|++|+++++.  +..+++     .+|+++|+
T Consensus       136 ----~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~  211 (363)
T TIGR01027       136 ----ATEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMR  211 (363)
T ss_pred             ----eeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCch
Confidence                1234678899999999999999999999999999999999999999999999864  455554     47889999


Q ss_pred             Hh--hHHHHHhCCCCEEEeecCCCC---------CCceEEeCCC
Q 020388          186 PR--TIIPVMRYDIPIVIRNIFNLS---------VPGIMICRPP  218 (327)
Q Consensus       186 p~--a~~~a~~~~I~v~I~n~~~~e---------~~GT~I~~~~  218 (327)
                      ||  |+..|.++|++++|.++..|+         ..||+|.+..
T Consensus       212 ~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  255 (363)
T TIGR01027       212 TKLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGTLFHAQA  255 (363)
T ss_pred             HHHHHHHHHHHCCCeEEEEeCCCccHHHHHhcCCCCcEEEeeCC
Confidence            98  899999999999999987542         4699997643

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.

>PRK05429 gamma-glutamyl kinase; Provisional

Probab=99.86  E-value=6.2e-21  Score=184.92  Aligned_cols=170  Identities=19%  Similarity=0.267  Sum_probs=134.0

Q ss_pred             hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecC
Q 020388           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (327)
Q Consensus        34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~  113 (327)
                      ..++.+++.||..+++++...|+++|+++..+     ++ +.+.+.. ...+......+..+++  .+.|||+++     
T Consensus        74 ~~~qa~aavGq~~L~~~~~~~l~~~gi~~~qi-----l~-t~~d~~~-~~~~ln~~~~i~~Ll~--~g~IPVi~~-----  139 (372)
T PRK05429         74 AEKQAAAAVGQSRLMQAYEELFARYGITVAQI-----LL-TRDDLED-RERYLNARNTLRTLLE--LGVVPIINE-----  139 (372)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHCCCCEEEE-----Ee-ehhHhhh-hhHhhhHHHHHHHHHH--CCCEEEEcC-----
Confidence            46688999999999999999999999997553     22 2222211 1112233466788887  789999963     


Q ss_pred             CCCCe--eeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCH--HHHHHHHh-----cCCCcc
Q 020388          114 PDNIP--TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVL  184 (327)
Q Consensus       114 ~~g~~--~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~--~ea~~l~~-----~g~~v~  184 (327)
                       ++.+  ..+++|++|++|+++|.+|+|+.++|||||||||++||+.+|++++|+++++  +|+.+++.     +|+++|
T Consensus       140 -nd~v~~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM  218 (372)
T PRK05429        140 -NDTVATDEIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGM  218 (372)
T ss_pred             -CCccceecccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCc
Confidence             1221  1257789999999999999999999999999999999999999999999998  67888763     678899


Q ss_pred             cH--hhHHHHHhCCCCEEEeecCCC---------CCCceEEeCCC
Q 020388          185 HP--RTIIPVMRYDIPIVIRNIFNL---------SVPGIMICRPP  218 (327)
Q Consensus       185 ~p--~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~~~~  218 (327)
                      +|  .|+..|.++|++++|.|+..|         +..||.|.+..
T Consensus       219 ~~Kl~aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  263 (372)
T PRK05429        219 ATKLEAARIATRAGIPVVIASGREPDVLLRLLAGEAVGTLFLPQE  263 (372)
T ss_pred             HHHHHHHHHHHHCCCeEEEEcCCCccHHHHHhcCCCCCEEEeeCC
Confidence            99  588999999999999997654         34699998653

>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=99.85  E-value=2.5e-20  Score=168.61  Aligned_cols=139  Identities=22%  Similarity=0.235  Sum_probs=115.6

Q ss_pred             hhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (327)
Q Consensus        33 ~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~  112 (327)
                      +...|.+...++.+++.++...|. .|+++..+                  +.    +.+.++++  .+.|||++||++ 
T Consensus        60 ~~~~d~~g~~~~~ln~~~~~~~l~-~~~~~~~~------------------~~----~~~~~~l~--~g~vpv~~G~~~-  113 (221)
T cd04253          60 EAFLDEIGIMATRLNARLLIAALG-DAYPPVPT------------------SY----EEALEAMF--TGKIVVMGGTEP-  113 (221)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHh-cCCCcCCC------------------CH----HHHHHHHH--cCCeEEEECCCC-
Confidence            345677778889999999888877 77765432                  12    45566776  789999999964 


Q ss_pred             CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhc-----CC-CcccH
Q 020388          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-----GA-NVLHP  186 (327)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~-----g~-~v~~p  186 (327)
                         + .+      +|++|+++|..|+|+.+++||||||||++||+.+|+++++++++++|+.+++..     |+ .++++
T Consensus       114 ---~-~s------~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~  183 (221)
T cd04253         114 ---G-QS------TDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDP  183 (221)
T ss_pred             ---C-Cc------cHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHH
Confidence               2 22      399999999999999999999999999999999999999999999999999865     44 57899


Q ss_pred             hhHHHHHhCCCCEEEeecCCC
Q 020388          187 RTIIPVMRYDIPIVIRNIFNL  207 (327)
Q Consensus       187 ~a~~~a~~~~I~v~I~n~~~~  207 (327)
                      .+++++.++|++++|.|+..|
T Consensus       184 ~a~~~~~~~gi~~~I~~g~~p  204 (221)
T cd04253         184 LAAKIIERSGIKTIVVDGRDP  204 (221)
T ss_pred             HHHHHHHHCCCeEEEECCCCc
Confidence            999999999999999988654

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi

>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms

Probab=99.84  E-value=4.6e-20  Score=169.91  Aligned_cols=145  Identities=15%  Similarity=0.187  Sum_probs=120.9

Q ss_pred             HHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchH
Q 020388           49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDF  128 (327)
Q Consensus        49 ~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~  128 (327)
                      ..+.++|.++|+++.++++.+++.+..+..  ..++.    +.++++++  .+.|||++|+++.+.+|.+.++   ++|+
T Consensus        83 ~~~~~~l~~~g~~a~~l~~~~~~~~~~g~~--~~~~~----~~l~~ll~--~g~iPVi~~~~~~~~~~~~~~~---~~D~  151 (252)
T cd04241          83 SIVVDALLEAGVPAVSVPPSSFFVTENGRI--VSFDL----EVIKELLD--RGFVPVLHGDVVLDEGGGITIL---SGDD  151 (252)
T ss_pred             HHHHHHHHHCCCCeEEEChHHeEEecCCee--eeecH----HHHHHHHh--CCCEEEEcCCeEecCCCCeEEe---ChHH
Confidence            467899999999999999999866542211  23444    78888888  8999999999888888877665   3799


Q ss_pred             HHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh-------cCCCcccHh--hHHHHHhCCCCE
Q 020388          129 SAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY-------FGANVLHPR--TIIPVMRYDIPI  199 (327)
Q Consensus       129 ~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~-------~g~~v~~p~--a~~~a~~~~I~v  199 (327)
                      +|+.+|.+|+|+++++||||||||++||   |+++++++++++++.++..       ...++|.+|  ++..|.++|+++
T Consensus       152 ~A~~lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v  228 (252)
T cd04241         152 IVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEV  228 (252)
T ss_pred             HHHHHHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeE
Confidence            9999999999999999999999999999   8899999999988888765       245789986  777777899999


Q ss_pred             EEeecCCC
Q 020388          200 VIRNIFNL  207 (327)
Q Consensus       200 ~I~n~~~~  207 (327)
                      +|.++..|
T Consensus       229 ~I~~g~~~  236 (252)
T cd04241         229 YIFNGDKP  236 (252)
T ss_pred             EEEeCCCH
Confidence            99988654

Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>TIGR02076 pyrH_arch uridylate kinase, putative

Probab=99.83  E-value=8.2e-20  Score=165.19  Aligned_cols=141  Identities=23%  Similarity=0.248  Sum_probs=114.8

Q ss_pred             hhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (327)
Q Consensus        33 ~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~  112 (327)
                      +...|.+...+++++++++...|...++++...+                  .    ....+.+.  .+.+||++||++ 
T Consensus        59 ~~~~~~~g~~~~~ln~~~l~~ll~~~~~~~~~~~------------------~----~~~~~~l~--~g~ipv~~G~~~-  113 (221)
T TIGR02076        59 ETFLDEIGIDATRLNAMLLIAALGDDAYPKVPEN------------------F----EEALEAMS--LGKIVVMGGTHP-  113 (221)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHhcCCCCcCCC------------------H----HHHHHHHH--cCCEEEEcCCCC-
Confidence            4456777888999999999988887787764321                  1    22244555  678999999862 


Q ss_pred             CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh---cCCC---cccH
Q 020388          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY---FGAN---VLHP  186 (327)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~---~g~~---v~~p  186 (327)
                         | .+      +|++|+++|.+|+|+.+++||||||||++||+++|++++|++++++|+.+++.   +|.+   .+++
T Consensus       114 ---~-~s------~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~  183 (221)
T TIGR02076       114 ---G-HT------TDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDP  183 (221)
T ss_pred             ---C-CC------cHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHH
Confidence               2 22      49999999999999999999999999999999999999999999999999876   3333   5788


Q ss_pred             hhHHHHHhCCCCEEEeecCCCC
Q 020388          187 RTIIPVMRYDIPIVIRNIFNLS  208 (327)
Q Consensus       187 ~a~~~a~~~~I~v~I~n~~~~e  208 (327)
                      .|++.+.+.+++++|.++..|+
T Consensus       184 ~a~~~~~~~~i~v~I~~g~~~~  205 (221)
T TIGR02076       184 LAAKIIERSKIRTIVVNGRDPE  205 (221)
T ss_pred             HHHHHHHHCCCcEEEECCCCcc
Confidence            9999999999999999987553

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.

>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]

Probab=99.83  E-value=2.5e-19  Score=167.91  Aligned_cols=194  Identities=15%  Similarity=0.247  Sum_probs=155.0

Q ss_pred             cccHHHHHHHHHHHHhhhcC------------------------CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEE
Q 020388           10 ELSYEFIRSTYNFLSNVDSG------------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWM   65 (327)
Q Consensus        10 ~~~~~~i~~~~~~l~~~~~~------------------------~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l   65 (327)
                      ++...++..+...+..+.+.                        +..=..++.+.+.|+......+...|..+|+++   
T Consensus        24 ~l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~~~Lg~~~rp~~l~~kQA~AAVGQ~~Lm~~y~~~f~~~g~~v---  100 (369)
T COG0263          24 GLDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAGRTRLGLPKRPKTLAEKQAAAAVGQVRLMQLYEELFARYGIKV---  100 (369)
T ss_pred             CcCHHHHHHHHHHHHHHHhCCCEEEEEccchhhhChhhcCCCCCCcchHHHHHHHHhCHHHHHHHHHHHHHhcCCee---
Confidence            45567777887777777651                        223378889999999999999999999999987   


Q ss_pred             cccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeee--ecCCcchHHHHHHHHHhCCceEE
Q 020388           66 DTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT--LKRDGSDFSAAIMGALLRAHQVT  143 (327)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~--lgrggsD~~A~~lA~~l~A~~l~  143 (327)
                        .+++++.++ +.+ ...|...+..+..+++  .|.|||+      |||+-+.+  +-+|++|.+++.+|...+||.|+
T Consensus       101 --~QiLLTr~D-~~~-r~ry~Nar~Tl~~Ll~--~gvVPII------NENDtva~~EikfGDND~LsA~VA~lv~ADlLv  168 (369)
T COG0263         101 --GQILLTRDD-FSD-RRRYLNARNTLSALLE--LGVVPII------NENDTVATEEIKFGDNDTLSALVAILVGADLLV  168 (369)
T ss_pred             --eEEEeehhh-hhh-HHHHHHHHHHHHHHHH--CCceeee------cCCCceeeeeeeecCCchHHHHHHHHhCCCEEE
Confidence              566665432 211 1245566777888888  8999998      56666544  56788999999999999999999


Q ss_pred             EeeccCccccCCCCCCCCCeEEeecCH--HHHHHHHh-----cCCCcccHh--hHHHHHhCCCCEEEeecCCCC------
Q 020388          144 IWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVLHPR--TIIPVMRYDIPIVIRNIFNLS------  208 (327)
Q Consensus       144 ~~tDV~Gi~t~dP~~~~~a~~i~~is~--~ea~~l~~-----~g~~v~~p~--a~~~a~~~~I~v~I~n~~~~e------  208 (327)
                      ++||+||+||+||+.+|+|++|++++-  .|...++.     +|+++|..|  |++.|.++|++++|.++.+|.      
T Consensus       169 lLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~  248 (369)
T COG0263         169 LLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDAL  248 (369)
T ss_pred             EEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcchHHHHH
Confidence            999999999999999999999999863  36666664     778999996  999999999999999998653      


Q ss_pred             ---CCceEEeCCC
Q 020388          209 ---VPGIMICRPP  218 (327)
Q Consensus       209 ---~~GT~I~~~~  218 (327)
                         ..||++.+..
T Consensus       249 ~~~~~GT~F~~~~  261 (369)
T COG0263         249 EGEAVGTLFEPQA  261 (369)
T ss_pred             hCCCCccEEecCC
Confidence               4699998553

>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional

Probab=99.83  E-value=1e-19  Score=169.27  Aligned_cols=169  Identities=14%  Similarity=0.199  Sum_probs=133.7

Q ss_pred             hhHHHH-hhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCC------------------CC-CC-CCCCchHHHHH
Q 020388           33 ESFTDF-VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT------------------SS-NQ-VDPDFSESEKR   91 (327)
Q Consensus        33 ~~~~d~-v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~------------------~~-~~-~~~~~~~~~~~   91 (327)
                      ++..+. ..++| .++..++ +.|+++|++++++++.++.+++..                  .+ |+ ..++.    +.
T Consensus        68 ~~~l~~~~~a~~-~ln~~lv-~~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~----~~  141 (268)
T PRK14058         68 RETLEVFIMAMA-LINKQLV-ERLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNT----DL  141 (268)
T ss_pred             HHHHHHHHHHHH-HHHHHHH-HHHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECH----HH
Confidence            344444 45788 7777775 599999999999999987554211                  11 11 23455    78


Q ss_pred             HHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHH
Q 020388           92 LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ  171 (327)
Q Consensus        92 i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~  171 (327)
                      ++.+++  .+.|||++|+ +.+..|+.+++   ++|++|+.+|.+|+|++++|||||||||++||.   +++++++++++
T Consensus       142 i~~ll~--~g~iPVi~~~-~~~~~g~~~~i---~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~  212 (268)
T PRK14058        142 LKLLLK--AGYLPVVAPP-ALSEEGEPLNV---DGDRAAAAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPE  212 (268)
T ss_pred             HHHHHH--CCCEEEEeCc-eECCCCcEEec---CHHHHHHHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHH
Confidence            888998  8899999997 66677887765   589999999999999999999999999999984   47899999999


Q ss_pred             HHHHHHhcCCCcccHh--hHHHHHhCCC-CEEEeecCCCC-------CCceEEeC
Q 020388          172 EAWEMSYFGANVLHPR--TIIPVMRYDI-PIVIRNIFNLS-------VPGIMICR  216 (327)
Q Consensus       172 ea~~l~~~g~~v~~p~--a~~~a~~~~I-~v~I~n~~~~e-------~~GT~I~~  216 (327)
                      |+.++.....++|.||  ++..+.++|+ +++|.++..|+       ..||+|.+
T Consensus       213 e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~GT~I~~  267 (268)
T PRK14058        213 EAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGEGTVIVN  267 (268)
T ss_pred             HHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCCceEEec
Confidence            9999988788999996  6777778899 78998886553       24888853

>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis

Probab=99.81  E-value=2.2e-19  Score=167.91  Aligned_cols=151  Identities=15%  Similarity=0.200  Sum_probs=123.0

Q ss_pred             cHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCC---------------CCCCchHHHHHHHHHhhcCCCceEEec
Q 020388           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ---------------VDPDFSESEKRLEKWFSQSPSNTIIAT  107 (327)
Q Consensus        43 GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~i~~~l~~~~~~vpVv~  107 (327)
                      |+ ++..+ ++.|++.|++++++++.+..++++++++.               ..++.    +.++.+++  .+.|||++
T Consensus        93 g~-ln~~l-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~----~~i~~ll~--~g~IPVi~  164 (279)
T cd04250          93 GK-VNKEI-VSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNP----ELLETLLE--AGYIPVIA  164 (279)
T ss_pred             Cc-hHHHH-HHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcH----HHHHHHHH--CCCeEEEc
Confidence            74 56655 99999999999999999876665444331               12334    78888888  78999999


Q ss_pred             CceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhc--CCCccc
Q 020388          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF--GANVLH  185 (327)
Q Consensus       108 Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~--g~~v~~  185 (327)
                      | ++.++.|++++++   +|.+|+.+|.+|+|+++++||||||||++||.   .++++++++++|+.+++..  ..++|.
T Consensus       165 ~-~~~~~~g~~~~~~---~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~  237 (279)
T cd04250         165 P-VGVGEDGETYNIN---ADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMI  237 (279)
T ss_pred             C-CccCCCCcEEEeC---HHHHHHHHHHHhCCCEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchH
Confidence            9 5888888888774   89999999999999999999999999999984   3789999999999999853  468898


Q ss_pred             Hh--hHHHHHhCCCC-EEEeecCCCC
Q 020388          186 PR--TIIPVMRYDIP-IVIRNIFNLS  208 (327)
Q Consensus       186 p~--a~~~a~~~~I~-v~I~n~~~~e  208 (327)
                      ++  ++..+.+.|++ ++|.++..|+
T Consensus       238 ~Kl~~a~~a~~~g~~~v~I~~g~~~~  263 (279)
T cd04250         238 PKVEACIEALEGGVKAAHIIDGRVPH  263 (279)
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCCCCc
Confidence            85  66667778886 9998876553

In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A

>TIGR00761 argB acetylglutamate kinase

Probab=99.80  E-value=4e-19  Score=161.67  Aligned_cols=141  Identities=16%  Similarity=0.242  Sum_probs=114.6

Q ss_pred             cHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCC-----C----CCCCchHHHHHHHHHhhcCCCceEEecCceecC
Q 020388           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-----Q----VDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (327)
Q Consensus        43 GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~-----~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~  113 (327)
                      ++.++..+ .+.|+++|++++++++.+..+++..+++     +    ..++.    +.++++++  .+.|||++|+ +.+
T Consensus        75 ~g~~~~~i-~~~L~~~G~~a~~l~~~~~~~it~~~~~~~~~~~~g~i~~i~~----~~i~~~l~--~g~IPVi~~~-~~~  146 (231)
T TIGR00761        75 IGQVNKEL-VALLNKHGINAIGLTGGDGQLFTARSLDKEDLGYVGEIKKVNK----ALLEALLK--AGYIPVISSL-ALT  146 (231)
T ss_pred             hcchHHHH-HHHHHhCCCCcccccCCCCCEEEEEECCCccCCcccceEEEcH----HHHHHHHH--CCCeEEECCC-ccC
Confidence            44566555 5699999999999999987454432221     1    22344    78888998  7899999995 888


Q ss_pred             CCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--CCcccHh--hH
Q 020388          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--TI  189 (327)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~~v~~p~--a~  189 (327)
                      ..|++++++   +|++|+.+|.+|+|++++|||||||||++||+     +++++++++|+.+++..|  .++|.||  ++
T Consensus       147 ~~g~~~~l~---sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a  218 (231)
T TIGR00761       147 AEGQALNVN---ADTAAGALAAALGAEKLVLLTDVPGILNGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAA  218 (231)
T ss_pred             CCCcEEEeC---HHHHHHHHHHHcCCCEEEEEECCCCeecCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHH
Confidence            889998884   89999999999999999999999999999874     699999999999999876  6889996  67


Q ss_pred             HHHHhCCCCE
Q 020388          190 IPVMRYDIPI  199 (327)
Q Consensus       190 ~~a~~~~I~v  199 (327)
                      ..|.++|++-
T Consensus       219 ~~a~~~gv~~  228 (231)
T TIGR00761       219 LEALRGGVKS  228 (231)
T ss_pred             HHHHHcCCCE
Confidence            7777788874

This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.

>PRK00942 acetylglutamate kinase; Provisional

Probab=99.79  E-value=1.3e-18  Score=162.97  Aligned_cols=160  Identities=19%  Similarity=0.220  Sum_probs=126.0

Q ss_pred             HhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCC---------CC-CCCCchHHHHHHHHHhhcCCCceEEec
Q 020388           38 FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS---------NQ-VDPDFSESEKRLEKWFSQSPSNTIIAT  107 (327)
Q Consensus        38 ~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~---------~~-~~~~~~~~~~~i~~~l~~~~~~vpVv~  107 (327)
                      .+++ | .++. .+.+.|+++|+++.++++.+..++++.++         |. ..++.    +.++.+++  .|.|||++
T Consensus        98 ~a~~-G-~l~~-~i~~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~----~~l~~ll~--~g~vpVv~  168 (283)
T PRK00942         98 MVLA-G-KVNK-ELVSLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNP----ALLEALLE--AGYIPVIS  168 (283)
T ss_pred             HHHc-C-chHH-HHHHHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECH----HHHHHHHH--CCCEEEEc
Confidence            3344 7 4554 45699999999999999998766665333         11 22344    78888888  88999999


Q ss_pred             CceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--CCccc
Q 020388          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLH  185 (327)
Q Consensus       108 Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~~v~~  185 (327)
                      + ++.+++|++++++   +|++|+.+|.+|+|++++|||||||||++      +++++++++++|+.+++..+  .++|.
T Consensus       169 ~-~~~~~~g~~~~l~---~D~~A~~lA~~l~A~~li~~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~  238 (283)
T PRK00942        169 P-IGVGEDGETYNIN---ADTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMI  238 (283)
T ss_pred             C-cEECCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchH
Confidence            7 5889889988874   89999999999999999999999999986      37899999999999998764  47888


Q ss_pred             Hh--hHHHHHhCCC-CEEEeecCCC----------CCCceEEeC
Q 020388          186 PR--TIIPVMRYDI-PIVIRNIFNL----------SVPGIMICR  216 (327)
Q Consensus       186 p~--a~~~a~~~~I-~v~I~n~~~~----------e~~GT~I~~  216 (327)
                      |+  ++..+.++|+ +++|.++..|          +..||.|.+
T Consensus       239 ~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~  282 (283)
T PRK00942        239 PKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP  282 (283)
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEec
Confidence            85  5666667887 5999886543          346888864

>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis

Probab=99.79  E-value=9.7e-19  Score=161.22  Aligned_cols=156  Identities=17%  Similarity=0.193  Sum_probs=121.0

Q ss_pred             hHHHHhhh-hcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCC-------C-CCCCchHHHHHHHHHhhcCCCceE
Q 020388           34 SFTDFVVG-HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------Q-VDPDFSESEKRLEKWFSQSPSNTI  104 (327)
Q Consensus        34 ~~~d~v~s-~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~-------~-~~~~~~~~~~~i~~~l~~~~~~vp  104 (327)
                      ...+.+.. .++.++..+++..+ ++|++++++++.+..+++..+++       + ..++.    +.++.+++  .+.||
T Consensus        67 ~~l~~~~~~~~~~~n~~lv~~l~-~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~G~v~~i~~----~~l~~ll~--~g~ip  139 (252)
T cd04249          67 EQIPYITGALAGTANKQLMAQAI-KAGLKPVGLSLADGGMTAVTQLDPELGAVGKATANDP----SLLNDLLK--AGFLP  139 (252)
T ss_pred             HHHHHHHHHHcCcccHHHHHHHH-hCCCCceeeeccCCCEEEEEEcCCCCCcccceEEEcH----HHHHHHHH--CCCEE
Confidence            34444433 36677777766665 89999999999987666543332       1 23444    78888888  88999


Q ss_pred             EecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--CC
Q 020388          105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--AN  182 (327)
Q Consensus       105 Vv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~~  182 (327)
                      |++| ++.++.|++++++   +|++|+.+|.+|+|+ +++||||||||+.||      +++++++++|+.++...|  .+
T Consensus       140 Vi~~-~g~~~~g~~~~~~---~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~g  208 (252)
T cd04249         140 IISS-IGADDQGQLMNVN---ADQAATAIAQLLNAD-LVLLSDVSGVLDADK------QLISELNAKQAAELIEQGVITD  208 (252)
T ss_pred             EECC-CEECCCCCEeeec---HHHHHHHHHHHcCCC-EEEEeCCcccCCCCC------cCccccCHHHHHHHHhcCCCcC
Confidence            9998 4889899998885   799999999999999 689999999998765      688999999999998655  36


Q ss_pred             cccHh---hHHHHHhCCCCEEEeecCCC
Q 020388          183 VLHPR---TIIPVMRYDIPIVIRNIFNL  207 (327)
Q Consensus       183 v~~p~---a~~~a~~~~I~v~I~n~~~~  207 (327)
                      +|.++   |++.+.+.+++++|.++..|
T Consensus       209 Gm~~kl~~a~~~~~~~~~~v~I~~g~~~  236 (252)
T cd04249         209 GMIVKVNAALDAAQSLRRGIDIASWQYP  236 (252)
T ss_pred             CcHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            67664   66677777789999987654

There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).

>PTZ00489 glutamate 5-kinase; Provisional

Probab=99.79  E-value=5.5e-18  Score=156.83  Aligned_cols=170  Identities=18%  Similarity=0.211  Sum_probs=128.2

Q ss_pred             hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecC
Q 020388           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (327)
Q Consensus        34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~  113 (327)
                      ..++.+.++|+.....++...|.++|+++..     +.++.. .+. ....+....+.++++++  .+.|||++|.-. .
T Consensus        70 ~~~qa~aaiGq~~L~~~y~~~f~~~~~~~aq-----iLlt~~-d~~-~~~~~~n~~~~l~~lL~--~g~VPIinend~-~  139 (264)
T PTZ00489         70 PNKQALASMGQPLLMHMYYTELQKHGILCAQ-----MLLAAY-DLD-SRKRTINAHNTIEVLIS--HKVIPIINENDA-T  139 (264)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHhCCCeEEE-----eeeecc-ccc-cchhhHHHHHHHHHHHH--CCCEEEECCCCC-c
Confidence            3567788899988899999999999998743     333222 111 12234556788899998  899999988411 1


Q ss_pred             CCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeE---EeecCHHHHHHHH----hcCCCcccH
Q 020388          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI---LRTLSYQEAWEMS----YFGANVLHP  186 (327)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~---i~~is~~ea~~l~----~~g~~v~~p  186 (327)
                      ..++..   +|++|.+|+++|..++|+.++++|||||||++||+.+|+|++   ++++++++.....    ..|.++|.+
T Consensus       140 ~~~e~~---~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~  216 (264)
T PTZ00489        140 ALHELV---FGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVT  216 (264)
T ss_pred             ccceeE---eCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHH
Confidence            112322   357899999999999999999999999999999999999997   7788887664332    256789988


Q ss_pred             h--hHHHHHhCCCCEEEeecCCCC-----------CCceEEeC
Q 020388          187 R--TIIPVMRYDIPIVIRNIFNLS-----------VPGIMICR  216 (327)
Q Consensus       187 ~--a~~~a~~~~I~v~I~n~~~~e-----------~~GT~I~~  216 (327)
                      |  |+..|.++|++++|.++..|+           ..||+|.+
T Consensus       217 Kl~aa~~a~~~Gi~v~I~~g~~~~~i~~~l~g~~~~~GT~~~~  259 (264)
T PTZ00489        217 KLQAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLFYP  259 (264)
T ss_pred             HHHHHHHHHHCCCCEEEEeCCCchHHHHHHcCCCCCCceEEee
Confidence            5  889999999999999875432           25888864

>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like

Probab=99.77  E-value=2.7e-18  Score=158.59  Aligned_cols=147  Identities=16%  Similarity=0.213  Sum_probs=118.3

Q ss_pred             cHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCC----------CC-CCCCchHHHHHHHHHhhcCCCceEEecCcee
Q 020388           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS----------NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (327)
Q Consensus        43 GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~----------~~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~  111 (327)
                      | +++..+ ++.|+++|++++++++.+..++++.++          |. ..++.    +.++.+++  .+.|||++| ++
T Consensus        77 g-~ln~~i-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~----~~l~~ll~--~g~ipVv~~-~~  147 (256)
T cd04238          77 G-KVNKEL-VSLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNP----ELLETLLE--AGYIPVIAP-IA  147 (256)
T ss_pred             C-chHHHH-HHHHHhCCCCCCCcccccCCEEEEEECCCCCCCcccccceEEECH----HHHHHHHH--CCCEEEECC-cE
Confidence            7 555555 999999999999999999766654332          22 23445    78888888  889999999 58


Q ss_pred             cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh--cCCCcccHh--
Q 020388          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--FGANVLHPR--  187 (327)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~--~g~~v~~p~--  187 (327)
                      .++.|++++++   +|++|+++|.+|+|++++|||||+|||++      +++++++++++|+.++..  ...++|.|+  
T Consensus       148 ~~~~g~~~~~~---~D~~A~~lA~~l~a~~li~ltdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~  218 (256)
T cd04238         148 VDEDGETYNVN---ADTAAGAIAAALKAEKLILLTDVPGVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVE  218 (256)
T ss_pred             ECCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEeCCccccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHH
Confidence            88889988874   89999999999999999999999999987      268999999999999875  335788885  


Q ss_pred             hHHHHHhCCC-CEEEeecCCC
Q 020388          188 TIIPVMRYDI-PIVIRNIFNL  207 (327)
Q Consensus       188 a~~~a~~~~I-~v~I~n~~~~  207 (327)
                      ++..+.+.|+ +++|.++..|
T Consensus       219 ~a~~~~~~g~~~v~I~~g~~~  239 (256)
T cd04238         219 AALEALEGGVRKVHIIDGRVP  239 (256)
T ss_pred             HHHHHHHhCCCEEEEeCCCCC
Confidence            5566666776 5999987644

Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis

Probab=99.77  E-value=7.6e-18  Score=157.66  Aligned_cols=170  Identities=17%  Similarity=0.196  Sum_probs=128.3

Q ss_pred             hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecC-ceec
Q 020388           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG-FIAS  112 (327)
Q Consensus        34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~G-fi~~  112 (327)
                      ..+..+.+.|+.....++...|.++|+++     .+++++. +.+.+.. .+....+.++.+++  .+.|||++| +...
T Consensus        92 ~~~qa~aa~gq~~L~~~y~~~f~~~~~~~-----~q~llt~-~d~~~~~-~~~~~~~~l~~lL~--~g~iPVi~~nD~v~  162 (284)
T cd04256          92 LDGRACAAVGQSGLMALYEAMFTQYGITV-----AQVLVTK-PDFYDEQ-TRRNLNGTLEELLR--LNIIPIINTNDAVS  162 (284)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHcCCcH-----HHeeeec-cccccHH-HHHHHHHHHHHHHH--CCCEEEEeCCCccc
Confidence            45678999999999999999999999876     6665543 3343211 12244567788887  889999996 3222


Q ss_pred             C-----CCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh-----cCCC
Q 020388          113 T-----PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY-----FGAN  182 (327)
Q Consensus       113 ~-----~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~-----~g~~  182 (327)
                      +     ++|+.. ...+++|++|+++|..++|+.++++|||||||++||+ .|+++++++++..+..++..     .|.+
T Consensus       163 ~~~~~~~~~~~~-~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtG  240 (284)
T cd04256         163 PPPEPDEDLQGV-ISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTG  240 (284)
T ss_pred             cccccccccccc-ccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccC
Confidence            2     112221 1235789999999999999999999999999999997 68999999999877766532     4578


Q ss_pred             cccHh--hHHHHHhCCCCEEEeecCCC---------CCCceEE
Q 020388          183 VLHPR--TIIPVMRYDIPIVIRNIFNL---------SVPGIMI  214 (327)
Q Consensus       183 v~~p~--a~~~a~~~~I~v~I~n~~~~---------e~~GT~I  214 (327)
                      +|.||  |+..|.++|++++|.++..|         +..||+|
T Consensus       241 GM~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~  283 (284)
T cd04256         241 GMEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFF  283 (284)
T ss_pred             CcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEe
Confidence            99995  88889999999999987654         3457776

G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.

>PLN02512 acetylglutamate kinase

Probab=99.76  E-value=1.5e-17  Score=157.63  Aligned_cols=155  Identities=16%  Similarity=0.179  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHcCCceeEEcccceeeccCCCCC---------C-CCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCC
Q 020388           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN---------Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI  117 (327)
Q Consensus        48 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~---------~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~  117 (327)
                      ...+++.|+++|++++++++.+..+++..+++         + ..++.    +.++.+++  .+.|||++|+ +.++.|+
T Consensus       129 n~~lv~~L~~~Gv~av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~----~~i~~lL~--~g~IPVi~~~-~~d~~g~  201 (309)
T PLN02512        129 NKSLVSLINKAGGTAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDP----TVLRPLVD--DGHIPVIATV-AADEDGQ  201 (309)
T ss_pred             HHHHHHHHHHcCCCeEEeehhhCCEEEEEEcCcCccccccceeeecCH----HHHHHHHh--CCCEEEEeCc-eECCCCC
Confidence            55678999999999999999886444433221         1 23455    78888888  8899999996 8888888


Q ss_pred             eeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhc--CCCcccHh--hHHHHH
Q 020388          118 PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF--GANVLHPR--TIIPVM  193 (327)
Q Consensus       118 ~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~--g~~v~~p~--a~~~a~  193 (327)
                      ..++   ++|.+|+.+|.+|+|++++|||||||||++||   ++++++++++++|+.++...  ..++|.||  ++..+.
T Consensus       202 ~~~i---~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~  275 (309)
T PLN02512        202 AYNI---NADTAAGEIAAALGAEKLILLTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSL  275 (309)
T ss_pred             Eecc---CHHHHHHHHHHHcCCCEEEEEeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            8776   48999999999999999999999999999864   34789999999999998754  36889996  555666


Q ss_pred             hCCCC-EEEeecCCC----------CCCceEEe
Q 020388          194 RYDIP-IVIRNIFNL----------SVPGIMIC  215 (327)
Q Consensus       194 ~~~I~-v~I~n~~~~----------e~~GT~I~  215 (327)
                      +.|++ ++|.++..|          +..||.|.
T Consensus       276 ~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~  308 (309)
T PLN02512        276 AQGVKTAHIIDGRVPHSLLLEILTDEGAGTMIT  308 (309)
T ss_pred             HcCCCEEEEecCCCCChHHHHHhcCCCCeeEEe
Confidence            78996 888886543          23477774

>CHL00202 argB acetylglutamate kinase; Provisional

Probab=99.75  E-value=1.6e-17  Score=155.64  Aligned_cols=159  Identities=16%  Similarity=0.208  Sum_probs=125.4

Q ss_pred             hcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCC-----CC---C-CCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS-----SN---Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (327)
Q Consensus        42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~-----~~---~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~  112 (327)
                      .|+.  ...+.+.|++.|++++++++.+..+++..+     ++   . ..++.    +.++.+++  .+.|||++|+ +.
T Consensus       101 ~g~l--n~~lv~~L~~~Gv~av~l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~----~~i~~ll~--~g~iPVi~~~-~~  171 (284)
T CHL00202        101 AGKV--NKDLVGSINANGGKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDP----QLIDMLLE--KNYIPVIASV-AA  171 (284)
T ss_pred             hhHH--HHHHHHHHHhCCCCeeeeeeccCCEEEEEeCCCcccccceeEEecCH----HHHHHHHH--CCCEEEECCC-cc
Confidence            3665  777899999999999999999876554221     12   1 24555    88898998  8899999995 88


Q ss_pred             CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--CCcccHh--h
Q 020388          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--T  188 (327)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~~v~~p~--a  188 (327)
                      +..|++++++   +|++|+.+|.+|+|++++|||||||||+.+ . .| .+++++++++|+.++...|  .++|.||  +
T Consensus       172 ~~~g~~~ni~---~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~-~-d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~a  245 (284)
T CHL00202        172 DHDGQTYNIN---ADVVAGEIAAKLNAEKLILLTDTPGILADI-N-DP-NSLISTLNIKEARNLASTGIISGGMIPKVNC  245 (284)
T ss_pred             CCCCcEEecC---HHHHHHHHHHHhCCCEEEEEeCChhhcCCC-C-CC-CCccccccHHHHHHHHhcCCCCCCHHHHHHH
Confidence            8889888774   799999999999999999999999999842 1 12 2799999999999998764  5789996  6


Q ss_pred             HHHHHhCCCC-EEEeecCCCC----------CCceEEe
Q 020388          189 IIPVMRYDIP-IVIRNIFNLS----------VPGIMIC  215 (327)
Q Consensus       189 ~~~a~~~~I~-v~I~n~~~~e----------~~GT~I~  215 (327)
                      +..|.++|++ ++|.++..|.          ..||.|.
T Consensus       246 a~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~  283 (284)
T CHL00202        246 CIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV  283 (284)
T ss_pred             HHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence            6677788987 7888876543          3588774

>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC)

Probab=99.75  E-value=1.1e-17  Score=154.77  Aligned_cols=158  Identities=14%  Similarity=0.184  Sum_probs=123.2

Q ss_pred             hhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCC-------------------CC-CCCCchHHHHHH
Q 020388           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS-------------------NQ-VDPDFSESEKRL   92 (327)
Q Consensus        33 ~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~-------------------~~-~~~~~~~~~~~i   92 (327)
                      ++..+.+....+.++..+ .+.|+++|++++++++.+..+++.+..                   |. ..++.    +.+
T Consensus        64 ~~~l~~~~~a~~~ln~~i-v~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~----~~i  138 (257)
T cd04251          64 KETLEVFVMVMGLINKKI-VARLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNS----DLI  138 (257)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhCCCCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcH----HHH
Confidence            444455554447777775 559999999999999988654432111                   11 23444    888


Q ss_pred             HHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHH
Q 020388           93 EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE  172 (327)
Q Consensus        93 ~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~e  172 (327)
                      +.+++  .+.|||++++ +.+.+|+++++   ++|++|+.+|.+|+|++++|||||||||++       ++++++++++|
T Consensus       139 ~~ll~--~g~vpVi~~~-~~~~~G~~~~i---~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e  205 (257)
T cd04251         139 EALLD--AGYLPVVSPV-AYSEEGEPLNV---DGDRAAAAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSD  205 (257)
T ss_pred             HHHHh--CCCeEEEeCc-EECCCCcEEec---CHHHHHHHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHH
Confidence            98998  8899999986 66788888887   489999999999999999999999999963       68999999999


Q ss_pred             HHHHHhcCCCcccHh--hHHHHHhCCCC-EEEeecCCCC
Q 020388          173 AWEMSYFGANVLHPR--TIIPVMRYDIP-IVIRNIFNLS  208 (327)
Q Consensus       173 a~~l~~~g~~v~~p~--a~~~a~~~~I~-v~I~n~~~~e  208 (327)
                      +.++...-.++|.||  ++..+.++|++ ++|.++..|+
T Consensus       206 ~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~~  244 (257)
T cd04251         206 AESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARADS  244 (257)
T ss_pred             HHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCcc
Confidence            999986667889885  77777788884 7888776553

This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).

>PLN02418 delta-1-pyrroline-5-carboxylate synthase

Probab=99.75  E-value=1.4e-17  Score=173.42  Aligned_cols=169  Identities=14%  Similarity=0.191  Sum_probs=126.1

Q ss_pred             HHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecC-CC
Q 020388           37 DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST-PD  115 (327)
Q Consensus        37 d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~-~~  115 (327)
                      ..++|+||.+++.++..+|+++|+++     .++++ +++.+++... +....+.|+.+++  .+.|||++|.-..+ ..
T Consensus        94 qa~aa~Gq~~l~~~~~~~f~~~g~~~-----~qill-T~~~~~~~~~-~~~~~~~l~~ll~--~g~iPVv~~nd~v~~~~  164 (718)
T PLN02418         94 KACAAVGQSELMALYDTLFSQLDVTA-----SQLLV-TDSDFRDPDF-RKQLSETVESLLD--LRVIPIFNENDAVSTRR  164 (718)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCCeE-----EEEEe-cHhHhcchhH-hHhHHHHHHHHHH--CCCEEEEcCCCCccccc
Confidence            38899999999999999999999954     55544 4344432221 2345577888887  78999998742222 11


Q ss_pred             CC----eeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHH-HH-----hcCCCccc
Q 020388          116 NI----PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE-MS-----YFGANVLH  185 (327)
Q Consensus       116 g~----~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~-l~-----~~g~~v~~  185 (327)
                      +.    ...  .+++|++|+++|.+++|+.+++||||||||++||+ .++++++++++..+... +.     ..++++|.
T Consensus       165 ~~~~~~~~~--~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~  241 (718)
T PLN02418        165 APYEDSSGI--FWDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMT  241 (718)
T ss_pred             cccccccCe--ecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcH
Confidence            10    011  24689999999999999999999999999999998 58999999997654332 22     23578999


Q ss_pred             Hh--hHHHHHhCCCCEEEeecCCC---------CCCceEEeCC
Q 020388          186 PR--TIIPVMRYDIPIVIRNIFNL---------SVPGIMICRP  217 (327)
Q Consensus       186 p~--a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~~~  217 (327)
                      ||  |+..|.++|++++|.++..|         +..||+|.+.
T Consensus       242 ~Kl~Aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  284 (718)
T PLN02418        242 AKVKAAVNAASAGIPVVITSGYALDNIRKVLRGERVGTLFHQD  284 (718)
T ss_pred             HHHHHHHHHHHCCCcEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence            94  88899999999999997644         3469999653

>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

Probab=99.73  E-value=1.8e-16  Score=146.77  Aligned_cols=186  Identities=15%  Similarity=0.192  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHhhhcCCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEc------ccc-eeeccC--CCCCCCC-
Q 020388           13 YEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD------TRE-VLIVNP--TSSNQVD-   82 (327)
Q Consensus        13 ~~~i~~~~~~l~~~~~~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~------~~~-~~~~~~--~~~~~~~-   82 (327)
                      .+.++...+.|.++.++      .+.++.+|.-..++....+....|++....+      ... .++..+  ..++... 
T Consensus        47 ~~~i~~la~~i~~~~~~------~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln~lv~~~~l~~~g~~~i  120 (262)
T cd04255          47 AEAVLPLVEEIVALRPE------HKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQNAEMLATLLAKHGGSKV  120 (262)
T ss_pred             HHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            46788888888877541      2445555554445432233334555443332      111 001100  0112111 


Q ss_pred             --CCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCc------chHHHHHHHHHhCCceEEEeeccCccccC
Q 020388           83 --PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG------SDFSAAIMGALLRAHQVTIWTDVDGVYSA  154 (327)
Q Consensus        83 --~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrgg------sD~~A~~lA~~l~A~~l~~~tDV~Gi~t~  154 (327)
                        .+.    ..++++++  .+.|||++|+.+.+   ..++.+|+|      +|++|+++|.+|+|+.+++||||||||++
T Consensus       121 ~~~~~----~~l~~lL~--~g~vPVi~g~~~~~---~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~  191 (262)
T cd04255         121 GHGDL----LQLPTFLK--AGRAPVISGMPPYG---LWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTA  191 (262)
T ss_pred             ccccH----HHHHHHHH--CCCeEEEeCCcCCC---eeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECC
Confidence              223    56888888  89999999986533   223444444      89999999999999999999999999999


Q ss_pred             CCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhC--CCCEEEeecCCCC---------CCceEE
Q 020388          155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRY--DIPIVIRNIFNLS---------VPGIMI  214 (327)
Q Consensus       155 dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~--~I~v~I~n~~~~e---------~~GT~I  214 (327)
                      ||+.+|+++++++++++|+.++.. +..+|...+...++.+  .++++|.++..|+         ..||+|
T Consensus       192 dP~~~~~a~~i~~i~~~~~~~~~~-~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~g~~~GT~i  261 (262)
T cd04255         192 DPKKNKKAEFIPEISAAELLKKDL-DDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTII  261 (262)
T ss_pred             CCCCCCCCeEccEeCHHHHHHHhc-CCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHcCCCCceEe
Confidence            999999999999999998877752 3335666666665533  3699999986553         357776

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>COG1608 Predicted archaeal kinase [General function prediction only]

Probab=99.65  E-value=1.3e-15  Score=136.24  Aligned_cols=154  Identities=18%  Similarity=0.195  Sum_probs=115.9

Q ss_pred             HHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcch
Q 020388           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD  127 (327)
Q Consensus        48 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD  127 (327)
                      +..++..|.+.|+++++..|..+. +.+++.     .+ ..-+.++.+++  .+.|||++|++..+.++.+..++ |  |
T Consensus        83 ~~~V~~~l~~~Gv~av~~~P~s~~-~~~gr~-----~~-~~l~~i~~~l~--~gfvPvl~GDVv~d~~~g~~IiS-G--D  150 (252)
T COG1608          83 NSIVVDALLDAGVRAVSVVPISFS-TFNGRI-----LY-TYLEAIKDALE--KGFVPVLYGDVVPDDDNGYEIIS-G--D  150 (252)
T ss_pred             HHHHHHHHHhcCCccccccCccee-ecCCce-----ee-chHHHHHHHHH--cCCEeeeecceEEcCCCceEEEe-c--c
Confidence            446689999999999998888886 333332     22 11277888888  89999999999998764444443 3  9


Q ss_pred             HHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC----CCcccHh--hHHHHHhCCCCEEE
Q 020388          128 FSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG----ANVLHPR--TIIPVMRYDIPIVI  201 (327)
Q Consensus       128 ~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g----~~v~~p~--a~~~a~~~~I~v~I  201 (327)
                      ..+.+||+.|++++++|+|||||||+.||.++|+++.++++....+  +...+    +++|.-|  ++..+.+++.++++
T Consensus       151 dIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~--~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi  228 (252)
T COG1608         151 DIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVA--LGGSGGTDVTGGIAKKLEALLEIARYGKEVYI  228 (252)
T ss_pred             HHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhh--hcCcCcccchhhHHHHHHHHHHHHhcCceEEE
Confidence            9999999999999999999999999999999999998887755422  22222    3566653  55555667788999


Q ss_pred             eecCCC---------CCCceEEe
Q 020388          202 RNIFNL---------SVPGIMIC  215 (327)
Q Consensus       202 ~n~~~~---------e~~GT~I~  215 (327)
                      +|++.|         +..||.|.
T Consensus       229 ~ng~~~~ni~~~l~G~~vGT~I~  251 (252)
T COG1608         229 FNGNKPENIYRALRGENVGTRID  251 (252)
T ss_pred             ECCCCHHHHHHHhcCCCCceEec
Confidence            998643         45688874

>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase

Probab=99.65  E-value=2.4e-15  Score=156.92  Aligned_cols=168  Identities=12%  Similarity=0.151  Sum_probs=123.5

Q ss_pred             hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecC
Q 020388           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (327)
Q Consensus        34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~  113 (327)
                      ..+..+.+.|+.....++...|.+.++.+     .+++++. +.+.+... +....+.++.+++  .|.|||++|.    
T Consensus        83 ~~~qa~aa~gq~~L~~~y~~~f~~~~i~~-----aQ~Llt~-~d~~~~~~-~~~~~~~l~~lL~--~g~iPVin~n----  149 (715)
T TIGR01092        83 LDGKACAAVGQSGLMALYETMFTQLDITA-----AQILVTD-LDFRDEQF-RRQLNETVHELLR--MNVVPVVNEN----  149 (715)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCee-----EEEEech-hhcccHHH-HHHHHHHHHHHHH--CCCEEEEcCC----
Confidence            45666778888877777788888887765     5665543 33322111 2334577888887  8899999751    


Q ss_pred             CCCCeeeecC---------CcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHH-HHH-----h
Q 020388          114 PDNIPTTLKR---------DGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAW-EMS-----Y  178 (327)
Q Consensus       114 ~~g~~~~lgr---------ggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~-~l~-----~  178 (327)
                        +.+++.++         +++|++|+++|.+|+|+.++++|||||||++||+ .|++++|++++..+.. ++.     .
T Consensus       150 --D~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~  226 (715)
T TIGR01092       150 --DAVSTRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSR  226 (715)
T ss_pred             --CcccccccccccccceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccc
Confidence              23333332         3579999999999999999999999999999996 6899999999875444 332     2


Q ss_pred             cCCCcccH--hhHHHHHhCCCCEEEeecCCC---------CCCceEEeCC
Q 020388          179 FGANVLHP--RTIIPVMRYDIPIVIRNIFNL---------SVPGIMICRP  217 (327)
Q Consensus       179 ~g~~v~~p--~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~~~  217 (327)
                      .++++|.+  .|+..|.++|++++|.++..+         +..||.|.+.
T Consensus       227 ~~tGGM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~  276 (715)
T TIGR01092       227 LGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKVGTLFHED  276 (715)
T ss_pred             cCCCCchHHHHHHHHHHHCCCeEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence            45688999  488899999999999987644         3469999643

This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.

>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]

Probab=99.65  E-value=3.8e-15  Score=136.61  Aligned_cols=150  Identities=17%  Similarity=0.198  Sum_probs=124.2

Q ss_pred             hcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCC--------CCC----CCCCchHHHHHHHHHhhcCCCceEEecCc
Q 020388           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS--------SNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGF  109 (327)
Q Consensus        42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~--------~~~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gf  109 (327)
                      .|+.  .+-+++.|+++|.+++++++.|-.+++..+        +|.    ..+|.    +.++.+++  .+.|||+++.
T Consensus        80 ~G~v--Nk~iva~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~----~~i~~ll~--~~~IpViapi  151 (265)
T COG0548          80 GGTV--NKEIVARLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNP----ELIERLLD--NGAIPVIAPI  151 (265)
T ss_pred             HHHH--HHHHHHHHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECH----HHHHHHHh--CCCceEEecc
Confidence            4565  778899999999999999998855553222        221    24555    78888888  8899999995


Q ss_pred             eecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--CCcccHh
Q 020388          110 IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR  187 (327)
Q Consensus       110 i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~~v~~p~  187 (327)
                       +.+++|++.++.   +|++|+.+|.+|+|++++++|||+||++.+|.    ..++++++.+|+.++...|  ..+|.|+
T Consensus       152 -a~~~~G~~~Nvn---aD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~----~s~i~~~~~~~~~~li~~~~i~~GMi~K  223 (265)
T COG0548         152 -AVDEDGETLNVN---ADTAAGALAAALKAEKLILLTDVPGVLDDKGD----PSLISELDAEEAEELIEQGIITGGMIPK  223 (265)
T ss_pred             -eECCCCcEEeeC---HHHHHHHHHHHcCCCeEEEEeCCcccccCCCC----ceeeccCCHHHHHHHHhcCCccCccHHH
Confidence             889999999985   89999999999999999999999999998654    2689999999999999988  6899995


Q ss_pred             --hHHHHHhCCCC-EEEeecCCC
Q 020388          188 --TIIPVMRYDIP-IVIRNIFNL  207 (327)
Q Consensus       188 --a~~~a~~~~I~-v~I~n~~~~  207 (327)
                        ++..|.+.|++ ++|.++..+
T Consensus       224 v~~a~~A~~~Gv~~v~ii~g~~~  246 (265)
T COG0548         224 VEAALEALESGVRRVHIISGRVP  246 (265)
T ss_pred             HHHHHHHHHhCCCeEEEecCCCc
Confidence              77888889994 889887543

>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP

Probab=99.55  E-value=1.3e-13  Score=129.80  Aligned_cols=119  Identities=18%  Similarity=0.205  Sum_probs=91.2

Q ss_pred             HHHHHHhhcCCCceEEecCc----eecCCCCCeeee-cCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeE
Q 020388           90 KRLEKWFSQSPSNTIIATGF----IASTPDNIPTTL-KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gf----i~~~~~g~~~~l-grggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~  164 (327)
                      +.++.+++  .+.|||++|.    +.. .+|..... ...++|++|+++|..|+|+.++++|||||||+.+|  .|++++
T Consensus       172 ~~I~~Ll~--~g~IpI~~GggGiPv~~-~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~--~pda~~  246 (308)
T cd04235         172 EAIKTLVD--NGVIVIAAGGGGIPVVR-EGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFG--KPNQKA  246 (308)
T ss_pred             HHHHHHHH--CCCEEEEECCCccCEEE-cCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCC--CCCCeE
Confidence            56777887  8999999986    222 23432221 12456999999999999999999999999999654  478999


Q ss_pred             EeecCHHHHHHHHh---cCCCcccHh---hHHHHHhCCCCEEEeecC------CCCCCceEE
Q 020388          165 LRTLSYQEAWEMSY---FGANVLHPR---TIIPVMRYDIPIVIRNIF------NLSVPGIMI  214 (327)
Q Consensus       165 i~~is~~ea~~l~~---~g~~v~~p~---a~~~a~~~~I~v~I~n~~------~~e~~GT~I  214 (327)
                      +++++++|+.++..   +++++|.||   |++.+.+.+.+++|.+..      +.+ .||.|
T Consensus       247 i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~~~~i~~aL~G~-~GT~I  307 (308)
T cd04235         247 LEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITSLENAEAALEGK-AGTVI  307 (308)
T ss_pred             cCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECCHHHHHHHHCCC-CCeEE
Confidence            99999999999885   567899997   667777777888887643      223 58876

Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).

>PRK12353 putative amino acid kinase; Reviewed

Probab=99.55  E-value=1.1e-13  Score=131.25  Aligned_cols=121  Identities=21%  Similarity=0.214  Sum_probs=92.6

Q ss_pred             HHHHHHhhcCCCceEEecCc--eec-CCCCCeeee-cCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEE
Q 020388           90 KRLEKWFSQSPSNTIIATGF--IAS-TPDNIPTTL-KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gf--i~~-~~~g~~~~l-grggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i  165 (327)
                      +.++.+++  .+.|||++|+  ++. ++++.+.+. ..+++|.+|+++|.+|+|++++++|||||||++||  .|+++++
T Consensus       176 ~~i~~lL~--~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~--~~~a~~i  251 (314)
T PRK12353        176 EAIKTLVD--AGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFG--KPNQKKL  251 (314)
T ss_pred             HHHHHHHH--CCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCC--CCCCeEC
Confidence            77888888  8999999987  222 334433220 13568999999999999999999999999999766  3889999


Q ss_pred             eecCHHHHHHHHh---cCCCcccHh--hH-HHH-HhCCCCEEEeecC------CCCCCceEEe
Q 020388          166 RTLSYQEAWEMSY---FGANVLHPR--TI-IPV-MRYDIPIVIRNIF------NLSVPGIMIC  215 (327)
Q Consensus       166 ~~is~~ea~~l~~---~g~~v~~p~--a~-~~a-~~~~I~v~I~n~~------~~e~~GT~I~  215 (327)
                      ++++++|+.++..   .+.++|.||  ++ +.+ .+.|++++|.+..      +++ .||.|.
T Consensus       252 ~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~~~~i~~~l~g~-~GT~i~  313 (314)
T PRK12353        252 DEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITSLEKAKEALEGK-AGTVIV  313 (314)
T ss_pred             cCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECCchHHHHHhCCC-CCeEec
Confidence            9999999988874   456789995  44 455 4778999998742      233 688874

>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals

Probab=99.54  E-value=9e-14  Score=128.98  Aligned_cols=140  Identities=14%  Similarity=0.156  Sum_probs=113.7

Q ss_pred             HHHHHHHHHHcCCceeEEcccceeecc----C-CCCCC-CCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeee
Q 020388           48 AQMLAAVVRKNGIDCKWMDTREVLIVN----P-TSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTL  121 (327)
Q Consensus        48 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~----~-~~~~~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~l  121 (327)
                      ...++..|++.|++++++++.+.++..    + ...|+ ..+|.    +.|+.+++  .|.|||+++ ++.+..|++.++
T Consensus       100 n~~Lv~~L~~~G~~A~gl~g~~~~i~a~~~~d~g~vG~V~~Vd~----~~I~~lL~--~g~IPVisp-lg~~~~G~~~Ni  172 (271)
T cd04236         100 CKTLVEALQANSAAAHPLFSGESVLQAEEPEPGASKGPSVSVDT----ELLQWCLG--SGHIPLVCP-IGETSSGRSVSL  172 (271)
T ss_pred             HHHHHHHHHhCCCCeeeecCccceEEEEEcccCCccceEEEECH----HHHHHHHh--CCCeEEECC-ceECCCCCEEEE
Confidence            566789999999999999987533321    1 11233 35677    88999998  899999999 689999999998


Q ss_pred             cCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCH-HHHHHHHhcC--CCcc---cHh--hHHHHH
Q 020388          122 KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY-QEAWEMSYFG--ANVL---HPR--TIIPVM  193 (327)
Q Consensus       122 grggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~-~ea~~l~~~g--~~v~---~p~--a~~~a~  193 (327)
                      +   +|..|+.+|.+|+|++++|+||++|||+.      +.+++++++. +|+.+|...|  .++|   .|+  ++..+.
T Consensus       173 N---aD~~A~~lA~aL~A~KLIfltd~~GV~~~------~g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l  243 (271)
T cd04236         173 D---SSEVTTAIAKALQPIKVIFLNRSGGLRDQ------KHKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNAL  243 (271)
T ss_pred             C---HHHHHHHHHHHcCCCEEEEEeCCcceECC------CCCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhc
Confidence            5   89999999999999999999999999963      2578999995 9999999877  4778   563  666777


Q ss_pred             hCCCCEEEee
Q 020388          194 RYDIPIVIRN  203 (327)
Q Consensus       194 ~~~I~v~I~n  203 (327)
                      ..|++++|.+
T Consensus       244 ~~g~sv~I~~  253 (271)
T cd04236         244 PSMSSAVITS  253 (271)
T ss_pred             ccCCeEEEeC
Confidence            8899988876

Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).

>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP)

Probab=99.52  E-value=3e-13  Score=124.46  Aligned_cols=145  Identities=12%  Similarity=0.121  Sum_probs=107.8

Q ss_pred             hhcHHHHHHHHHHHHHHcCCceeEEcccceeec--cCCCCC---C-CCCCchHHHHHHHHHhhcCCCceEEecCceecCC
Q 020388           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV--NPTSSN---Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (327)
Q Consensus        41 s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~--~~~~~~---~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~  114 (327)
                      ++++.  ...+.+.|.++|++++++++..+...  +...++   . ..+|.    +.++.+++  .+.|||++|. +.+.
T Consensus        72 al~~v--n~~iv~~l~~~g~~a~~l~~~~~~a~~~~~~d~g~~G~v~~i~~----~~i~~~L~--~g~IPVi~p~-~~~~  142 (248)
T cd04252          72 VFLEE--NLKLVEALERNGARARPITSGVFEAEYLDKDKYGLVGKITGVNK----APIEAAIR--AGYLPILTSL-AETP  142 (248)
T ss_pred             HHHHH--HHHHHHHHHhCCCCcccccCceEEEEECcCccCCccCceeeECH----HHHHHHHH--CCCeEEECCc-eECC
Confidence            44543  55567889999999999998643211  011122   2 34666    88899998  8999999995 7788


Q ss_pred             CCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCH-HHHHHHHhcC--CCcccHh--hH
Q 020388          115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY-QEAWEMSYFG--ANVLHPR--TI  189 (327)
Q Consensus       115 ~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~-~ea~~l~~~g--~~v~~p~--a~  189 (327)
                      .|++.+++   +|..|+.+|.+|+|++++|+|||+|||+.      +.+++++++. +++.++...|  +++|.||  ++
T Consensus       143 ~g~~~nvn---aD~~A~~lA~aL~a~kli~ltdv~GV~~~------~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~  213 (248)
T cd04252         143 SGQLLNVN---ADVAAGELARVLEPLKIVFLNETGGLLDG------TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKEI  213 (248)
T ss_pred             CCCEEEEC---HHHHHHHHHHHcCCCeEEEEECCcccCCC------CCCcccccCHHHHHHHHHHcCCcCCchHHHHHHH
Confidence            88888875   79999999999999999999999999964      2578999986 5777777655  4789886  55


Q ss_pred             HHHHhC--CC-CEEEee
Q 020388          190 IPVMRY--DI-PIVIRN  203 (327)
Q Consensus       190 ~~a~~~--~I-~v~I~n  203 (327)
                      ..+.++  ++ .++|.+
T Consensus       214 ~~~~~~~~~~~~v~i~~  230 (248)
T cd04252         214 KELLDTLPRSSSVSITS  230 (248)
T ss_pred             HHHHHhCCCceEEEEEC
Confidence            555555  33 466665

The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th

>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway

Probab=99.52  E-value=6.5e-14  Score=102.84  Aligned_cols=66  Identities=24%  Similarity=0.372  Sum_probs=62.9

Q ss_pred             CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388          240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (327)
Q Consensus       240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~  306 (327)
                      .+++|+++|.+|. .|++.+++|++|++.||++.|++|++|+.+|||+|+++|.+++++.||+.|++
T Consensus         1 ~~a~VsvVG~gm~-~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~~~~~~av~~Lh~~f~~   66 (66)
T cd04915           1 RVAIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDYDNAIKALHAALVE   66 (66)
T ss_pred             CEEEEEEECCCCC-cchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEHHHHHHHHHHHHHHHhC
Confidence            3789999999995 89999999999999999999999999999999999999999999999999974

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas

>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]

Probab=99.50  E-value=1.6e-13  Score=121.95  Aligned_cols=175  Identities=15%  Similarity=0.197  Sum_probs=119.2

Q ss_pred             HHhhhcCCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCc
Q 020388           23 LSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSN  102 (327)
Q Consensus        23 l~~~~~~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~  102 (327)
                      .++.++++..-......++.|+-=...++-..|.++|+.+     .+++++.. .+-+ +-.+.....-|.+++.  .+.
T Consensus        76 ~r~~l~~~~~l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~i-----AQvLvT~~-Di~d-~~~r~Nl~~Ti~eLL~--m~v  146 (285)
T KOG1154|consen   76 MRQTLKPQSELAEKRACAAVGQSGLMALYETLFTQYGITI-----AQVLVTRN-DILD-EQQRKNLQNTISELLS--MNV  146 (285)
T ss_pred             HHHhhCCccchhhHHHHHHhCcchHHHHHHHHHHHhccch-----heeeecCc-chhh-HHHHHHHHHHHHHHHh--CCc
Confidence            4444544333345556788888666677788999999886     55555432 2210 0001122244566666  789


Q ss_pred             eEEecCceecCCCCCeeeecCCc---chHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHH-----
Q 020388          103 TIIATGFIASTPDNIPTTLKRDG---SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAW-----  174 (327)
Q Consensus       103 vpVv~Gfi~~~~~g~~~~lgrgg---sD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~-----  174 (327)
                      |||+.-.-+..    +.-+-+|+   +|.+|+.+|..++||.++++|||||+||..|.. ..++++++.+..+..     
T Consensus       147 iPIvNeNDavs----~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~-~~~~li~~~~~~~~~v~~tf  221 (285)
T KOG1154|consen  147 IPIVNENDAVS----PREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDA-DPSKLIHTFSPGDPQVSTTF  221 (285)
T ss_pred             eeeecCCCccC----CcccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCC-CcceeeeeeccCCCCCcccc
Confidence            99985421211    11133455   899999999999999999999999999965543 346888888766443     


Q ss_pred             -HHHhcCCCcccHh--hHHHHHhCCCCEEEeecCCCCCCc
Q 020388          175 -EMSYFGANVLHPR--TIIPVMRYDIPIVIRNIFNLSVPG  211 (327)
Q Consensus       175 -~l~~~g~~v~~p~--a~~~a~~~~I~v~I~n~~~~e~~G  211 (327)
                       +-+..|.++|..|  |+..|...|++++|.++..|+..+
T Consensus       222 G~~SkvGtGGM~tKv~AA~~A~~~Gv~viI~~g~~p~~I~  261 (285)
T KOG1154|consen  222 GSKSKVGTGGMETKVKAAVNALNAGVSVIITNGDAPENIT  261 (285)
T ss_pred             CccCccCcCcchhhHHHHHHHhcCCceEEEeCCCChHHHH
Confidence             3456788999985  899999999999999999887433

>TIGR00746 arcC carbamate kinase

Probab=99.49  E-value=9.7e-13  Score=124.34  Aligned_cols=200  Identities=15%  Similarity=0.154  Sum_probs=130.9

Q ss_pred             ccHHHHHHHHHHHHhhhcC---------------------C-----CChhHHHHhhhhcHHHHHHHHHHHHH----HcCC
Q 020388           11 LSYEFIRSTYNFLSNVDSG---------------------H-----ATESFTDFVVGHGELWSAQMLAAVVR----KNGI   60 (327)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~~---------------------~-----~~~~~~d~v~s~GE~~s~~l~~~~L~----~~Gi   60 (327)
                      .+.+.++.....|.++...                     +     .++.-.|.+.+.|+-+.+.+|...|+    ++|+
T Consensus        23 ~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~~~~~~~p~~~~~A~~qg~lg~~~~~~l~~~l~~~g~  102 (310)
T TIGR00746        23 AQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAADSEVPAMPLDVLGAMSQGMIGYMLQQALNNELPKRGM  102 (310)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhccccccccCCCCcchHHHHhhHHHHHHHHHHHHHHHHHhcCC
Confidence            3456777777777777741                     0     11122588889999888999998888    8887


Q ss_pred             ceeEEcc-cceeeccCC-CCCC-------------------------------------CCCCchH--HHHHHHHHhhcC
Q 020388           61 DCKWMDT-REVLIVNPT-SSNQ-------------------------------------VDPDFSE--SEKRLEKWFSQS   99 (327)
Q Consensus        61 ~a~~l~~-~~~~~~~~~-~~~~-------------------------------------~~~~~~~--~~~~i~~~l~~~   99 (327)
                      +...... .++.+..++ .|.+                                     +.+.+..  -.+.|+.+++  
T Consensus       103 ~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~~rrvv~sp~p~~iv~~~~I~~LL~--  180 (310)
T TIGR00746       103 EKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRGWRRVVPSPRPKDIVEAETIKTLVE--  180 (310)
T ss_pred             CccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCcceEeecCCCchhhccHHHHHHHHH--
Confidence            5532221 222222111 1111                                     0111100  1257788888  


Q ss_pred             CCceEEecCc--eec-CCCCCeeee-cCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHH
Q 020388          100 PSNTIIATGF--IAS-TPDNIPTTL-KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE  175 (327)
Q Consensus       100 ~~~vpVv~Gf--i~~-~~~g~~~~l-grggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~  175 (327)
                      .|.|+|.+|-  ++. +++|.+... -.+++|.+|+++|.+|+||.|+++|||||||++ | ..|+++++++++++|+.+
T Consensus       181 ~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~-~-~~p~a~~i~~it~~e~~~  258 (310)
T TIGR00746       181 NGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYIN-Y-GKPDEKALREVTVEELED  258 (310)
T ss_pred             CCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCC-C-CCCCCcCCcCcCHHHHHH
Confidence            7777666653  222 344443211 125689999999999999999999999999996 4 357899999999999998


Q ss_pred             HHh---cCCCcccHh---hHHHHHhCCCCEEEeecC------CCCCCceEEe
Q 020388          176 MSY---FGANVLHPR---TIIPVMRYDIPIVIRNIF------NLSVPGIMIC  215 (327)
Q Consensus       176 l~~---~g~~v~~p~---a~~~a~~~~I~v~I~n~~------~~e~~GT~I~  215 (327)
                      +..   +++++|.||   |++.+.+.+++++|.+..      +.+ .||+|.
T Consensus       259 ~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~~~~i~~~l~G~-~GT~I~  309 (310)
T TIGR00746       259 YYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITSLENAVEALEGK-AGTRVT  309 (310)
T ss_pred             HHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEechHHHHHHHCCC-CCcEEe
Confidence            874   556889885   446666667889988743      334 688874

The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.

>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=99.47  E-value=2.3e-13  Score=99.49  Aligned_cols=63  Identities=24%  Similarity=0.360  Sum_probs=60.6

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~  305 (327)
                      ++|+++|. +...+++++++|++|++.||+|.||+|++|+.++||+|+++|.+++++.||++|+
T Consensus         2 a~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~~~~~av~~Lh~~f~   64 (65)
T cd04918           2 SIISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEAEGCVQALHKSFF   64 (65)
T ss_pred             cEEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHh
Confidence            68999999 7778999999999999999999999999999999999999999999999999996

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=99.46  E-value=3.3e-13  Score=98.36  Aligned_cols=66  Identities=27%  Similarity=0.424  Sum_probs=63.5

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~  306 (327)
                      +++|+++|.++.+.|++.+++|+.|++.||+++|++|++|+.+++|++++++.+++++.||+.|++
T Consensus         1 ~~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~~~~~~~a~~~lh~~~~~   66 (66)
T cd04919           1 LAILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVIDEKDAVKALNIIHTNLLE   66 (66)
T ss_pred             CeEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHhC
Confidence            589999999999999999999999999999999999998999999999999999999999999974

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts

Probab=99.45  E-value=1.2e-12  Score=122.61  Aligned_cols=147  Identities=16%  Similarity=0.188  Sum_probs=110.6

Q ss_pred             hcHHHHHHHHHHHHHHcCCceeEEcccceeec-----cCC--------CC---CC-CCCCchHHHHHHHHHhhcCCCceE
Q 020388           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIV-----NPT--------SS---NQ-VDPDFSESEKRLEKWFSQSPSNTI  104 (327)
Q Consensus        42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~-----~~~--------~~---~~-~~~~~~~~~~~i~~~l~~~~~~vp  104 (327)
                      .|+.  ...+.+.|++ |++++++++..+...     ...        .+   |. ..++.    +.|+.+++  .+.||
T Consensus        94 ~g~v--~~~l~~~l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~----~~i~~lL~--~g~ip  164 (280)
T cd04237          94 AGAV--RLEIEALLSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDA----DAIRRQLD--QGSIV  164 (280)
T ss_pred             HHHH--HHHHHHHHHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcH----HHHHHHHH--CCCEE
Confidence            4666  5667777755 888876554322111     110        11   11 23455    88899998  88999


Q ss_pred             EecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC---C
Q 020388          105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG---A  181 (327)
Q Consensus       105 Vv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g---~  181 (327)
                      |+++ ++.+.+|+..+++   +|..|+.||.+|+|++++|+|||||||+.      +++++++++.+|+.++...|   .
T Consensus       165 v~~~-~g~~~~g~~lnvn---aD~~A~~LA~~L~a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~  234 (280)
T cd04237         165 LLSP-LGYSPTGEVFNLS---MEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLT  234 (280)
T ss_pred             EECC-ceECCCCCEEeeC---HHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCC
Confidence            9998 5888889988775   69999999999999999999999999963      36799999999999998765   4


Q ss_pred             CcccHh--hHHHHHhCCC-CEEEeecCCC
Q 020388          182 NVLHPR--TIIPVMRYDI-PIVIRNIFNL  207 (327)
Q Consensus       182 ~v~~p~--a~~~a~~~~I-~v~I~n~~~~  207 (327)
                      ++|.||  ++..+.+.|+ +++|.++..|
T Consensus       235 ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~  263 (280)
T cd04237         235 NDTARLLQAAIEACRGGVPRVHLISYAED  263 (280)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            789996  6666677899 5999887544

Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>PRK05279 N-acetylglutamate synthase; Validated

Probab=99.44  E-value=1.3e-12  Score=129.80  Aligned_cols=157  Identities=17%  Similarity=0.182  Sum_probs=116.8

Q ss_pred             hcHHHHHHHHHHHHHHcCCceeEEcccceeeccCC-------------CCCC----CCCCchHHHHHHHHHhhcCCCceE
Q 020388           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-------------SSNQ----VDPDFSESEKRLEKWFSQSPSNTI  104 (327)
Q Consensus        42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~-------------~~~~----~~~~~~~~~~~i~~~l~~~~~~vp  104 (327)
                      .|+.  ...+.+.|+ .|++++++.+..+...+..             .+|.    ..++.    +.++.+++  .|.||
T Consensus       101 ~g~v--~~~l~~~l~-~g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~----~~i~~ll~--~g~ip  171 (441)
T PRK05279        101 AGEL--RLDIEARLS-MGLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDA----EAIRRQLD--SGAIV  171 (441)
T ss_pred             HHHH--HHHHHHHHh-ccCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeH----HHHHHHHH--CCCeE
Confidence            4533  556677774 5999888766554332210             1121    22445    78888988  88999


Q ss_pred             EecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh---cC-
Q 020388          105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY---FG-  180 (327)
Q Consensus       105 Vv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~---~g-  180 (327)
                      |+++ ++.+.+|++.+++   +|.+|+.||.+|+|++++|+|||||||+.      +++++++++.+|+.++..   .| 
T Consensus       172 V~~~-i~~~~~g~~~ni~---~D~~a~~lA~~l~a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~  241 (441)
T PRK05279        172 LLSP-LGYSPTGESFNLT---MEEVATQVAIALKADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGD  241 (441)
T ss_pred             EECC-ceECCCCCEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCC
Confidence            9965 6888889888774   79999999999999999999999999953      368999999999988875   44 


Q ss_pred             -CCcccHh--hHHHHHhCCC-CEEEeecCCC----------CCCceEEeCC
Q 020388          181 -ANVLHPR--TIIPVMRYDI-PIVIRNIFNL----------SVPGIMICRP  217 (327)
Q Consensus       181 -~~v~~p~--a~~~a~~~~I-~v~I~n~~~~----------e~~GT~I~~~  217 (327)
                       .++|.||  ++..+.+.|+ +++|.++..|          +..||.|...
T Consensus       242 ~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~  292 (441)
T PRK05279        242 YNSGTARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVME  292 (441)
T ss_pred             CCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecC
Confidence             4789996  5556667899 5888887543          2469999865

>PRK12686 carbamate kinase; Reviewed

Probab=99.43  E-value=1.4e-12  Score=122.92  Aligned_cols=121  Identities=18%  Similarity=0.219  Sum_probs=91.7

Q ss_pred             HHHHHHhhcCCCceEEecCcee---cCCCCCeeeec-CCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEE
Q 020388           90 KRLEKWFSQSPSNTIIATGFIA---STPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gfi~---~~~~g~~~~lg-rggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i  165 (327)
                      +.|+.+++  .+.|||.+|.-|   .++++.+.... .+++|.+|++||.+|+|++++|+|||||||+ ||+ .|++++|
T Consensus       174 ~~I~~Ll~--~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~-~~~-~p~ak~I  249 (312)
T PRK12686        174 DTIRTLVD--GGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFI-NFN-KPNQQKL  249 (312)
T ss_pred             HHHHHHHH--CCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhcc-CCC-CCCCeEC
Confidence            67888888  899999988622   23455443331 4578999999999999999999999999999 465 4789999


Q ss_pred             eecCHHHHHHHHh---cCCCcccHh--hHHHHHh--CCCCEEEeecC------CCCCCceEEe
Q 020388          166 RTLSYQEAWEMSY---FGANVLHPR--TIIPVMR--YDIPIVIRNIF------NLSVPGIMIC  215 (327)
Q Consensus       166 ~~is~~ea~~l~~---~g~~v~~p~--a~~~a~~--~~I~v~I~n~~------~~e~~GT~I~  215 (327)
                      ++++.+|+.++..   +++++|.||  |+..+.+  .+.+++|.+..      +.+ .||+|.
T Consensus       250 ~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~~~~i~~aL~G~-~GT~I~  311 (312)
T PRK12686        250 DDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITSLEQAKEALAGN-AGTHIT  311 (312)
T ss_pred             CccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeCchHHHHHhCCC-CCeEEe
Confidence            9999999998874   446889996  5555443  35788887743      222 588874

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=99.42  E-value=8.1e-13  Score=96.04  Aligned_cols=65  Identities=31%  Similarity=0.556  Sum_probs=62.8

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~  305 (327)
                      +++|+++|.++.+.|++.+++|++|++.||+++|++|+.++.+++|++++++.++++++||+.|+
T Consensus         1 ~~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~   65 (66)
T cd04922           1 LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF   65 (66)
T ss_pred             CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999999998899999999999999999999999986

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=99.42  E-value=1.6e-12  Score=98.42  Aligned_cols=79  Identities=49%  Similarity=0.764  Sum_probs=75.9

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCCCCceeEEE
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFSAS  319 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~~~~~  319 (327)
                      +++|+++|.++.+.+++.+++|+.|++++|+++|++|++++.+++|++++++..++++.||+.|+.+++++.++|+.++
T Consensus         1 ~~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~~isf~v~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~   79 (80)
T cd04921           1 VALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEHSISFVVDESDADKALEALEEEFALEIKAGLIKPIEVE   79 (80)
T ss_pred             CEEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCcceEEEEEeHHHHHHHHHHHHHHHHhhhhhCcccceEee
Confidence            5899999999999999999999999999999999999988999999999999999999999999999999999999875

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=99.39  E-value=1.5e-12  Score=94.87  Aligned_cols=63  Identities=30%  Similarity=0.524  Sum_probs=59.9

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~  305 (327)
                      +++|+++|.+|...|++++|+|++|++.||++.++++  |+.+|||+|+++|.++++++||++|+
T Consensus         1 ~~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~--Se~~is~~v~~~~~~~av~~Lh~~f~   63 (64)
T cd04937           1 CAKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD--SHTTISCLVSEDDVKEAVNALHEAFE   63 (64)
T ss_pred             CeEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc--CccEEEEEEcHHHHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999998874  79999999999999999999999985

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase

Probab=99.37  E-value=8e-12  Score=123.71  Aligned_cols=157  Identities=13%  Similarity=0.104  Sum_probs=113.9

Q ss_pred             hcHHHHHHHHHHHHHHcCCceeE-----Ecccceeecc-------C-CCCCC----CCCCchHHHHHHHHHhhcCCCceE
Q 020388           42 HGELWSAQMLAAVVRKNGIDCKW-----MDTREVLIVN-------P-TSSNQ----VDPDFSESEKRLEKWFSQSPSNTI  104 (327)
Q Consensus        42 ~GE~~s~~l~~~~L~~~Gi~a~~-----l~~~~~~~~~-------~-~~~~~----~~~~~~~~~~~i~~~l~~~~~~vp  104 (327)
                      .|+.  .+-+.+.|++. +++.+     +++.+..++.       + ..+|.    ..++.    +.++.+++  .+.||
T Consensus        93 ~g~v--n~~l~~~l~~~-~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~----~~l~~ll~--~g~ip  163 (429)
T TIGR01890        93 AGTL--RLAIEARLSMS-LSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDT----EGIRRQLD--AGSIV  163 (429)
T ss_pred             hChH--HHHHHHHHHhc-CCcccccccCceEccceEEEEEECCCCcCccccccceEEEEcH----HHHHHHHH--CCCeE
Confidence            4555  56677888776 54433     3333322221       0 01222    34566    88899998  88999


Q ss_pred             EecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCc-
Q 020388          105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANV-  183 (327)
Q Consensus       105 Vv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v-  183 (327)
                      |+++ ++.+.+|+..+++   +|..|+.||.+|+|++++|+|||||||+.      +.+++++|+.+|+.++....... 
T Consensus       164 vi~p-i~~~~~g~~~nvn---aD~~A~~lA~al~a~kli~ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~  233 (429)
T TIGR01890       164 LLSP-LGHSPTGETFNLD---MEDVATSVAISLKADKLIYFTLSPGISDP------DGTLAAELSPQEVESLAERLGSET  233 (429)
T ss_pred             EECC-cccCCCCCEEEeC---HHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCC
Confidence            9998 5888889998885   79999999999999999999999999963      25799999999998887643334 


Q ss_pred             ccHh--hHHHHHhCCC-CEEEeecCCC----------CCCceEEeCC
Q 020388          184 LHPR--TIIPVMRYDI-PIVIRNIFNL----------SVPGIMICRP  217 (327)
Q Consensus       184 ~~p~--a~~~a~~~~I-~v~I~n~~~~----------e~~GT~I~~~  217 (327)
                      |.|+  ++..|.+.|+ +++|.++..|          +..||.|...
T Consensus       234 ~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d  280 (429)
T TIGR01890       234 TRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKE  280 (429)
T ss_pred             cHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEecc
Confidence            4775  6667778897 5899887533          3469999754

This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.

>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=99.37  E-value=2.6e-12  Score=93.48  Aligned_cols=64  Identities=38%  Similarity=0.613  Sum_probs=60.7

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~  306 (327)
                      +++|+++|.+|++.|++.+++|++|++  ++|.+++|++|+.+++|+|+++|.+++++.||++|+.
T Consensus         1 ~alIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~~~s~~~is~~V~~~~~~~a~~~Lh~~f~~   64 (64)
T cd04917           1 LALVALIGNDISETAGVEKRIFDALED--INVRMICYGASNHNLCFLVKEEDKDEVVQRLHSRLFE   64 (64)
T ss_pred             CeEEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEEecCccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence            589999999999999999999999975  8999999999999999999999999999999999973

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC)

Probab=99.36  E-value=2.1e-12  Score=93.86  Aligned_cols=63  Identities=21%  Similarity=0.318  Sum_probs=58.2

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~  306 (327)
                      |+|+++|.+|...|++.+++|++|++.  +|.+++|++|+.+|||+|+++|.++++++||++|++
T Consensus         1 a~VsvVG~g~~~~~gv~~~~~~~L~~~--~i~~i~~~~s~~~is~vv~~~d~~~av~~LH~~f~~   63 (63)
T cd04920           1 AAVSLVGRGIRSLLHKLGPALEVFGKK--PVHLVSQAANDLNLTFVVDEDQADGLCARLHFQLIE   63 (63)
T ss_pred             CEEEEECCCcccCccHHHHHHHHHhcC--CceEEEEeCCCCeEEEEEeHHHHHHHHHHHHHHHhC
Confidence            689999999999999999999999886  556678889999999999999999999999999974

This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed

Probab=99.36  E-value=1.8e-11  Score=115.36  Aligned_cols=121  Identities=20%  Similarity=0.175  Sum_probs=91.9

Q ss_pred             HHHHHHhhcCCCceEEecCce---ecCCCCCeeeec-CCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEE
Q 020388           90 KRLEKWFSQSPSNTIIATGFI---ASTPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gfi---~~~~~g~~~~lg-rggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i  165 (327)
                      +.|+.+++  .+.|||++|.-   ..+++|.+.++. -.+.|.+|+++|..|+||+++++|||||||++ |+ .|+++++
T Consensus       176 ~aI~~LLe--~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~-~p~~~~i  251 (313)
T PRK12454        176 EVIKALVE--NGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-YG-KPDQKPL  251 (313)
T ss_pred             HHHHHHHH--CCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CC-CCCCeEc
Confidence            78888898  89999999862   135566554322 23569999999999999999999999999986 44 4789999


Q ss_pred             eecCHHHHHHHHh---cCCCcccHh--h-HHHHHhCCCCEEEeecC------CCCCCceEEe
Q 020388          166 RTLSYQEAWEMSY---FGANVLHPR--T-IIPVMRYDIPIVIRNIF------NLSVPGIMIC  215 (327)
Q Consensus       166 ~~is~~ea~~l~~---~g~~v~~p~--a-~~~a~~~~I~v~I~n~~------~~e~~GT~I~  215 (327)
                      ++++++|+.++..   ++.+.|.||  + ++.+.+.+.+++|.+..      +++ .||+|.
T Consensus       252 ~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~~~~i~~aL~G~-~GT~I~  312 (313)
T PRK12454        252 DKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIASLEKAVEALEGK-TGTRII  312 (313)
T ss_pred             cccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECchHHHHHHHCCC-CCeEeC
Confidence            9999999988774   345789995  4 45555556788887542      233 589885

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=99.35  E-value=4.5e-12  Score=92.09  Aligned_cols=65  Identities=32%  Similarity=0.452  Sum_probs=62.6

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~  305 (327)
                      +++|+++|.++...|++.+++|+.|++.||+++|++|+.++.+++|+++++|..++++.||++|+
T Consensus         1 ~~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~lh~~~~   65 (66)
T cd04916           1 LALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFF   65 (66)
T ss_pred             CeEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999998889999999999999999999999996

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK12354 carbamate kinase; Reviewed

Probab=99.34  E-value=3.4e-11  Score=113.12  Aligned_cols=122  Identities=20%  Similarity=0.158  Sum_probs=89.4

Q ss_pred             HHHHHHhhcCCCceEEecCceec----CCCCCeeeec-CCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeE
Q 020388           90 KRLEKWFSQSPSNTIIATGFIAS----TPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gfi~~----~~~g~~~~lg-rggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~  164 (327)
                      +.|+.+++  .+.|||.+|.=|.    +.++...... ..++|.+|+.||..|+|+.++|+|||||||+++ . .|++++
T Consensus       166 ~~I~~Ll~--~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~-~-~p~~k~  241 (307)
T PRK12354        166 RPIRWLLE--KGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDW-G-KPTQRA  241 (307)
T ss_pred             HHHHHHHH--CCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCC-C-CCCCeE
Confidence            77888888  7888777643121    1223322211 346899999999999999999999999999974 3 478999


Q ss_pred             EeecCHHHHHHHHhcCCCcccHh--h-HHHHHhCCCCEEEeecC------CCCCCceEEeCC
Q 020388          165 LRTLSYQEAWEMSYFGANVLHPR--T-IIPVMRYDIPIVIRNIF------NLSVPGIMICRP  217 (327)
Q Consensus       165 i~~is~~ea~~l~~~g~~v~~p~--a-~~~a~~~~I~v~I~n~~------~~e~~GT~I~~~  217 (327)
                      +++++.+|+.++ .++++.|.||  | ++.+.+.+.+++|.+..      ..+ .||+|...
T Consensus       242 i~~it~~e~~~~-~f~~GgM~pKV~AA~~~~~~gg~~viI~~~~~l~~al~G~-~GT~I~~~  301 (307)
T PRK12354        242 IAQATPDELREL-GFAAGSMGPKVEAACEFVRATGKIAGIGSLEDIQAILAGE-AGTRISPE  301 (307)
T ss_pred             CCCCCHHHHHhh-CCCcCChHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCCC-CceEEecC
Confidence            999999999888 6788899996  4 45555556678775432      222 69999753

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=99.31  E-value=1.1e-11  Score=90.03  Aligned_cols=65  Identities=46%  Similarity=0.718  Sum_probs=62.2

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~  305 (327)
                      +++|+++|.++.+.+++.+++|+.|++.||+++|++|+.++.+++|+++++|.+++.+.||+.|.
T Consensus         1 ~~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~~~~~~~Lh~~~~   65 (66)
T cd04924           1 VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAVHDEFG   65 (66)
T ss_pred             CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHhc
Confidence            47999999999999999999999999999999999998889999999999999999999999883

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06291 aspartate kinase; Provisional

Probab=99.30  E-value=1.3e-11  Score=123.32  Aligned_cols=123  Identities=24%  Similarity=0.343  Sum_probs=94.2

Q ss_pred             cccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchh-----hhhcCCeeeEEeecCeeEEEeecCCCCCcccH
Q 020388          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDE-----QIIDSPVKGFATIDNLALVNVEGTGMAGVPGT  257 (327)
Q Consensus       183 v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~-----~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v  257 (327)
                      ++-.+.+..+.++||++...+....+..=+...+.. +.+...     ......++.+++.+++++|+++|.+|++.+++
T Consensus       336 g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~~~-d~~~av~~L~~~~~~~~~~~i~~~~~~a~IsvvG~gm~~~~gv  414 (465)
T PRK06291        336 GTAARIFSALAEEGVNVIMISQGSSESNISLVVDEA-DLEKALKALRREFGEGLVRDVTFDKDVCVVAVVGAGMAGTPGV  414 (465)
T ss_pred             cHHHHHHHHHHHCCCcEEEEEecCCCceEEEEEeHH-HHHHHHHHHHHHHHHhcCcceEEeCCEEEEEEEcCCccCCcCh
Confidence            444567788889999987776443221112222221 111000     01112357799999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388          258 ANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (327)
Q Consensus       258 ~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~  306 (327)
                      .+|+|++|++.||+|.||+|++|+.+|||+|+++|.++++++||++|+.
T Consensus       415 ~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh~~f~~  463 (465)
T PRK06291        415 AGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHDEFIL  463 (465)
T ss_pred             HHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999953

>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria

Probab=99.29  E-value=9.7e-12  Score=111.15  Aligned_cols=101  Identities=22%  Similarity=0.236  Sum_probs=80.0

Q ss_pred             HHHHHHhhcCCCceEEecCceec----CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEE
Q 020388           90 KRLEKWFSQSPSNTIIATGFIAS----TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gfi~~----~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i  165 (327)
                      ..+...+.  .+.|||+.++ +.    ++.++..++   .+|+.|+.+|..|+|++++++|||||||++|      ++++
T Consensus        82 ~~~~~~~~--~g~ipV~~P~-~~~~~~~~~~~~~~~---ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~~i  149 (203)
T cd04240          82 AELTDVLE--RGKIAILLPY-RLLLDTDPLPHSWEV---TSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GKLV  149 (203)
T ss_pred             HHHHHHHH--CCCcEEEeCc-hhhcccCCCCccccc---CHHHHHHHHHHHcCCCEEEEEeCCccccCCC------CcCc
Confidence            56677776  7899999886 33    223333332   3799999999999999999999999999865      7899


Q ss_pred             eecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCC
Q 020388          166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL  207 (327)
Q Consensus       166 ~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~  207 (327)
                      +++++.|+..     ..++++.+.+.+.++|++++|.++..|
T Consensus       150 ~~i~~~e~~~-----~~~id~~~~~~~~~~gi~v~I~~g~~~  186 (203)
T cd04240         150 NEIAAAELLG-----ETSVDPAFPRLLTKYGIRCYVVNGDDP  186 (203)
T ss_pred             cccCHHHhCC-----CCeehhhHHHHHHhCCCeEEEECCCCc
Confidence            9999987643     666777677888999999999998755

Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=99.26  E-value=3.9e-11  Score=118.70  Aligned_cols=121  Identities=26%  Similarity=0.257  Sum_probs=89.2

Q ss_pred             cccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcc---hhhhh-cCCeeeEEeecCeeEEEeecCCCCCcccHH
Q 020388          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENE---DEQII-DSPVKGFATIDNLALVNVEGTGMAGVPGTA  258 (327)
Q Consensus       183 v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~---~~~~~-~~~v~~i~~~~~la~IsIvG~~~~~~~~v~  258 (327)
                      ++..+-+..+.++||++........+..-+...+..+ .+.   .++.. ......+.+.+++|+|++||.||..+||++
T Consensus       322 g~~a~vf~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~-~~~a~~~l~~~~~~~~~~v~~~~~~a~vsiVG~gm~~~~gva  400 (447)
T COG0527         322 GFAARVFGILAEAGINVDLITQSISEVSISFTVPESD-APRALRALLEEKLELLAEVEVEEGLALVSIVGAGMRSNPGVA  400 (447)
T ss_pred             cHHHHHHHHHHHcCCcEEEEEeccCCCeEEEEEchhh-HHHHHHHHHHHHhhhcceEEeeCCeeEEEEEccccccCcCHH
Confidence            4445667788889999755543322211122223221 110   01111 111226888999999999999999999999


Q ss_pred             HHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388          259 NAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (327)
Q Consensus       259 a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~  306 (327)
                      +++|++|++.+||+.||+  +|+.+|||+|+++|.++|+++||+.|+.
T Consensus       401 a~~f~aL~~~~ini~~is--sSe~~Is~vV~~~~~~~av~~LH~~~~~  446 (447)
T COG0527         401 ARIFQALAEENINIIMIS--SSEISISFVVDEKDAEKAVRALHEAFFL  446 (447)
T ss_pred             HHHHHHHHhCCCcEEEEE--cCCceEEEEEccHHHHHHHHHHHHHHhc
Confidence            999999999999999999  7899999999999999999999999974

>PRK09411 carbamate kinase; Reviewed

Probab=99.25  E-value=1.3e-10  Score=108.57  Aligned_cols=160  Identities=17%  Similarity=0.165  Sum_probs=104.3

Q ss_pred             hcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCc--ee--cCCCCC
Q 020388           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF--IA--STPDNI  117 (327)
Q Consensus        42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gf--i~--~~~~g~  117 (327)
                      +|-.++..--.....+.|- ..-.+++-+..+-.+......++.    +.|+.+++  .+.|||.+|.  ++  .+.+|.
T Consensus       124 iG~~y~~e~a~~l~~e~g~-~~~~dg~g~rrVVpSP~P~~iVe~----~~I~~Ll~--~G~IVI~~gGGGIPV~~~~~G~  196 (297)
T PRK09411        124 IGPVYQPEEQEALEAAYGW-QMKRDGKYLRRVVASPQPRKILDS----EAIELLLK--EGHVVICSGGGGVPVTEDGAGS  196 (297)
T ss_pred             cCCccCHHHHHHHHHhcCC-EEEecCCceEEEccCCCCcceECH----HHHHHHHH--CCCEEEecCCCCCCeEEcCCCe
Confidence            5555555553333334454 333444434332211111123445    78889998  7888888753  12  222344


Q ss_pred             eeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHh---hHHHHHh
Q 020388          118 PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR---TIIPVMR  194 (327)
Q Consensus       118 ~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~---a~~~a~~  194 (327)
                      ..+   .+.|.+|+.||.+|+|++++|+|||||||..+ . .|+++++++++.+|+.++.. ..+.|.||   |++.+.+
T Consensus       197 e~v---IDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~-~-~p~~~~I~~it~~e~~~~~~-~~GgM~pKVeAA~~~v~~  270 (297)
T PRK09411        197 EAV---IDKDLAAALLAEQINADGLVILTDADAVYENW-G-TPQQRAIRHATPDELAPFAK-ADGAMGPKVTAVSGYVRS  270 (297)
T ss_pred             EEe---cCHHHHHHHHHHHhCCCEEEEEeCchhhccCC-C-CCCCcCCCCcCHHHHHHhcc-CCCCcHHHHHHHHHHHHh
Confidence            333   35799999999999999999999999999864 2 57789999999999977765 46779996   4566666


Q ss_pred             CCCCEEEeecC------CCCCCceEEe
Q 020388          195 YDIPIVIRNIF------NLSVPGIMIC  215 (327)
Q Consensus       195 ~~I~v~I~n~~------~~e~~GT~I~  215 (327)
                      .+.+++|.+..      ..+ .||+|.
T Consensus       271 ~g~~a~I~~l~~~~~~l~G~-~GT~I~  296 (297)
T PRK09411        271 RGKPAWIGALSRIEETLAGE-AGTCIS  296 (297)
T ss_pred             CCCeEEECChhHHHHHHCCC-CCeEEe
Confidence            77888886542      222 588874

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=99.25  E-value=4.9e-11  Score=126.45  Aligned_cols=134  Identities=19%  Similarity=0.268  Sum_probs=100.4

Q ss_pred             ccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCc--------chhhhhcCCeeeEEeecCeeEEEeecCCCCCcc
Q 020388          184 LHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN--------EDEQIIDSPVKGFATIDNLALVNVEGTGMAGVP  255 (327)
Q Consensus       184 ~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~--------~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~  255 (327)
                      +-.+.+..+.++||++...+....+..=+.+.+...-..        +..+...+.++.+++.+++++|+++|.+|+..|
T Consensus       331 ~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~av~~L~~~f~~el~~~~~~~i~~~~~valIsvvG~gm~~~~  410 (819)
T PRK09436        331 MASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLLEPLEVEENLAIISVVGDGMRTHP  410 (819)
T ss_pred             HHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHHHhccCCcceEEEeCCEEEEEEEccCcccCc
Confidence            444678888899999877765432222222222211000        000111235778999999999999999999999


Q ss_pred             cHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCCCCceeEEEEee
Q 020388          256 GTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFSASILS  322 (327)
Q Consensus       256 ~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~~~~~~~~  322 (327)
                      ++++|+|++|++.||||.||+|++|+++|||+|+++|.++++++||++|+.+.     +.+++-|.|
T Consensus       411 gv~arif~aL~~~~InI~~IsqgsSe~~Is~vV~~~d~~~al~~LH~~f~~~~-----~~~~i~l~G  472 (819)
T PRK09436        411 GIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACHQSFFLSD-----QVLDVFVIG  472 (819)
T ss_pred             CHHHHHHHHHHHCCCCEEEEEeccccceEEEEEcHHHHHHHHHHHHHHHhccc-----ccccEEEEe
Confidence            99999999999999999999999999999999999999999999999997542     345555554

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=99.18  E-value=7e-11  Score=86.42  Aligned_cols=63  Identities=38%  Similarity=0.588  Sum_probs=58.5

Q ss_pred             eecCeeEEEeecCCCCC-cccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHH
Q 020388          237 TIDNLALVNVEGTGMAG-VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (327)
Q Consensus       237 ~~~~la~IsIvG~~~~~-~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~  302 (327)
                      +.++++.|+++|.+|.. .||+.+++|++|+++||+|.+++   |+.+++++|+++|.++|+++||+
T Consensus         2 ~~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is---S~~~~~ilV~~~~~~~A~~~L~~   65 (65)
T PF13840_consen    2 IEEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS---SEISISILVKEEDLEKAVEALHE   65 (65)
T ss_dssp             EESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE---ESSEEEEEEEGGGHHHHHHHHHH
T ss_pred             ccCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE---EeeeEEEEEeHHHHHHHHHHhcC
Confidence            46799999999999976 99999999999999999999998   69999999999999999999995

>PRK12352 putative carbamate kinase; Reviewed

Probab=99.17  E-value=1.9e-10  Score=109.00  Aligned_cols=117  Identities=14%  Similarity=0.146  Sum_probs=85.5

Q ss_pred             HHHHHHhhcCCCceEEec-----CceecCCCCC----eeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCC
Q 020388           90 KRLEKWFSQSPSNTIIAT-----GFIASTPDNI----PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVS  160 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~-----Gfi~~~~~g~----~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~  160 (327)
                      +.|+.+++  .+.|+|.+     +. +.+..|+    ..++   +.|.+|+.+|.+|+|++|+|+|||+|||.++|+  |
T Consensus       177 ~~I~~ll~--~g~iVi~~ggggiPv-~~~~~g~~~n~~~nI---naD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~~--~  248 (316)
T PRK12352        177 PAIKALIQ--QGFVVIGAGGGGIPV-VRTDAGDYQSVDAVI---DKDLSTALLAREIHADILVITTGVEKVCIHFGK--P  248 (316)
T ss_pred             HHHHHHHH--CCCEEEecCCCCCCE-EeCCCCCccCceeee---cHHHHHHHHHHHhCCCEEEEEeCchhhccCCCC--C
Confidence            77888888  78895554     21 2233333    2223   379999999999999999999999999987654  6


Q ss_pred             CCeEEeecCHHHHHHHHhcC---CCcccHh--hHHHHHhCCC-CEEEeecC------CCCCCceEEe
Q 020388          161 EAVILRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI-PIVIRNIF------NLSVPGIMIC  215 (327)
Q Consensus       161 ~a~~i~~is~~ea~~l~~~g---~~v~~p~--a~~~a~~~~I-~v~I~n~~------~~e~~GT~I~  215 (327)
                      +++++++++..|+.++...|   .++|.||  |+..+.+.|+ +++|.+..      +.+ .||+|.
T Consensus       249 ~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~~~~i~~al~g~-~GT~I~  314 (316)
T PRK12352        249 QQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITTPECLPAALRGE-TGTHII  314 (316)
T ss_pred             CcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcchHHHHHHHcCC-CCeEEE
Confidence            67899999999999998754   4689995  4444445555 68887642      233 688885

>PRK09034 aspartate kinase; Reviewed

Probab=99.15  E-value=1.3e-10  Score=115.82  Aligned_cols=119  Identities=23%  Similarity=0.243  Sum_probs=90.9

Q ss_pred             HhhHHHHHhCCCCEEEeecCCCCCCceEEe-CCCC-CC---cchh-hhh-cCCeeeEEeecCeeEEEeecCCCCCcccHH
Q 020388          186 PRTIIPVMRYDIPIVIRNIFNLSVPGIMIC-RPPV-DE---NEDE-QII-DSPVKGFATIDNLALVNVEGTGMAGVPGTA  258 (327)
Q Consensus       186 p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~-~~~~-~~---~~~~-~~~-~~~v~~i~~~~~la~IsIvG~~~~~~~~v~  258 (327)
                      .+.+....++||++.+....  + ..-.+. .+.. +.   .... +.. .-.+.++++.+|+++|+++|.+|++.|++.
T Consensus       326 a~if~~la~~~I~Vd~i~ss--~-~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~~~~~va~VsivG~g~~~~~gv~  402 (454)
T PRK09034        326 RKVLQILEDHGISYEHMPSG--I-DDLSIIIRERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGEGMRQTVGVA  402 (454)
T ss_pred             HHHHHHHHHcCCeEEEEcCC--C-cEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEEEeCCEEEEEEECCCCCCCccHH
Confidence            35677888999998776421  1 122222 2211 10   0000 111 113578999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388          259 NAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (327)
Q Consensus       259 a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (327)
                      +++|++|+++||||.||+|++|+.+|||+|+++|.+++++.||++|+.+
T Consensus       403 arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH~~f~~~  451 (454)
T PRK09034        403 AKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIYNAFFKE  451 (454)
T ss_pred             HHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999753

>PRK09084 aspartate kinase III; Validated

Probab=99.12  E-value=5.5e-10  Score=111.14  Aligned_cols=120  Identities=23%  Similarity=0.303  Sum_probs=90.1

Q ss_pred             cccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCc-----chhh--hhcCCeeeEEeecCeeEEEeecCCCCCcc
Q 020388          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDEN-----EDEQ--IIDSPVKGFATIDNLALVNVEGTGMAGVP  255 (327)
Q Consensus       183 v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~-----~~~~--~~~~~v~~i~~~~~la~IsIvG~~~~~~~  255 (327)
                      ++-.+.+....+++|++.......  ..-|....+.....     ....  ..-..+..+.+.+++++|+++|.+|+++|
T Consensus       321 g~~a~if~~l~~~~I~Vd~I~sse--~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~i~~~~~va~IsvvG~gm~~~~  398 (448)
T PRK09084        321 GFLAEVFGILARHKISVDLITTSE--VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCRVEVEEGLALVALIGNNLSKAC  398 (448)
T ss_pred             cHHHHHHHHHHHcCCeEEEEeccC--cEEEEEEechhhhhhhhHHHHHHHHHHHhcCCeEEEECCeEEEEEECCCcccCc
Confidence            444567788889999987776432  11122222221010     0000  01123567888999999999999999999


Q ss_pred             cHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388          256 GTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (327)
Q Consensus       256 ~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~  306 (327)
                      ++++|+|++|++  +||.||+|++|+.+|||+|+++|.++++++||++|++
T Consensus       399 gv~arif~aL~~--~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH~~f~~  447 (448)
T PRK09084        399 GVAKRVFGVLEP--FNIRMICYGASSHNLCFLVPESDAEQVVQALHQNLFE  447 (448)
T ss_pred             ChHHHHHHHHHh--CCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHHHHHhc
Confidence            999999999986  6899999999999999999999999999999999975

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=99.07  E-value=6e-10  Score=109.36  Aligned_cols=121  Identities=25%  Similarity=0.384  Sum_probs=91.2

Q ss_pred             cccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhh-----cCCeeeEEeecCeeEEEeecCCCCCcccH
Q 020388          183 VLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQII-----DSPVKGFATIDNLALVNVEGTGMAGVPGT  257 (327)
Q Consensus       183 v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~-----~~~v~~i~~~~~la~IsIvG~~~~~~~~v  257 (327)
                      ++-.+.+..+.+++|++...+....+..=+.+.... +.....+..     ...+..+.+.+++++|+++|.+|++.||+
T Consensus       275 g~~~~if~~L~~~~I~i~~i~~~~s~~~Is~~V~~~-d~~~a~~~L~~~~~~~~~~~i~~~~~~a~IsvVG~~~~~~~g~  353 (401)
T TIGR00656       275 GFLARIFGALAERNINVDLISQTPSETSISLTVDET-DADEAVRALKDQSGAAGLDRVEVEEGLAKVSIVGAGMVGAPGV  353 (401)
T ss_pred             cHHHHHHHHHHHcCCcEEEEEcCCCCceEEEEEeHH-HHHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCcccCccH
Confidence            344467788889999988776643322222223221 111111101     11246788899999999999999999999


Q ss_pred             HHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388          258 ANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (327)
Q Consensus       258 ~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~  306 (327)
                      ++++|++|+++|||+.+++  +|+.+++|+|+++|.++++++||++|+.
T Consensus       354 ~a~i~~~L~~~gIni~~i~--~s~~~is~vv~~~d~~~av~~Lh~~f~~  400 (401)
T TIGR00656       354 ASEIFSALEEKNINILMIG--SSETNISFLVDEKDAEKAVRKLHEVFEE  400 (401)
T ss_pred             HHHHHHHHHHCCCcEEEEE--cCCCEEEEEEeHHHHHHHHHHHHHHHcc
Confidence            9999999999999999987  7899999999999999999999999964

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK04531 acetylglutamate kinase; Provisional

Probab=99.05  E-value=3.6e-09  Score=103.49  Aligned_cols=114  Identities=14%  Similarity=0.178  Sum_probs=82.5

Q ss_pred             HHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCH-
Q 020388           92 LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY-  170 (327)
Q Consensus        92 i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~-  170 (327)
                      ++.+++  .|.|||++++ |.+..|++.+++   +|..|+.+|.+|+|++++++|||+|||+.|      ++++++++. 
T Consensus       122 I~~~L~--~g~IPVlspl-g~~~~G~~~Nvn---aD~vA~~LA~aL~a~KLIfltdv~GV~d~~------g~~i~~i~~~  189 (398)
T PRK04531        122 VESSLR--AGSIPVIASL-GETPSGQILNIN---ADVAANELVSALQPYKIIFLTGTGGLLDAD------GKLISSINLS  189 (398)
T ss_pred             HHHHHH--CCCEEEEeCc-EECCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCCC------CCCcccCCHH
Confidence            556666  8999999985 777889987775   799999999999999999999999999743      678999996 


Q ss_pred             HHHHHHHhcC--CCcccHh--hHHHHHhCCCCEEEeec----------CCCCCCceEEeCC
Q 020388          171 QEAWEMSYFG--ANVLHPR--TIIPVMRYDIPIVIRNI----------FNLSVPGIMICRP  217 (327)
Q Consensus       171 ~ea~~l~~~g--~~v~~p~--a~~~a~~~~I~v~I~n~----------~~~e~~GT~I~~~  217 (327)
                      +|...+...|  .++|.|+  ++..|.+..-.+.+...          +.....||.|...
T Consensus       190 ~e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g  250 (398)
T PRK04531        190 TEYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPSDLAKELFTHKGSGTLVRRG  250 (398)
T ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCCHHHHHHccCCCCCeEEecC
Confidence            5777776544  4778885  44444433112332222          2223469999743

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=99.05  E-value=9.2e-10  Score=78.78  Aligned_cols=62  Identities=34%  Similarity=0.554  Sum_probs=58.2

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~  305 (327)
                      ++|+++|.++.+.+++.+++|+.|++.||+++|+++  ++.+++|+|+++|.+++++.||+.|+
T Consensus         1 ~~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~--s~~~is~~v~~~d~~~~~~~l~~~~~   62 (63)
T cd04936           1 AKVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST--SEIKISCLIDEDDAEKAVRALHEAFE   62 (63)
T ss_pred             CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc--cCceEEEEEeHHHHHHHHHHHHHHhc
Confidence            578999999999999999999999999999999984  57999999999999999999999984

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=99.05  E-value=1e-09  Score=78.32  Aligned_cols=64  Identities=47%  Similarity=0.733  Sum_probs=60.5

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~  305 (327)
                      ++|+++|.++.+.+++.+++|+.|++.+|++.+++|+.++.+++|++++++.+++++.||+.|+
T Consensus         1 ~~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~~~i~~~v~~~~~~~~~~~l~~~~~   64 (65)
T cd04892           1 ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEVNISFVVDEDDADKAVKALHEEFF   64 (65)
T ss_pred             CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCCCceeEEEEEeHHHHHHHHHHHHHHHh
Confidence            5799999999999999999999999999999999987777999999999999999999999885

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=99.03  E-value=1.3e-09  Score=77.98  Aligned_cols=62  Identities=35%  Similarity=0.554  Sum_probs=58.2

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~  305 (327)
                      ++|+++|.++.+.+++.+++|+.|++++|+++++++  ++.+++|++++++.+++++.||++|+
T Consensus         1 ~~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~--s~~~is~~v~~~~~~~~~~~l~~~l~   62 (63)
T cd04923           1 AKVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST--SEIKISCLVDEDDAEKAVRALHEAFE   62 (63)
T ss_pred             CEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc--cCCeEEEEEeHHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999984  58999999999999999999999984

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00657 asp_kinases aspartate kinase

Probab=98.98  E-value=2.8e-09  Score=106.01  Aligned_cols=120  Identities=26%  Similarity=0.336  Sum_probs=90.4

Q ss_pred             ccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhh-----hhcCCeeeEEeecCeeEEEeecCCCCCcccHH
Q 020388          184 LHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQ-----IIDSPVKGFATIDNLALVNVEGTGMAGVPGTA  258 (327)
Q Consensus       184 ~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~-----~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~  258 (327)
                      +-.+.+..+.++||++........+. .-.+.-+..+......     .....++++++.+++++|+++|.+|++.|++.
T Consensus       317 ~la~if~~L~~~~I~I~~i~q~~se~-sIs~~I~~~~~~~a~~~L~~~~~~~~~~~I~~~~~~a~VsvvG~~~~~~~g~~  395 (441)
T TIGR00657       317 FLARVFGALAEAGINVDLITQSSSET-SISFTVDKEDADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGVA  395 (441)
T ss_pred             HHHHHHHHHHHcCCeEEEEEecCCCc-eEEEEEEHHHHHHHHHHHHHHHHhcCcceEEEcCCeEEEEEEcCCCCCCCchH
Confidence            33467788889999987765332221 1122211111110110     11345788999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388          259 NAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (327)
Q Consensus       259 a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~  306 (327)
                      +++|+.|+++||||.||+  +|+.+++|+|+++|.+++++.||++|++
T Consensus       396 a~if~~La~~~Inv~~i~--~se~~Is~vV~~~d~~~a~~~Lh~~f~~  441 (441)
T TIGR00657       396 SKIFEALAQNGINIEMIS--SSEINISFVVDEKDAEKAVRLLHNALFE  441 (441)
T ss_pred             HHHHHHHHHCCCCEEEEE--ecCCcEEEEEeHHHHHHHHHHHHHHhhC
Confidence            999999999999999998  4689999999999999999999999963

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PLN02825 amino-acid N-acetyltransferase

Probab=98.95  E-value=4.8e-09  Score=105.44  Aligned_cols=108  Identities=9%  Similarity=0.103  Sum_probs=84.1

Q ss_pred             HHHHcCCce----eEEcccceeeccCC--------CCCC----CCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCC
Q 020388           54 VVRKNGIDC----KWMDTREVLIVNPT--------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI  117 (327)
Q Consensus        54 ~L~~~Gi~a----~~l~~~~~~~~~~~--------~~~~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~  117 (327)
                      .|+++|.++    ..++..+-..++..        .+|.    ..+|.    +.|+.+++  .|.|||+++ +|.+.+|+
T Consensus       112 ~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~----~~i~~~L~--~g~Ipvisp-lg~s~~Ge  184 (515)
T PLN02825        112 NLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDV----SRIKERLD--SNCIVLLSN-LGYSSSGE  184 (515)
T ss_pred             HHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcH----HHHHHHHh--CCCeEEECC-ceECCCCC
Confidence            469999998    56655443222211        2332    35666    88888998  899999999 59999999


Q ss_pred             eeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh
Q 020388          118 PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY  178 (327)
Q Consensus       118 ~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~  178 (327)
                      +.+++   +|..|+.+|.+|+|++|+|+||++ +++.      +.+++++++.+|+.++..
T Consensus       185 ~~Nin---aD~vA~avA~aL~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~  235 (515)
T PLN02825        185 VLNCN---TYEVATACALAIGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIR  235 (515)
T ss_pred             EEeeC---HHHHHHHHHHHcCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHH
Confidence            99985   899999999999999999999987 5543      356899999999988865

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=98.95  E-value=5.7e-09  Score=110.38  Aligned_cols=131  Identities=11%  Similarity=0.133  Sum_probs=93.5

Q ss_pred             ccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhh--cCCeeeEEeecCeeEEEeecCCCCCcccHHHHH
Q 020388          184 LHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQII--DSPVKGFATIDNLALVNVEGTGMAGVPGTANAI  261 (327)
Q Consensus       184 ~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~--~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~i  261 (327)
                      +..+-+....+++|++.+.+....+. ...+.-...+.+......  ......+.+.+++++|++||.+|+..+++++++
T Consensus       333 ~~~~if~~l~~~~I~v~~i~~~~s~~-sis~~i~~~~~~~~~~~l~~~~~~~~i~v~~~~a~VsvVG~gm~~~~gv~~~~  411 (810)
T PRK09466        333 AQKELDQLLKRAQLRPLAVGVHPDRQ-LLQLAYTSEVADSALKLLDDAALPGELKLREGLALVALVGAGVTRNPLHCHRF  411 (810)
T ss_pred             HHHHHHHHHHHCCCeEEEEEecCCCc-EEEEEEeHHHHHHHHHHHHhhcCCCcEEEeCCeEEEEEeCCCcccCccHHHHH
Confidence            34567788889999987775443221 222322211111001100  012367888999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcCCCCceeEEEEee
Q 020388          262 FGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQFSASILS  322 (327)
Q Consensus       262 f~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~~~~~~~~  322 (327)
                      |++|++.||++.+  |++|+.+|||+|+++|.++|+++||++|+...     ..+++-+.|
T Consensus       412 f~aL~~~~I~ii~--~~~s~~sis~vV~~~d~~~av~~LH~~f~~~~-----~~i~i~l~G  465 (810)
T PRK09466        412 YQQLKDQPVEFIW--QSEDGLSLVAVLRQGPTESLIQGLHQSLFRAE-----KRIGLVLFG  465 (810)
T ss_pred             HHHHHhCCCcEEE--EeCCCcEEEEEEehHHHHHHHHHHHHHHhCcC-----ceEEEEEEe
Confidence            9999999777655  55789999999999999999999999997532     356666665

>PRK07431 aspartate kinase; Provisional

Probab=98.93  E-value=3.1e-09  Score=109.31  Aligned_cols=72  Identities=31%  Similarity=0.449  Sum_probs=67.8

Q ss_pred             eeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388          233 KGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (327)
Q Consensus       233 ~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~  306 (327)
                      ..+.+.+++|+|++||.+|+.+||+++|+|++|+++||++.+++  +|+.+|||+|+++|.++|+++||++|..
T Consensus       511 ~~i~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~S~~~Is~vV~~~~~~~av~~Lh~~f~~  582 (587)
T PRK07431        511 AEVEDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--TSEIRTSCVVAEDDGVKALQAVHQAFGL  582 (587)
T ss_pred             ceEEEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--ccceEEEEEEeHHHHHHHHHHHHHHhcc
Confidence            44678899999999999999999999999999999999999998  6899999999999999999999999943

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=98.92  E-value=5.6e-09  Score=111.75  Aligned_cols=122  Identities=15%  Similarity=0.138  Sum_probs=90.7

Q ss_pred             CcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCC--cchhh---hhcCCeeeEEeecCeeEEEeecCCCCCccc
Q 020388          182 NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE--NEDEQ---IIDSPVKGFATIDNLALVNVEGTGMAGVPG  256 (327)
Q Consensus       182 ~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~--~~~~~---~~~~~v~~i~~~~~la~IsIvG~~~~~~~~  256 (327)
                      .++..+-+..+.+++|++.+.....  ..=|.........  +...+   .....+..+.+.+++|+|++||.+|++.++
T Consensus       336 ~g~~a~if~~la~~~I~Vd~I~sse--~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i~~~~~va~ISvVG~gm~~~~g  413 (861)
T PRK08961        336 VGFLADVFTLFKKHGLSVDLISSSE--TNVTVSLDPSENLVNTDVLAALSADLSQICRVKIIVPCAAVSLVGRGMRSLLH  413 (861)
T ss_pred             ccHHHHHHHHHHHcCCeEEEEEcCC--CEEEEEEccccccchHHHHHHHHHHHhhcCcEEEeCCeEEEEEeCCCcccCcC
Confidence            3455567888899999987775432  1122222221110  00111   111234567888999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388          257 TANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (327)
Q Consensus       257 v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (327)
                      +++++|++|++.  +|.|++|++|+.+|||+|+++|.++|++.||++|+..
T Consensus       414 v~arif~aL~~~--~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH~~f~~~  462 (861)
T PRK08961        414 KLGPAWATFGAE--RVHLISQASNDLNLTFVIDESDADGLLPRLHAELIES  462 (861)
T ss_pred             hHHHHHHHHhhc--CeEEEECCCccccEEEEEeHHHHHHHHHHHHHHHhcC
Confidence            999999999985  5778999999999999999999999999999999765

>PRK08210 aspartate kinase I; Reviewed

Probab=98.90  E-value=6.7e-09  Score=102.12  Aligned_cols=137  Identities=19%  Similarity=0.283  Sum_probs=95.6

Q ss_pred             EEeecCHHHHHHHHh-cCC---CcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeec
Q 020388          164 ILRTLSYQEAWEMSY-FGA---NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATID  239 (327)
Q Consensus       164 ~i~~is~~ea~~l~~-~g~---~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~  239 (327)
                      .+.-|++.+-..+.. .+.   .+...+-+..+.++||++....... + .++....... .+.........-..+.+.+
T Consensus       261 ~v~~It~~~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~-~-~is~~v~~~~-~~~a~~~l~~~~~~v~~~~  337 (403)
T PRK08210        261 LITGIAHVSNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFP-T-EVVFTVSDED-SEKAKEILENLGLKPSVRE  337 (403)
T ss_pred             ceEEEEEcCCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecC-c-eEEEEEcHHH-HHHHHHHHHHhCCcEEEeC
Confidence            566666554322222 111   3444466778889999987776553 2 2433333211 1111110111111578889


Q ss_pred             CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388          240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (327)
Q Consensus       240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~  305 (327)
                      ++++|+++|.+|++.|++++++|++|+++||++.+++  +|+.+++|+|+++|.++|+++||++|+
T Consensus       338 ~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~--~s~~~is~vv~~~~~~~a~~~Lh~~f~  401 (403)
T PRK08210        338 NCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSA--DSHTTIWVLVKEEDMEKAVNALHDAFE  401 (403)
T ss_pred             CcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEe--cCCCEEEEEEcHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999998866  589999999999999999999999984

>PRK06635 aspartate kinase; Reviewed

Probab=98.87  E-value=1.3e-08  Score=100.10  Aligned_cols=120  Identities=23%  Similarity=0.296  Sum_probs=90.0

Q ss_pred             ccHhhHHHHHhCCCCEEEeecCCCCC--CceEEeCCCCCCcchhh---hh--cCCeeeEEeecCeeEEEeecCCCCCccc
Q 020388          184 LHPRTIIPVMRYDIPIVIRNIFNLSV--PGIMICRPPVDENEDEQ---II--DSPVKGFATIDNLALVNVEGTGMAGVPG  256 (327)
Q Consensus       184 ~~p~a~~~a~~~~I~v~I~n~~~~e~--~GT~I~~~~~~~~~~~~---~~--~~~v~~i~~~~~la~IsIvG~~~~~~~~  256 (327)
                      +-.+.+..+.++||++...+...++.  ..-.+.-...+.+...+   ..  .-.++.+++.+++++|+++|.+|++.|+
T Consensus       276 ~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~~~a~~~L~~~~~~~~~~~i~~~~~ia~isvvG~~~~~~~g  355 (404)
T PRK06635        276 IAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDLEKALELLEEVKDEIGAESVTYDDDIAKVSVVGVGMRSHPG  355 (404)
T ss_pred             HHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHHHHHHHHHHHHHHHcCcceEEEcCCeEEEEEECCCCCCCch
Confidence            33467788889999988777654331  11222211111111111   01  1136779999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHH
Q 020388          257 TANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (327)
Q Consensus       257 v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~  305 (327)
                      +++++|++|+++||||.+++  +|+.+++|+|+++|.+++++.||++|.
T Consensus       356 ~~a~i~~~La~~~Ini~~i~--ss~~~is~vv~~~d~~~a~~~Lh~~f~  402 (404)
T PRK06635        356 VAAKMFEALAEEGINIQMIS--TSEIKISVLIDEKYLELAVRALHEAFG  402 (404)
T ss_pred             HHHHHHHHHHHCCCCEEEEE--ecCCeEEEEEcHHHHHHHHHHHHHHHC
Confidence            99999999999999999998  478999999999999999999999984

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=98.85  E-value=1e-08  Score=71.66  Aligned_cols=60  Identities=43%  Similarity=0.680  Sum_probs=55.9

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHH
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE  301 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh  301 (327)
                      ++|+++|.+|.+.+++.+++|+.|++++|++++++++.++.+++|++++++.+++++.||
T Consensus         1 ~~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v~~~~~~~~~~~lh   60 (60)
T cd04868           1 AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDLEKAVKALH   60 (60)
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEEeHHHHHHHHHHhC
Confidence            478999999989999999999999999999999998877799999999999999999887

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=98.75  E-value=9.6e-08  Score=71.65  Aligned_cols=64  Identities=25%  Similarity=0.394  Sum_probs=56.0

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccH---HHHHHHHHHHHHh
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV---KAVAEALESKFRE  306 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~---~~av~~Lh~~f~~  306 (327)
                      +++|+++|.++.+.+++.+++|++|+++||++++++  +|+.++||++++++.   +..++.|-++|..
T Consensus         1 ~~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~s~~~is~~v~~~~~~~~~~~~~~~~~~l~~   67 (75)
T cd04912           1 ITLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--TSEVSVSLTLDPTKNLSDQLLLDALVKDLSQ   67 (75)
T ss_pred             CEEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--cCCcEEEEEEEchhhccchHHHHHHHHHHHh
Confidence            478999999999999999999999999999999998  468999999999986   5577777776643

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=98.74  E-value=7e-08  Score=73.07  Aligned_cols=62  Identities=16%  Similarity=0.327  Sum_probs=54.2

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHH------HHHHHHHHHH
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK------AVAEALESKF  304 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~------~av~~Lh~~f  304 (327)
                      +++|+|.+.++.+.|++.+++|+.|+++||+|+||+|  ++.++||++++++..      .+++.|.++|
T Consensus         1 ~~~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q--s~~sISftV~~sd~~~~~~~~~~l~~~~~~~   68 (78)
T cd04933           1 VTMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT--SEVSISLTLDPSKLWSRELIQQELDHVVEEL   68 (78)
T ss_pred             CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--cCCEEEEEEEhhhhhhhhhHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999996  579999999999984      4666666655

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]

Probab=98.68  E-value=2.8e-08  Score=85.57  Aligned_cols=83  Identities=25%  Similarity=0.350  Sum_probs=69.8

Q ss_pred             chHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecC
Q 020388          126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF  205 (327)
Q Consensus       126 sD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~  205 (327)
                      ||..++.+|+.++|.++++.|||||||+.+|+    ++++++|+..|...    |-..++|-+=.++.++++.+++.|+.
T Consensus       118 SDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~----~~t~vD~~~P~Ll~k~~m~~~Vvng~  189 (212)
T COG2054         118 SDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT----GETSVDPYLPKLLVKYKMNCRVVNGK  189 (212)
T ss_pred             ccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc----CcccccchhhHHHHHcCCceEEECCC
Confidence            69999999999999999999999999999765    58888887765533    66778888888899999999999987


Q ss_pred             CCC----------CCceEEeC
Q 020388          206 NLS----------VPGIMICR  216 (327)
Q Consensus       206 ~~e----------~~GT~I~~  216 (327)
                      .|+          .+||.|.+
T Consensus       190 ~pervi~~lrGk~~v~T~Ivg  210 (212)
T COG2054         190 EPERVILALRGKEVVGTLIVG  210 (212)
T ss_pred             CHHHHHHHHhccccceEEEeC
Confidence            664          35777754

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=98.65  E-value=1.5e-07  Score=70.73  Aligned_cols=62  Identities=23%  Similarity=0.319  Sum_probs=51.7

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHH--HHHH-HHHHHH
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK--AVAE-ALESKF  304 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~--~av~-~Lh~~f  304 (327)
                      +++|++.|.++.+.||+.+++|+.|+++||+|+||+|  ++.++||+++.++..  ++++ +|-++|
T Consensus         1 ~~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~--s~~~iSftv~~~d~~~~~~~~~~l~~~l   65 (75)
T cd04932           1 QTLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT--SEISVALTLDNTGSTSDQLLTQALLKEL   65 (75)
T ss_pred             CEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee--cCCEEEEEEeccccchhHHHHHHHHHHH
Confidence            4789998888999999999999999999999999996  569999999998843  2443 454444

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=98.59  E-value=2.7e-07  Score=69.00  Aligned_cols=63  Identities=19%  Similarity=0.237  Sum_probs=55.5

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHH-HHHHHHHHHH
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKA-VAEALESKFR  305 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~-av~~Lh~~f~  305 (327)
                      ++.|++.+.+|...|++.+++|+.|+++||+++||+|  ++.++||++++++... .++.|.+++.
T Consensus         1 ~~~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~--s~~~isftv~~~~~~~~~l~~l~~el~   64 (73)
T cd04934           1 ILVINIHSNKKSLSHGFLARIFAILDKYRLSVDLIST--SEVHVSMALHMENAEDTNLDAAVKDLQ   64 (73)
T ss_pred             CEEEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEehhhcChHHHHHHHHHHH
Confidence            4689999999999999999999999999999999996  5699999999987755 7777777764

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=98.55  E-value=3.7e-07  Score=65.50  Aligned_cols=60  Identities=22%  Similarity=0.274  Sum_probs=53.9

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHH
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF  304 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f  304 (327)
                      .|++.|.+|.+.+++.+++|+.|+++||+++||++  ++.++||+++.++.++.++.|-+++
T Consensus         2 ~i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t--~~~~is~~v~~~~~~~~~~~l~~~l   61 (62)
T cd04890           2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT--SENSVTLYLDDSLLPKKLKRLLAEL   61 (62)
T ss_pred             EEEEeccccCcccCHHHHHHHHHHHcCCeEEEEec--CCCEEEEEEehhhhhHHHHHHHHhh
Confidence            57899999999999999999999999999999985  6799999999999888887776654

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=98.55  E-value=4.7e-07  Score=68.03  Aligned_cols=63  Identities=27%  Similarity=0.384  Sum_probs=54.0

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEecccc--HHH-HHHHHHHHHH
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKE--VKA-VAEALESKFR  305 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d--~~~-av~~Lh~~f~  305 (327)
                      +.+|++.+.++.+.|++.+++|+.|+++||+|+||+|  ++.++||++++++  ... .++.|-+++.
T Consensus         1 ~~~i~i~~~~~~~~~g~~~~IF~~La~~~I~vDmI~~--s~~~isftv~~~~~~~~~~~~~~l~~el~   66 (75)
T cd04935           1 IRLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVST--SETNVTVSLDPDPNGLDPDVLDALLDDLN   66 (75)
T ss_pred             CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEeCcccccchHHHHHHHHHHH
Confidence            3689999999999999999999999999999999996  5699999999998  233 6666666654

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=98.55  E-value=4.6e-07  Score=66.58  Aligned_cols=62  Identities=34%  Similarity=0.523  Sum_probs=54.8

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEeccccHHHHHHHHHHHH
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEKEVKAVAEALESKF  304 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~~~d~~~av~~Lh~~f  304 (327)
                      +++|+++|  +.+.|++.+++|+.|+++||++++++|+.+   ..+++|++++++.+.+++.||+..
T Consensus         1 ~~~v~v~~--~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~~d~~~~~~~l~~~~   65 (75)
T cd04913           1 QAKITLRG--VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPKSDLKKALAVLEKLK   65 (75)
T ss_pred             CeEEEECC--CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecHHHHHHHHHHHHHHH
Confidence            46889987  678899999999999999999999998765   357999999999999999999943

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=98.53  E-value=4.2e-07  Score=63.94  Aligned_cols=57  Identities=35%  Similarity=0.599  Sum_probs=50.7

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc---cEEEEEeccccHHHHHHHH
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE---HSVCFAVPEKEVKAVAEAL  300 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~---~sIs~~V~~~d~~~av~~L  300 (327)
                      ++|+++|  +.+.+++.+++|+.|+++||++++++|+.+.   .+++|++++++.+++++.|
T Consensus         1 ~~v~v~~--~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~~~~~~~~~~l   60 (61)
T cd04891           1 AQVTIKG--VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPKSDLEKALAIL   60 (61)
T ss_pred             CEEEEec--CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeHHHHHHHHHHh
Confidence            4688887  5788999999999999999999999997765   8899999999999988765

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]

Probab=98.40  E-value=3.3e-06  Score=77.86  Aligned_cols=122  Identities=20%  Similarity=0.241  Sum_probs=85.7

Q ss_pred             HHHHHHhhcCCCceEEecCceec----CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEE
Q 020388           90 KRLEKWFSQSPSNTIIATGFIAS----TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gfi~~----~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i  165 (327)
                      +.|+.+++  .+.++|..|-=|.    +.+|..-.=.--+-|.+++.||..++||.++|+||||+||-.= + -|+.+.+
T Consensus       175 ~~Ik~L~~--~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~-g-kp~q~~L  250 (312)
T COG0549         175 EAIKALLE--SGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNF-G-KPNQQAL  250 (312)
T ss_pred             HHHHHHHh--CCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecC-C-Cccchhh
Confidence            66888888  7888888773121    1121100000013599999999999999999999999999752 2 2567899


Q ss_pred             eecCHHHHHHHHhcC---CCcccHh---hHHHHHhCCCCEEEeecCCC-----CCCceEEe
Q 020388          166 RTLSYQEAWEMSYFG---ANVLHPR---TIIPVMRYDIPIVIRNIFNL-----SVPGIMIC  215 (327)
Q Consensus       166 ~~is~~ea~~l~~~g---~~v~~p~---a~~~a~~~~I~v~I~n~~~~-----e~~GT~I~  215 (327)
                      ++++.+|+++....|   .+=|-||   |+....+.|=+.+|.+..+.     -..||.|.
T Consensus       251 ~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~ItsLe~~~~~l~g~~GT~I~  311 (312)
T COG0549         251 DRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITSLENAEAALEGKAGTVIV  311 (312)
T ss_pred             cccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECcHHHHHHHhccCCCcEec
Confidence            999999998887643   5678896   66777777778888765321     13588874

>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=98.28  E-value=4.7e-06  Score=61.15  Aligned_cols=57  Identities=21%  Similarity=0.345  Sum_probs=48.0

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHH
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~  302 (327)
                      ++|+|.|.  .+.|++.+++|+.|+++||+|+||++. ++ +++|+++.+|.+++...|.+
T Consensus         2 ~~vtv~~~--~~~~~~~a~if~~La~~~InvDmI~~~-~~-~isFtv~~~d~~~~~~il~~   58 (67)
T cd04914           2 TQIKVKAK--DNENDLQQRVFKALANAGISVDLINVS-PE-EVIFTVDGEVAEKAVDILEK   58 (67)
T ss_pred             eEEEEecC--CCCccHHHHHHHHHHHcCCcEEEEEec-CC-CEEEEEchhhHHHHHHHHHH
Confidence            67888874  456999999999999999999999876 34 79999999999998666544

This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and

>PLN02551 aspartokinase

Probab=98.22  E-value=6.6e-06  Score=83.37  Aligned_cols=64  Identities=19%  Similarity=0.357  Sum_probs=59.4

Q ss_pred             CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHH
Q 020388          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKA  295 (327)
Q Consensus       230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~  295 (327)
                      ..+++|+..+|+++|+|.|.+|.+.+++++++|+.|+++||+|+||+  +|+.+|||++++.+...
T Consensus       355 ~~v~~It~~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Is--sSe~sIs~~v~~~~~~~  418 (521)
T PLN02551        355 AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSISLTLDPSKLWS  418 (521)
T ss_pred             CcccceecCCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEe--ccCCEEEEEEehhHhhh
Confidence            35899999999999999999999999999999999999999999998  46899999999998755

>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway

Probab=97.61  E-value=0.00027  Score=52.39  Aligned_cols=65  Identities=20%  Similarity=0.254  Sum_probs=58.3

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~  306 (327)
                      ..|.+.+.+|.+.+|+.+++|+.|+++++++.+...++.+.+.++..+.+..++++..|.+.|..
T Consensus         2 ~alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~k~~~r~~~~Le~~~p~   66 (71)
T cd04910           2 FALEVFDQDMVGEVGYDLEILELLQRFKVSIIAKDTNANTITHYLAGSLKTIKRLTEDLENRFPN   66 (71)
T ss_pred             eEEEEeCCCccCChhHHHHHHHHHHHcCCeEEEEecCCCeEEEEEEcCHHHHHHHHHHHHHhCcc
Confidence            45788999999999999999999999999999998877788888888888999999999998853

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase

>PRK05925 aspartate kinase; Provisional

Probab=97.53  E-value=0.00049  Score=68.58  Aligned_cols=70  Identities=14%  Similarity=0.240  Sum_probs=56.3

Q ss_pred             CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccH-HHHHHHHHHH
Q 020388          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV-KAVAEALESK  303 (327)
Q Consensus       230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~-~~av~~Lh~~  303 (327)
                      ..+++|+..+|+++|++.+..  ..+++++++|+.|+++||+|++++  +++.++||++++++. +.+++.|..+
T Consensus       289 ~~ik~It~~~~~~~i~v~~~~--~~~~~~~~if~~l~~~~I~vd~i~--s~~~sis~~i~~~~~~~~~~~~l~~~  359 (440)
T PRK05925        289 PRIKALSLKQNQALWSVDYNS--LGLVRLEDVLGILRSLGIVPGLVM--AQNLGVYFTIDDDDISEEYPQHLTDA  359 (440)
T ss_pred             CceEEEEEeCCEEEEEEecCC--cchhHHHHHHHHHHHcCCcEEEEe--ccCCEEEEEEechhccHHHHHHHHHH
Confidence            358999999999999997643  347788999999999999999986  346899999999876 4456655544

>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=97.00  E-value=0.0021  Score=48.28  Aligned_cols=70  Identities=10%  Similarity=0.219  Sum_probs=54.1

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHH-HHHHHHHHHHhhhcCCCC
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKA-VAEALESKFREALNAGRL  313 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~-av~~Lh~~f~~~~~~~~~  313 (327)
                      +.|+|.-..|....|+..|+++.|.++||+++++.  ++-.++|++++++++.. .++.+-.++..+++.+.+
T Consensus         2 ~~I~i~K~~Mn~evGF~rk~L~I~E~~~is~Eh~P--SGID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i   72 (76)
T cd04911           2 CSIYISKYLMNREVGFGRKLLSILEDNGISYEHMP--SGIDDISIIIRDNQLTDEKEQKILAEIKEELHPDEI   72 (76)
T ss_pred             ceEehhHhhccchhcHHHHHHHHHHHcCCCEeeec--CCCccEEEEEEccccchhhHHHHHHHHHHhcCCCEE
Confidence            45666677787888999999999999999999997  56889999999997766 555555555555544443

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=96.98  E-value=0.0015  Score=46.49  Aligned_cols=53  Identities=26%  Similarity=0.376  Sum_probs=44.5

Q ss_pred             CCCcccHHHHHHHHHHhCCCCEEEEEecCCc-----cEEEEEeccccHHHHHHHHHHH
Q 020388          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE-----HSVCFAVPEKEVKAVAEALESK  303 (327)
Q Consensus       251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~-----~sIs~~V~~~d~~~av~~Lh~~  303 (327)
                      +.+.||+++++++.|+++|+||.++.+..+.     ..+.+..+..+.+++++.|++.
T Consensus         7 ~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   64 (66)
T PF01842_consen    7 VPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEAL   64 (66)
T ss_dssp             EETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcc
Confidence            5688999999999999999999999987753     3455557778899999999874

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PRK09181 aspartate kinase; Validated

Probab=96.94  E-value=0.0025  Score=64.13  Aligned_cols=90  Identities=17%  Similarity=0.206  Sum_probs=72.8

Q ss_pred             CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccc--cHHHHHHHHHHHHHhh
Q 020388          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEK--EVKAVAEALESKFREA  307 (327)
Q Consensus       230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~--d~~~av~~Lh~~f~~~  307 (327)
                      ..+++|+..+++++|++.|.+|.+.+++.+++|+.|+++||+|+|++  +++.++||+++.+  +.+++++.|++.|..+
T Consensus       318 ~~ik~It~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~--ss~~sis~~v~~~~~~~~~~~~~L~~~~~~~  395 (475)
T PRK09181        318 PRVEIIAGSDKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYISKA--TNANTITHYLWGSLKTLKRVIAELEKRYPNA  395 (475)
T ss_pred             ccceeEeccCCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEEEE--ecCcEEEEEEcCChHHHHHHHHHHHHhcCCc
Confidence            34789999999999999999999999999999999999999999997  4589999999988  3677788888777422


Q ss_pred             -hcCCCCce-eEEEEeecc
Q 020388          308 -LNAGRLSQ-FSASILSQD  324 (327)
Q Consensus       308 -~~~~~~~~-~~~~~~~~~  324 (327)
                       +.   .+. -.++++|..
T Consensus       396 ~i~---~~~~a~VsvVG~g  411 (475)
T PRK09181        396 EVT---VRKVAIVSAIGSN  411 (475)
T ss_pred             eEE---ECCceEEEEeCCC
Confidence             21   122 447777753

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=96.86  E-value=0.0037  Score=48.18  Aligned_cols=66  Identities=20%  Similarity=0.173  Sum_probs=54.7

Q ss_pred             CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEeccccHHHHHHHHHHHHHhhh
Q 020388          240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPEKEVKAVAEALESKFREAL  308 (327)
Q Consensus       240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~~~d~~~av~~Lh~~f~~~~  308 (327)
                      ..++|++.|.   ++||+.+.+++.|+++|+||.=|||+.-  -.++-++|.-.+......++.+++..+.
T Consensus         2 ~~avITV~Gk---Dr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~   69 (90)
T COG3830           2 MRAVITVIGK---DRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEVVDFAALRDELAAEG   69 (90)
T ss_pred             ceEEEEEEcC---CCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHhccHHHHHHHHHHHH
Confidence            4689999994   6899999999999999999999998763  4678888888877777888888775543

>COG3603 Uncharacterized conserved protein [Function unknown]

Probab=96.17  E-value=0.032  Score=45.14  Aligned_cols=71  Identities=17%  Similarity=0.210  Sum_probs=60.1

Q ss_pred             CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHH
Q 020388          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK  303 (327)
Q Consensus       230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~  303 (327)
                      +....|....+-....+.|.---+-+|+++.+.+.|+++||.|..+|.-   ..=-++|+++|+++|+++|.+.
T Consensus        52 ~vp~~V~~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavSty---dtDhiLVr~~dLekAv~~L~ea  122 (128)
T COG3603          52 RVPDVVQIEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTY---DTDHILVREEDLEKAVKALEEA  122 (128)
T ss_pred             cCCcceEecCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEec---cCceEEEehhhHHHHHHHHHHc
Confidence            4556778888999999999766678999999999999999999999844   2234789999999999999774

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.08  E-value=0.033  Score=40.87  Aligned_cols=53  Identities=17%  Similarity=0.330  Sum_probs=43.0

Q ss_pred             CCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEeccccHHHHHHHHHHHH
Q 020388          252 AGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEKEVKAVAEALESKF  304 (327)
Q Consensus       252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~~~d~~~av~~Lh~~f  304 (327)
                      .+.||+++++++.|++.|+++.++++...   ...++|.++..+.+..++.|.+.+
T Consensus         8 ~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L   63 (76)
T cd04888           8 EHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEEL   63 (76)
T ss_pred             cCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHH
Confidence            46799999999999999999999987432   366999998888876666666655

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]

Probab=96.06  E-value=0.013  Score=58.34  Aligned_cols=119  Identities=13%  Similarity=0.064  Sum_probs=83.7

Q ss_pred             hhcHHHHHHHHHHHHHHcCCceeEEccccee--eccCC--------CCCC----CCCCchHHHHHHHHHhhcCCCceEEe
Q 020388           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVL--IVNPT--------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIA  106 (327)
Q Consensus        41 s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~--~~~~~--------~~~~----~~~~~~~~~~~i~~~l~~~~~~vpVv  106 (327)
                      -.||.--.  +...|.++|-.+++.+.....  .++.+        .|+.    .++|.    ++++.+++  .|.+|++
T Consensus       170 ~~~E~n~~--lv~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~----d~i~~l~~--~G~mp~L  241 (520)
T KOG2436|consen  170 VSLEANLN--LVINLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDV----DRIRHLLD--AGSMPLL  241 (520)
T ss_pred             chhhhhhH--HHHHHHHhhceeccccccccccceeecccccccccceeeeecccceech----hhhhhhhh--CCCchhe
Confidence            35776333  778899999999887766332  11111        1221    34555    77888887  8899998


Q ss_pred             cCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHH
Q 020388          107 TGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS  177 (327)
Q Consensus       107 ~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~  177 (327)
                      .. .+.+..|++++++   +|..|..+|..|+|+++++.+|+ |..-.     .+.+.+..++.+|...+.
T Consensus       242 ~s-la~TaSGqvlnvN---a~~~a~elA~~L~~~kli~l~d~-g~~l~-----e~ge~~S~l~l~~e~~~l  302 (520)
T KOG2436|consen  242 RS-LAATASGQVLNVN---ADEVAGELALALGPDKLILLMDK-GRILK-----ENGEDISSLILQEEDAGL  302 (520)
T ss_pred             hh-hcccCccceEEee---HHHHhhHHHhccCcceeEEeccc-ccccc-----cCcccccccccchhHhhh
Confidence            87 4888999999885   89999999999999999999997 44432     234556666655554443

>PRK08841 aspartate kinase; Validated

Probab=95.95  E-value=0.025  Score=55.69  Aligned_cols=58  Identities=17%  Similarity=0.264  Sum_probs=50.0

Q ss_pred             CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHH
Q 020388          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAV  296 (327)
Q Consensus       230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~a  296 (327)
                      ..+++|+..+|+++|++.|.       ..+++|+.|+++||+++++++  +..+++|++++.+.+++
T Consensus       247 ~~i~~i~~~~~~~~i~v~~~-------~~~~i~~~l~~~~i~v~~i~~--~~~~~~~~v~~~~~~~~  304 (392)
T PRK08841        247 QAVCGIALQRDLALIEVESE-------SLPSLTKQCQMLGIEVWNVIE--EADRAQIVIKQDACAKL  304 (392)
T ss_pred             CcEEEEEEeCCeEEEEeccc-------hHHHHHHHHHHcCCCEEEEEe--cCCcEEEEECHHHHHHH
Confidence            46999999999999999762       368999999999999999985  56889999998877664

>PRK04435 hypothetical protein; Provisional

Probab=95.75  E-value=0.12  Score=43.75  Aligned_cols=77  Identities=14%  Similarity=0.270  Sum_probs=55.0

Q ss_pred             ecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc---cEEEEEeccccHHHHHHHHHHHHHhhhcCCCCc
Q 020388          238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE---HSVCFAVPEKEVKAVAEALESKFREALNAGRLS  314 (327)
Q Consensus       238 ~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~---~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~  314 (327)
                      ....+.+.+..   .+.||+++++++.+++.|+||..|+|+.+.   .+++|.++-.+....++.|-+.+.      .++
T Consensus        66 ~~r~vtL~i~l---~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~------~i~  136 (147)
T PRK04435         66 KGKIITLSLLL---EDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLR------NLD  136 (147)
T ss_pred             CCcEEEEEEEE---ecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHH------cCC
Confidence            34566677764   567999999999999999999999986532   568888888887755666655552      222


Q ss_pred             e-eEEEEeec
Q 020388          315 Q-FSASILSQ  323 (327)
Q Consensus       315 ~-~~~~~~~~  323 (327)
                      - .+++|+|+
T Consensus       137 gV~~V~i~~~  146 (147)
T PRK04435        137 GVEKVELIGM  146 (147)
T ss_pred             CcEEEEEEec
Confidence            2 35666664

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=95.26  E-value=0.11  Score=37.40  Aligned_cols=53  Identities=19%  Similarity=0.262  Sum_probs=39.8

Q ss_pred             CCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHH
Q 020388          251 MAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK  303 (327)
Q Consensus       251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~  303 (327)
                      +.+.||.++++.+.|+++|+||..+.....+....+-+.-++.+++.+.|.+.
T Consensus         8 v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~~   60 (66)
T cd04908           8 LENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKEA   60 (66)
T ss_pred             EcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHHC
Confidence            67889999999999999999998766433333455555567777888887653

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=94.64  E-value=0.13  Score=38.21  Aligned_cols=45  Identities=24%  Similarity=0.379  Sum_probs=33.6

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEec
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVP  289 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~  289 (327)
                      .+|++.|.   +.||+.+++++.|+++|.||.-+.|..-  ..++.+.|.
T Consensus         3 ~vItv~G~---DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~   49 (76)
T PF13740_consen    3 LVITVVGP---DRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVS   49 (76)
T ss_dssp             EEEEEEEE-----TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEec---CCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEE
Confidence            57999994   6899999999999999999999888764  344444443

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=94.55  E-value=0.14  Score=33.51  Aligned_cols=48  Identities=25%  Similarity=0.450  Sum_probs=37.8

Q ss_pred             CcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEeccc-cHHHHHHHH
Q 020388          253 GVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEK-EVKAVAEAL  300 (327)
Q Consensus       253 ~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~~-d~~~av~~L  300 (327)
                      +.++..+++++.|+++++++..+.+...    ...+++.++.. +.+.+++.|
T Consensus         7 ~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   59 (60)
T cd02116           7 DRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL   59 (60)
T ss_pred             CCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechHHHHHHHHHh
Confidence            4689999999999999999999986543    36788888877 566665554

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=94.36  E-value=0.22  Score=43.42  Aligned_cols=68  Identities=15%  Similarity=0.230  Sum_probs=49.7

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC----CccEEEEEeccc--cHHHHHHHHHHHHHhhhcCCCCc
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS----SEHSVCFAVPEK--EVKAVAEALESKFREALNAGRLS  314 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~----s~~sIs~~V~~~--d~~~av~~Lh~~f~~~~~~~~~~  314 (327)
                      .+++.+   .+.||+++|+.+.|+.+|+||..++.+.    ...+++++++..  ..+++.+.|++ +.+.++-+.+.
T Consensus         4 ~isvlv---~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~K-LidVl~V~~~~   77 (174)
T CHL00100          4 TLSVLV---EDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYK-LVNILKVQDIT   77 (174)
T ss_pred             EEEEEE---eCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHH-HhHhhEEEecC
Confidence            366775   4789999999999999999999999765    245788889875  35666777766 34444444433

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.27  E-value=0.24  Score=36.65  Aligned_cols=57  Identities=23%  Similarity=0.390  Sum_probs=39.2

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEE--eccc-cHHHHHHHHHH
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFA--VPEK-EVKAVAEALES  302 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~--V~~~-d~~~av~~Lh~  302 (327)
                      +|++.|   .+.||+.+++.+.|+++|+||.-++|..-  ...+.+.  +++. +...+.+.|..
T Consensus         1 ~vtv~G---~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~   62 (75)
T cd04870           1 LITVTG---PDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLF   62 (75)
T ss_pred             CEEEEc---CCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHH
Confidence            378888   47899999999999999999999875542  2344444  4443 44444444444

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=93.77  E-value=0.26  Score=37.69  Aligned_cols=52  Identities=19%  Similarity=0.199  Sum_probs=39.0

Q ss_pred             CCCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEec-cc--cHHHHHHHHHH
Q 020388          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVP-EK--EVKAVAEALES  302 (327)
Q Consensus       251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~-~~--d~~~av~~Lh~  302 (327)
                      ..+.||+++|+...|+..|.||..++-+.++    .++++++. .+  ..+++.+.|++
T Consensus         9 VeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~K   67 (84)
T PRK13562          9 VADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQ   67 (84)
T ss_pred             EECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhC
Confidence            3578999999999999999999999988764    37888885 22  22444444444

>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]

Probab=93.34  E-value=0.16  Score=49.37  Aligned_cols=75  Identities=16%  Similarity=0.329  Sum_probs=65.7

Q ss_pred             hcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHH--HHH-HHHHHHH
Q 020388          228 IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK--AVA-EALESKF  304 (327)
Q Consensus       228 ~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~--~av-~~Lh~~f  304 (327)
                      .+...+.|+.++|+.++.|-...|....|+++++|..|.+.||.|+.|+  +||.+||..++.++..  +++ +.||+.+
T Consensus       380 ~k~~~TsI~lK~nv~mldI~Str~l~q~GFLAkvFti~ek~~isVDvva--TSEV~iSltL~~~~~~sreliq~~l~~a~  457 (559)
T KOG0456|consen  380 SKAGLTSIVLKRNVTMLDIASTRMLGQHGFLAKVFTIFEKLGISVDVVA--TSEVSISLTLDPSKLDSRELIQGELDQAV  457 (559)
T ss_pred             hhccceEEEEeccEEEEEecccchhhhhhHHHHHHHHHHHhCcEEEEEE--eeeEEEEEecChhhhhhHHHHHhhHHHHH
Confidence            3457899999999999999999999999999999999999999999998  7899999999887665  344 6777765

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=92.69  E-value=0.46  Score=34.86  Aligned_cols=33  Identities=21%  Similarity=0.407  Sum_probs=29.2

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEec
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA  278 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~  278 (327)
                      +|++.|   .+.||+.+++.+.|+++|+||.-+++.
T Consensus         1 ii~v~g---~D~~Giv~~it~~l~~~g~nI~~~~~~   33 (74)
T cd04875           1 ILTLSC---PDRPGIVAAVSGFLAEHGGNIVESDQF   33 (74)
T ss_pred             CEEEEc---CCCCCHHHHHHHHHHHcCCCEEeeeee
Confidence            367887   468999999999999999999999876

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=92.66  E-value=0.48  Score=37.19  Aligned_cols=45  Identities=16%  Similarity=0.211  Sum_probs=36.2

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEec
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVP  289 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~  289 (327)
                      ..|++.   ..+.||+++|+...|+..|.||+.++-+.++    .++++++.
T Consensus         9 ~tisvl---v~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~   57 (96)
T PRK08178          9 VILELT---VRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVN   57 (96)
T ss_pred             EEEEEE---EECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEc
Confidence            445655   3578999999999999999999999877653    56777776

>PRK00194 hypothetical protein; Validated

Probab=92.23  E-value=0.35  Score=36.95  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=31.4

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS  279 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~  279 (327)
                      ...|++.|.   +.||+.+++.+.|+++|+||.-+++..
T Consensus         3 ~~~ltv~g~---DrpGiva~vt~~la~~g~nI~~~~~~~   38 (90)
T PRK00194          3 KAIITVIGK---DKVGIIAGVSTVLAELNVNILDISQTI   38 (90)
T ss_pred             eEEEEEEcC---CCCCHHHHHHHHHHHcCCCEEehhhHh
Confidence            357888884   689999999999999999999998765

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=92.11  E-value=0.39  Score=39.03  Aligned_cols=107  Identities=21%  Similarity=0.265  Sum_probs=69.1

Q ss_pred             hhHHHHHhCCCCEEEeecCCCCCCce--EEeCCCCCCcchhh-hhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHH
Q 020388          187 RTIIPVMRYDIPIVIRNIFNLSVPGI--MICRPPVDENEDEQ-IIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFG  263 (327)
Q Consensus       187 ~a~~~a~~~~I~v~I~n~~~~e~~GT--~I~~~~~~~~~~~~-~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~  263 (327)
                      .++..+.++||.++-.+..+...-|.  .|..++.  . ..+ ...   .+++++.    -.+++-.|.+.||-++++.+
T Consensus        19 ~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d--~-A~~~Lee---~gF~Vr~----~dVlaVEmeD~PG~l~~I~~   88 (142)
T COG4747          19 SVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPD--E-AHSVLEE---AGFTVRE----TDVLAVEMEDVPGGLSRIAE   88 (142)
T ss_pred             HHHHHHHHcCCceEEEEeccccCcceEEEEcCChH--H-HHHHHHH---CCcEEEe----eeEEEEEecCCCCcHHHHHH
Confidence            46677788999988776654322342  2223221  0 000 011   1223221    12344458899999999999


Q ss_pred             HHHhCCCCEEEEEecCCc-cEEEEEeccccHHHHHHHHHHH
Q 020388          264 AVKDVGANVIMISQASSE-HSVCFAVPEKEVKAVAEALESK  303 (327)
Q Consensus       264 ~L~~~gI~V~~Isq~~s~-~sIs~~V~~~d~~~av~~Lh~~  303 (327)
                      .|.+++||++.|-...++ ..--++++-+|.+++..+|.+.
T Consensus        89 vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~  129 (142)
T COG4747          89 VLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDA  129 (142)
T ss_pred             HHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHc
Confidence            999999999998755553 5556778889999999999875

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=92.05  E-value=0.45  Score=33.38  Aligned_cols=52  Identities=13%  Similarity=0.277  Sum_probs=35.9

Q ss_pred             CCCcccHHHHHHHHHHhCCCCEEEEEecCCc--cEEEEEeccccHHHHHHHHHH
Q 020388          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE--HSVCFAVPEKEVKAVAEALES  302 (327)
Q Consensus       251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~--~sIs~~V~~~d~~~av~~Lh~  302 (327)
                      +.+.||.++++.+.|+++|+||..+.+....  ....+.+.-++.+++.+.|.+
T Consensus         6 ~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~   59 (65)
T cd04882           6 VPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE   59 (65)
T ss_pred             eCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH
Confidence            5688999999999999999999877543322  223334444446667666655

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=91.88  E-value=0.88  Score=34.60  Aligned_cols=58  Identities=21%  Similarity=0.314  Sum_probs=40.1

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEecc--ccHHHHHHHHHH
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPE--KEVKAVAEALES  302 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~--~d~~~av~~Lh~  302 (327)
                      .+|++.|.   +.||+.+++.+.|+++|+||.-++|..-    ...+.+-++.  .+...+...|..
T Consensus         2 ~vl~i~g~---D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~~~~~~~~L~~~l~~   65 (88)
T cd04872           2 AVITVVGK---DRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEE   65 (88)
T ss_pred             EEEEEEcC---CCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCCCCCCHHHHHHHHHH
Confidence            46788884   6899999999999999999999987653    1234444554  234444444433

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=91.83  E-value=0.77  Score=34.15  Aligned_cols=35  Identities=26%  Similarity=0.401  Sum_probs=30.7

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS  279 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~  279 (327)
                      -+|++.|   ++.||+.+++.+.|+++|.||.-++|..
T Consensus         2 ~iltv~g---~Dr~GiVa~vs~~la~~g~nI~d~~q~~   36 (77)
T cd04893           2 LVISALG---TDRPGILNELTRAVSESGCNILDSRMAI   36 (77)
T ss_pred             EEEEEEe---CCCChHHHHHHHHHHHcCCCEEEceeeE
Confidence            3678888   4789999999999999999999988765

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=91.79  E-value=1.1  Score=33.15  Aligned_cols=56  Identities=23%  Similarity=0.365  Sum_probs=39.1

Q ss_pred             EEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc----------cEEEEEeccc-cHHHHHHHHHH
Q 020388          244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE----------HSVCFAVPEK-EVKAVAEALES  302 (327)
Q Consensus       244 IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----------~sIs~~V~~~-d~~~av~~Lh~  302 (327)
                      |++.|.   +.||+.+++.+.|+++|+||.-+++.+.+          ..+.+-+++. +..+..+.|+.
T Consensus         2 l~v~g~---D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~   68 (81)
T cd04869           2 VEVVGN---DRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEE   68 (81)
T ss_pred             EEEEeC---CCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHH
Confidence            567773   58999999999999999999999874433          2444556643 44555544544

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=91.77  E-value=0.45  Score=42.11  Aligned_cols=49  Identities=20%  Similarity=0.276  Sum_probs=39.0

Q ss_pred             cCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEecc
Q 020388          239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPE  290 (327)
Q Consensus       239 ~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~~  290 (327)
                      ....+|+++|.   +.||+.+++.+.|+++|.||.=+++..-  ++.+.++|..
T Consensus         6 ~~~lviTviG~---DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~   56 (190)
T PRK11589          6 QHYLVITALGA---DRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG   56 (190)
T ss_pred             ccEEEEEEEcC---CCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC
Confidence            35688999994   6899999999999999999998876543  5566666644

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=91.63  E-value=0.79  Score=31.48  Aligned_cols=50  Identities=18%  Similarity=0.228  Sum_probs=33.7

Q ss_pred             CCCcccHHHHHHHHHHhCCCCEEEEEecCCc-cEEEEEeccccHHHHHHHH
Q 020388          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE-HSVCFAVPEKEVKAVAEAL  300 (327)
Q Consensus       251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~-~sIs~~V~~~d~~~av~~L  300 (327)
                      +.+.||.++++.+.|.++|+||..+.-.... ..-.+.+.=++.++|.+.|
T Consensus         5 ~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l   55 (56)
T cd04889           5 VENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL   55 (56)
T ss_pred             eCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence            5678999999999999999999776643332 2222223334467776654

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=91.19  E-value=1.9  Score=30.94  Aligned_cols=53  Identities=23%  Similarity=0.354  Sum_probs=39.4

Q ss_pred             CCCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEeccccHHHHHHHHHHH
Q 020388          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALESK  303 (327)
Q Consensus       251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~~d~~~av~~Lh~~  303 (327)
                      +.+.||.++++.+.|+++|+|+..+.....    ...+.|-++..+.+.+.+.|.+.
T Consensus         8 ~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~   64 (72)
T cd04883           8 VPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRA   64 (72)
T ss_pred             ECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHC
Confidence            678899999999999999999987753322    23456666666766777777654

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=91.05  E-value=0.81  Score=34.37  Aligned_cols=51  Identities=12%  Similarity=0.126  Sum_probs=36.7

Q ss_pred             CCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEecc--ccHHHHHHHHHH
Q 020388          252 AGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPE--KEVKAVAEALES  302 (327)
Q Consensus       252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~~--~d~~~av~~Lh~  302 (327)
                      .+.||+++|+...++..|.||..++-+.++    .++.+++..  ...+++.+.|++
T Consensus        10 ~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~K   66 (76)
T PRK06737         10 HNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKK   66 (76)
T ss_pred             ecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhC
Confidence            578999999999999999999999977643    356666543  334444444443

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=90.62  E-value=1.1  Score=33.61  Aligned_cols=40  Identities=13%  Similarity=0.188  Sum_probs=33.5

Q ss_pred             CCCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEecc
Q 020388          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPE  290 (327)
Q Consensus       251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~  290 (327)
                      ..+.||+++|+.+.++..|.||..++-+..    -.++++++.+
T Consensus        10 v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~   53 (76)
T PRK11152         10 ARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS   53 (76)
T ss_pred             EECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC
Confidence            357899999999999999999999997763    2578888853

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=90.42  E-value=1.4  Score=31.11  Aligned_cols=28  Identities=25%  Similarity=0.578  Sum_probs=24.4

Q ss_pred             CCCcccHHHHHHHHHHhCCCCEEEEEec
Q 020388          251 MAGVPGTANAIFGAVKDVGANVIMISQA  278 (327)
Q Consensus       251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~  278 (327)
                      +.+.||.++++.+.+++.|++|..+.+.
T Consensus         5 ~~d~~G~L~~i~~~i~~~~~nI~~i~~~   32 (73)
T cd04886           5 LPDRPGQLAKLLAVIAEAGANIIEVSHD   32 (73)
T ss_pred             eCCCCChHHHHHHHHHHcCCCEEEEEEE
Confidence            4578999999999999999999877654

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=90.35  E-value=1.2  Score=31.87  Aligned_cols=52  Identities=13%  Similarity=0.196  Sum_probs=36.9

Q ss_pred             CCCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEecc-ccHHHHHHHHHH
Q 020388          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPE-KEVKAVAEALES  302 (327)
Q Consensus       251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~-~d~~~av~~Lh~  302 (327)
                      +.+.||.++++.+.|+++|+++..+.....    ...+.+.++. ++.+++.+.|.+
T Consensus         8 ~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L~~   64 (69)
T cd04909           8 VPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEILKE   64 (69)
T ss_pred             cCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHHHH
Confidence            568899999999999999999987654332    3345566652 356666666654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=87.54  E-value=2.2  Score=29.88  Aligned_cols=51  Identities=14%  Similarity=0.236  Sum_probs=38.0

Q ss_pred             CCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEeccccHHHHHHHHHH
Q 020388          252 AGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALES  302 (327)
Q Consensus       252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~~d~~~av~~Lh~  302 (327)
                      .+.||.++++.+.|+++|+++..+.+...    ...+.+.++..+..++++.|.+
T Consensus         7 ~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~l~~   61 (71)
T cd04903           7 KDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKK   61 (71)
T ss_pred             CCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCCCCHHHHHHHHc
Confidence            47899999999999999999988764431    2235677777777777766654

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=87.23  E-value=2.2  Score=36.72  Aligned_cols=53  Identities=15%  Similarity=0.320  Sum_probs=41.2

Q ss_pred             CCCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEec--cccHHHHHHHHHHH
Q 020388          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVP--EKEVKAVAEALESK  303 (327)
Q Consensus       251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~--~~d~~~av~~Lh~~  303 (327)
                      ..+.||+++++...|+++|+||..++-+.++    ..+.+.+.  +..++++.+.|++.
T Consensus         9 veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KL   67 (161)
T PRK11895          9 VENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKL   67 (161)
T ss_pred             EcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhcc
Confidence            4578999999999999999999988866553    34667775  34567777777774

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=86.76  E-value=3.9  Score=38.52  Aligned_cols=62  Identities=16%  Similarity=0.215  Sum_probs=43.3

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC--C--ccEEEEEecc-------ccHHHHHHHHHHHHH
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS--S--EHSVCFAVPE-------KEVKAVAEALESKFR  305 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~--s--~~sIs~~V~~-------~d~~~av~~Lh~~f~  305 (327)
                      ..+|+++|.   +.||+.+++.+.|+++|+||.-+++..  .  ...+.+.+.-       ++++++++.|-+++.
T Consensus         6 ~~vitv~G~---DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~~~l~   78 (286)
T PRK06027          6 RYVLTLSCP---DRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALAEEFE   78 (286)
T ss_pred             eEEEEEECC---CCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence            467899984   689999999999999999999988765  1  2333333433       344555555555544

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=86.39  E-value=2.5  Score=30.93  Aligned_cols=51  Identities=24%  Similarity=0.305  Sum_probs=33.9

Q ss_pred             CCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEec------cccHHHHHHHHHH
Q 020388          252 AGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVP------EKEVKAVAEALES  302 (327)
Q Consensus       252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~------~~d~~~av~~Lh~  302 (327)
                      .+.||.++++++.|+++|+|+..|..-..   .-...|.++      +.+.+++++.|.+
T Consensus         7 ~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~   66 (75)
T cd04880           7 KNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR   66 (75)
T ss_pred             CCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence            46899999999999999999999953221   222333332      3345556666554

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=86.14  E-value=2  Score=40.33  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=30.9

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS  279 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~  279 (327)
                      +|+++|   .+.||+.+++.+.|+++|+||.-++|..
T Consensus         2 ~itv~g---~D~~GIVA~Vt~~La~~g~NI~d~sq~~   35 (280)
T TIGR00655         2 ILLVSC---PDQKGLVAAISTFIAKHGANIISNDQHT   35 (280)
T ss_pred             EEEEEC---CCCCChHHHHHHHHHHCCCCEEeeeEEE
Confidence            578888   4789999999999999999999999876

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=86.03  E-value=3.5  Score=38.88  Aligned_cols=35  Identities=17%  Similarity=0.361  Sum_probs=31.7

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEec
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA  278 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~  278 (327)
                      -++|+++|   .+.||+.+++.+.|+++|+||.-++|.
T Consensus         9 ~~iitv~G---~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          9 SYVLTLAC---PSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             CEEEEEEC---CCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            46899998   478999999999999999999999984

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=85.08  E-value=5.2  Score=37.71  Aligned_cols=36  Identities=11%  Similarity=0.242  Sum_probs=32.0

Q ss_pred             CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEec
Q 020388          240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA  278 (327)
Q Consensus       240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~  278 (327)
                      +-..|+++|   .+.||+.+++.+.|+++|+||.-++|.
T Consensus         6 ~~~vitv~G---~DrpGIVa~VT~~La~~~vNI~dls~~   41 (286)
T PRK13011          6 DTFVLTLSC---PSAAGIVAAVTGFLAEHGCYITELHSF   41 (286)
T ss_pred             ceEEEEEEe---CCCCCHHHHHHHHHHhCCCCEEEeeee
Confidence            346789998   478999999999999999999999974

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=84.93  E-value=7  Score=28.93  Aligned_cols=66  Identities=11%  Similarity=0.125  Sum_probs=41.2

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--c-cEEEEEecccc----HHHHHHHHHHHHHhhhcCC
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--E-HSVCFAVPEKE----VKAVAEALESKFREALNAG  311 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~-~sIs~~V~~~d----~~~av~~Lh~~f~~~~~~~  311 (327)
                      ++.|.+   ++.||+++++..+|+.+|++|....-.+.  + .-=+|.|.+.+    .++-.+.+.+.+...+...
T Consensus         2 ~~ei~~---~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~~~~~~~~~~l~~~L~~~L~~~   74 (76)
T cd04927           2 LLKLFC---SDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRREETYDYLRAVLGDS   74 (76)
T ss_pred             EEEEEE---CCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHchh
Confidence            456665   47899999999999999999988543321  1 22245554433    2244455666555555443

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=84.69  E-value=3.4  Score=35.39  Aligned_cols=52  Identities=17%  Similarity=0.326  Sum_probs=37.9

Q ss_pred             CCCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEeccccHHHHHHHHHHHH
Q 020388          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEKEVKAVAEALESKF  304 (327)
Q Consensus       251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~~~d~~~av~~Lh~~f  304 (327)
                      ..+.||+++++.+.|+++|+||..++-+.++    ..+++.+.. + ++.++.|.+.+
T Consensus         8 ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~-d-~~~i~qi~kQl   63 (157)
T TIGR00119         8 VENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG-D-DKVLEQITKQL   63 (157)
T ss_pred             EcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC-C-HHHHHHHHHHH
Confidence            4578999999999999999999988866553    246777765 2 44555555544

acetohydroxyacid synthase is a synonym.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=83.66  E-value=6.2  Score=29.07  Aligned_cols=58  Identities=16%  Similarity=0.332  Sum_probs=40.1

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEeccccHHHHHHHHHH
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALES  302 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~~d~~~av~~Lh~  302 (327)
                      +.+.|.+   .+.||+++++.+.+++.|+||..++....    ...+.|.+.-.+.+.+-..+++
T Consensus         7 ~~l~i~~---~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~   68 (80)
T PF13291_consen    7 VRLRIEA---EDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRK   68 (80)
T ss_dssp             EEEEEEE---E--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHH
T ss_pred             EEEEEEE---EcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHH
Confidence            4566665   46899999999999999999999987653    2356666666666655555544

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=83.04  E-value=6.2  Score=27.64  Aligned_cols=41  Identities=15%  Similarity=0.296  Sum_probs=30.2

Q ss_pred             CCCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEeccc
Q 020388          251 MAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEK  291 (327)
Q Consensus       251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~~~  291 (327)
                      +.+.||.++++.+.|+++++++..+.+...   ...+.+.++..
T Consensus         7 ~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~   50 (72)
T cd04874           7 AEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGV   50 (72)
T ss_pred             eCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEecc
Confidence            357899999999999999999987765432   23355556554

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=82.98  E-value=11  Score=27.62  Aligned_cols=45  Identities=20%  Similarity=0.375  Sum_probs=33.3

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEecc
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPE  290 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~~  290 (327)
                      +|.|.|.   +.||+++++..+|+.+|+||......+.  ..--.|.|.+
T Consensus         2 ~~~v~~~---Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d   48 (74)
T cd04925           2 AIELTGT---DRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD   48 (74)
T ss_pred             EEEEEEC---CCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc
Confidence            5778874   6899999999999999999988543332  3445566643

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=82.40  E-value=5.3  Score=27.76  Aligned_cols=51  Identities=18%  Similarity=0.225  Sum_probs=34.7

Q ss_pred             CCCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEeccccHHHHHHHHH
Q 020388          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALE  301 (327)
Q Consensus       251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~~d~~~av~~Lh  301 (327)
                      ..+.+|.++++.+.|+++|+++..+.....    ...+.|.++.....++++.|.
T Consensus         6 ~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~   60 (71)
T cd04879           6 HKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELK   60 (71)
T ss_pred             ecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCCCCHHHHHHHH
Confidence            357899999999999999999987764432    223555665544444444443

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]

Probab=81.84  E-value=8.4  Score=35.70  Aligned_cols=69  Identities=22%  Similarity=0.263  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcc
Q 020388           47 SAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS  126 (327)
Q Consensus        47 s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggs  126 (327)
                      ++..++..|.++|++.....     ++-|        +...+.+.++...+  .-++.|++|-+|.+.+           
T Consensus        22 Na~~la~~L~~~G~~v~~~~-----~VgD--------~~~~I~~~l~~a~~--r~D~vI~tGGLGPT~D-----------   75 (255)
T COG1058          22 NAAFLADELTELGVDLARIT-----TVGD--------NPDRIVEALREASE--RADVVITTGGLGPTHD-----------   75 (255)
T ss_pred             hHHHHHHHHHhcCceEEEEE-----ecCC--------CHHHHHHHHHHHHh--CCCEEEECCCcCCCcc-----------
Confidence            46678999999999876643     2222        24456677777776  4678888887776665           


Q ss_pred             hHHHHHHHHHhCCce
Q 020388          127 DFSAAIMGALLRAHQ  141 (327)
Q Consensus       127 D~~A~~lA~~l~A~~  141 (327)
                      |.|+-.+|++|+-+.
T Consensus        76 DiT~e~vAka~g~~l   90 (255)
T COG1058          76 DLTAEAVAKALGRPL   90 (255)
T ss_pred             HhHHHHHHHHhCCCc
Confidence            999999999999544

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=81.39  E-value=8.3  Score=28.08  Aligned_cols=54  Identities=7%  Similarity=0.169  Sum_probs=38.1

Q ss_pred             EEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHH
Q 020388          244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE  301 (327)
Q Consensus       244 IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh  301 (327)
                      +.|.+   .+.+|+++.+...+++.|+|+..+...+. ..+.+.+.-.+...+-..++
T Consensus         3 l~I~~---~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~v~~~~~L~~li~   56 (74)
T cd04877           3 LEITC---EDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFPTIEFEKLQTLMP   56 (74)
T ss_pred             EEEEE---EccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeEecCHHHHHHHHH
Confidence            34554   36799999999999999999999986543 33666666666665444443

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=80.82  E-value=10  Score=26.88  Aligned_cols=51  Identities=20%  Similarity=0.296  Sum_probs=35.1

Q ss_pred             CCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEeccccH---HHHHHHHHH
Q 020388          252 AGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEV---KAVAEALES  302 (327)
Q Consensus       252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~~d~---~~av~~Lh~  302 (327)
                      .+.||.++++.+.|++.|+++.-+.+...    ...+.+++...+.   +.+++.|++
T Consensus         8 ~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~   65 (79)
T cd04881           8 KDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEA   65 (79)
T ss_pred             CCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHc
Confidence            47899999999999999999998875432    2346665554444   444444443

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=80.68  E-value=13  Score=27.06  Aligned_cols=31  Identities=26%  Similarity=0.342  Sum_probs=26.3

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEE
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS  276 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Is  276 (327)
                      .|.|.+   ++.||+++++.++|+.+|++|....
T Consensus         3 ~i~v~~---~Dr~gLl~~i~~~l~~~~l~I~~A~   33 (73)
T cd04900           3 EVFIYT---PDRPGLFARIAGALDQLGLNILDAR   33 (73)
T ss_pred             EEEEEe---cCCCCHHHHHHHHHHHCCCCeEEeE
Confidence            456665   4789999999999999999999854

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=80.66  E-value=5.6  Score=35.18  Aligned_cols=74  Identities=15%  Similarity=0.199  Sum_probs=46.4

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC----------ccEEEEEeccc-cHHHHHHHHHHHHHhhhcC
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS----------EHSVCFAVPEK-EVKAVAEALESKFREALNA  310 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----------~~sIs~~V~~~-d~~~av~~Lh~~f~~~~~~  310 (327)
                      ..|+++|.   +.||+..++-+.|+++||||.-.+....          ...+.+-+|.. +...+-..|.+ |..+++-
T Consensus        96 ~~v~v~G~---DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~~~l~~-l~~eL~v  171 (190)
T PRK11589         96 VWVQVEVA---DSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIEQAFKA-LCTELNA  171 (190)
T ss_pred             EEEEEEEC---CCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHHHHHHH-HHHHhCc
Confidence            67889984   6899999999999999999987663321          23455556654 23333333332 3344443


Q ss_pred             C-CCceeEEE
Q 020388          311 G-RLSQFSAS  319 (327)
Q Consensus       311 ~-~~~~~~~~  319 (327)
                      + .+++++++
T Consensus       172 d~~l~~~~~~  181 (190)
T PRK11589        172 QGSINVVNYS  181 (190)
T ss_pred             eEEEEEeecc
Confidence            3 45666553

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=80.63  E-value=6.5  Score=27.41  Aligned_cols=40  Identities=20%  Similarity=0.296  Sum_probs=30.5

Q ss_pred             CCCcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEecc
Q 020388          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPE  290 (327)
Q Consensus       251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~  290 (327)
                      ..+.||.++++...|+++++++..+.+...    ...+.|.+..
T Consensus         7 ~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   50 (72)
T cd04878           7 VENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG   50 (72)
T ss_pred             EcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence            347899999999999999999998876432    2346666655

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=80.49  E-value=1.8  Score=32.87  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=29.1

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEec
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA  278 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~  278 (327)
                      +|+++|..+  .++..+++-+.|+++|+||.-|++=
T Consensus         1 ivtvlg~~~--~a~~ia~Vs~~lA~~~~NI~~I~~l   34 (84)
T cd04871           1 IVTLLGRPL--TAEQLAAVTRVVADQGLNIDRIRRL   34 (84)
T ss_pred             CEEEEcCcC--CHHHHHHHHHHHHHcCCCHHHHHHh
Confidence            478998644  6899999999999999999988863

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=80.15  E-value=3.5  Score=29.53  Aligned_cols=50  Identities=24%  Similarity=0.413  Sum_probs=35.4

Q ss_pred             CcccHHHHHHHHHHhCCCCEEEEEecCC----ccEEEEEecc--ccHHHHHHHHHH
Q 020388          253 GVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPE--KEVKAVAEALES  302 (327)
Q Consensus       253 ~~~~v~a~if~~L~~~gI~V~~Isq~~s----~~sIs~~V~~--~d~~~av~~Lh~  302 (327)
                      +.||++.|+...+...|.||..++-+.+    -..+++++..  ...+.+.+.|++
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhc
Confidence            4689999999999999999999987663    3566666665  344555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	327
2hmf_A	469	Structure Of A Threonine Sensitive Aspartokinase Fr		9e-44
2hmf_A	469	Structure Of A Threonine Sensitive Aspartokinase Fr		5e-05
3c1n_C	473	Crystal Structure Of Allosteric Inhibition Threonin		1e-43
3c1n_C	473	Crystal Structure Of Allosteric Inhibition Threonin		5e-05
2j0x_A	449	Crystal Structure Of E. Coli Aspartokinase Iii In C		1e-26
2cdq_A	510	Crystal Structure Of Arabidopsis Thaliana Aspartate		8e-25
3tvi_A	446	Crystal Structure Of Clostridium Acetobutylicum Asp		6e-18
3l76_A	600	Crystal Structure Of Aspartate Kinase From Synechoc		2e-13
3ab4_A	421	Crystal Structure Of Feedback Inhibition Resistant		3e-13
3aaw_A	421	Crystal Structure Of Aspartate Kinase From Coryneba		3e-13
2ij9_A	219	Crystal Structure Of Uridylate Kinase From Archaeog		4e-04
3ek5_A	243	Unique Gtp-Binding Pocket And Allostery Of Ump Kina		7e-04

>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From Methanococcus Jannaschii Complexed With Mg-Adp And Aspartate Length = 469

Iteration: 1
 Score =  173 bits (439), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 103/260 (39%), Positives = 143/260 (55%), Gaps = 13/260 (5%)
Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  T    D+++  GE  S+ +L+  +R  G     ++  E  I+   +         E 
Sbjct: 114 GELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV 173
Query: 89  EKRLEKWFSQS--PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
           ++RL     +   P    + TGFI +T +   TTL R GSD+SAA++G  L A  + IWT
Sbjct: 174 KERLLPLLKEGIIP----VVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 229
Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DV GVY+ DPR V  A  +  LSY EA E++YFGA VLHPRTI P M   IPI+++N F 
Sbjct: 230 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 289
Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
               G +I         D ++ DS VK  +TI N+AL+N+ G GM GV GTA  IF A+ 
Sbjct: 290 PESEGTLITN-------DMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALG 342
Query: 267 DVGANVIMISQASSEHSVCF 286
           +   NVI+ISQ SSE ++  
Sbjct: 343 EEEVNVILISQGSSETNISL 362

>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From Methanococcus Jannaschii Complexed With Mg-Adp And Aspartate Length = 469

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCF 286
           ++ +++V G GM G  G A  IF AV + GAN+ MI+Q SSE ++ F
Sbjct: 402 DVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISF 448

>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition Threonine-Sensitive Aspartokinase From Methanococcus Jannaschii With L-Threonine Length = 473

Iteration: 1
 Score =  173 bits (438), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/260 (39%), Positives = 143/260 (55%), Gaps = 13/260 (5%)
Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  T    D+++  GE  S+ +L+  +R  G     ++  E  I+   +         E 
Sbjct: 115 GELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV 174
Query: 89  EKRLEKWFSQS--PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
           ++RL     +   P    + TGFI +T +   TTL R GSD+SAA++G  L A  + IWT
Sbjct: 175 KERLLPLLKEGIIP----VVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 230
Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DV GVY+ DPR V  A  +  LSY EA E++YFGA VLHPRTI P M   IPI+++N F 
Sbjct: 231 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 290
Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
               G +I         D ++ DS VK  +TI N+AL+N+ G GM GV GTA  IF A+ 
Sbjct: 291 PESEGTLITN-------DMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALG 343
Query: 267 DVGANVIMISQASSEHSVCF 286
           +   NVI+ISQ SSE ++  
Sbjct: 344 EEEVNVILISQGSSETNISL 363

>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition Threonine-Sensitive Aspartokinase From Methanococcus Jannaschii With L-Threonine Length = 473

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCF 286
           ++ +++V G GM G  G A  IF AV + GAN+ MI+Q SSE ++ F
Sbjct: 403 DVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISF 449

>pdb|2J0X|A Chain A, Crystal Structure Of E. Coli Aspartokinase Iii In Complex With Lysine And Aspartate (T-State) Length = 449

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 14/250 (5%)
Query: 34  SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLE 93
           + TD +V HGEL S  +   ++R+  +  +W D R+V+  N     + +PD +   +   
Sbjct: 109 ALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTN-DRFGRAEPDIAALAELAA 167
Query: 94  KWFSQSPSNTIIAT-GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
                  +  ++ T GFI S      TTL R GSD++AA++   L A +V IWTDV G+Y
Sbjct: 168 LQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIY 227
Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
           + DPR VS A  +  +++ EA EM+ FGA VLHP T++P +R DIP+ + +  +    G 
Sbjct: 228 TTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGT 287
Query: 213 MICRPPVDENEDEQIIDSPV-KGFATIDNLALVNVEGTGMAGVPGTANAIFG--AVKDVG 269
           ++C      N+ E   + P+ +  A   N  L+ +    M    G    +FG  A  ++ 
Sbjct: 288 LVC------NKTE---NPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNIS 338
Query: 270 ANVIMISQAS 279
            ++I  S+ S
Sbjct: 339 VDLITTSEVS 348

>pdb|2CDQ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Aspartate Kinase Complexed With Lysine And S-Adenosylmethionine Length = 510

Iteration: 1
 Score =  110 bits (276), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 126/254 (49%), Gaps = 14/254 (5%)
Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNP---TSSNQVDPDFSESEKRLE 93
           D++V  GE  S ++ AA +   G+  +  D  E+  +     T+ + ++  +    KRL 
Sbjct: 141 DYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLY 200
Query: 94  KWFSQSPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
             +   P+  I+ TGF+         TTL R GSD +A  +G  L   ++ +W DVDGV 
Sbjct: 201 DDWMHDPAVPIV-TGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVL 259
Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
           + DP     A  +  L++ EA E++YFGA VLHP+++ P    +IP+ ++N +N   PG 
Sbjct: 260 TCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGT 319
Query: 213 MICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANV 272
           +I +          +  S +       N+ ++++  T M G  G    +F   +++G +V
Sbjct: 320 IITKT-------RDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISV 372
Query: 273 IMISQASSEHSVCF 286
            ++  A+SE S+  
Sbjct: 373 DVV--ATSEVSISL 384

>pdb|3TVI|A Chain A, Crystal Structure Of Clostridium Acetobutylicum Aspartate Kinase (Caak): An Important Allosteric Enzyme For Industrial Amino Acids Production Length = 446

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 16/226 (7%)
Query: 22  FLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQV 81
           +L  V       + +D+    GE  +  +LA       ++ +++D  EV+  + +     
Sbjct: 95  YLEKVKKNIENGASSDYAASRGEYLNGVILAKY-----LNAEFIDAAEVIFFDKSGCFDE 149
Query: 82  DPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQ 141
              +   EK  EK  S    N  +  GF  S+ +    T  R GSD + +I+ A + A  
Sbjct: 150 KKSY---EKIKEKVLS---CNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNADL 203
Query: 142 VTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201
              WTDV G   ADPR V     +  +SY+E  E+SY GA VLH   I PV    IPI I
Sbjct: 204 YENWTDVSGFLXADPRIVENPKTISKISYKELRELSYXGATVLHEEAIFPVKDSGIPINI 263
Query: 202 RNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVE 247
           +N    S PG +I       +  ++I    + G A   N  ++ +E
Sbjct: 264 KNTNKPSDPGTLIL-----SDTHKEINLGTITGIAGKKNFTVIAIE 304

>pdb|3L76|A Chain A, Crystal Structure Of Aspartate Kinase From Synechocystis Length = 600

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 91  RLEKWFSQSPSNTIIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           RLE    +     ++  GF  I+S      TTL R GSD SA  + A L+A    I+TDV
Sbjct: 120 RLEHHLREG--KVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDV 177
Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
            G+ + DPR V EA ++  ++  E  E++  GA VLHPR +     Y IP+V+R+ ++  
Sbjct: 178 PGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWS-D 236
Query: 209 VPGIMICRPPV 219
            PG  +  PPV
Sbjct: 237 EPGTKVVAPPV 247

>pdb|3AB4|A Chain A, Crystal Structure Of Feedback Inhibition Resistant Mutant Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 421

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 119 TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY 178
           TTL R GSD +A  + A L A    I++DVDGVY+ADPR V  A  L  LS++E  E++ 
Sbjct: 147 TTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAA 206
Query: 179 FGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATI 238
            G+ +L  R++     +++P+ +R+ ++ + PG +I        ED  + ++ + G AT 
Sbjct: 207 VGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIA----GSMEDIPVEEAVLTGVATD 261
Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
            + A V V   G++  PG A  +F A+ D   N+ M+ Q
Sbjct: 262 KSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQ 298

>pdb|3AAW|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 421

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 119 TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY 178
           TTL R GSD +A  + A L A    I++DVDGVY+ADPR V  A  L  LS++E  E++ 
Sbjct: 147 TTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAA 206
Query: 179 FGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATI 238
            G+ +L  R++     +++P+ +R+ ++ + PG +I        ED  + ++ + G AT 
Sbjct: 207 VGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIA----GSMEDIPVEEAVLTGVATD 261
Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
            + A V V   G++  PG A  +F A+ D   N+ M+ Q
Sbjct: 262 KSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQ 298

>pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus Fulgidus Length = 219

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 43/167 (25%)
Query: 10  ELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTRE 69
           +L+ E+I+S            A+E+F D++                   GI    ++   
Sbjct: 43  KLAREYIKSAREL-------GASETFCDYI-------------------GIAATRLNAML 76
Query: 70  VLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFS 129
           ++   P+++ +V  DF E+E+ L K +       ++  G           T     +D +
Sbjct: 77  LISAIPSAAKKVPVDFMEAEE-LSKLY-----RVVVMGG-----------TFPGHTTDAT 119
Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176
           AA++   ++A      T+VDGVYSADP+  + AV    LS Q+  E+
Sbjct: 120 AALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEI 166

>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From A Gram- Negative Phytopathogen Bacterium Length = 243

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 134 GALLRAHQVTI-----WTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRT 188
           GA LRA ++        T VDGVY  DP+K S+AV   +L+Y E       G  V+    
Sbjct: 148 GAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQ---GLEVMDTAA 204
Query: 189 IIPVMRYDIPIVIRNIFNLSVPGIMI 214
                  D+P+    IF +S PG+++
Sbjct: 205 FALARDSDLPL---RIFGMSEPGVLL 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	327
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	1e-116
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	4e-13
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	1e-106
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	4e-13
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	1e-102
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	1e-100
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	4e-11
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	9e-39
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	5e-05
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	2e-38
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	3e-06
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	1e-05
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	2e-04
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	2e-16
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	2e-13
2brx_A	244	Uridylate kinase; UMP kinase, amino acid kinase, p	3e-11
2j4j_A	226	Uridylate kinase; transferase, nucleoside monophos	4e-11
4a7w_A	240	Uridylate kinase; transferase; HET: GTP; 1.80A {He	9e-11
2ogx_B	270	Molybdenum storage protein subunit beta; open alph	6e-10
2ogx_A	276	Molybdenum storage protein subunit alpha; open alp	2e-09
2ij9_A	219	Uridylate kinase; structural genomics, protein str	3e-09
3nwy_A	281	Uridylate kinase; allosterically activated form, A	5e-09
2va1_A	256	Uridylate kinase; UMPK, transferase, pyrimidine bi	2e-08
3ek6_A	243	Uridylate kinase; UMPK unique GTP B site, alloster	2e-08
1ybd_A	239	Uridylate kinase; alpha/beta/alpha fold, hexamer,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2a1f_A	247	Uridylate kinase; PYRH, structural genomics, PSI,	3e-07
1z9d_A	252	Uridylate kinase, UK, UMP kinase; structural genom	3e-07
2jjx_A	255	Uridylate kinase, UMP kinase; structural genomics,	2e-06
3ll9_A	269	Isopentenyl phosphate kinase; mevalonate biosynthe	8e-06
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	4e-05
3ll5_A	249	Gamma-glutamyl kinase related protein; alternate m	4e-05
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	3e-04
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	3e-04

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Length = 449

 Score =  318 bits (816), Expect = e-106
 Identities = 82/290 (28%), Positives = 135/290 (46%), Gaps = 13/290 (4%)

Query: 23  LSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVD 82
           L+   +   + + TD +V HGEL S  +   ++R+  +  +W D R+V+  N       +
Sbjct: 98  LAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGR-AE 156

Query: 83  PDFSESEKRLEKWFSQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQ 141
           PD +   +          +  + I  GFI S      TTL R GSD++AA++   L A +
Sbjct: 157 PDIAALAELAALQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASR 216

Query: 142 VTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201
           V IWTDV G+Y+ DPR VS A  +  +++ EA EM+ FGA VLHP T++P +R DIP+ +
Sbjct: 217 VDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFV 276

Query: 202 RNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAI 261
            +  +    G ++C    +            +  A   N  L+ +    M    G    +
Sbjct: 277 GSSKDPRAGGTLVCNKTENPP--------LFRALALRRNQTLLTLHSLNMLHSRGFLAEV 328

Query: 262 FGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL-ESKFREALNA 310
           FG +     +V +I+  +SE SV   +      +  + L        L+A
Sbjct: 329 FGILARHNISVDLIT--TSEVSVALTLDTTGSTSTGDTLLTQSLLMELSA 376

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Length = 449

 Score = 68.8 bits (169), Expect = 4e-13
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVA 297
            + LALV + G  ++   G    +FG ++    N+ MI   +S H++CF VP ++ + V 
Sbjct: 383 EEGLALVALIGNDLSKACGVGKEVFGVLEPF--NIRMICYGASSHNLCFLVPGEDAEQVV 440

Query: 298 EALESKF 304
           + L S  
Sbjct: 441 QKLHSNL 447

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} Length = 446

 Score =  306 bits (786), Expect = e-102
 Identities = 69/294 (23%), Positives = 121/294 (41%), Gaps = 18/294 (6%)

Query: 21  NFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ 80
            +L  V       + +D+    GE  +  +LA       ++ +++D  EV+  + +    
Sbjct: 94  YYLEKVKKNIENGASSDYAASRGEYLNGVILAKY-----LNAEFIDAAEVIFFDKSGC-- 146

Query: 81  VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAH 140
              D  +S +++++       N  +  GF  S+ +    T  R GSD + +I+ A + A 
Sbjct: 147 --FDEKKSYEKIKEKVL--SCNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNAD 202

Query: 141 QVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIV 200
               WTDV G   ADPR V     +  +SY+E  E+SY GA VLH   I PV    IPI 
Sbjct: 203 LYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPIN 262

Query: 201 IRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANA 260
           I+N    S PG +I      E          + G A   N  ++ +E   +    G    
Sbjct: 263 IKNTNKPSDPGTLILSDTHKEIN-----LGTITGIAGKKNFTVIAIEKALLNSEVGFCRK 317

Query: 261 IFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLS 314
           I   ++  G +   +   S   SV   + + ++    + +  + ++  N   + 
Sbjct: 318 ILSILEMYGVSFEHMP--SGVDSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIE 369

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510

 Score =  304 bits (780), Expect = e-100
 Identities = 67/290 (23%), Positives = 127/290 (43%), Gaps = 12/290 (4%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
              T    D++V  GE  S ++ AA +   G+  +  D  E+  +        D   +  
Sbjct: 133 KELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATY 192

Query: 89  EKRLEKWFSQ--SPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIW 145
               ++ +          I TGF+         TTL R GSD +A  +G  L   ++ +W
Sbjct: 193 PAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVW 252

Query: 146 TDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF 205
            DVDGV + DP     A  +  L++ EA E++YFGA VLHP+++ P    +IP+ ++N +
Sbjct: 253 KDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSY 312

Query: 206 NLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAV 265
           N   PG +I        +   +  S +       N+ ++++  T M G  G    +F   
Sbjct: 313 NPKAPGTIIT-------KTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIF 365

Query: 266 KDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ 315
           +++G +V +++  +SE S+   +   ++ +     +          +++ 
Sbjct: 366 EELGISVDVVA--TSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAV 413

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510

 Score = 62.4 bits (152), Expect = 4e-11
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVA 297
           +   A++++ G  +          F  +   G NV MISQ +S+ ++ F V E E +   
Sbjct: 417 LKGRAIISLIG-NVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCV 475

Query: 298 EALESKFREA 307
           +AL   F E+
Sbjct: 476 QALHKSFFES 485

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421

 Score =  140 bits (356), Expect = 9e-39
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 16/218 (7%)

Query: 104 IIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSE 161
            I  GF  +     ++ TTL R GSD +A  + A L A    I++DVDGVY+ADPR V  
Sbjct: 131 CIVAGFQGVNKETRDV-TTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPN 189

Query: 162 AVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE 221
           A  L  LS++E  E++  G+ +L  R++     +++P+ +R+ ++ + PG +I       
Sbjct: 190 AQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIA----GS 244

Query: 222 NEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE 281
            ED  + ++ + G AT  + A V V   G++  PG A  +F A+ D   N+ M+ Q    
Sbjct: 245 MEDIPVEEAVLTGVATDKSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQNVFS 302

Query: 282 HS-----VCFAVPEKEVKAVAEALESKFREALNAGRLS 314
                  + F  P  + +   E L+ K +   N   + 
Sbjct: 303 VEDGTTDITFTCPRSDGRRAMEILK-KLQVQGNWTNVL 339

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAE 298
           D +  V++ G GM   PG       A++DV  N+ +IS  +SE  +   + E ++ A A 
Sbjct: 342 DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAAR 399

Query: 299 ALESKF 304
           AL  +F
Sbjct: 400 ALHEQF 405

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score =  142 bits (361), Expect = 2e-38
 Identities = 62/228 (27%), Positives = 104/228 (45%), Gaps = 10/228 (4%)

Query: 104 IIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSE 161
           ++  GF  I+S      TTL R GSD SA  + A L+A    I+TDV G+ + DPR V E
Sbjct: 131 VVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPE 190

Query: 162 AVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE 221
           A ++  ++  E  E++  GA VLHPR +     Y IP+V+R+ ++   PG  +  PPV  
Sbjct: 191 AQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWS-DEPGTKVVAPPVQN 249

Query: 222 NEDEQIIDSP-VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS 280
                +  +  V G     + A V +    +   PG A+ +F  +     ++ +I Q+  
Sbjct: 250 RSLVGLEIAKAVDGVEYDADQAKVAL--LRVPDRPGVASKLFRDIAQQQVDIDLIIQSIH 307

Query: 281 EHS---VCFAVPEKEVKAVAEALESKFREALNAGRLSQFSASILSQDK 325
           + +   + F V +  +             AL +   +   A I+ +  
Sbjct: 308 DGNSNDIAFTVVKDLLNTAEAVTS-AIAPALRSYPEADQEAEIIVEKG 354

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 11/108 (10%)

Query: 215 CRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274
                 +N+ +      V+G A   + A + +    +   PG A  +F A+ +   +V M
Sbjct: 418 VTLSPPKNQTDTSHLPAVRGVALDQDQAQIAI--RHVPDRPGMAAQLFTALAEANISVDM 475

Query: 275 ISQASSEHS--------VCFAVPEKEVKAVAEALESKFREALNAGRLS 314
           I Q+             + F V E +       L+    +      + 
Sbjct: 476 IIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQ-PLIKDWLDAAIV 522

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAE 298
             +A + + G GM G PG A  +F  + DVG N+ MIS  +SE  V   + +++      
Sbjct: 353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TSEVKVSCVIDQRDADRAIA 410

Query: 299 ALESKFRE 306
           AL + F  
Sbjct: 411 ALSNAFGV 418

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAE 298
             +A V++ G+GM G PG A   F A+     N+ MI+  +SE  +   VP+       +
Sbjct: 525 KAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TSEIKISCVVPQDRGVDALK 582

Query: 299 ALESKF 304
           A  S F
Sbjct: 583 AAHSAF 588

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis} Length = 157

 Score = 74.5 bits (184), Expect = 2e-16
 Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAV 288
              +K  A  D + ++ V+ +           +F   +     V M++ +    S+    
Sbjct: 6   KDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSEVGVSLTID- 64

Query: 289 PEKEVKAVAEALE 301
            +K +  +  AL 
Sbjct: 65  NDKNLPDIVRALS 77

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis} Length = 157

 Score = 66.5 bits (163), Expect = 2e-13
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVA 297
             ++ ++ + G       G    I  A+K V   V MIS   S ++V   V  ++ K   
Sbjct: 85  DKDMVIICIVGDMEWDNVGFEARIINALKGV--PVRMISYGGSNYNVSVLVKAEDKKKAL 142

Query: 298 EALESKF 304
            AL +K 
Sbjct: 143 IALSNKL 149

>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 13/96 (13%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D  AA++   L+A  + + T+VDGVY+ADP+K   A  ++ +  +E  E+   G  +   
Sbjct: 140 DAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIV--GKGIEKA 197

Query: 187 RTIIPV--------MRYDIPIVIRNIFNLSVPGIMI 214
            +   +         R  I  +   +        + 
Sbjct: 198 GSSSVIDPLAAKIIARSGIKTI---VIGKEDAKDLF 230

>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 12/94 (12%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +   AA++     +  + + T+VDGVY  DPR  ++  ++  L+ Q+  ++     +V  
Sbjct: 119 TAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQ- 177

Query: 186 PRTIIPV--------MRYDIPIVIRNIFNLSVPG 211
             T   +         R  I ++   + N     
Sbjct: 178 AGTYELLDPLAIKIVERSKIRVI---VMNYRKLN 208

>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* Length = 240

 Score = 60.3 bits (146), Expect = 9e-11
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +A +    + +  +   T VDG+Y  DP K  +A  L TLSY +A         V+ 
Sbjct: 144 TDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMD 200

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
              I       +PIV   + N+   G
Sbjct: 201 DTAISLAKDNKLPIV---VCNMFKKG 223

>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270

 Score = 57.9 bits (140), Expect = 6e-10
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D    ++       Q+    D DG+Y+A+P+   +A  +  +S  E         ++L  
Sbjct: 170 DAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKG-LHDSILEF 228

Query: 187 R--TIIPVMRYDIPIVIRNIFNLSVPG 211
               ++   ++   +    + N  VPG
Sbjct: 229 PVLDLLQSAQHVREVQ---VVNGLVPG 252

>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 102 NTIIATGFIASTPDNIPTTLKRDGS-DFSAAIMGALLRAHQVTIWTDVDGVYSADPR--K 158
             ++ + F        P +       D  A ++     A  +TI  +VDG+Y+ADP    
Sbjct: 145 RAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPD 204

Query: 159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
             +A  L   S  +  +             ++   R+   +    + N  VPG
Sbjct: 205 RGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQ---VVNGLVPG 254

>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 Length = 219

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM------SYF 179
           +D +AA++   ++A      T+VDGVYSADP+  + AV    LS Q+  E+         
Sbjct: 116 TDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAG 175

Query: 180 GANVLHPRTIIPVMRYDIPIVI 201
              V+       + R  I   +
Sbjct: 176 TNVVIDLLAAKIIERSKIKTYV 197

>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281

 Score = 55.4 bits (133), Expect = 5e-09
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +AA     + A  V +   VDGV++ DPR   EA +L  +S++E  +    G  V  
Sbjct: 185 TDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDR---GLRVAD 241

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
                  M   +PI+   +FNL   G
Sbjct: 242 ATAFSLCMDNGMPIL---VFNLLTDG 264

>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256

 Score = 53.8 bits (129), Expect = 2e-08
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 126 SDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVL 184
           +D  AAI  A   +  + +  + VDGVY +DP+    A     +++  A         V+
Sbjct: 159 TDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---NLKVM 215

Query: 185 HPRTIIPVMRYDIPIVIRNIFNLSVPG 211
               +      +I ++   +FN+  P 
Sbjct: 216 DATALALCQENNINLL---VFNIDKPN 239

>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 37/179 (20%), Positives = 60/179 (33%), Gaps = 27/179 (15%)

Query: 33  ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRL 92
               D +     + +A  +   + K G                 S+ +++    +  +R 
Sbjct: 73  RVTGDHMGMLATVINALAMQDALEKLGAKV-----------RVMSAIKINDVCEDFIRRR 121

Query: 93  EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
                +     I A G                  D  AA+    + A  +   T VDGVY
Sbjct: 122 AIRHLEKGRIAIFAAGTGNPFFTT----------DSGAALRAIEIGADLLLKATKVDGVY 171

Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
             DP+K S+AV   +L+Y E       G  V+           D+P+    IF +S PG
Sbjct: 172 DKDPKKHSDAVRYDSLTYDEVIMQ---GLEVMDTAAFALARDSDLPLR---IFGMSEPG 224

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239

 Score = 51.4 bits (123), Expect = 8e-08
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +AA+ GA +    +   T+VDGVY+ADP+K   A    T+++ EA         V+ 
Sbjct: 143 TDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---NLKVMD 199

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
                      + IV   +F ++  G
Sbjct: 200 ATAFALCRERKLNIV---VFGIAKEG 222

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 29/206 (14%), Positives = 62/206 (30%), Gaps = 60/206 (29%)

Query: 44  ELWSAQMLAAVVRKNGIDCK-WMDTREVLIVN--------PTSSNQVDPDFSESEKR--L 92
            + +A+   A      + CK  + TR   + +          S +      +  E +  L
Sbjct: 252 NVQNAKAWNAF----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 93  EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTI--WTDVDG 150
            K+                  P ++P  +    +    +I+   +R    T   W  V+ 
Sbjct: 308 LKYLDCR--------------PQDLPREVL-TTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 151 VYSADPRKVSEAVILRTLSYQEAWEM-SYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSV 209
                  K++  +I  +L+  E  E    F          + V      I          
Sbjct: 353 ------DKLTT-IIESSLNVLEPAEYRKMFDR--------LSVFPPSAHI---------- 387

Query: 210 PGIMICR--PPVDENEDEQIIDSPVK 233
           P I++      V +++   +++   K
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHK 413

>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +A + G  + A  V   T VDGVY  DP K  +A + + LSY E  +       V+ 
Sbjct: 144 TDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMD 200

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
                    + +PI    +FN+  PG
Sbjct: 201 LSAFTLARDHGMPIR---VFNMGKPG 223

>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Length = 252

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 126 SDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVL 184
           +D +AA+  A + A  + +  + VDGVY+ADP+K + AV    L++ E  +    G  ++
Sbjct: 143 TDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKR---GLKIM 199

Query: 185 HPRTIIPVMRYDIPIVIRNIFNLSVPG 211
                   M  DI +V   +FN++  G
Sbjct: 200 DATASTLSMDNDIDLV---VFNMNEAG 223

>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Length = 255

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 126 SDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVL 184
           +D+ +      + +  + +    VDGV+++DP+    A + R L+Y +          V+
Sbjct: 149 TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVM 205

Query: 185 HPRTIIPVMRYDIPIVIRNIFNLSVPG 211
               ++    Y++P     +FN   PG
Sbjct: 206 DQAALLLARDYNLPAH---VFNFDEPG 229

>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 269

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176
                  L   +V + TDVDGVY+ +P+K  +A +L  +   +  E 
Sbjct: 164 INHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLES 210

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58} Length = 167

 Score = 42.5 bits (101), Expect = 4e-05
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 219 VDENED-EQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
            +E+++ E+     V G A   N A +NV   G+   PG A  I GAV D    V MI Q
Sbjct: 5   FEEDDNMERAA---VTGIAFDKNQARINV--RGVPDKPGVAYQILGAVADANIEVDMIIQ 59

Query: 278 ASSEHS---VCFAVPEKEVKAVAEALESKFREALNAGRLS 314
                      F VP  + K   E L  + ++++ A  + 
Sbjct: 60  NVGSEGTTDFSFTVPRGDYKQTLEILS-ERQDSIGAASID 98

>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE-MSYFG 180
            A M  LL+       TDVDG+YS DP++  +AV+LR +     ++ +    
Sbjct: 151 MADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDTNITFDRVQNDV 202

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis} Length = 181

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHS-----VCF 286
           + G A   + A V +   G+  +PG A  +F AV D   N+ M+ Q  S+       + F
Sbjct: 7   LTGVAHDRSEAKVTI--VGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITF 64

Query: 287 AVPEKEVKAVAEALESKFREALNAGRLS 314
                   A  E L+   R  +   +L 
Sbjct: 65  TCSRDVGPAAVEKLD-SLRNEIGFSQLL 91

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B* Length = 178

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHS-----VCF 286
           + G AT  + A V V   G++  PG A  +F A+ D   N+ M+ Q  S        + F
Sbjct: 6   LTGVATDKSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITF 63

Query: 287 AVPEKEVKAVAEALESKFREALNAGRLS 314
             P  + +   E L+ K +   N   + 
Sbjct: 64  TCPRSDGRRAMEILK-KLQVQGNWTNVL 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	327
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	100.0
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	100.0
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	100.0
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	100.0
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	100.0
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	100.0
1ybd_A	239	Uridylate kinase; alpha/beta/alpha fold, hexamer,	99.91
2a1f_A	247	Uridylate kinase; PYRH, structural genomics, PSI,	99.91
4a7w_A	240	Uridylate kinase; transferase; HET: GTP; 1.80A {He	99.91
2jjx_A	255	Uridylate kinase, UMP kinase; structural genomics,	99.91
2j4j_A	226	Uridylate kinase; transferase, nucleoside monophos	99.9
3ek6_A	243	Uridylate kinase; UMPK unique GTP B site, alloster	99.9
2j5v_A	367	Glutamate 5-kinase; proline biosynthesis, gamma gl	99.9
1z9d_A	252	Uridylate kinase, UK, UMP kinase; structural genom	99.89
2ap9_A	299	NAG kinase, acetylglutamate kinase, AGK; structura	99.89
3ll9_A	269	Isopentenyl phosphate kinase; mevalonate biosynthe	99.88
3nwy_A	281	Uridylate kinase; allosterically activated form, A	99.88
2ogx_A	276	Molybdenum storage protein subunit alpha; open alp	99.87
2egx_A	269	Putative acetylglutamate kinase; struc genomics, N	99.87
2brx_A	244	Uridylate kinase; UMP kinase, amino acid kinase, p	99.87
2ako_A	251	Glutamate 5-kinase; structural genomics, PSI, prot	99.87
2va1_A	256	Uridylate kinase; UMPK, transferase, pyrimidine bi	99.86
3d40_A	286	FOMA protein; fosfomycin, antibiotic resistance, k	99.85
2ij9_A	219	Uridylate kinase; structural genomics, protein str	99.84
2rd5_A	298	Acetylglutamate kinase-like protein; protein-prote	99.84
2v5h_A	321	Acetylglutamate kinase; amino-acid biosynthesis, t	99.83
1gs5_A	258	Acetylglutamate kinase; carbamate kinase, amino ac	99.83
2ogx_B	270	Molybdenum storage protein subunit beta; open alph	99.82
2bty_A	282	Acetylglutamate kinase; N-acetyl-L-glutamate kinas	99.82
3ll5_A	249	Gamma-glutamyl kinase related protein; alternate m	99.8
3l86_A	279	Acetylglutamate kinase; ARGB, amino-acid biosynthe	99.8
2buf_A	300	Acetylglutamate kinase; acetyglutamate kinase, ADP	99.79
1e19_A	314	Carbamate kinase-like carbamoylphosphate synthetas	99.77
3k4o_A	266	Isopentenyl phosphate kinase; small molecule kinas	99.73
2e9y_A	316	Carbamate kinase; transferase, structural genomics	99.7
3zzh_A	307	Acetylglutamate kinase; transferase, arginine bios	99.69
3d2m_A	456	Putative acetylglutamate synthase; protein-COA-Glu	99.66
4ab7_A	464	Protein Arg5,6, mitochondrial; transferase, argini	99.63
2we5_A	310	Carbamate kinase 1; arginine catabolism, arginine	99.63
3kzf_A	317	Carbamate kinase; arginine dihydrolase pathway, gi	99.6
3s6g_A	460	N-acetylglutamate kinase / N-acetylglutamate SYNT;	99.58
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	99.53
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	99.49
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	99.48
3s6k_A	467	Acetylglutamate kinase; synthase, transferase; 2.8	99.47
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	99.46
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	99.39
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	99.38
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	99.34
4axs_A	332	Carbamate kinase; oxidoreductase; 2.50A {Mycoplasm	99.29
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	99.22
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	99.18
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	99.12
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	99.06
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	99.04
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	98.99
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	98.92
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	98.73
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	98.33
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	98.14
2f06_A	144	Conserved hypothetical protein; structural genomic	98.07
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	97.38
2f06_A	144	Conserved hypothetical protein; structural genomic	96.56
1zhv_A	134	Hypothetical protein ATU0741; NESG, ATR8, structur	95.09
1zvp_A	133	Hypothetical protein VC0802; structural genomics,	94.35
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	93.33
1u8s_A	192	Glycine cleavage system transcriptional repressor,	91.75
2nyi_A	195	Unknown protein; protein structure initiative, PSI	88.53
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	87.92
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	87.8
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	86.32
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	83.8
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	80.67

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=100.00  E-value=1.8e-55  Score=439.14  Aligned_cols=289  Identities=28%  Similarity=0.438  Sum_probs=251.3

Q ss_pred             HHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCC---ch
Q 020388           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---FS   86 (327)
Q Consensus        15 ~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~---~~   86 (327)
                      .++..++.|++++.     ++.+++.+|+++|+||++|+.+++.+|+++|++++++++.++.+.+++.+++..++   +.
T Consensus       114 ~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l~t~~~~~~~~i~~~~~~  193 (510)
T 2cdq_A          114 VILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYP  193 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHHH
T ss_pred             HHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHeeEEEecCCCccchhhHHHH
Confidence            46667777777643     57889999999999999999999999999999999999999955566666655443   22


Q ss_pred             HHHHHHHH-HhhcCCCceEEecCceecCC-CCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeE
Q 020388           87 ESEKRLEK-WFSQSPSNTIIATGFIASTP-DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (327)
Q Consensus        87 ~~~~~i~~-~l~~~~~~vpVv~Gfi~~~~-~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~  164 (327)
                      ...+.+.+ +++  .+.|||++||+|.++ +|.++|+||||||++|+++|.+|+|+++++||||||||++||+.+|+|++
T Consensus       194 ~~~~~l~~~Ll~--~g~IpVv~Gf~g~~~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~i~TDVdGVytaDPr~v~~A~~  271 (510)
T 2cdq_A          194 AVAKRLYDDWMH--DPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATP  271 (510)
T ss_dssp             HHHHHHHHHHHH--SCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCB
T ss_pred             HHHHHHHHHHHh--CCcEEEEeCccccCCCCCceEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCcCCCCCCCCCCCEE
Confidence            23455554 556  789999999999998 99999999999999999999999999999999999999999999999999


Q ss_pred             EeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCC-CC-------------------cch
Q 020388          165 LRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPV-DE-------------------NED  224 (327)
Q Consensus       165 i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~-~~-------------------~~~  224 (327)
                      |++++|+|+.+|+++|+++|||+|+++|+++|||++|+|+++|+.+||+|.++.. +.                   ..|
T Consensus       272 I~~Is~~E~~ela~~Ga~vmh~~a~~~a~~~gIpv~I~n~~~p~~~GT~I~~~~~~~~~~v~gIa~~~~~~~I~i~~~~m  351 (510)
T 2cdq_A          272 VPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRM  351 (510)
T ss_dssp             CCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEESCCCCTTCCEEEEEEEEEEEEEEEECGGG
T ss_pred             ecEeCHHHHHHHHhcCcchhHHHHHHHHHHCCCeEEEEccCcCCCCCeEEeccccccccccccccccCCeEEEEEEcCCC
Confidence            9999999999999999999999999999999999999999999999999986421 00                   000


Q ss_pred             -------------------------------------hhh---------------hcCCeeeEEeecCeeEEEeecCCCC
Q 020388          225 -------------------------------------EQI---------------IDSPVKGFATIDNLALVNVEGTGMA  252 (327)
Q Consensus       225 -------------------------------------~~~---------------~~~~v~~i~~~~~la~IsIvG~~~~  252 (327)
                                                           .+.               ..+.+..+.+.+++|+|++||. |+
T Consensus       352 ~~~~g~~~~if~~la~~~I~vd~I~sse~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~v~~~~~~a~VsiVG~-m~  430 (510)
T 2cdq_A          352 LGQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLKGRAIISLIGN-VQ  430 (510)
T ss_dssp             TTCTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEEEEEEEEEEEEEEEC-GG
T ss_pred             CCcccHHHHHHHHHHHcCCcEEEEEeCCCeEEEEEechHhhhhhHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEEEE-CC
Confidence                                                 000               0112356888999999999999 99


Q ss_pred             CcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388          253 GVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (327)
Q Consensus       253 ~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~  306 (327)
                      ..||+++++|++|+++||||.||+||+|+.+|||+|+++|.++|+++||+.|+.
T Consensus       431 ~~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~~~Av~aLH~~f~~  484 (510)
T 2cdq_A          431 HSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALHKSFFE  484 (510)
T ss_dssp             GHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHHHHHHS
T ss_pred             CChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999986

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=4.2e-55  Score=430.18  Aligned_cols=266  Identities=31%  Similarity=0.444  Sum_probs=230.0

Q ss_pred             hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecC
Q 020388           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (327)
Q Consensus        34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~  113 (327)
                      +.+|+++|+||+||+++|+.+|     ++.++++++++++++   + ...+++.+.++++++++  .+.|||++||+|.+
T Consensus       107 ~~~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~l~--~~~v~Vv~Gf~g~~  175 (446)
T 3tvi_A          107 ASSDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFDK---S-GCFDEKKSYEKIKEKVL--SCNKAVIPGFYGSS  175 (446)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBCC------CBCHHHHHHHHHHHTT--TCSSEECCCSEEEC
T ss_pred             ccHHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeCC---C-CceehHhhHHHHHHHHh--cCCeEEeeCceecC
Confidence            7789999999999999999996     589999999988776   2 23566667789999997  78999999999999


Q ss_pred             CCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHH
Q 020388          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM  193 (327)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~  193 (327)
                      ++|.++|+||||||++|+++|.+|+|+++++|||||||||+||+++|+|+++++++|+|+.+|+++|+++|||+|+++|+
T Consensus       176 ~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~  255 (446)
T 3tvi_A          176 FNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVK  255 (446)
T ss_dssp             TTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHH
T ss_pred             CCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCEEEeecCCCCCCceEEeCCCCC--C--------------------cchh--------------------------
Q 020388          194 RYDIPIVIRNIFNLSVPGIMICRPPVD--E--------------------NEDE--------------------------  225 (327)
Q Consensus       194 ~~~I~v~I~n~~~~e~~GT~I~~~~~~--~--------------------~~~~--------------------------  225 (327)
                      ++|||++|+|+++|+.+||+|.+....  .                    ..|.                          
T Consensus       256 ~~~ipi~i~~~~~p~~~GT~i~~~~~~~~~~~~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~  335 (446)
T 3tvi_A          256 DSGIPINIKNTNKPSDPGTLILSDTHKEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSG  335 (446)
T ss_dssp             HSSCCEEEEETTBTTSCCEEEECTTTSCCCTTCCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEE
T ss_pred             HcCCeEEEecCCCCCCCCEEEecCCcccccCcceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecC
Confidence            999999999999999999999754210  0                    0000                          


Q ss_pred             ----------hhhc-------------CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCcc
Q 020388          226 ----------QIID-------------SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEH  282 (327)
Q Consensus       226 ----------~~~~-------------~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~  282 (327)
                                ....             -....+.+.+++|+|++||.+|+++||+++++|++|+++||||.||+|++|+.
T Consensus       336 ~~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei  415 (446)
T 3tvi_A          336 VDSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEI  415 (446)
T ss_dssp             TTEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTT
T ss_pred             CCEEEEEEecchHHHHHHHHHHHHHHhcCCCcEEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCc
Confidence                      0000             01245888899999999999999999999999999999999999999999999


Q ss_pred             EEEEEeccccHHHHHHHHHHHHHhhhcC
Q 020388          283 SVCFAVPEKEVKAVAEALESKFREALNA  310 (327)
Q Consensus       283 sIs~~V~~~d~~~av~~Lh~~f~~~~~~  310 (327)
                      +|||+|+++|.++|+++||+.||++...
T Consensus       416 ~Is~vV~~~d~~~Av~aLH~~ff~~~~~  443 (446)
T 3tvi_A          416 NVIVGVETVDFEKAVKSIYNAFNEGHHH  443 (446)
T ss_dssp             EEEEEEEGGGHHHHHHHHHHHHC-----
T ss_pred             eEEEEEcHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999987554

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*

Probab=100.00  E-value=1.5e-53  Score=420.40  Aligned_cols=271  Identities=31%  Similarity=0.560  Sum_probs=234.8

Q ss_pred             ChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhc-CCCceEEecCce
Q 020388           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ-SPSNTIIATGFI  110 (327)
Q Consensus        32 ~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-~~~~vpVv~Gfi  110 (327)
                      +++.+|.++|+||.+|+.+++.+|+++|++++++++.++ +.+++.+++..++...+.+..++.++. ..+.|||++||+
T Consensus       107 ~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~-l~t~~~~~~~~~~~~~~~~~~~~~l~~l~~~~IpVv~Gf~  185 (449)
T 2j0w_A          107 SPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRAEPDIAALAELAALQLLPRLNEGLVITQGFI  185 (449)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSCTTSCCBCHHHHHHHHHHHTHHHHHHSEEEEESSE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHh-eeecCCCCCccccHhHhHHHHHHHHHHHhcCCEEEEeCCe
Confidence            589999999999999999999999999999999999999 456667776667665543333322221 123599999999


Q ss_pred             ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHH
Q 020388          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII  190 (327)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~  190 (327)
                      |.+++|.++++||||||++|+++|.+|+|+++++||||||||++||+.+|+|+++++++|+|+.+++++|+++|||+|++
T Consensus       186 g~~~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~DPr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~  265 (449)
T 2j0w_A          186 GSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLL  265 (449)
T ss_dssp             EECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHH
T ss_pred             eeCCCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCCCCCCCCCEEccCccHHHHHHHHhcCCccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCEEEeecCCCCCCceEEeCCCCCC----------------------cc--------------------h----
Q 020388          191 PVMRYDIPIVIRNIFNLSVPGIMICRPPVDE----------------------NE--------------------D----  224 (327)
Q Consensus       191 ~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~----------------------~~--------------------~----  224 (327)
                      +|.++|||++|+|+++|+.+||+|.++....                      ..                    +    
T Consensus       266 ~a~~~gi~v~I~~~~~p~~~GT~I~~~~~~~~~v~gIa~~~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss  345 (449)
T 2j0w_A          266 PAVRSDIPVFVGSSKDPRAGGTLVCNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTS  345 (449)
T ss_dssp             HHHHHTCCEEEEESSCTTSCCEEEESCCSSCCSEEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEE
T ss_pred             HHHHCCCeEEEEECCCCCCCeeEEecccccccccccceeeCCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeC
Confidence            9999999999999999988999998652100                      00                    0    


Q ss_pred             -------hhhh----c-------------CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC
Q 020388          225 -------EQII----D-------------SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS  280 (327)
Q Consensus       225 -------~~~~----~-------------~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s  280 (327)
                             ....    .             ..+..+.+.+++|+|++||.+|+..||+++++|++|++  |||.||+|++|
T Consensus       346 ~~sis~~v~~~~~~~~~~~~~~~~~~~el~~~~~v~~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mIsqg~S  423 (449)
T 2j0w_A          346 EVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEP--FNIRMICYGAS  423 (449)
T ss_dssp             TTEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSCEEEEEEEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEESSC
T ss_pred             CCeEEEEEeccccchhhHHHHHHHHHHHhccCCeEEEeCCeEEEEEECCCccccccHHHHHHHHHhC--CCeEEEEecCC
Confidence                   0000    0             00346888899999999999999999999999999965  99999999999


Q ss_pred             ccEEEEEeccccHHHHHHHHHHHHH
Q 020388          281 EHSVCFAVPEKEVKAVAEALESKFR  305 (327)
Q Consensus       281 ~~sIs~~V~~~d~~~av~~Lh~~f~  305 (327)
                      +.+|||+|+++|.++|+++||++|+
T Consensus       424 e~~Is~vV~~~d~~~Av~~lh~~f~  448 (449)
T 2j0w_A          424 SHNLCFLVPGEDAEQVVQKLHSNLF  448 (449)
T ss_dssp             TTEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred             CcEEEEEEeHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999997

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=100.00  E-value=1.2e-49  Score=405.15  Aligned_cols=272  Identities=29%  Similarity=0.441  Sum_probs=231.4

Q ss_pred             CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCc
Q 020388           30 HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF  109 (327)
Q Consensus        30 ~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gf  109 (327)
                      ..+++.+|.++++||.+|+.+++.+|+++|++++++++.++.+++++.+++.++..... +.++++++  .+.|||++||
T Consensus        60 ~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~~~~~~~~~-~~i~~ll~--~g~IpVv~Gf  136 (600)
T 3l76_A           60 NPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRP-DRLEHHLR--EGKVVVVAGF  136 (600)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC-------CCEEEE-CCHHHHHT--TTCEEEEECE
T ss_pred             CCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCCceeccccH-HHHHHHHh--CCCEEEEECC
Confidence            34678899999999999999999999999999999999999888876665544432111 56788887  7899999999


Q ss_pred             eecCCCC--CeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHh
Q 020388          110 IASTPDN--IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (327)
Q Consensus       110 i~~~~~g--~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~  187 (327)
                      +|.+++|  .++++||||||++|+.+|.+|+|+++++||||||||++||+++|+|+++++++|+|+.+|+++|+++|||+
T Consensus       137 ~g~~~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~  216 (600)
T 3l76_A          137 QGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPR  216 (600)
T ss_dssp             EEC----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHH
T ss_pred             eecCCCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHH
Confidence            9999999  89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhCCCCEEEeecCCCCCCceEEeCCCC---------CCc-----------------ch-----------------
Q 020388          188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPV---------DEN-----------------ED-----------------  224 (327)
Q Consensus       188 a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~---------~~~-----------------~~-----------------  224 (327)
                      |+++|+++|||++|+|++++ .+||+|.++..         ...                 .+                 
T Consensus       217 a~~~a~~~gipv~I~n~~~~-~~GT~I~~~~~~~~~~~~~~~~~~v~gi~~~~~~~~i~i~~~~~~~g~~~~if~~La~~  295 (600)
T 3l76_A          217 AVEIARNYGIPLVVRSSWSD-EPGTKVVAPPVQNRSLVGLEIAKAVDGVEYDADQAKVALLRVPDRPGVASKLFRDIAQQ  295 (600)
T ss_dssp             HHHHHHHHTCCEEEEETTCC-SCCEEEECCCCCSCCCCCCBSSCSCCEEEEECCCEEEEEEEEECSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHCCCeEEEEECCCC-CCCeEEecCCccccccccccccCcceEEEeeCCEEEEEEeCCCCcccHHHHHHHHHHHc
Confidence            99999999999999999984 68999975431         000                 00                 


Q ss_pred             -------hh---------------------------hhc---------CCeeeEEeecCeeEEEeecCCCCCcccHHHHH
Q 020388          225 -------EQ---------------------------IID---------SPVKGFATIDNLALVNVEGTGMAGVPGTANAI  261 (327)
Q Consensus       225 -------~~---------------------------~~~---------~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~i  261 (327)
                             .|                           ...         ..+..+.+.+++|+|+++|.+|++.||+++++
T Consensus       296 ~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~a~~~l~~~~~el~~~~~~~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~a~i  375 (600)
T 3l76_A          296 QVDIDLIIQSIHDGNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAEIIVEKGIAKIAIAGAGMIGRPGIAAKM  375 (600)
T ss_dssp             TCCCCCEEBCCCBTTEEEEEEEECGGGHHHHHHHHHHHGGGGSSSTTCSSSSEEEEECSEEEEEEECGGGTTCTTHHHHH
T ss_pred             CCCEEEEEeeccCCCCceEEEEEeHHHHHHHHHHHHHHHHHhhccccccCcceeEecCCeEEEEEECCCcccCccHHHHH
Confidence                   00                           000         13457888999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388          262 FGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (327)
Q Consensus       262 f~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (327)
                      |++|+++||||.||+  +|+.+|||+|+++|.++|+++||++|+.+
T Consensus       376 f~aL~~~~Ini~~is--tSe~~Is~vI~~~d~~~Av~aLh~~f~~~  419 (600)
T 3l76_A          376 FKTLADVGVNIEMIS--TSEVKVSCVIDQRDADRAIAALSNAFGVT  419 (600)
T ss_dssp             HHHHHHTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHTTCC
T ss_pred             HHHHHhCCCcEEEEe--cCCCEEEEEEcHHHHHHHHHHHHHhhccc
Confidence            999999999999999  67999999999999999999999999875

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=100.00  E-value=1.2e-47  Score=376.07  Aligned_cols=283  Identities=25%  Similarity=0.361  Sum_probs=217.0

Q ss_pred             CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (327)
Q Consensus        31 ~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi  110 (327)
                      .+++..|.+++.||.+++.+++.+|+++|+++.++++.++.++++..+++..+... ..+.++++++  .+.|||++||+
T Consensus        61 ~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~~~v~~~-~~~~i~~~l~--~g~ipVv~g~~  137 (421)
T 3ab4_A           61 PPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDV-TPGRVREALD--EGKICIVAGFQ  137 (421)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC-----------------C-CHHHHHHHHH--TTCEEEC----
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCCeeechh-hHHHHHHHHh--CCCEEEEeCCc
Confidence            45788999999999999999999999999999999999986666655544333221 1277888888  88999999999


Q ss_pred             ecCCC-CCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhH
Q 020388          111 ASTPD-NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI  189 (327)
Q Consensus       111 ~~~~~-g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~  189 (327)
                      |.+++ |.++++||||||++|+.+|.+|+|+++++||||||||++||+.+|++++|++++|+|+.+|+++|++++||+|+
T Consensus       138 g~~~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~  217 (421)
T 3ab4_A          138 GVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSV  217 (421)
T ss_dssp             --------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHH
T ss_pred             CcCCCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcCCcCchHHHH
Confidence            99999 99999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCC
Q 020388          190 IPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVG  269 (327)
Q Consensus       190 ~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~g  269 (327)
                      .+|.++|||++|+|+++| .+||+|.++..+. .   .....+++++..+|+++|++.|  |.+.|++++++|+.|+++|
T Consensus       218 ~~a~~~gi~v~I~n~~~~-~~GT~I~~~~~~~-~---~~~~~i~~i~~~~~~~~i~v~~--~~~~~g~~~~If~~La~~~  290 (421)
T 3ab4_A          218 EYARAFNVPLRVRSSYSN-DPGTLIAGSMEDI-P---VEEAVLTGVATDKSEAKVTVLG--ISDKPGEAAKVFRALADAE  290 (421)
T ss_dssp             HHHHHTTCCEEEEESSSC-CCCEEECSCGGGS-C---TTTCCCCEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCEEEecCcCC-CCCeEEEecCccc-c---cccCccceEEeeCCEEEEEEec--cCCcccHHHHHHHHHHHcC
Confidence            999999999999999998 6899997651110 0   0234699999999999999998  7788999999999999999


Q ss_pred             CCEEEEEecCCc-----cEEEEEeccccHHHHHHHHHHHHHhhhcCCCCce----eEEEEeecc
Q 020388          270 ANVIMISQASSE-----HSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ----FSASILSQD  324 (327)
Q Consensus       270 I~V~~Isq~~s~-----~sIs~~V~~~d~~~av~~Lh~~f~~~~~~~~~~~----~~~~~~~~~  324 (327)
                      |+|+||+|++++     .+|+|+|++++.+++.+.|++ +..++....++-    -.++|+|..
T Consensus       291 I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~-~~~~~~~~~v~~~~~~a~vsvVG~g  353 (421)
T 3ab4_A          291 INIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKK-LQVQGNWTNVLYDDQVGKVSLVGAG  353 (421)
T ss_dssp             CCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHH-HHTTTTCSEEEEECCEEEEEEECGG
T ss_pred             CcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHH-HHHHcCCceEEEeCCeEEEEEEccC
Confidence            999999997664     699999999999999988876 555554322221    337777753

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3

Probab=99.91  E-value=4.1e-24  Score=193.81  Aligned_cols=159  Identities=19%  Similarity=0.262  Sum_probs=131.3

Q ss_pred             hhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (327)
Q Consensus        33 ~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~  112 (327)
                      ++..+.+.++|+.+++.++..+|.+.|+++.++++.+...+.+        ++... +.+ ++++  .+.|||++|+.+ 
T Consensus        71 ~~~~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~~~--------~~~~~-~~~-~ll~--~g~ipVv~g~~g-  137 (239)
T 1ybd_A           71 RATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAE--------TYARP-KAI-QYLE--EGKVVIFAAGTG-  137 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSCE--------ECCHH-HHH-HHHH--TTCEEEEESTTS-
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeccccccc--------chhHH-HHH-HHHh--CCcEEEEECCcc-
Confidence            3445667788999999999999999999999999877643322        11111 334 6777  789999987632 


Q ss_pred             CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHH
Q 020388          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPV  192 (327)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a  192 (327)
                          .    .++++|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++   |.++|||+|+.+|
T Consensus       138 ----~----~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a  206 (239)
T 1ybd_A          138 ----N----PFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---NLKVMDATAFALC  206 (239)
T ss_dssp             ----S----TTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHT---TCCSSCHHHHHHH
T ss_pred             ----C----CCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHh---cccccCHHHHHHH
Confidence                1    2367899999999999999999999999999999999999999999999998875   8899999999999


Q ss_pred             HhCCCCEEEeecCCCC---------CCceEEe
Q 020388          193 MRYDIPIVIRNIFNLS---------VPGIMIC  215 (327)
Q Consensus       193 ~~~~I~v~I~n~~~~e---------~~GT~I~  215 (327)
                      .++|+|++|.|+++|+         ..||+|.
T Consensus       207 ~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~  238 (239)
T 1ybd_A          207 RERKLNIVVFGIAKEGSLKRVITGEDEGTLVH  238 (239)
T ss_dssp             HHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred             HHcCCcEEEEeCCChhHHHHHHcCCCCCeEEc
Confidence            9999999999987653         4588875

>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*

Probab=99.91  E-value=6.7e-24  Score=193.57  Aligned_cols=181  Identities=18%  Similarity=0.208  Sum_probs=138.0

Q ss_pred             ccHHHHHHHHHHHHhhhc---------C-------------CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEccc
Q 020388           11 LSYEFIRSTYNFLSNVDS---------G-------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (327)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~---------~-------------~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~   68 (327)
                      +..+.++...+.+..+..         +             ..+++..|.+.++|+.+++.++..+|.+.|+++.++++.
T Consensus        28 ~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~~~~~g~~~~~~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~  107 (247)
T 2a1f_A           28 IDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAF  107 (247)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchhHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccc
Confidence            445667777766665432         1             134455677888999999999999999999999999988


Q ss_pred             ceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeecc
Q 020388           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (327)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV  148 (327)
                      +...+.+ .       +  ....++++++  .+.|||++|+.     |.    .++++|++|+.+|.+|+|++++|||||
T Consensus       108 ~~~~~~~-~-------~--~~~~~~~ll~--~g~ipVi~~~~-----g~----~~~~~D~~Aa~lA~~l~Ad~liilTDV  166 (247)
T 2a1f_A          108 QLNGICD-T-------Y--NWSEAIKMLR--EKRVVIFSAGT-----GN----PFFTTDSTACLRGIEIEADVVLKATKV  166 (247)
T ss_dssp             CCTTTSE-E-------C--CHHHHHHHHH--TTCEEEEESTT-----SC----SSCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             ccccccc-h-------h--hHHHHHHHHh--CCCEEEEeCCc-----CC----CCCCcHHHHHHHHHhCCCCEEEEEeCC
Confidence            7643321 1       1  1233567787  88999999842     22    236789999999999999999999999


Q ss_pred             CccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCC---------CCCceEEe
Q 020388          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (327)
Q Consensus       149 ~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~  215 (327)
                      ||||++||+.+|+++++++++++|+.++   |.++|+|+|+.+|.++|+|++|.|+++|         +..||+|.
T Consensus       167 dGvy~~dP~~~p~a~~i~~i~~~e~~~~---g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~  239 (247)
T 2a1f_A          167 DGVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC  239 (247)
T ss_dssp             SSCBCC-------CCBCSEECHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEEC
T ss_pred             CcccCCCCCCCCCCeEcccCCHHHHHHc---CccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEe
Confidence            9999999999999999999999999875   8899999999999999999999998654         35689885

>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*

Probab=99.91  E-value=2.5e-23  Score=189.15  Aligned_cols=143  Identities=21%  Similarity=0.282  Sum_probs=121.9

Q ss_pred             hcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeee
Q 020388           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTL  121 (327)
Q Consensus        42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~l  121 (327)
                      ....+++.+++.+|+++|++++++++.++...+.      ..+.    +.+.++++  .+.|||++|+.+     ..   
T Consensus        81 la~~~n~~l~~~~l~~~G~~av~lt~~d~~~~~~------~~~~----~~i~~lL~--~g~ipVi~~~~g-----~~---  140 (240)
T 4a7w_A           81 LATVINAVAMQEALEHIGLDTRVQSAIEIKEICE------SYIY----RKAIRHLE--KGRVVIFGAGTG-----NP---  140 (240)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEESSCCTTTSE------ECCH----HHHHHHHH--TTCEEEEESTTS-----CT---
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEecHHHcCcccC------cCcH----HHHHHHHH--CCCEEEEeCCCC-----CC---
Confidence            4567889999999999999999999988753221      1233    66778888  899999998522     21   


Q ss_pred             cCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEE
Q 020388          122 KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI  201 (327)
Q Consensus       122 grggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I  201 (327)
                       .+.+|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++   |.++|+++|+.+|.++|+|++|
T Consensus       141 -~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I  216 (240)
T 4a7w_A          141 -FFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMDDTAISLAKDNKLPIVV  216 (240)
T ss_dssp             -TSCHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEECHHHHHHS---SCCSSCHHHHHHHHHTTCCEEE
T ss_pred             -CCChHHHHHHHHHHcCCCEEEEccCCCceECCCCCCCCCCeEcceecHHHHHhc---CccccHHHHHHHHHHCCCeEEE
Confidence             245799999999999999999999999999999999999999999999998764   8899999999999999999999


Q ss_pred             eecCCCC
Q 020388          202 RNIFNLS  208 (327)
Q Consensus       202 ~n~~~~e  208 (327)
                      .|++.|.
T Consensus       217 ~~g~~~~  223 (240)
T 4a7w_A          217 CNMFKKG  223 (240)
T ss_dssp             EESSSTT
T ss_pred             ECCCCcc
Confidence            9997653

>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}

Probab=99.91  E-value=2e-23  Score=191.39  Aligned_cols=152  Identities=18%  Similarity=0.279  Sum_probs=126.7

Q ss_pred             hcHHHHHHHHHHHHHH-cCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeee
Q 020388           42 HGELWSAQMLAAVVRK-NGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT  120 (327)
Q Consensus        42 ~GE~~s~~l~~~~L~~-~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~  120 (327)
                      .+..+++.+|..+|++ +|+++.++++.++..+++      ..+.    ..+.++++  .+.|||++|  + ++++.++ 
T Consensus        85 ~~~~~~~~ll~~~l~~~~Gi~a~~l~~~~~~~v~~------~~~~----~~~~~lL~--~g~IpVi~g--g-~g~~~vt-  148 (255)
T 2jjx_A           85 LGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAE------PYIR----LRAVHHLD--NGYIVIFGG--G-NGQPFVT-  148 (255)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCEEEEESSCCCSSSE------ECCH----HHHHHHHH--TTCEEEEES--T-TSCSSCC-
T ss_pred             HHHHHHHHHHHHHHHhhcCCceEEecHHHcCcccC------cccH----HHHHHHHh--CCcEEEEeC--C-CCCCccc-
Confidence            3447788888999999 999999999988764432      1222    33447787  889999998  3 3333333 


Q ss_pred             ecCCcchHHHHHHHHHhCCceEEEee-ccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCE
Q 020388          121 LKRDGSDFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPI  199 (327)
Q Consensus       121 lgrggsD~~A~~lA~~l~A~~l~~~t-DV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v  199 (327)
                           +|++|+.+|.+|+|+++++|| ||||||++||+++|+++++++++|+|+.++   |.++|+|.|+++|.++|+|+
T Consensus       149 -----tD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---G~~~m~~~a~~~a~~~gi~v  220 (255)
T 2jjx_A          149 -----TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVMDQAALLLARDYNLPA  220 (255)
T ss_dssp             -----SHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHHTCCE
T ss_pred             -----hHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHc---CCccCHHHHHHHHHHcCCeE
Confidence                 499999999999999999999 999999999999999999999999988775   88999999999999999999


Q ss_pred             EEeecCCCC---------CCceEEeCC
Q 020388          200 VIRNIFNLS---------VPGIMICRP  217 (327)
Q Consensus       200 ~I~n~~~~e---------~~GT~I~~~  217 (327)
                      +|.|+++|+         ..||+|.++
T Consensus       221 ~I~~~~~~~~l~~~l~g~~~GT~I~~~  247 (255)
T 2jjx_A          221 HVFNFDEPGVMRRICLGEHVGTLINDD  247 (255)
T ss_dssp             EEEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred             EEEeCCCchHHHHHhcCCCCceEEecC
Confidence            999998773         579999874

>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*

Probab=99.90  E-value=2.4e-23  Score=187.34  Aligned_cols=150  Identities=19%  Similarity=0.245  Sum_probs=125.2

Q ss_pred             ChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCcee
Q 020388           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (327)
Q Consensus        32 ~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~  111 (327)
                      ++...+.+.+.|+.+++.+++..|+++|+++            +      .+++    ++++++++  .+.|||++|  +
T Consensus        60 ~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------------~------~~~~----~~i~~ll~--~g~ipVi~g--g  113 (226)
T 2j4j_A           60 GEAYLDLLGIWASRLNAYLVMFSLQDLAYMH------------V------PQSL----EEFIQDWS--HGKVVVTGG--F  113 (226)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTTSBCSC------------C------CSSH----HHHHHHHT--TSSBEEECC--C
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHhCCCC------------C------cCCH----HHHHHHHH--CCCEEEEcC--C
Confidence            4566788899999999999999999999954            1      1234    77888888  889999998  2


Q ss_pred             cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhc-CCC------cc
Q 020388          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GAN------VL  184 (327)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~-g~~------v~  184 (327)
                       ..        ++++|++|+.+|.+|+|+++++||||||||++||+++|+++++++++++|+.+++.. |.+      ++
T Consensus       114 -~~--------~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~  184 (226)
T 2j4j_A          114 -QP--------GQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELL  184 (226)
T ss_dssp             -ST--------TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC----------CCS
T ss_pred             -CC--------CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccc
Confidence             11        356899999999999999999999999999999999999999999999999999644 544      77


Q ss_pred             cHhhHHHHHhCCCCEEEeecCCC---------CCCceEEeC
Q 020388          185 HPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (327)
Q Consensus       185 ~p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~~  216 (327)
                      |++|+.+|.++|+|++|.|+++|         +..||+|.+
T Consensus       185 k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~  225 (226)
T 2j4j_A          185 DPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP  225 (226)
T ss_dssp             CHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred             hHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence            89999999999999999998654         346898864

>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A

Probab=99.90  E-value=5.3e-23  Score=187.31  Aligned_cols=182  Identities=20%  Similarity=0.186  Sum_probs=144.6

Q ss_pred             ccHHHHHHHHHHHHhhhc---------C--C-----------CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEccc
Q 020388           11 LSYEFIRSTYNFLSNVDS---------G--H-----------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (327)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~---------~--~-----------~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~   68 (327)
                      +..++++...+.+..+.+         +  .           .+....|++-....++++.++..+|.+.|++++.+++.
T Consensus        29 ~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~~~~~g~~~~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~  108 (243)
T 3ek6_A           29 IDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAI  108 (243)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTTTSCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechh
Confidence            456778777777776543         1  1           12334454444556788888999999999999999998


Q ss_pred             ceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeecc
Q 020388           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (327)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV  148 (327)
                      ++..+++      ..+.    +.+.++++  .|.|||++|+.     |.    .++++|++|+++|.+|+|+.+++||||
T Consensus       109 ~~~~v~~------~~~~----~~~~~lL~--~g~IpVv~~~~-----g~----~~~~~D~~Aa~lA~~l~Ad~li~lTdV  167 (243)
T 3ek6_A          109 KINDVCE------DFIR----RRAIRHLE--KGRIAIFAAGT-----GN----PFFTTDSGAALRAIEIGADLLLKATKV  167 (243)
T ss_dssp             CBTTTBE------ECCH----HHHHHHHH--TTCEEEEESTT-----SS----TTCCHHHHHHHHHHHHTCSEEEEECSS
T ss_pred             hcCcccC------cCCH----HHHHHHHH--CCcEEEEECCC-----CC----CcCChHHHHHHHHHHcCCCEEEEEeCC
Confidence            8654332      1233    67788888  89999999842     22    135689999999999999999999999


Q ss_pred             CccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCC---------CCCceEEeC
Q 020388          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (327)
Q Consensus       149 ~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~~  216 (327)
                      ||||++||+++|+|+++++++++|+.+   .|.++|+++|+..|.++|+|++|.|+++|         +..||+|.+
T Consensus       168 dGvy~~dp~~~p~a~~i~~i~~~e~~~---~g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~  241 (243)
T 3ek6_A          168 DGVYDKDPKKHSDAVRYDSLTYDEVIM---QGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG  241 (243)
T ss_dssp             SSCBSSCGGGCTTCCBCSEECHHHHHH---HTCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred             CccCCCCCCCCCCceecccccHHHHHh---CCchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence            999999999999999999999999876   37889999999999999999999998754         346999875

>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A

Probab=99.90  E-value=2.1e-23  Score=200.41  Aligned_cols=170  Identities=16%  Similarity=0.224  Sum_probs=105.7

Q ss_pred             hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecC
Q 020388           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (327)
Q Consensus        34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~  113 (327)
                      ...+.++++||..++.++...|.++|+++.     ++.++.+ .+.. ...+...++.++.+++  .+.|||+++.    
T Consensus        70 ~~~qa~aavGq~~l~~~~~~~l~~~G~~~~-----qvllt~~-d~~~-~~r~~n~~~~i~~LL~--~g~IPIv~en----  136 (367)
T 2j5v_A           70 ASKQLLAAVGQSRLIQLWEQLFSIYGIHVG-----QMLLTRA-DMED-RERFLNARDTLRALLD--NNVVPVINEN----  136 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTCCEE-----EEEECGG-GGSS-HHHHHHHHHHHHHHHH--TTCEEEEEEC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCceE-----EEEEecc-cccC-ceEEEhHHHHHHHHHH--CCCEEEECCC----
Confidence            567777899999999999999999999985     3333332 2211 1223334467888888  8999999642    


Q ss_pred             CCCCeee--ecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCH--HHHHHHHh-----cCCCcc
Q 020388          114 PDNIPTT--LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVL  184 (327)
Q Consensus       114 ~~g~~~~--lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~--~ea~~l~~-----~g~~v~  184 (327)
                        |.+.+  +.+|++|++|+.+|.+|+|+.+++||||||||++||+.+|++++|+++++  +|+.+++.     +|+++|
T Consensus       137 --d~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM  214 (367)
T 2j5v_A          137 --DAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGM  214 (367)
T ss_dssp             --TTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC------------------------------------------C
T ss_pred             --CceecccccCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCcc
Confidence              33333  66899999999999999999999999999999999999999999999999  89988875     478999


Q ss_pred             cH--hhHHHHHhCCCCEEEeecCCCC---------CCceEEeCCC
Q 020388          185 HP--RTIIPVMRYDIPIVIRNIFNLS---------VPGIMICRPP  218 (327)
Q Consensus       185 ~p--~a~~~a~~~~I~v~I~n~~~~e---------~~GT~I~~~~  218 (327)
                      +|  +|+..|.++|+|++|.+++.|+         ..||+|.+..
T Consensus       215 ~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~GT~i~~~~  259 (367)
T 2j5v_A          215 STKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQA  259 (367)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCCSEEECCCS
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCCcEEEEcCc
Confidence            99  5899999999999999998765         6799997653

>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3

Probab=99.89  E-value=7.8e-23  Score=187.11  Aligned_cols=184  Identities=20%  Similarity=0.263  Sum_probs=144.8

Q ss_pred             ccHHHHHHHHHHHHhhhc---------C--C-----------CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEccc
Q 020388           11 LSYEFIRSTYNFLSNVDS---------G--H-----------ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (327)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~---------~--~-----------~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~   68 (327)
                      +..+.++...+.+..+..         +  .           .+++..+.+.++++.++..++..+|.+.|+++.++++.
T Consensus        27 ~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~~~~lg~~~~~~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~  106 (252)
T 1z9d_A           27 IDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAI  106 (252)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccchHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecc
Confidence            345667777766666532         1  1           22333455667788889998999999999999999987


Q ss_pred             ceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEee-c
Q 020388           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT-D  147 (327)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~t-D  147 (327)
                      +...+.+ .       +  ....+.++++  .+.|||++|+.     |.    .++++|++|+.+|.+|+|++++||| |
T Consensus       107 ~~~~~~~-~-------~--~~~~~~~lL~--~g~IpVi~~~~-----g~----~~~~~D~~Aa~lA~~l~Ad~LiilT~D  165 (252)
T 1z9d_A          107 PMQNVAE-P-------Y--IRGRALRHLE--KNRIVVFGAGI-----GS----PYFSTDTTAALRAAEIEADAILMAKNG  165 (252)
T ss_dssp             CBTTTBE-E-------C--CHHHHHHHHH--TTCEEEEESTT-----SC----TTCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             ccccccC-c-------c--hHHHHHHHHh--CCCEEEEeCCc-----CC----CCCChHHHHHHHHHhcCCCEEEEecCC
Confidence            7643322 1       1  1233467887  88999999832     22    2567999999999999999999999 9


Q ss_pred             cCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCC---------CCceEEeCCC
Q 020388          148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMICRPP  218 (327)
Q Consensus       148 V~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e---------~~GT~I~~~~  218 (327)
                      |||||++||+++|++++|++++++|+.+   .|.++|+++|+..|.++|+|++|.|++.|+         ..||+|.++.
T Consensus       166 VdGvy~~dP~~~~~a~~i~~i~~~e~~~---~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  242 (252)
T 1z9d_A          166 VDGVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKV  242 (252)
T ss_dssp             CCSCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC-
T ss_pred             CCeeeCCCCCCCCCCeEeeEecHHHHHh---ccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCC
Confidence            9999999999999999999999999876   478899999999999999999999997664         5799998654

>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2

Probab=99.89  E-value=1.5e-22  Score=189.66  Aligned_cols=170  Identities=14%  Similarity=0.180  Sum_probs=138.4

Q ss_pred             hhHHHHh--hhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCC-----------C----CCCCchHHHHHHHHH
Q 020388           33 ESFTDFV--VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-----------Q----VDPDFSESEKRLEKW   95 (327)
Q Consensus        33 ~~~~d~v--~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~-----------~----~~~~~~~~~~~i~~~   95 (327)
                      +...+.+  ++.|+.  ...+++.|++.|++++++++.+..++++..++           .    ..++.    +.++++
T Consensus        92 ~~~l~~~~~~~~G~l--~~~l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~----~~i~~l  165 (299)
T 2ap9_A           92 PEVLDVARMVLFGQV--GRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNT----AAMLDL  165 (299)
T ss_dssp             HHHHHHHHHHHHHTH--HHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECH----HHHHHH
T ss_pred             HHHHHHHHHHHhhHH--HHHHHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecH----HHHHHH
Confidence            4455543  446884  34479999999999999999886444322211           0    01234    778889


Q ss_pred             hhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHH
Q 020388           96 FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE  175 (327)
Q Consensus        96 l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~  175 (327)
                      ++  .+.|||++|+ +.++.|..+++   ++|++|+.+|.+|+|++++|||||||||++||+   ++++|++++++|+.+
T Consensus       166 L~--~g~IpVv~~v-~~~~~G~~~~l---~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~---~~~~i~~is~~e~~~  236 (299)
T 2ap9_A          166 VA--AGRIPVVSTL-APDADGVVHNI---NADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD---RDSLVSEIDTGTLAQ  236 (299)
T ss_dssp             HH--TTCEEEEESE-EECTTCCEEEE---CHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC---TTCEESEEEHHHHHH
T ss_pred             Hh--CCCeEEECCe-eECCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC---CCcChhhcCHHHHHH
Confidence            98  8999999997 88999988887   589999999999999999999999999999998   479999999999999


Q ss_pred             HHhcCCCcccHh--hHHHHHhCCCC-EEEeecCCCC----------CCceEEeCC
Q 020388          176 MSYFGANVLHPR--TIIPVMRYDIP-IVIRNIFNLS----------VPGIMICRP  217 (327)
Q Consensus       176 l~~~g~~v~~p~--a~~~a~~~~I~-v~I~n~~~~e----------~~GT~I~~~  217 (327)
                      ++.+++++|+||  |+..|.++|+| ++|.|+..|+          ..||.|.+.
T Consensus       237 l~~~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~  291 (299)
T 2ap9_A          237 LLPTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRG  291 (299)
T ss_dssp             HGGGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECC
T ss_pred             HHHhhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecC
Confidence            999999999997  88899999999 9999986543          458999764

>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.88  E-value=1.5e-22  Score=187.07  Aligned_cols=156  Identities=16%  Similarity=0.168  Sum_probs=120.7

Q ss_pred             HHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCC--CCeeeecCCcc
Q 020388           49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD--NIPTTLKRDGS  126 (327)
Q Consensus        49 ~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~--g~~~~lgrggs  126 (327)
                      ..+++.|+++|++++++++.+..+++.++.  ..++.    +.++.+++  .+.|||++||++.+.+  |+++++   ++
T Consensus        92 ~~l~~~L~~~G~~a~~l~g~~~~~~~~g~v--~~v~~----~~i~~lL~--~g~ipVi~~~~~~~~~~~g~~~~~---~~  160 (269)
T 3ll9_A           92 SHVCDALLAEGIPAVSMQPSAFIRAHAGRI--SHADI----SLIRSYLE--EGMVPVVYGDVVLDSDRRLKFSVI---SG  160 (269)
T ss_dssp             HHHHHHHHHTTCCEEECCGGGTEEEETTEE--EEECC----HHHHHHHH--TTCEEEEECEEEEBSCTTTSEEEE---CH
T ss_pred             HHHHHHHHHCCCcEEEEcchHcCeEecCee--eeecH----HHHHHHHH--CCCEEEECCCEEecccccCcceec---ch
Confidence            357999999999999999999877653221  23455    78888998  8999999999998888  888776   48


Q ss_pred             hHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh-----cCCCcccHh--hHHHHHhCCCCE
Q 020388          127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY-----FGANVLHPR--TIIPVMRYDIPI  199 (327)
Q Consensus       127 D~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~-----~g~~v~~p~--a~~~a~~~~I~v  199 (327)
                      |++|+.+|.+|+|+++++||||||||++||+.+|++++++++++.|+.++..     .+.++|.||  |+..|.++|+++
T Consensus       161 D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a~~~Gv~v  240 (269)
T 3ll9_A          161 DQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAEKGVES  240 (269)
T ss_dssp             HHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHHHhCCCeE
Confidence            9999999999999999999999999999999999999999999999977653     456789996  667777899999


Q ss_pred             EEeecCCC---------CCC-ceEEe
Q 020388          200 VIRNIFNL---------SVP-GIMIC  215 (327)
Q Consensus       200 ~I~n~~~~---------e~~-GT~I~  215 (327)
                      +|.++..|         +.. ||+|.
T Consensus       241 ~I~~g~~~~~l~~~~~g~~~~GT~i~  266 (269)
T 3ll9_A          241 EIINAAVPGNIERALLGEEVRGTRIT  266 (269)
T ss_dssp             EEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred             EEEeCCCchHHHHHHCCCCCCcEEEE
Confidence            99998654         345 88875

>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}

Probab=99.88  E-value=8.8e-22  Score=182.48  Aligned_cols=181  Identities=19%  Similarity=0.247  Sum_probs=138.6

Q ss_pred             ccHHHHHHHHHHHHhhhc---------C-------------CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEccc
Q 020388           11 LSYEFIRSTYNFLSNVDS---------G-------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (327)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~---------~-------------~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~   68 (327)
                      +..++++...+.+.++.+         +             ..+....|++-.+++++++.++...|+++|++++.+.+.
T Consensus        69 ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~~~gl~~~~~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~  148 (281)
T 3nwy_A           69 LDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAI  148 (281)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHHhcCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence            556777777777776654         1             122344566667889999999999999999999888877


Q ss_pred             ceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeecc
Q 020388           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (327)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV  148 (327)
                      +...+.+ .+    .+    .+.+ ++++  .+.|||++|+.     |.    .++++|++|+++|.+|+||.+++||||
T Consensus       149 ~~~~~~~-~~----~~----~~~l-~lL~--~g~IpVv~g~~-----g~----~~~~~D~~Aa~lA~~l~Ad~LiilTDV  207 (281)
T 3nwy_A          149 TMGQVAE-PY----LP----LRAV-RHLE--KGRVVIFGAGM-----GL----PYFSTDTTAAQRALEIGADVVLMAKAV  207 (281)
T ss_dssp             CCGGGSE-EC----CH----HHHH-HHHH--TTCEEEEESTT-----SS----TTCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             ccccccc-cc----ch----HHHH-HHHH--cCCeEEEECCC-----CC----CCCCHHHHHHHHHHHcCCCEEEEeecc
Confidence            7654442 11    11    1334 6777  89999999842     22    136789999999999999999999999


Q ss_pred             CccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCC---------CCCceEEe
Q 020388          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (327)
Q Consensus       149 ~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~  215 (327)
                      ||||++||+++|+|++++++++.|+.+   .|.++|+++|+..|.++|+|++|.|+++|         +..||+|.
T Consensus       208 dGVy~~dP~~~p~A~~i~~is~~e~~~---~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~  280 (281)
T 3nwy_A          208 DGVFAEDPRVNPEAELLTAVSHREVLD---RGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT  280 (281)
T ss_dssp             SSCBCC-----CCCCBCSEECHHHHHT---TTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred             CccccCCCCcCCCCeEcccccHHHHHH---cCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence            999999999999999999999999755   47889999999999999999999998754         34688874

>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}

Probab=99.87  E-value=3.9e-22  Score=184.83  Aligned_cols=159  Identities=17%  Similarity=0.168  Sum_probs=127.4

Q ss_pred             hhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (327)
Q Consensus        33 ~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~  112 (327)
                      +...+.+...++.++..+++..+...|++++.+                    ....+.++.+++  .+.|||++||++.
T Consensus        98 ~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~~--------------------~~~~~~i~~lL~--~g~IpVi~~~~~~  155 (276)
T 2ogx_A           98 VGSLAPLAASEAGQNGHILAAMLASEGVSYVEH--------------------PTVADQLAIHLS--ATRAVVGSAFPPY  155 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCCH--------------------HHHHHHHHHHHH--HSSEEEEESSCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc--------------------cChHHHHHHHHh--CCCEEEEcCCccc
Confidence            445556666667777777777776777754211                    112367888888  7899999999776


Q ss_pred             CC--C-CCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCC--CCCCCeEEeecCHHHHHHHHhcCCCcccHh
Q 020388          113 TP--D-NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR--KVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (327)
Q Consensus       113 ~~--~-g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~--~~~~a~~i~~is~~ea~~l~~~g~~v~~p~  187 (327)
                      +.  . |..  +.++++|++|+.+|.+|+|+++++||||||||++||+  .+|++++|+++++.|+.+++  |+++|+|+
T Consensus       156 ~~~e~~G~~--~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~--g~ggM~~K  231 (276)
T 2ogx_A          156 HHHEFPGSR--IPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSE--GPLPVDRA  231 (276)
T ss_dssp             GGGCCSSSS--SCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSC--SCCSSCHH
T ss_pred             ccccccCCc--CCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHh--CcCChHHH
Confidence            62  2 222  2346799999999999999999999999999999999  89999999999999999987  89999999


Q ss_pred             hHHHHH--hCCCCEEEeecCCC---------CCCceEEeCC
Q 020388          188 TIIPVM--RYDIPIVIRNIFNL---------SVPGIMICRP  217 (327)
Q Consensus       188 a~~~a~--~~~I~v~I~n~~~~---------e~~GT~I~~~  217 (327)
                      +...+.  +++++++|.|++.|         +..||+|.+.
T Consensus       232 ~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  272 (276)
T 2ogx_A          232 LLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG  272 (276)
T ss_dssp             HHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred             HHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence            998888  66889999998866         4679999764

>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*

Probab=99.87  E-value=1.6e-21  Score=177.69  Aligned_cols=149  Identities=25%  Similarity=0.290  Sum_probs=123.3

Q ss_pred             ChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCcee
Q 020388           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (327)
Q Consensus        32 ~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~  111 (327)
                      ++...+.+.+.|+.+++.++...|.++|++.      +            .++.    +.+.++++  .+.|||++|   
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------~------------~~~~----~~i~~lL~--~g~IpVi~g---  132 (244)
T 2brx_A           80 SETFKDFIGIQITRANAMLLIAALREKAYPV------V------------VEDF----WEAWKAVQ--LKKIPVMGG---  132 (244)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHGGGBCSS------C------------BCSH----HHHHHHHH--TTCBCEECC---
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHcCCCC------C------------cCCH----HHHHHHHh--CCCEEEEcC---
Confidence            4566677788899999999999999999754      0            1233    66778888  899999998   


Q ss_pred             cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhc-CC-----Cccc
Q 020388          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GA-----NVLH  185 (327)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~-g~-----~v~~  185 (327)
                          |..    ++++|++|+.+|.+|+|+++++||||||||++||+++|++++++++++.|+.+++.. |.     .+++
T Consensus       133 ----g~~----~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~  204 (244)
T 2brx_A          133 ----THP----GHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVID  204 (244)
T ss_dssp             ----CST----TCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSC
T ss_pred             ----CCC----CCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchH
Confidence                221    246899999999999999999999999999999999999999999999999998543 43     7889


Q ss_pred             HhhHHHHHhCCCCEEEeecCC---------CCCCceEEe
Q 020388          186 PRTIIPVMRYDIPIVIRNIFN---------LSVPGIMIC  215 (327)
Q Consensus       186 p~a~~~a~~~~I~v~I~n~~~---------~e~~GT~I~  215 (327)
                      +.|++.+.+.+++++|.|++.         .+..||+|.
T Consensus       205 ~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~  243 (244)
T 2brx_A          205 PLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIE  243 (244)
T ss_dssp             HHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEEC
T ss_pred             HHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEec
Confidence            999999999999999998753         334689885

>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3

Probab=99.87  E-value=2.8e-22  Score=183.10  Aligned_cols=161  Identities=13%  Similarity=0.141  Sum_probs=122.2

Q ss_pred             hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecC
Q 020388           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (327)
Q Consensus        34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~  113 (327)
                      ...+.+.+.||....+++..+|.++|+++..+     .. +...+.. ...+....+.++.+++  .+.|||++|+-+..
T Consensus        63 ~~~~~l~~~~q~~l~~~~~~~l~~~G~~~~~i-----~~-~~~~~~~-~~~~~~~~~~i~~ll~--~g~ipVi~~~d~v~  133 (251)
T 2ako_A           63 INKQVLAAIGQPFLISVYNELLAKFNKLGGQI-----LL-TGKDFDS-RKATKHAKNAIDMMIN--LGILPIINENDATA  133 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEE-----EE-CTGGGGC-HHHHHHHHHHHHHHHH--TTCEEEEEECTTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEE-----Ee-ccchhcC-cceEehHHHHHHHHHH--CCCEEEEeCCCcee
Confidence            44567889999999999999999999998643     22 2211211 0111223367788888  88999998652221


Q ss_pred             CCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHH--HHHHHHh-----cCCCcccH
Q 020388          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ--EAWEMSY-----FGANVLHP  186 (327)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~--ea~~l~~-----~g~~v~~p  186 (327)
                      . ++.   .++++|++|+.+|.+|+|+++++||||||||++||+++|++++++++++.  |+.+++.     +|+++|.|
T Consensus       134 ~-~~~---~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~  209 (251)
T 2ako_A          134 I-EEI---VFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVT  209 (251)
T ss_dssp             C-HHH---HBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHH
T ss_pred             e-cce---eecCchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHH
Confidence            1 111   36789999999999999999999999999999999999999999999998  9988865     67787887


Q ss_pred             h--hHHHHHhCCCCEEEeecCCC
Q 020388          187 R--TIIPVMRYDIPIVIRNIFNL  207 (327)
Q Consensus       187 ~--a~~~a~~~~I~v~I~n~~~~  207 (327)
                      +  |+..|.++|+|++|.|++.|
T Consensus       210 k~~aa~~a~~~gv~v~I~~g~~~  232 (251)
T 2ako_A          210 KLKAAKFLLEHNKKMFLASGFDL  232 (251)
T ss_dssp             HHHHHHHHHHTTCEEEEEESSSC
T ss_pred             HHHHHHHHHHCCCeEEEEeCCCh
Confidence            4  89999999999999987654

>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}

Probab=99.86  E-value=3.2e-21  Score=176.78  Aligned_cols=155  Identities=15%  Similarity=0.155  Sum_probs=116.5

Q ss_pred             HHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCC
Q 020388           37 DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDN  116 (327)
Q Consensus        37 d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g  116 (327)
                      +..-..+..+++.++...|.++|+++..+.+.+...+.     +.   +  ....+..+++  .+.|||++|+     .|
T Consensus        91 ~~~~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t~~~~~-----~~---~--~~~~~~~lL~--~g~IpVi~~~-----~g  153 (256)
T 2va1_A           91 DNMGMMATIINGLALENALNHLNVNTIVLSAIKCDKLV-----HE---S--SANNIKKAIE--KEQVMIFVAG-----TG  153 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCCTTTC-----EE---C--CHHHHHHHHH--TTCEEEEEST-----TS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeccccc-----ch---h--hHHHHHHHHh--CCcEEEEECC-----CC
Confidence            33444556778888899999999999988866542211     11   1  2233367887  8999999982     23


Q ss_pred             CeeeecCCcchHHHHHHHHHhCCceEEEeec-cCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhC
Q 020388          117 IPTTLKRDGSDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRY  195 (327)
Q Consensus       117 ~~~~lgrggsD~~A~~lA~~l~A~~l~~~tD-V~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~  195 (327)
                      .    .++++|++|+.+|.+|+|+++++||| |||||++||+++|+++++++++++|+.++   +.++|+++|+..|.++
T Consensus       154 ~----~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGVy~~dP~~~p~a~~i~~is~~e~~~~---~~~~mk~~aa~~a~~~  226 (256)
T 2va1_A          154 F----PYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---NLKVMDATALALCQEN  226 (256)
T ss_dssp             S----SSCCHHHHHHHHHHHHTCSEEEEEESSCCSBCSCC--------CBSEEEHHHHHHH---TCCSSCHHHHHHHHHT
T ss_pred             C----CCCChhHHHHHHHHhCCCCEEEEeecccCeEEcCCCCCCCCCEEccEEcHHHHHHh---ccCCccHHHHHHHHHC
Confidence            2    24678999999999999999999999 99999999999999999999999999887   4678899999999999


Q ss_pred             CCCEEEeecCCCC---------CCceEEe
Q 020388          196 DIPIVIRNIFNLS---------VPGIMIC  215 (327)
Q Consensus       196 ~I~v~I~n~~~~e---------~~GT~I~  215 (327)
                      |+|++|.|+++|+         ..||+|.
T Consensus       227 gv~v~I~~g~~~~~l~~~l~g~~~GT~i~  255 (256)
T 2va1_A          227 NINLLVFNIDKPNAIVDVLEKKNKYTIVS  255 (256)
T ss_dssp             TCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred             CCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence            9999999987543         4588874

>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*

Probab=99.85  E-value=8e-22  Score=183.64  Aligned_cols=156  Identities=13%  Similarity=0.032  Sum_probs=124.0

Q ss_pred             HhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCC
Q 020388           38 FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI  117 (327)
Q Consensus        38 ~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~  117 (327)
                      ..++.|+-.....+...|.++|+++..+.+.+..++.++   ...++.    +.++.+++  .+.|||++||++.+++|.
T Consensus        93 ~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~t~dg---~~~~~~----~~i~~lL~--~g~IpVi~gd~~~~~~g~  163 (286)
T 3d40_A           93 AGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCTLRNG---IPQLRS----EVLRDVLD--HGALPVLAGDALFDEHGK  163 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEETT---EEEECC----SHHHHHHH--TTCEEEEECEEEEBTTSC
T ss_pred             hcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCcccCC---eEEehH----HHHHHHHH--CcCEEEEcCCeEEcCCCC
Confidence            456777777788999999999999999988766543221   122333    67888888  899999999888888887


Q ss_pred             eeeecCCcchHHHHHHHHH-hCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh--------cCCCcccH--
Q 020388          118 PTTLKRDGSDFSAAIMGAL-LRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--------FGANVLHP--  186 (327)
Q Consensus       118 ~~~lgrggsD~~A~~lA~~-l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~--------~g~~v~~p--  186 (327)
                      +   .++++|++|+.+|.+ |+|++|+|||||||||++||+   ++++|+++++.|+.++..        ++.++|+|  
T Consensus       164 ~---~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl  237 (286)
T 3d40_A          164 L---WAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKL  237 (286)
T ss_dssp             E---EEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHH
T ss_pred             E---EeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHH
Confidence            5   346799999999999 999999999999999999998   799999999988766632        46789999  


Q ss_pred             hhHHHHHhCCCCEEEeecCCCC
Q 020388          187 RTIIPVMRYDIPIVIRNIFNLS  208 (327)
Q Consensus       187 ~a~~~a~~~~I~v~I~n~~~~e  208 (327)
                      +|+..|.++|+|++|.|+..|+
T Consensus       238 ~Aa~~a~~~gv~v~I~~g~~p~  259 (286)
T 3d40_A          238 DALVTCARRGAECFIMRGDPGS  259 (286)
T ss_dssp             HHHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHHCCCcEEEEeCCCCC
Confidence            5899999999999999987654

>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3

Probab=99.84  E-value=2e-20  Score=167.33  Aligned_cols=147  Identities=25%  Similarity=0.301  Sum_probs=118.6

Q ss_pred             ChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCcee
Q 020388           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (327)
Q Consensus        32 ~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~  111 (327)
                      ++...+.+.+.++.+++.++...|+.. +.             .     ..++.    +.++++++  .+.|||++|   
T Consensus        58 ~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~-------------~-----~~~~~----~~i~~ll~--~g~ipVi~~---  109 (219)
T 2ij9_A           58 SETFCDYIGIAATRLNAMLLISAIPSA-AK-------------K-----VPVDF----MEAEELSK--LYRVVVMGG---  109 (219)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHCTTB-CS-------------S-----CCSSH----HHHHHHHT--TCSEEEECC---
T ss_pred             CccchHHHHHHHHHHHHHHHHHHHHHh-cC-------------C-----CcCCH----HHHHHHHH--CCCEEEEeC---
Confidence            456667778888899999988766543 10             0     11344    67888888  899999998   


Q ss_pred             cCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhc-CC-----Cccc
Q 020388          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GA-----NVLH  185 (327)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~-g~-----~v~~  185 (327)
                          |..    ++++|++|+.+|.+|+|+++++||||||||++||+++|++++++++++.|+.+++.. |.     .+++
T Consensus       110 ----g~~----~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~  181 (219)
T 2ij9_A          110 ----TFP----GHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVID  181 (219)
T ss_dssp             ----CSS----SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCCCCSC
T ss_pred             ----CCC----CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchH
Confidence                222    356899999999999999999999999999999999999999999999999999765 44     7889


Q ss_pred             HhhHHHHHhCCCCEEEeecCCC---------CCCceEEe
Q 020388          186 PRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (327)
Q Consensus       186 p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~  215 (327)
                      +.|++.+.+.++|++|.|+ +|         +..||.|.
T Consensus       182 ~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~  219 (219)
T 2ij9_A          182 LLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA  219 (219)
T ss_dssp             HHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred             HHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence            9999999999999999986 43         34688873

>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}

Probab=99.84  E-value=2e-20  Score=175.10  Aligned_cols=160  Identities=15%  Similarity=0.171  Sum_probs=129.0

Q ss_pred             hhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCC------CCC----CCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS------SNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (327)
Q Consensus        41 s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~------~~~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi  110 (327)
                      +.|+.  ...++..|.+.|++++++++.+..+.....      +++    ..++.    +.++++++  .+.|||++|+ 
T Consensus       113 ~~G~~--n~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~----~~i~~lL~--~g~IpVi~~v-  183 (298)
T 2rd5_A          113 LVGKV--NKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDP----SVLRPLVD--YGYIPVIASV-  183 (298)
T ss_dssp             HHHTH--HHHHHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEECG----GGHHHHHH--TTCEEEEESE-
T ss_pred             HhchH--HHHHHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEECH----HHHHHHHh--CCCEEEEcCe-
Confidence            35887  457899999999999999987543322111      221    12344    67888888  8999999997 


Q ss_pred             ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--CCcccHh-
Q 020388          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR-  187 (327)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~~v~~p~-  187 (327)
                      +.++.|+.+++   ++|++|+.+|.+|+|+++++||||||||++||+  | +++|++++++|+.+++..|  .++|+|| 
T Consensus       184 ~~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl  257 (298)
T 2rd5_A          184 AADDSGQAYNI---NADTVAGELAAALGAEKLILLTDVAGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKV  257 (298)
T ss_dssp             EECTTSCEEEE---CHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHH
T ss_pred             eECCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHH
Confidence            88888988877   489999999999999999999999999999998  4 8999999999999998754  5789995 


Q ss_pred             -hHHHHHhCCCC-EEEeecCCCC----------CCceEEe
Q 020388          188 -TIIPVMRYDIP-IVIRNIFNLS----------VPGIMIC  215 (327)
Q Consensus       188 -a~~~a~~~~I~-v~I~n~~~~e----------~~GT~I~  215 (327)
                       |+..|.++|++ ++|.|+..|+          ..||.|.
T Consensus       258 ~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~  297 (298)
T 2rd5_A          258 KCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMIT  297 (298)
T ss_dssp             HHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEE
T ss_pred             HHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEe
Confidence             88888999998 9999886543          3588875

>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*

Probab=99.83  E-value=3.9e-20  Score=174.89  Aligned_cols=170  Identities=15%  Similarity=0.147  Sum_probs=132.7

Q ss_pred             hhHHHHh--hhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCC-----CCCC----CCCCchHHHHHHHHHhhcCCC
Q 020388           33 ESFTDFV--VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-----SSNQ----VDPDFSESEKRLEKWFSQSPS  101 (327)
Q Consensus        33 ~~~~d~v--~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~-----~~~~----~~~~~~~~~~~i~~~l~~~~~  101 (327)
                      +...+.+  ++.|+.  ...++..|++.|++++++++.+..+....     .+++    ..++.    +.|+++++  .|
T Consensus       116 ~~~l~~~~~~~~G~i--n~~l~~~L~~~g~~a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~~----~~i~~lL~--~g  187 (321)
T 2v5h_A          116 ADTMEVVEMVLVGRV--NKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNS----EVIEPLLE--RG  187 (321)
T ss_dssp             HHHHHHHHHHHHHTH--HHHHHHHHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEEECG----GGTHHHHH--TT
T ss_pred             HHHHHHHHHHHhChH--HHHHHHHHHhCCCCeeeeChhhccEEEeecCCCccccccceeEEecH----HHHHHHHH--CC
Confidence            4445544  346876  55688999999999999987753222211     2332    12344    67788888  89


Q ss_pred             ceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC-
Q 020388          102 NTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG-  180 (327)
Q Consensus       102 ~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g-  180 (327)
                      .|||+++ ++.++.|...++   ++|++|+.+|.+|+|++++|+|||||||++||+   ++++|++++++|+.+++..| 
T Consensus       188 ~IpVi~~-v~~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~---~a~~i~~is~~e~~~l~~~g~  260 (321)
T 2v5h_A          188 YIPVISS-VAADENGQSFNI---NADTVAGEIAAALNAEKLILLTDTRGILEDPKR---PESLIPRLNIPQSRELIAQGI  260 (321)
T ss_dssp             CEEEEES-EEECTTSCEEEC---CHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC---TTCBCCEEEHHHHHHHHHTTS
T ss_pred             CeEEEeC-ceECCCCCEEEe---CHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC---CCeeeeEEcHHHHHHHHhCCC
Confidence            9999996 488888876533   589999999999999999999999999999998   58999999999999998754 


Q ss_pred             -CCcccH--hhHHHHHhCCCC-EEEeecCCC----------CCCceEEeCC
Q 020388          181 -ANVLHP--RTIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRP  217 (327)
Q Consensus       181 -~~v~~p--~a~~~a~~~~I~-v~I~n~~~~----------e~~GT~I~~~  217 (327)
                       +++|+|  +|+..|.++|++ ++|.|+..|          +..||+|.+.
T Consensus       261 ~~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~  311 (321)
T 2v5h_A          261 VGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS  311 (321)
T ss_dssp             SCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC
T ss_pred             CcCcHHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECC
Confidence             688999  488999999999 999987544          3469999764

>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*

Probab=99.83  E-value=2.7e-20  Score=170.71  Aligned_cols=157  Identities=14%  Similarity=0.099  Sum_probs=124.4

Q ss_pred             hhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCC-------CCCC-CCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-------SSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (327)
Q Consensus        41 s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~-------~~~~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~  112 (327)
                      +.++.+++.++. .|+++|+++..+++.+..++++.       ..|+ ..++.    +.++.+++  .+.|||++|+ +.
T Consensus        79 ~l~~~~n~~l~~-~l~~~G~~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~----~~i~~ll~--~g~ipVi~~~-g~  150 (258)
T 1gs5_A           79 ALAGTANKTLLA-WAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSP----KLINSLLE--NGYLPVVSSI-GV  150 (258)
T ss_dssp             HHHTHHHHHHHH-HHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCC----HHHHHHHH--TTCEEEECSE-EE
T ss_pred             HHhccchHHHHH-HHHHCCCCeEEEeecCCCEEEEEEcCCCCCCcCceeEECH----HHHHHHHH--CCCEEEEeCC-cC
Confidence            345567777764 67999999999999886444331       1122 23556    77888888  8999999998 88


Q ss_pred             CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCC--Cccc---Hh
Q 020388          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA--NVLH---PR  187 (327)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~--~v~~---p~  187 (327)
                      +..|+++++   ++|++|+.+|.+|+|+ +++||||||||++|      ++++++++++|+.+++..|.  .+|.   +.
T Consensus       151 ~~~g~~~~~---~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~  220 (258)
T 1gs5_A          151 TDEGQLMNV---NADQAATALAATLGAD-LILLSDVSGILDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNA  220 (258)
T ss_dssp             CTTSCEEEC---CHHHHHHHHHHHHTCE-EEEEESSSSCBCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHH
T ss_pred             CCCCcEEEe---cHHHHHHHHHHHhCCc-EEEEeCCCceECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHH
Confidence            889998876   5899999999999999 99999999999975      57899999999999986543  4454   45


Q ss_pred             hHHHHHhCCCCEEEeecCCC---------CCCceEEe
Q 020388          188 TIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (327)
Q Consensus       188 a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~  215 (327)
                      |++.+.+.++|++|.|++.|         +..||.|.
T Consensus       221 a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~  257 (258)
T 1gs5_A          221 ALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL  257 (258)
T ss_dssp             HHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred             HHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence            88888888999999997654         34688874

>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}

Probab=99.82  E-value=7.6e-20  Score=168.89  Aligned_cols=152  Identities=16%  Similarity=0.204  Sum_probs=115.0

Q ss_pred             hhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCe
Q 020388           39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIP  118 (327)
Q Consensus        39 v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~  118 (327)
                      ..+.|.  +..++...|.++|++.          ++       ..|+    +.++++++  .+.|||++|+.+.+.....
T Consensus       104 ~~a~G~--~~l~~~~~l~~~G~~~----------vt-------~~d~----~~i~~lL~--~g~ipVi~g~~g~~~~~~~  158 (270)
T 2ogx_B          104 SSVADQ--NAAMLGQLLAKHGIPV----------VG-------GAGL----SAVPLSLA--EVNAVVFSGMPPYKLWMRP  158 (270)
T ss_dssp             HHHHHH--HHHHHHHHHGGGTCCB----------CC-------SSTT----CHHHHHCT--TCCEEEEECSCTTGGGCCC
T ss_pred             HHHHHH--HHHHHHHHHHhcCCce----------ec-------HhhH----HHHHHHHh--CCCEEEEeCCccccccccc
Confidence            444553  3556667777788761          12       1334    45788887  8999999999775521111


Q ss_pred             eeec---CCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHh-
Q 020388          119 TTLK---RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR-  194 (327)
Q Consensus       119 ~~lg---rggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~-  194 (327)
                      +..|   ++++|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.+++..| .++++.+...+.. 
T Consensus       159 ~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~g-~~~~ggm~~kl~aa  237 (270)
T 2ogx_B          159 AAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHD-SILEFPVLDLLQSA  237 (270)
T ss_dssp             CSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTCCC-TTSCHHHHHHHHHC
T ss_pred             cccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhcCC-CcccHHHHHHHHHh
Confidence            1222   3789999999999999999999999999999999999999999999999999998644 5677766665554 


Q ss_pred             -CCCCEEEeecCCCC---------CCceEEeC
Q 020388          195 -YDIPIVIRNIFNLS---------VPGIMICR  216 (327)
Q Consensus       195 -~~I~v~I~n~~~~e---------~~GT~I~~  216 (327)
                       .+++++|.|++.|+         ..||+|.+
T Consensus       238 ~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~  269 (270)
T 2ogx_B          238 QHVREVQVVNGLVPGNLTRALAGEHVGTIITA  269 (270)
T ss_dssp             SSCCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred             hcCCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence             57799999987654         56999864

>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2

Probab=99.82  E-value=1.3e-19  Score=168.22  Aligned_cols=158  Identities=18%  Similarity=0.137  Sum_probs=126.6

Q ss_pred             hhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCC------CCCC----CCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (327)
Q Consensus        41 s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~------~~~~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi  110 (327)
                      +.|+.  ...+...|++.|++++++++.+..+....      .+++    ..++.    +.++++++  .+.|||++|+ 
T Consensus        98 ~~G~~--~~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~----~~i~~ll~--~g~IpVi~~v-  168 (282)
T 2bty_A           98 LVGKI--NKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNP----EILHALIE--NDYIPVIAPV-  168 (282)
T ss_dssp             HHHTH--HHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECT----HHHHHHHH--TTCEEEEESE-
T ss_pred             HhhHH--HHHHHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEecH----HHHHHHHH--CCCEEEECCC-
Confidence            36887  55689999999999999987754322211      1232    12444    78888998  8999999997 


Q ss_pred             ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--CCcccH--
Q 020388          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP--  186 (327)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~~v~~p--  186 (327)
                      +.++.|..+++   ++|++|+.+|.+|+|+++++||||||||++ |      +++++++++|+.+++..|  .++|.|  
T Consensus       169 ~~~~~G~~~~~---~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~-~------~~i~~i~~~e~~~~~~~g~~~gGM~~K~  238 (282)
T 2bty_A          169 GIGEDGHSYNI---NADTAAAEIAKSLMAEKLILLTDVDGVLKD-G------KLISTLTPDEAEELIRDGTVTGGMIPKV  238 (282)
T ss_dssp             EECSSSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSSCEET-T------EECCEECHHHHHHHHTTTCSCTTHHHHH
T ss_pred             ccCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCCCeecC-c------hhhhhCCHHHHHHHHHcCCCCCcHHHHH
Confidence            88888988776   589999999999999999999999999997 3      899999999999998755  467887  


Q ss_pred             hhHHHHHhCCCC-EEEeecCCCC----------CCceEEeCC
Q 020388          187 RTIIPVMRYDIP-IVIRNIFNLS----------VPGIMICRP  217 (327)
Q Consensus       187 ~a~~~a~~~~I~-v~I~n~~~~e----------~~GT~I~~~  217 (327)
                      +|+..|.++|+| ++|.|+..|.          ..||.|.++
T Consensus       239 ~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~  280 (282)
T 2bty_A          239 ECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL  280 (282)
T ss_dssp             HHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred             HHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeC
Confidence            488999999998 9999876443          469999653

>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*

Probab=99.80  E-value=3e-19  Score=163.09  Aligned_cols=152  Identities=16%  Similarity=0.169  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCC
Q 020388           45 LWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRD  124 (327)
Q Consensus        45 ~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrg  124 (327)
                      .++..+ ...|+++|+++.++++.++...     ++.  +.    +.++.+++  .+.|||++|+++.+.+|..++   +
T Consensus        83 ~ln~~~-v~~l~~~G~~a~~l~~~~~~~~-----g~v--~~----~~i~~ll~--~g~ipVi~~~~~~~~~~~~~~---~  145 (249)
T 3ll5_A           83 NLDLMV-IDAMIEMGMRPISVPISALRYD-----GRF--DY----TPLIRYID--AGFVPVSYGDVYIKDEHSYGI---Y  145 (249)
T ss_dssp             HHHHHH-HHHHHHTTCCEEECCGGGSCBS-----SSB--CC----HHHHHHHH--TTCEEEEECEEEEEETTEEEE---E
T ss_pred             HHHHHH-HHHHHHCCCcEEEEcHHHcccc-----cEE--cH----HHHHHHHH--CCCEEEECCCEEEcCCCceee---e
Confidence            344444 4889999999999999887542     222  55    78888998  899999999888776666544   3


Q ss_pred             cchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHH--hcCCCcccHh--hHHHH-HhCCCCE
Q 020388          125 GSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS--YFGANVLHPR--TIIPV-MRYDIPI  199 (327)
Q Consensus       125 gsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~--~~g~~v~~p~--a~~~a-~~~~I~v  199 (327)
                      ++|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++ +++....  ..+.++|.||  ++..+ .++|+++
T Consensus       146 ~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~-~~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v  224 (249)
T 3ll5_A          146 SGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID-TNITFDRVQNDVTGGIGKKFESMVKMKSSVKNGV  224 (249)
T ss_dssp             CHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEEC-CCC-------------HHHHHHHHHHHTTCTTCE
T ss_pred             cHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHH-HHHhcccCCCeeECCHHHHHHHHHHHHHhcCCEE
Confidence            589999999999999999999999999999999999999999994 2222222  2456889996  55555 8899999


Q ss_pred             EEeecCCC--------CCC-ceEE
Q 020388          200 VIRNIFNL--------SVP-GIMI  214 (327)
Q Consensus       200 ~I~n~~~~--------e~~-GT~I  214 (327)
                      +|.++..|        +.. ||.|
T Consensus       225 ~I~~g~~~~~l~~l~g~~~~GT~i  248 (249)
T 3ll5_A          225 YLINGNHPERIGDIGKESFIGTVI  248 (249)
T ss_dssp             EEEETTSGGGGGGTTSTTCCSEEE
T ss_pred             EEEeCCChhHHHHhCCCCCCCEEe
Confidence            99997543        334 7776

>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}

Probab=99.80  E-value=2.6e-19  Score=165.80  Aligned_cols=148  Identities=14%  Similarity=0.256  Sum_probs=124.9

Q ss_pred             HHHHHHHHHcCCceeEEcccceeeccCCCC-----CC----CCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCee
Q 020388           49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSS-----NQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPT  119 (327)
Q Consensus        49 ~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~-----~~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~  119 (327)
                      ..+.+.|++.|+++..+++.+..+++...+     ++    ..++.    +.|+.+++  .+.|||++| ++.+++|..+
T Consensus       117 ~~i~~~L~~~G~~a~~l~g~dg~llta~~~~~~d~g~vG~i~~v~~----~~i~~lL~--~g~IPVi~~-v~~~~~G~~~  189 (279)
T 3l86_A          117 KNLQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINK----RVIEEFLE--NRQIPILAS-LGYSKEGDML  189 (279)
T ss_dssp             HHHHHHHHHTTCCEEECSGGGGGTEEEEESCHHHHBSBEEEEEECH----HHHHHHHH--TTCEEEEES-EEECTTSCEE
T ss_pred             HHHHHHHHhCCCCEEEEecCcCCEEEeeccCccccCcccccchhhH----HHHHHHHh--CCcEEEECC-cEECCCCCEe
Confidence            778999999999999999988655554322     21    12444    88899998  899999999 7889889887


Q ss_pred             eecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--CCcccH--hhHHHHHhC
Q 020388          120 TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP--RTIIPVMRY  195 (327)
Q Consensus       120 ~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~~v~~p--~a~~~a~~~  195 (327)
                      ++   ++|++|+.+|.+|+|++++|+|||||||+       ++++|++++++|+.+++..|  .++|.|  +|+..|.++
T Consensus       190 ~i---~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~  259 (279)
T 3l86_A          190 NI---NADYLATAVAVALAADKLILMTNVKGVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAA  259 (279)
T ss_dssp             EC---CHHHHHHHHHHHTTCSEEEEECSSSSCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHT
T ss_pred             ec---CHHHHHHHHHHHcCCCEEEEEeCCCcccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHc
Confidence            76   58999999999999999999999999994       47899999999999998644  678999  588999999


Q ss_pred             CCC-EEEeecCCCCCCceEEeC
Q 020388          196 DIP-IVIRNIFNLSVPGIMICR  216 (327)
Q Consensus       196 ~I~-v~I~n~~~~e~~GT~I~~  216 (327)
                      |++ ++|.+++..   ||+|..
T Consensus       260 Gv~~v~I~~~~~~---GT~i~~  278 (279)
T 3l86_A          260 GVGQVLIGDNLLT---GTLITA  278 (279)
T ss_dssp             TCSEEEEESSSSC---SEEEEC
T ss_pred             CCCEEEEeccCCC---CeEEec
Confidence            998 999999874   999964

>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2

Probab=99.79  E-value=1.9e-18  Score=161.81  Aligned_cols=167  Identities=15%  Similarity=0.198  Sum_probs=131.1

Q ss_pred             hhHHHHh--hhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCC-----------------CCCCC----CCCchHHH
Q 020388           33 ESFTDFV--VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT-----------------SSNQV----DPDFSESE   89 (327)
Q Consensus        33 ~~~~d~v--~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~-----------------~~~~~----~~~~~~~~   89 (327)
                      +...+.+  ++.|+.  ...++..|++.|++++.+++.+..+.+..                 .+++.    .++.    
T Consensus        93 ~~~l~~~~~~~~G~~--~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~----  166 (300)
T 2buf_A           93 AATMDVVEMVLGGQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNV----  166 (300)
T ss_dssp             HHHHHHHHHHHHHTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECH----
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEEECH----
Confidence            4445544  446887  78899999999999999987643222111                 12221    2333    


Q ss_pred             HHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecC
Q 020388           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is  169 (327)
                      +.++.+++  .+.|||+++ ++.++.|...++   ++|++|+.+|.+|+|+++++||||||||++      +++++++++
T Consensus       167 ~~i~~lL~--~g~IpVi~~-v~~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~------~a~~i~~i~  234 (300)
T 2buf_A          167 GLLNMLVK--GDFIPVIAP-IGVGSNGESYNI---NADLVAGKVAEALKAEKLMLLTNIAGLMDK------QGQVLTGLS  234 (300)
T ss_dssp             HHHHHHHH--TTCEEEEEE-EEECTTSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSCCBCT------TSCBCCEEC
T ss_pred             HHHHHHHH--CCCEEEEcC-ceeCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCCCeECC------CCcChhhCC
Confidence            77888898  899999996 488888887765   489999999999999999999999999987      378999999


Q ss_pred             HHHHHHHHhcC--CCcccH--hhHHHHHhCCCC-EEEeecCCC----------CCCceEEeCC
Q 020388          170 YQEAWEMSYFG--ANVLHP--RTIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRP  217 (327)
Q Consensus       170 ~~ea~~l~~~g--~~v~~p--~a~~~a~~~~I~-v~I~n~~~~----------e~~GT~I~~~  217 (327)
                      +.|+.+++..|  +++|+|  +|+..|.++|++ ++|.|+..|          +..||+|.+.
T Consensus       235 ~~e~~~~~~~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~  297 (300)
T 2buf_A          235 TEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR  297 (300)
T ss_dssp             HHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred             HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeC
Confidence            99999998754  688999  588889999999 999987544          3469999754

>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1

Probab=99.77  E-value=5.7e-18  Score=159.55  Aligned_cols=119  Identities=17%  Similarity=0.140  Sum_probs=98.2

Q ss_pred             HHHHHHhhcCCCceEEecCceec----CCCCCeeeec---CCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCC
Q 020388           90 KRLEKWFSQSPSNTIIATGFIAS----TPDNIPTTLK---RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gfi~~----~~~g~~~~lg---rggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a  162 (327)
                      +.++.+++  .+.|||++|+.|.    +.++   ++|   ++++|++|+.+|.+|+|++++++|||||||++||  .|++
T Consensus       177 ~~i~~lL~--~g~IpV~~Gg~giPi~~~~d~---~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p--~~~a  249 (314)
T 1e19_A          177 ETIKKLVE--RGVIVIASGGGGVPVILEDGE---IKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEKE  249 (314)
T ss_dssp             HHHHHHHH--TTCEEECSGGGCEEEEEETTE---EEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STTC
T ss_pred             HHHHHHHH--CCCEEEEeCCCccCeEECCCC---cceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC--CCCC
Confidence            77889998  8999999986332    3332   455   3889999999999999999999999999999999  4899


Q ss_pred             eEEeecCHHHHHHHHhcC---CCcccHh---hHHHHHhCCCCEEEeec------CCCCCCceEEeC
Q 020388          163 VILRTLSYQEAWEMSYFG---ANVLHPR---TIIPVMRYDIPIVIRNI------FNLSVPGIMICR  216 (327)
Q Consensus       163 ~~i~~is~~ea~~l~~~g---~~v~~p~---a~~~a~~~~I~v~I~n~------~~~e~~GT~I~~  216 (327)
                      +++++++++|+.+++..|   .++|.||   |++.+.+.+++++|.+.      +.. ..||+|.+
T Consensus       250 ~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~~~l~~~~~g-~~GT~i~~  314 (314)
T 1e19_A          250 QWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEG-KTGTQVLP  314 (314)
T ss_dssp             EECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTT-SSSEEEEC
T ss_pred             eECCEECHHHHHHHHhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecHHHHHHHHcC-CCCeEEcC
Confidence            999999999999998754   4789997   66778888999999873      343 36999853

>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*

Probab=99.73  E-value=2.6e-17  Score=151.55  Aligned_cols=147  Identities=14%  Similarity=0.086  Sum_probs=112.7

Q ss_pred             HHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcch
Q 020388           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSD  127 (327)
Q Consensus        48 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD  127 (327)
                      ...+++.|+++|+++..+++.++...++.    ..++.    +.++.+++  .+.|||++||++.+.+|.+.+   +++|
T Consensus       100 n~~l~~~l~~~G~~a~~l~~~d~~~~~~g----~~v~~----~~i~~lL~--~g~ipVi~~~~~~~~~g~~~~---~~~D  166 (266)
T 3k4o_A          100 NNIIIDTLQSYDIPAVSIQPSSFVVFGDK----LIFDT----SAIKEMLK--RNLVPVIHGDIVIDDKNGYRI---ISGD  166 (266)
T ss_dssp             HHHHHHHHHTTTCCEEEECGGGTCEESSS----CBCCC----HHHHHHHH--TTCEEEEECEEEEESSSCEEE---ECHH
T ss_pred             HHHHHHHHHHCCCcEEEeeHHHcCcccCc----eEecH----HHHHHHHH--CCCEEEEeCCEEEcCCCCeee---eCHH
Confidence            34478999999999999999998766542    33566    88888998  899999999988887777643   5689


Q ss_pred             HHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHH--------hcCCCcccHh--hHHHHHhCCC
Q 020388          128 FSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS--------YFGANVLHPR--TIIPVMRYDI  197 (327)
Q Consensus       128 ~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~--------~~g~~v~~p~--a~~~a~~~~I  197 (327)
                      ++|+.+|.+|+|+++++|||||||| +||+      ++++++..|+.++.        ..+.++|.||  ++..+.+   
T Consensus       167 ~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~------~i~~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~a~~---  236 (266)
T 3k4o_A          167 DIVPYLANELKADLILYATDVDGVL-IDNK------PIKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKC---  236 (266)
T ss_dssp             HHHHHHHHHHTCSEEEEEESSSSSB-SSSS------BCSEECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHcCCCEEEEEecCCeEE-eCCe------ecCcCCHHHHHHHHHHhccccCCcccCCHHHHHHHHHHHhc---
Confidence            9999999999999999999999999 8876      45556554444443        2456779996  3333333   


Q ss_pred             CEEEeecCCC---------CCCceEEeCC
Q 020388          198 PIVIRNIFNL---------SVPGIMICRP  217 (327)
Q Consensus       198 ~v~I~n~~~~---------e~~GT~I~~~  217 (327)
                      +++|.++..|         +..||+|.+.
T Consensus       237 ~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  265 (266)
T 3k4o_A          237 RGFVFNGNKANNIYKALLGEVEGTEIDFS  265 (266)
T ss_dssp             EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred             CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence            9999997543         3569999764

>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}

Probab=99.70  E-value=7.2e-17  Score=152.18  Aligned_cols=118  Identities=19%  Similarity=0.223  Sum_probs=95.2

Q ss_pred             HHHHHHhhcCCCceEEecCce----ecCCCCCeeeecCC-----cchHHHHHHHHHhCCceEEEeeccCccccCCCCCCC
Q 020388           90 KRLEKWFSQSPSNTIIATGFI----ASTPDNIPTTLKRD-----GSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVS  160 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gfi----~~~~~g~~~~lgrg-----gsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~  160 (327)
                      +.|+.+++  .+.|||++|+-    +.+++|..    +|     ++|++|+.+|.+|+||.|+++|||||||+ ||+ .|
T Consensus       177 ~~i~~lL~--~g~IpI~~g~~g~pv~~~~~g~~----~g~~~~id~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p  248 (316)
T 2e9y_A          177 DLIAEASA--ESPAVVALGGGGVPVVERPGGVL----EPVEAVVDKDLASSLLATQLNADLLVILTDVPGVAV-NYG-RE  248 (316)
T ss_dssp             HHHHHHHH--HCSEEEECGGGCEEEEECTTSCE----EECSCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-ST
T ss_pred             HHHHHHHH--CCCEEEEECCCCCCeeECCCCCe----ecceeeeCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CC
Confidence            77888998  78999999753    33566632    23     68999999999999999999999999999 895 78


Q ss_pred             CCeEEeecCHHHHHHHHhc---CCCcccHh--hHHHHHhCCC-CEEEeecC------CCCCCceEEeC
Q 020388          161 EAVILRTLSYQEAWEMSYF---GANVLHPR--TIIPVMRYDI-PIVIRNIF------NLSVPGIMICR  216 (327)
Q Consensus       161 ~a~~i~~is~~ea~~l~~~---g~~v~~p~--a~~~a~~~~I-~v~I~n~~------~~e~~GT~I~~  216 (327)
                      +++++++++++|+.+++..   +.++|.||  ++..+.++|+ +++|.+..      .. ..||+|.+
T Consensus       249 ~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~~~~l~~~l~g-~~GT~i~~  315 (316)
T 2e9y_A          249 GERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQVLSL-QAGTVVML  315 (316)
T ss_dssp             TCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEESTTHHHHHTT-SSSEEEEC
T ss_pred             CCcCCcEEcHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECcHHHHHHHHcC-CCCeEEec
Confidence            9999999999999999763   45779886  6667778899 78887631      22 46898863

>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*

Probab=99.69  E-value=2e-16  Score=148.11  Aligned_cols=167  Identities=15%  Similarity=0.150  Sum_probs=124.1

Q ss_pred             hhHHHHh-hhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccC---CCCC---C-CCCCchHHHHHHHHHhhcCCCceE
Q 020388           33 ESFTDFV-VGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNP---TSSN---Q-VDPDFSESEKRLEKWFSQSPSNTI  104 (327)
Q Consensus        33 ~~~~d~v-~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~---~~~~---~-~~~~~~~~~~~i~~~l~~~~~~vp  104 (327)
                      ++..+.+ ..+|+ ++ ..++..|+++|++++++++.-+ ....   ..+|   + ..++.    +.|+.+++  .+.||
T Consensus       113 ~~~l~vv~m~~~~-vn-~~lv~~L~~~G~~Av~l~gg~~-~a~~~~~~d~g~~G~i~~v~~----~~i~~lL~--~g~Ip  183 (307)
T 3zzh_A          113 EHTMAVVRKCFLE-QN-LKLVTALEQLGVRARPITSGVF-TADYLDKDKYKLVGNIKSVTK----EPIEASIK--AGALP  183 (307)
T ss_dssp             HHHHHHHHHHHHH-HH-HHHHHHHHHTTCCEEEECSSSE-EEEESCHHHHBSBEEEEEECC----HHHHHHHH--HTCEE
T ss_pred             HHHHHHHHHHHHH-HH-HHHHHHHHhCCCCeeEEcCCcE-EEEecCccccCccccccccCH----HHHHHHHH--CCCEE
Confidence            3444544 34565 44 5568999999999999987422 2110   0122   2 34667    88889998  78999


Q ss_pred             EecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHH-HHHHHhc--CC
Q 020388          105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE-AWEMSYF--GA  181 (327)
Q Consensus       105 Vv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~e-a~~l~~~--g~  181 (327)
                      |++|+ +.+.+|+.+++   ++|++|+.+|.+|+|++++|+|||||||++     |++++++++++.| +.++...  +.
T Consensus       184 Vi~~~-g~~~~G~~~~i---~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~t  254 (307)
T 3zzh_A          184 ILTSL-AETASGQMLNV---NADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVK  254 (307)
T ss_dssp             EECCC-EECTTCBEEBC---CHHHHHHHHHHHHCCSEEEEECSSCSCEET-----TTTEECCEEEHHHHHHHHHTSTTSC
T ss_pred             EEeCC-eECCCCcEEec---CHHHHHHHHHHhCCCCEEEEEeCCcceecC-----CCCcCCcccCHHHHHHHHHhCCCCC
Confidence            99997 78888988776   589999999999999999999999999986     5689999999976 5677654  35


Q ss_pred             CcccHh--hHHHHHhC---CCCEEEeec-------CCCCCCceEEeCC
Q 020388          182 NVLHPR--TIIPVMRY---DIPIVIRNI-------FNLSVPGIMICRP  217 (327)
Q Consensus       182 ~v~~p~--a~~~a~~~---~I~v~I~n~-------~~~e~~GT~I~~~  217 (327)
                      ++|.||  +++.|.+.   +.++.|.+.       +..+..||.|.+.
T Consensus       255 GGM~~Kl~aa~~a~~~v~~g~~v~I~~~~~ll~elft~~g~GT~I~~~  302 (307)
T 3zzh_A          255 YGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRG  302 (307)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTCCEEEECGGGHHHHHHSCCCCSEEEECC
T ss_pred             CcHHHHHHHHHHHHHHhccCeEEEEeCccHHHHHHhcCCCCcEEEecC
Confidence            789996  44445444   788988774       2345679999764

>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*

Probab=99.66  E-value=4.4e-16  Score=153.53  Aligned_cols=166  Identities=15%  Similarity=0.089  Sum_probs=123.6

Q ss_pred             hhHHHHh-hhhcHHHHHHHHHHHHHHcCCce----eEEcccceeeccCCC--------CCC----CCCCchHHHHHHHHH
Q 020388           33 ESFTDFV-VGHGELWSAQMLAAVVRKNGIDC----KWMDTREVLIVNPTS--------SNQ----VDPDFSESEKRLEKW   95 (327)
Q Consensus        33 ~~~~d~v-~s~GE~~s~~l~~~~L~~~Gi~a----~~l~~~~~~~~~~~~--------~~~----~~~~~~~~~~~i~~~   95 (327)
                      +...+.+ .+.|+.  ...+.+.|. +|+++    +.+++.+..+.+...        ++.    ..++.    +.|+.+
T Consensus       109 ~~~l~~~~~~~G~~--~~~l~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~----~~i~~l  181 (456)
T 3d2m_A          109 ETSLGQAQQFAGTV--RSRFEAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDT----AALRFQ  181 (456)
T ss_dssp             HHHHHHHHHHHHHH--HHHHHHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEECH----HHHHHH
T ss_pred             HHHHHHHHHHHhHH--HHHHHHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEECH----HHHHHH
Confidence            3444443 334754  345677888 99998    777766633332111        121    12344    788899


Q ss_pred             hhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHH
Q 020388           96 FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE  175 (327)
Q Consensus        96 l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~  175 (327)
                      ++  .|.|||++++ +.+..|+..++   ++|++|+.+|.+|+|+.++++|||||||++      ++++++++++.|+.+
T Consensus       182 L~--~g~ipIi~~~-~~~~~g~~~~~---~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~------~~~~i~~i~~~e~~~  249 (456)
T 3d2m_A          182 LD--AGNIVWMPPL-GHSYGGKTFNL---DMVQAAASVAVSLQAEKLVYLTLSDGISRP------DGTLAETLSAQEAQS  249 (456)
T ss_dssp             HH--TTCEEEECSE-EECTTSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSSCBCT------TSCBCSEEEHHHHHH
T ss_pred             HH--CCCeEEECCc-ccCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEECCccccCC------CCCccccCCHHHHHH
Confidence            98  8999999996 77888888775   589999999999999999999999999986      588999999999999


Q ss_pred             HHhcCCCcccH--hhHHHHHhCCCC-EEEeecCCC----------CCCceEEeCC
Q 020388          176 MSYFGANVLHP--RTIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRP  217 (327)
Q Consensus       176 l~~~g~~v~~p--~a~~~a~~~~I~-v~I~n~~~~----------e~~GT~I~~~  217 (327)
                      ++..|.++|.|  +|+..|.++|++ ++|.++..|          +..||.|.+.
T Consensus       250 ~~~~g~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~  304 (456)
T 3d2m_A          250 LAEHAASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKE  304 (456)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECC
T ss_pred             HHhccCCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeecc
Confidence            98888899999  488888899996 999886432          3469999765

>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*

Probab=99.63  E-value=7e-15  Score=144.51  Aligned_cols=158  Identities=15%  Similarity=0.156  Sum_probs=121.7

Q ss_pred             hcHHHHHHHHHHHHHHcCCceeEEcccceeecc---CCCCCC----CCCCchHHHHHHHHHhhcCCCceEEecCceecCC
Q 020388           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN---PTSSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (327)
Q Consensus        42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~---~~~~~~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~  114 (327)
                      +|+ + ...++..|+++|++++++++.-+ ...   ...+|.    ..++.    +.|+.+++  .|.|||++|+ +.+.
T Consensus       123 ~~~-v-n~~lv~~L~~~G~~Avglsgg~~-~a~~~~~~d~g~vG~I~~v~~----~~I~~lL~--~G~IPVi~~~-g~~~  192 (464)
T 4ab7_A          123 FLE-Q-NLKLVTALEQLGVRARPITSGVF-TADYLDKDKYKLVGNIKSVTK----EPIEASIK--AGALPILTSL-AETA  192 (464)
T ss_dssp             HHH-H-HHHHHHHHHHTTCCEEEECSSSE-EEEESCTTTTBSBEEEEEECC----HHHHHHHH--TTCEEEEESE-EECT
T ss_pred             HHH-H-HHHHHHHHHhCCCCeEEECCCcE-EEEecCccccCCcCcccccCH----HHHHHHHH--CCcEEEEcCC-cCCC
Confidence            454 3 45678999999999999987332 221   112332    34666    88899998  8999999997 8888


Q ss_pred             CCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHH-HHHHHhc--CCCcccHh--hH
Q 020388          115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE-AWEMSYF--GANVLHPR--TI  189 (327)
Q Consensus       115 ~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~e-a~~l~~~--g~~v~~p~--a~  189 (327)
                      +|+++++   ++|++|+.+|.+|+|++++++|||||||++     |++++|+++++.| +.++...  +.++|.||  ++
T Consensus       193 ~G~~~ni---~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa  264 (464)
T 4ab7_A          193 SGQMLNV---NADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREI  264 (464)
T ss_dssp             TCBEEEC---CHHHHHHHHHHHHCCSEEEEEESSCSEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             CCCEEEe---cHHHHHHHHHHHcCCCEEEEEecccccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence            8988876   589999999999999999999999999986     4689999999976 5667654  35789997  56


Q ss_pred             HHHHhC---CCCEEEeec-------CCCCCCceEEeCC
Q 020388          190 IPVMRY---DIPIVIRNI-------FNLSVPGIMICRP  217 (327)
Q Consensus       190 ~~a~~~---~I~v~I~n~-------~~~e~~GT~I~~~  217 (327)
                      ..|.+.   +.++.|.+.       +..+..||.|.+.
T Consensus       265 ~aa~~~v~~g~~v~I~~~~~ll~eLft~~g~GT~I~~~  302 (464)
T 4ab7_A          265 KELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRG  302 (464)
T ss_dssp             HHHHTTSCTTCEEEEEESTTHHHHTTSSSTTSEEEECC
T ss_pred             HHHHHhcccCcEEEEecChHHHHHHhcCCCCceEEecC
Confidence            666654   778888773       2345679999876

>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*

Probab=99.63  E-value=1.4e-15  Score=142.96  Aligned_cols=119  Identities=16%  Similarity=0.193  Sum_probs=94.9

Q ss_pred             HHHHHHhhcCCCceEEecCceecC--C---CCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeE
Q 020388           90 KRLEKWFSQSPSNTIIATGFIAST--P---DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gfi~~~--~---~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~  164 (327)
                      +.|+.+++  .+.|||++|+.|..  +   .|+..   .+++|++|+.+|.+|+||+|+++|||||||+ || .+|++++
T Consensus       173 ~~i~~lL~--~g~IpIi~Gg~Gipv~~~~~~g~~~---~~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~~  245 (310)
T 2we5_A          173 ETINTLIK--NDIITISCGGGGIPVVGQELKGVEA---VIDKDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEKQ  245 (310)
T ss_dssp             HHHHHHHH--TTCEEECCGGGCEEEETTTTEECCC---CCCHHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCEE
T ss_pred             HHHHHHHH--CCCEEEEECCCCCCCcCCCCCCcEe---ecCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCeE
Confidence            78899998  89999999874422  1   23332   2468999999999999999999999999999 88 4889999


Q ss_pred             EeecCHHHHHHHHhcC---CCcccHh--hHHHHHhCCC--CEEEeec------CCCCCCceEEe
Q 020388          165 LRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI--PIVIRNI------FNLSVPGIMIC  215 (327)
Q Consensus       165 i~~is~~ea~~l~~~g---~~v~~p~--a~~~a~~~~I--~v~I~n~------~~~e~~GT~I~  215 (327)
                      +++++++|+.+++..|   .++|.||  |+..|.++|+  +++|.+.      +..+..||+|.
T Consensus       246 i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~~~~l~~~l~g~~~GT~i~  309 (310)
T 2we5_A          246 LTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSGDEIVGTVVT  309 (310)
T ss_dssp             CCEEEHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEECSGGGGGCBTTBCCSEEEE
T ss_pred             CCEEcHHHHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECcHHHHHHHHcCCCCCeEEe
Confidence            9999999999997644   4779996  7777778898  7888752      23345688875

>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}

Probab=99.60  E-value=4.3e-15  Score=138.66  Aligned_cols=122  Identities=14%  Similarity=0.128  Sum_probs=95.3

Q ss_pred             HHHHHHhhcCCCceEEecCceec---CCCCCee-eecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEE
Q 020388           90 KRLEKWFSQSPSNTIIATGFIAS---TPDNIPT-TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gfi~~---~~~g~~~-~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i  165 (327)
                      +.|+.+++  .+.|||++|+-|.   ++++..+ +...+++|++|+.+|.+|+||.|+|+|||||||+ ||+ .|++++|
T Consensus       179 ~~I~~LL~--~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I  254 (317)
T 3kzf_A          179 GVIKTLID--NNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKL  254 (317)
T ss_dssp             HHHHHHHH--TTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEEC
T ss_pred             HHHHHHHH--CCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeEC
Confidence            67888888  8999999976554   3444333 2335779999999999999999999999999999 999 5899999


Q ss_pred             eecCHHHHHHHHhc---CCCcccHh--hHHHH-HhCCCCEEEeecC------CCCCCceEEeC
Q 020388          166 RTLSYQEAWEMSYF---GANVLHPR--TIIPV-MRYDIPIVIRNIF------NLSVPGIMICR  216 (327)
Q Consensus       166 ~~is~~ea~~l~~~---g~~v~~p~--a~~~a-~~~~I~v~I~n~~------~~e~~GT~I~~  216 (327)
                      ++++++|+.++...   +.++|.||  |+..+ ...+.+++|.+..      +.+ .||+|.+
T Consensus       255 ~~it~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~~~l~~~l~G~-~GT~I~~  316 (317)
T 3kzf_A          255 EEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGK-CGTRIIK  316 (317)
T ss_dssp             CEEEHHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCGGGHHHHHTTS-SSEEEEC
T ss_pred             cCcCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcchHHHHHHHCCC-CCeEEec
Confidence            99999999998764   34689996  44444 5566789998863      333 6999875

>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*

Probab=99.58  E-value=2.2e-14  Score=141.13  Aligned_cols=158  Identities=13%  Similarity=0.105  Sum_probs=118.8

Q ss_pred             hcHHHHHHHHHHHHHHcCCceeEEccccee--eccCCCCCC----CCCCchHHHHHHHHHhhcCCCceEEecCceecCCC
Q 020388           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVL--IVNPTSSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (327)
Q Consensus        42 ~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~--~~~~~~~~~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~  115 (327)
                      +| .++..+ .+.|+++|++++++.+..+.  ..++..+|.    ..++.    +.|+.+++  .|.|||++++ +.+..
T Consensus       133 lg-~vn~~l-v~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~----~~i~~lL~--~g~IpVi~p~-g~~~~  203 (460)
T 3s6g_A          133 LT-QANLAL-VDAIRDAGGRAAAVPRGVFEADIVDADKLGRVGEPRHIHL----DLVGSAAR--AGQAAILACL-GETPD  203 (460)
T ss_dssp             HH-HHHHHH-HHHHHHTTCCEEEECSSSEEEEESCTTTTBSEEEEEEECC----HHHHHHHH--TTCEEEEECE-EECTT
T ss_pred             HH-HHHHHH-HHHHHhCCCCceEEecCeEEEEEecCcccCccCcceEEcH----HHHHHHHH--CCcEEEEECc-eECCC
Confidence            56 555444 56999999999999985441  112223332    34667    88899998  8999999986 77888


Q ss_pred             CCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHH-HHHHHHhc--CCCcccHh--hHH
Q 020388          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ-EAWEMSYF--GANVLHPR--TII  190 (327)
Q Consensus       116 g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~-ea~~l~~~--g~~v~~p~--a~~  190 (327)
                      |+.+++   ++|++|+.+|.+|+|++++++|||||||++      ++++|++++.. |+.++...  +.++|.||  |+.
T Consensus       204 G~~~~i---~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~  274 (460)
T 3s6g_A          204 GTLVNI---NADVAVRALVHALQPYKVVFLTGTGGLLDE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIK  274 (460)
T ss_dssp             CCEEEE---CHHHHHHHHHHHHCCSEEEEECSSCSCBCT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred             CcEEec---CHHHHHHHHHHHcCCCEEEEEeCCccccCC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence            988876   489999999999999999999999999985      47899999986 78888764  46789996  666


Q ss_pred             HHHhCCCCEEEeecC----------CCCCCceEEeCC
Q 020388          191 PVMRYDIPIVIRNIF----------NLSVPGIMICRP  217 (327)
Q Consensus       191 ~a~~~~I~v~I~n~~----------~~e~~GT~I~~~  217 (327)
                      .|.+...++.+.++.          ..+..||.|.+.
T Consensus       275 ~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~  311 (460)
T 3s6g_A          275 RLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRRG  311 (460)
T ss_dssp             HHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred             HHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence            666643245555543          334579999865

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=99.53  E-value=1.5e-14  Score=127.40  Aligned_cols=75  Identities=25%  Similarity=0.372  Sum_probs=70.6

Q ss_pred             CeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388          231 PVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (327)
Q Consensus       231 ~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (327)
                      ....+.+.+++|+|++||.||++.||+++|+|++|++.||||.||+  +|+.+|||+|+++|.++|+++||++|++.
T Consensus       105 ~~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs--tSEi~IS~vV~~~d~~~Av~aLH~~F~L~  179 (200)
T 4go7_X          105 GFSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIRISVLCRDTELDKAVVALHEAFGLG  179 (200)
T ss_dssp             CCSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHHTC-
T ss_pred             ceeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE--ccCCEEEEEEeHHHHHHHHHHHHHHhCCC
Confidence            3567899999999999999999999999999999999999999998  78999999999999999999999999764

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=99.49  E-value=3.6e-14  Score=120.43  Aligned_cols=119  Identities=18%  Similarity=0.153  Sum_probs=84.8

Q ss_pred             ccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCCCCCcchhhhhcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHH
Q 020388          184 LHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFG  263 (327)
Q Consensus       184 ~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~~~~~~~~~~~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~  263 (327)
                      +..+.+..+.++||++....+..  ..-|...++........+.. +....+++.+++|+|+++|.+|++.||+++++|+
T Consensus        34 ~~~~if~~La~~~I~vd~I~~s~--~~Isf~v~~~~~~~~il~~l-~~~~~v~~~~~~a~vsvvG~gm~~~~gv~a~~f~  110 (157)
T 3mah_A           34 FMRKLFEIFEFYQEPVDMVATSE--VGVSLTIDNDKNLPDIVRAL-SDIGDVTVDKDMVIICIVGDMEWDNVGFEARIIN  110 (157)
T ss_dssp             HHHHHHHHHHHTTCCCSCEECCS--SEEEEEESCCTTHHHHHHHH-TTTEEEEEEEEEEEEEEEC------CCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEEecC--CEEEEEECChHHHHHHHHHH-hccCeEEEeCCeEEEEEECCCcccCccHHHHHHH
Confidence            33456778888999876555432  11233333322111111111 2257889999999999999999999999999999


Q ss_pred             HHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388          264 AVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (327)
Q Consensus       264 ~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (327)
                      +|+  ||||.||+|++|+.+|+|+|+++|.++|+++||++|+..
T Consensus       111 aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~Lh~~f~~~  152 (157)
T 3mah_A          111 ALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIALSNKLFNS  152 (157)
T ss_dssp             TTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHHHHHHHC-
T ss_pred             HhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHHHHHHhcc
Confidence            999  999999999999999999999999999999999999865

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=99.48  E-value=8e-14  Score=120.76  Aligned_cols=127  Identities=21%  Similarity=0.279  Sum_probs=95.0

Q ss_pred             CCcccHhhHHHHHhCCCC--EEEeecCCCCCCceEEeCC--CCCCc---chhhh--hcCCeeeEEeecCeeEEEeecCCC
Q 020388          181 ANVLHPRTIIPVMRYDIP--IVIRNIFNLSVPGIMICRP--PVDEN---EDEQI--IDSPVKGFATIDNLALVNVEGTGM  251 (327)
Q Consensus       181 ~~v~~p~a~~~a~~~~I~--v~I~n~~~~e~~GT~I~~~--~~~~~---~~~~~--~~~~v~~i~~~~~la~IsIvG~~~  251 (327)
                      ..++-.+.+.++.++||+  .++.+.+.|+..+|.|+-.  ..+..   ..+..  ....+..+.+.+++|+|+++|.+|
T Consensus        26 ~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm  105 (178)
T 2dtj_A           26 KPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGM  105 (178)
T ss_dssp             STTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHTTTTTTTCSEEEEESCEEEEEEEEECC
T ss_pred             CccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHHHHHhcCCCeEEEeCCeEEEEEEcCCc
Confidence            344445678888899965  5555666555445666411  00000   00000  111356788999999999999999


Q ss_pred             CCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhc
Q 020388          252 AGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALN  309 (327)
Q Consensus       252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~  309 (327)
                      ++.||+++++|++|+++||||.||+  +|+.+|||+|+++|.++|+++||+.|+.+..
T Consensus       106 ~~~~Gv~arif~aLa~~~InI~~is--tSe~~Is~vV~~~d~~~Av~~Lh~~F~l~~~  161 (178)
T 2dtj_A          106 KSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHEQFQLGGE  161 (178)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEEGGGHHHHHHHHHHHHTCCSS
T ss_pred             ccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEEeHHHHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999998  6799999999999999999999999986543

>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}

Probab=99.47  E-value=4.6e-14  Score=139.03  Aligned_cols=167  Identities=12%  Similarity=0.115  Sum_probs=119.3

Q ss_pred             hhHHHHhh-hhcHHHHHHHHHHHHHHcCCceeEEcccce--eeccCCCCC---C-CCCCchHHHHHHHHHhhcCCCceEE
Q 020388           33 ESFTDFVV-GHGELWSAQMLAAVVRKNGIDCKWMDTREV--LIVNPTSSN---Q-VDPDFSESEKRLEKWFSQSPSNTII  105 (327)
Q Consensus        33 ~~~~d~v~-s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~--~~~~~~~~~---~-~~~~~~~~~~~i~~~l~~~~~~vpV  105 (327)
                      ++..+.+. ++| .++..+ .+.|+++|++++++.+..+  ...++..+|   + ..++.    +.|+.+++  .|.|||
T Consensus       126 ~~~l~vv~~~~g-~vn~~L-v~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~----~~i~~lL~--~g~IpV  197 (467)
T 3s6k_A          126 PHALAIVRKVFQ-ASNLKL-VEALQQNGARATSITGGVFEAEYLNRDTYGLVGEVKAVNL----APIEASLQ--AGSIPV  197 (467)
T ss_dssp             HHHHHHHHHHHH-HHHHHH-HHHHHHHTCCBCCCCSSSBCCCBSCSSSSBSBBCCCCBCC----HHHHTHHH--HTCBCC
T ss_pred             HHHHHHHHHHHH-HHHHHH-HHHHHhCCCCceEEcCccEEEEeccCcccCccceEEEEcH----HHHHHHHH--CCCEEE
Confidence            34444443 356 555555 5699999999999998544  111222333   2 35677    88888998  789999


Q ss_pred             ecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHH-HHHHHHhc--CCC
Q 020388          106 ATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ-EAWEMSYF--GAN  182 (327)
Q Consensus       106 v~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~-ea~~l~~~--g~~  182 (327)
                      +++. +.+..|+.+++   ++|++|+.+|.+|+|++++++|||||||+.|      ++++++++.. |+.++...  +.+
T Consensus       198 i~pv-g~~~~G~~~~i---~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~~------~~lI~~i~~~~e~~~l~~~~~~tG  267 (467)
T 3s6k_A          198 ITSL-GETPSGQILNV---NADFAANELVQELQPYKIIFLTGTGGLLDAE------GKLIDSINLSTEYDHLMQQPWING  267 (467)
T ss_dssp             CCSC-CCCSSSCCCBC---CHHHHHHHHHHHHCCSSCCCCCSSCSCCCSS------CCCCCCCCTTTTTHHHHTSSSCCS
T ss_pred             EECc-eECCCCcEEec---CHHHHHHHHHHhcCCCEEEEEecccceeCCC------CCCccccChHHHHHHHHhcCCCCC
Confidence            9953 44667887765   5899999999999999999999999999853      6788999885 77777653  467


Q ss_pred             cccHh--hHHHHHhCCCCEEEeecCCC----------CCCceEEeCC
Q 020388          183 VLHPR--TIIPVMRYDIPIVIRNIFNL----------SVPGIMICRP  217 (327)
Q Consensus       183 v~~p~--a~~~a~~~~I~v~I~n~~~~----------e~~GT~I~~~  217 (327)
                      +|.||  |+..|.+.+.++.+.++..|          +..||.|.+.
T Consensus       268 GM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~  314 (467)
T 3s6k_A          268 GMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRRG  314 (467)
T ss_dssp             HHHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred             chHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence            89996  66667664334666555432          3569999755

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=99.46  E-value=1.3e-13  Score=119.76  Aligned_cols=125  Identities=20%  Similarity=0.211  Sum_probs=93.2

Q ss_pred             CCCcccHhhHHHHHhCCCCEEEeecCCCCC-Cc-eEEe---CCCCCCcch---hhhh--cCCeeeEEeecCeeEEEeecC
Q 020388          180 GANVLHPRTIIPVMRYDIPIVIRNIFNLSV-PG-IMIC---RPPVDENED---EQII--DSPVKGFATIDNLALVNVEGT  249 (327)
Q Consensus       180 g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~-~G-T~I~---~~~~~~~~~---~~~~--~~~v~~i~~~~~la~IsIvG~  249 (327)
                      +..++..+-+..+.++||++.......++. .| +.|+   +.. +....   ++..  .-.+..+.+.+++|+|++||.
T Consensus        26 ~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~-~~~~a~~~L~~~~~el~~~~v~~~~~va~VsvVG~  104 (181)
T 3s1t_A           26 DIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD-VGPAAVEKLDSLRNEIGFSQLLYDDHIGKVSLIGA  104 (181)
T ss_dssp             SSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETT-THHHHHHHHHHTHHHHCCSEEEEESCEEEEEEEEE
T ss_pred             CCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehh-HHHHHHHHHHHHHHhcCcceEEEeCCEEEEEEEec
Confidence            344555667888889999876655443331 22 2332   221 11111   1100  013567889999999999999


Q ss_pred             CCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388          250 GMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (327)
Q Consensus       250 ~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (327)
                      ||++.||+++++|++|+++||||.||+  +|+.+|||+|+++|.++|+++||+.|+..
T Consensus       105 gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei~Is~vV~~~d~~~Av~aLH~~f~l~  160 (181)
T 3s1t_A          105 GMRSHPGVTATFCEALAAVGVNIELIS--TSEIRISVLCRDTELDKAVVALHEAFGLG  160 (181)
T ss_dssp             CCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEEGGGHHHHHHHHHHHHTCC
T ss_pred             ccccCchHHHHHHHHHHHCCCcEEEEE--cCCCEEEEEEeHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999  67999999999999999999999999754

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=99.38  E-value=6.9e-13  Score=113.59  Aligned_cols=122  Identities=19%  Similarity=0.232  Sum_probs=88.6

Q ss_pred             CcccHhhHHHHHhCCCCEEEeecCCCC-CCc-eEE---eCCCCCCc--chhh---hhcCCeeeEEeecCeeEEEeecCCC
Q 020388          182 NVLHPRTIIPVMRYDIPIVIRNIFNLS-VPG-IMI---CRPPVDEN--EDEQ---IIDSPVKGFATIDNLALVNVEGTGM  251 (327)
Q Consensus       182 ~v~~p~a~~~a~~~~I~v~I~n~~~~e-~~G-T~I---~~~~~~~~--~~~~---~~~~~v~~i~~~~~la~IsIvG~~~  251 (327)
                      .++-.+.+..+.++||++.......+. ..| +.|   .+..+...  ..+.   .... + .+.+.+++|+|+++|.+|
T Consensus        28 ~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~~~~~~~-~-~v~~~~~~a~vsvVG~gm  105 (167)
T 2dt9_A           28 PGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEPVLAEIG-G-EAILRPDIAKVSIVGVGL  105 (167)
T ss_dssp             TTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHHHHHHHC-C-EEEEECSEEEEEEEESSG
T ss_pred             CCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHHHHHHhC-C-cEEEeCCEEEEEEECCCc
Confidence            344456677888889987665544321 123 222   22211000  0011   0112 3 788899999999999999


Q ss_pred             CCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388          252 AGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (327)
Q Consensus       252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (327)
                      ++.||+++++|++|+++||||.||+  +|+.++||+|+++|.++|+++||+.|+..
T Consensus       106 ~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~is~vv~~~d~~~Av~~Lh~~f~~~  159 (167)
T 2dt9_A          106 ASTPEVPAKMFQAVASTGANIEMIA--TSEVRISVIIPAEYAEAALRAVHQAFELD  159 (167)
T ss_dssp             GGSTHHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHTC--
T ss_pred             ccCcCHHHHHHHHHHHCCCCEEEEE--ccCCEEEEEEeHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999998  67999999999999999999999999765

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=99.34  E-value=2.1e-12  Score=110.62  Aligned_cols=123  Identities=21%  Similarity=0.152  Sum_probs=90.1

Q ss_pred             CCcccHhhHHHHHhCCCCEEEeecCCCCCCc-e---EEeCCCCCC--cchhhhh--cCCeeeEEeecCeeEEEeecCCCC
Q 020388          181 ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG-I---MICRPPVDE--NEDEQII--DSPVKGFATIDNLALVNVEGTGMA  252 (327)
Q Consensus       181 ~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~G-T---~I~~~~~~~--~~~~~~~--~~~v~~i~~~~~la~IsIvG~~~~  252 (327)
                      ..++-.+-+..+.++||++......... .| +   .+.......  ...+...  .-.++.+.+.+++++|+++|.+|+
T Consensus        36 ~~G~~~~if~~La~~~Invd~i~~s~~~-~g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i~~~~~~a~vsvvG~~m~  114 (167)
T 2re1_A           36 KPGVAYQILGAVADANIEVDMIIQNVGS-EGTTDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVSAVGLGMR  114 (167)
T ss_dssp             CTTHHHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEEEEESSEEEEEEECSSCT
T ss_pred             CcCHHHHHHHHHHHcCCeEEEEEcCCCC-CCeeEEEEEEechHHHHHHHHHHHHHHHcCCceEEecCCEEEEEEECCCcC
Confidence            3444456778888999987665544221 13 2   222321100  0001101  113467889999999999999999


Q ss_pred             CcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388          253 GVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (327)
Q Consensus       253 ~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~  306 (327)
                      +.||+++++|++|+++||||.|++  +|+.+++|+|+++|.++++++||++|+.
T Consensus       115 ~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv~~~d~~~av~~Lh~~f~l  166 (167)
T 2re1_A          115 SHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLIDEKYMELATRVLHKAFNL  166 (167)
T ss_dssp             TCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHTTC
T ss_pred             CCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEEeHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999998  6899999999999999999999999964

>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}

Probab=99.29  E-value=1.3e-11  Score=116.50  Aligned_cols=118  Identities=15%  Similarity=0.155  Sum_probs=87.9

Q ss_pred             HHHHHHhhcCCCceEEecCc--eecCC-----CCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCC
Q 020388           90 KRLEKWFSQSPSNTIIATGF--IASTP-----DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gf--i~~~~-----~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a  162 (327)
                      ..|..+++  .+.|||..|.  ++...     .|...   .+++|++|+.+|.+|+||.|+|+|||||||+.+|+  |++
T Consensus       194 ~~I~~L~~--~g~Ivi~~ggggipv~~~~~~~~G~~~---vid~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~  266 (332)
T 4axs_A          194 DAIKQNVN--NGCVCIVGGGGGIPTIIQDNQYIGVDG---VIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQ  266 (332)
T ss_dssp             HHHHHHHH--TTCEEECCGGGCEEEEESSSCEEECSS---CCCHHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTC
T ss_pred             HHHHHhhc--CCeEEEecccCCCCccccCCcccCcee---eechHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cch
Confidence            67788887  7888887653  11111     12222   25689999999999999999999999999998876  788


Q ss_pred             eEEeecCHHHHHHHHhc---CCCcccHh--hHHHHHhCCC--CEEEeecC------CCCCCceEEe
Q 020388          163 VILRTLSYQEAWEMSYF---GANVLHPR--TIIPVMRYDI--PIVIRNIF------NLSVPGIMIC  215 (327)
Q Consensus       163 ~~i~~is~~ea~~l~~~---g~~v~~p~--a~~~a~~~~I--~v~I~n~~------~~e~~GT~I~  215 (327)
                      ++|++++.+|+.++...   +.++|.||  |+..+.+.+.  .++|.+..      +. ..||+|.
T Consensus       267 ~~i~~it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~~~~~~~~l~g-~~GT~Iv  331 (332)
T 4axs_A          267 KALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKG-LSGTKII  331 (332)
T ss_dssp             EECSSCBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEECSTTHHHHTTT-SSSEEEB
T ss_pred             hhcccCCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHCC-CCCcEEe
Confidence            99999999999999864   45789996  6666666654  56665432      22 2599885

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=99.22  E-value=1.7e-11  Score=124.68  Aligned_cols=74  Identities=30%  Similarity=0.416  Sum_probs=70.3

Q ss_pred             eeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhh
Q 020388          233 KGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREAL  308 (327)
Q Consensus       233 ~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~  308 (327)
                      ..+.+++++|+|++||.||+++||+++++|++|+++||||.||+  +|+.+|||+|+++|.++|+++||+.|+.+.
T Consensus       519 ~~v~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis--tSEi~Is~vV~~~~~~~Av~alh~~F~l~~  592 (600)
T 3l76_A          519 AAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TSEIKISCVVPQDRGVDALKAAHSAFNLAG  592 (600)
T ss_dssp             CEEEEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHTTTTS
T ss_pred             ceEEEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE--cCCceEEEEEeHHHHHHHHHHHHHHhCCCC
Confidence            46889999999999999999999999999999999999999999  789999999999999999999999997653

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=99.18  E-value=3.4e-11  Score=117.59  Aligned_cols=123  Identities=22%  Similarity=0.249  Sum_probs=90.3

Q ss_pred             cccHhhHHHHHhCCCCEEEeecCCCC-CCc-eEEe---CCCCCC--cchhhhhcC--CeeeEEeecCeeEEEeecCCCCC
Q 020388          183 VLHPRTIIPVMRYDIPIVIRNIFNLS-VPG-IMIC---RPPVDE--NEDEQIIDS--PVKGFATIDNLALVNVEGTGMAG  253 (327)
Q Consensus       183 v~~p~a~~~a~~~~I~v~I~n~~~~e-~~G-T~I~---~~~~~~--~~~~~~~~~--~v~~i~~~~~la~IsIvG~~~~~  253 (327)
                      ++-.+-+..+.++||++........+ ..| +.|+   +.....  ....+....  .+..+.+.+++|+|++||.+|++
T Consensus       277 g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~~~~~~a~vsvVG~gm~~  356 (421)
T 3ab4_A          277 GEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKS  356 (421)
T ss_dssp             THHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEEEECCEEEEEEECGGGTS
T ss_pred             cHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceEEEeCCeEEEEEEccCccc
Confidence            33346678888999997766432211 013 2332   221110  001111111  24578889999999999999999


Q ss_pred             cccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388          254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (327)
Q Consensus       254 ~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (327)
                      +||+++++|++|+++||||.||+  +|+.+|||+|+++|.++|+++||+.|+..
T Consensus       357 ~~Gv~a~~f~aL~~~~InI~~is--~Se~~is~vV~~~d~~~Av~~Lh~~f~~~  408 (421)
T 3ab4_A          357 HPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHEQFQLG  408 (421)
T ss_dssp             CTTHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEEGGGHHHHHHHHHHHTTCC
T ss_pred             CccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEEeHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999998  67999999999999999999999999863

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=99.12  E-value=1.2e-10  Score=102.41  Aligned_cols=94  Identities=27%  Similarity=0.369  Sum_probs=79.7

Q ss_pred             hcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc-----cEEEEEeccccHHHHHHHHHH
Q 020388          228 IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE-----HSVCFAVPEKEVKAVAEALES  302 (327)
Q Consensus       228 ~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~-----~sIs~~V~~~d~~~av~~Lh~  302 (327)
                      +++.+++|+..+|+|+|+|.|  |.+.||+++++|+.|+++||+|+||+|+.|+     ..++|++++++.+++...|.+
T Consensus        22 E~~vVtGIa~~~~~a~Iti~g--~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~   99 (200)
T 4go7_X           22 EDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDS   99 (200)
T ss_dssp             CSCEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHT
T ss_pred             ccCcEEEEEccCCEEEEEEec--CCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHH
Confidence            346799999999999999987  8999999999999999999999999998763     568999999999999999876


Q ss_pred             HHHhhhcCCCCce----eEEEEeecc
Q 020388          303 KFREALNAGRLSQ----FSASILSQD  324 (327)
Q Consensus       303 ~f~~~~~~~~~~~----~~~~~~~~~  324 (327)
                       +..++....+..    .+++|+|..
T Consensus       100 -~~~~~~~~~v~~~~~iakVSvVG~G  124 (200)
T 4go7_X          100 -LRNEIGFSQLLYDDHIGKVSLIGAG  124 (200)
T ss_dssp             -THHHHCCSEEEEECCEEEEEEEEES
T ss_pred             -HHhhhceeeEEEecCeeeeeeeccc
Confidence             555665555543    678888864

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=99.06  E-value=4.8e-10  Score=95.77  Aligned_cols=91  Identities=25%  Similarity=0.322  Sum_probs=76.8

Q ss_pred             CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC-----ccEEEEEeccccHHHHHHHHHHHH
Q 020388          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS-----EHSVCFAVPEKEVKAVAEALESKF  304 (327)
Q Consensus       230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s-----~~sIs~~V~~~d~~~av~~Lh~~f  304 (327)
                      +.+++|+..+|+++|+++|  +.+.||+++++|+.|+++||+|+||+|+.+     +.+++|+|+++|.+++.+.|++ +
T Consensus         5 ~~v~gIa~~~~~a~Itv~g--~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~-~   81 (167)
T 2dt9_A            5 KAVTGVALDLDHAQIGLIG--IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEP-V   81 (167)
T ss_dssp             CCEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHH-H
T ss_pred             CceeEEEEeCCEEEEEEec--CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHH-H
Confidence            4699999999999999998  678899999999999999999999999876     7899999999999999999987 5


Q ss_pred             HhhhcCCCCce----eEEEEeecc
Q 020388          305 REALNAGRLSQ----FSASILSQD  324 (327)
Q Consensus       305 ~~~~~~~~~~~----~~~~~~~~~  324 (327)
                      ..++.. .++-    -+++|+|.+
T Consensus        82 ~~~~~~-~v~~~~~~a~vsvVG~g  104 (167)
T 2dt9_A           82 LAEIGG-EAILRPDIAKVSIVGVG  104 (167)
T ss_dssp             HHHHCC-EEEEECSEEEEEEEESS
T ss_pred             HHHhCC-cEEEeCCEEEEEEECCC
Confidence            555552 2222    347788864

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=99.04  E-value=6.5e-10  Score=96.40  Aligned_cols=93  Identities=27%  Similarity=0.383  Sum_probs=78.6

Q ss_pred             cCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc-----cEEEEEeccccHHHHHHHHHHH
Q 020388          229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE-----HSVCFAVPEKEVKAVAEALESK  303 (327)
Q Consensus       229 ~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~-----~sIs~~V~~~d~~~av~~Lh~~  303 (327)
                      ...+++|+.++|+++|+|.|  |.+.||+.+++|+.|+++||+|+||+|+.++     .+++|+|++++.+++.+.|++ 
T Consensus         4 ~~~V~gIa~~~~~~~Iti~~--~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~-   80 (181)
T 3s1t_A            4 DPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDS-   80 (181)
T ss_dssp             CCEEEEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHH-
T ss_pred             CCcEEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHH-
Confidence            35689999999999999996  8899999999999999999999999997665     589999999999999988987 


Q ss_pred             HHhhhcCCCCce----eEEEEeecc
Q 020388          304 FREALNAGRLSQ----FSASILSQD  324 (327)
Q Consensus       304 f~~~~~~~~~~~----~~~~~~~~~  324 (327)
                      +..++....++-    -+++|+|..
T Consensus        81 ~~~el~~~~v~~~~~va~VsvVG~g  105 (181)
T 3s1t_A           81 LRNEIGFSQLLYDDHIGKVSLIGAG  105 (181)
T ss_dssp             THHHHCCSEEEEESCEEEEEEEEEC
T ss_pred             HHHhcCcceEEEeCCEEEEEEEecc
Confidence            555664444432    577888864

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=98.99  E-value=9e-10  Score=94.09  Aligned_cols=93  Identities=30%  Similarity=0.415  Sum_probs=75.6

Q ss_pred             cCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC---ccEEEEEeccccHHHHHHHHHHHHH
Q 020388          229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEKEVKAVAEALESKFR  305 (327)
Q Consensus       229 ~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~~sIs~~V~~~d~~~av~~Lh~~f~  305 (327)
                      .+.+++|+..+|+++|+|.|  |.+.||+++++|+.|+++||+|+||+|+.+   +.+++|+|++++.+++.+.|++ +.
T Consensus        13 ~~~V~gIa~~~~~~~i~v~~--~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~~~a~~~l~~-~~   89 (167)
T 2re1_A           13 RAAVTGIAFDKNQARINVRG--VPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQTLEILSE-RQ   89 (167)
T ss_dssp             --CCCEEEEECCCEEEEEEE--EECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGHHHHHHHHHH-SS
T ss_pred             CCCeEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHHHHHHHHHHH-HH
Confidence            34699999999999999998  888999999999999999999999998766   7899999999999999988887 44


Q ss_pred             hhhcCCCCc----eeEEEEeecc
Q 020388          306 EALNAGRLS----QFSASILSQD  324 (327)
Q Consensus       306 ~~~~~~~~~----~~~~~~~~~~  324 (327)
                      .++....+.    -..++|+|.+
T Consensus        90 ~~l~~~~i~~~~~~a~vsvvG~~  112 (167)
T 2re1_A           90 DSIGAASIDGDDTVCKVSAVGLG  112 (167)
T ss_dssp             TTTTCSEEEEESSEEEEEEECSS
T ss_pred             HHcCCceEEecCCEEEEEEECCC
Confidence            444433222    2457888875

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=98.92  E-value=1.4e-09  Score=91.95  Aligned_cols=73  Identities=16%  Similarity=0.201  Sum_probs=64.0

Q ss_pred             hcCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEecccc-HHHHHHHHHH
Q 020388          228 IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKE-VKAVAEALES  302 (327)
Q Consensus       228 ~~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d-~~~av~~Lh~  302 (327)
                      +...+++|+.++|+++|++.|.+|.+.||+.+++|+.|+++||+|+||+|  ++.+|+|+|++++ ..++++.|++
T Consensus         5 ~~~~v~gIa~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~--s~~~Isf~v~~~~~~~~il~~l~~   78 (157)
T 3mah_A            5 EKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT--SEVGVSLTIDNDKNLPDIVRALSD   78 (157)
T ss_dssp             --CCCCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEEC--CSSEEEEEESCCTTHHHHHHHHTT
T ss_pred             CCCceEEEEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEe--cCCEEEEEECChHHHHHHHHHHhc
Confidence            35679999999999999999999999999999999999999999999995  5789999999987 6666665554

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=98.73  E-value=2.2e-08  Score=86.32  Aligned_cols=91  Identities=25%  Similarity=0.326  Sum_probs=73.9

Q ss_pred             CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC-----ccEEEEEeccccHHHHHHHHHHHH
Q 020388          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS-----EHSVCFAVPEKEVKAVAEALESKF  304 (327)
Q Consensus       230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s-----~~sIs~~V~~~d~~~av~~Lh~~f  304 (327)
                      ..+++|+.++|+++|+|.+  +.+.||+++++|+.|+++||+|+||+|+.+     +.+|+|+++.++.+++.+.|.+ +
T Consensus         4 ~~V~gIa~~~~~~~Itv~~--~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~-~   80 (178)
T 2dtj_A            4 AVLTGVATDKSEAKVTVLG--ISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKK-L   80 (178)
T ss_dssp             CEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHT-T
T ss_pred             CcEEEEEecCCEEEEEEec--CCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHH-H
Confidence            4589999999999999986  578899999999999999999999998755     7889999999999999988876 4


Q ss_pred             HhhhcCCCCce----eEEEEeec
Q 020388          305 REALNAGRLSQ----FSASILSQ  323 (327)
Q Consensus       305 ~~~~~~~~~~~----~~~~~~~~  323 (327)
                      ..++....++.    .+++|+|.
T Consensus        81 ~~~~~~~~v~~~~~~a~VsvVG~  103 (178)
T 2dtj_A           81 QVQGNWTNVLYDDQVGKVSLVGA  103 (178)
T ss_dssp             TTTTTCSEEEEESCEEEEEEEEE
T ss_pred             HHhcCCCeEEEeCCeEEEEEEcC
Confidence            44443322222    44577775

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=98.33  E-value=1.3e-06  Score=86.89  Aligned_cols=62  Identities=19%  Similarity=0.374  Sum_probs=58.0

Q ss_pred             CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccH
Q 020388          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV  293 (327)
Q Consensus       230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~  293 (327)
                      ..+++|+..+|+++|+|.|.+|.+.+|+.+++|+.|+++||+|+||++  |+.+|||+|++++.
T Consensus       330 ~~v~gIa~~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~s--se~sis~~v~~~~~  391 (510)
T 2cdq_A          330 SILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPSKL  391 (510)
T ss_dssp             CCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE--ETTEEEEEECCGGG
T ss_pred             cccccccccCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEe--CCCeEEEEEechHh
Confidence            468999999999999999999999999999999999999999999985  59999999998874

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*

Probab=98.14  E-value=9e-07  Score=86.89  Aligned_cols=63  Identities=21%  Similarity=0.265  Sum_probs=58.1

Q ss_pred             cCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccH
Q 020388          229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV  293 (327)
Q Consensus       229 ~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~  293 (327)
                      ...+++|+..+|+++|++.|.+|.+.+|+.+++|+.|+++||+|+||++  |+.+|||+|++++.
T Consensus       296 ~~~v~gIa~~~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~s--s~~sis~~v~~~~~  358 (449)
T 2j0w_A          296 PPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITT--SEVSVALTLDTTGS  358 (449)
T ss_dssp             CCSEEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEE--ETTEEEEEECCCCC
T ss_pred             ccccccceeeCCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEe--CCCeEEEEEecccc
Confidence            3468999999999999999999999999999999999999999999995  58999999998753

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.07  E-value=7e-06  Score=67.71  Aligned_cols=60  Identities=22%  Similarity=0.369  Sum_probs=52.6

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCE-EEEEecCCccEEEEEeccccHHHHHHHHHHH
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANV-IMISQASSEHSVCFAVPEKEVKAVAEALESK  303 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V-~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~  303 (327)
                      ..+++|.+|.+.||+++++|+.|+++|||| .+++.. ++...+++++.+|.++|+++||+.
T Consensus        71 ~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~~d~~~A~~~L~~~  131 (144)
T 2f06_A           71 ITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRPSNMDKCIEVLKEK  131 (144)
T ss_dssp             EEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHT
T ss_pred             eeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEeCCHHHHHHHHHHc
Confidence            347888889999999999999999999999 556642 678899999999999999999986

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=97.38  E-value=0.00011  Score=71.92  Aligned_cols=92  Identities=11%  Similarity=0.224  Sum_probs=75.2

Q ss_pred             CeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhcC
Q 020388          231 PVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNA  310 (327)
Q Consensus       231 ~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~~  310 (327)
                      .+++|+..+|+++|++.|.+|.+.||+.+++|+.|+++||+|+||++  ++.++||+|++++..+.+..+.++|..++..
T Consensus       288 ~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~--~~~~is~~V~~~d~~~~~~~~~~el~~~~~~  365 (446)
T 3tvi_A          288 TITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPS--GVDSVSLVIEDCKLDGKCDKIIEEIKKQCNP  365 (446)
T ss_dssp             CCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCE--ETTEEEEEEEHHHHTTTHHHHHHHHHHHSCC
T ss_pred             ceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEec--CCCEEEEEEecchHHHHHHHHHHHHHHhcCC
Confidence            68999999999999999999999999999999999999999999985  4789999999998765444444555555544


Q ss_pred             CCCce----eEEEEeecc
Q 020388          311 GRLSQ----FSASILSQD  324 (327)
Q Consensus       311 ~~~~~----~~~~~~~~~  324 (327)
                      +.++-    -.++|+|..
T Consensus       366 ~~v~v~~~vA~VSvVG~g  383 (446)
T 3tvi_A          366 DSIEIHPNMALVATVGTG  383 (446)
T ss_dssp             SEEEEEEEEEEEEEECGG
T ss_pred             CcEEEeCCeEEEEEECCC
Confidence            44442    577888764

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=96.56  E-value=0.013  Score=47.69  Aligned_cols=55  Identities=9%  Similarity=0.113  Sum_probs=42.4

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC-ccE-EEEEeccccHHHHHHHHHH
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS-EHS-VCFAVPEKEVKAVAEALES  302 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s-~~s-Is~~V~~~d~~~av~~Lh~  302 (327)
                      .|++.   +.+.||.++++|+.|+++||||++|+|+.+ +.. ++|+  ..|.+++.+.|++
T Consensus         8 ~i~v~---v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~--~~d~~~a~~~L~~   64 (144)
T 2f06_A            8 QLSIF---LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI--VSDPDKAYKALKD   64 (144)
T ss_dssp             EEEEE---ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE--ESCHHHHHHHHHH
T ss_pred             EEEEE---ecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE--eCCHHHHHHHHHH
Confidence            34553   567899999999999999999999998643 223 4565  4688888888875

>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8

Probab=95.09  E-value=0.1  Score=42.43  Aligned_cols=67  Identities=10%  Similarity=0.128  Sum_probs=56.4

Q ss_pred             EEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHH
Q 020388          235 FATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF  304 (327)
Q Consensus       235 i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f  304 (327)
                      +........|++.|..-.+..|+.+.+-+.|+++||.+..||.   -.+=-++|++++.++|+++|.+..
T Consensus        56 ~~~~~~wr~i~v~~~l~~~~vGilA~is~pLA~agIsif~iSt---y~tD~IlVp~~~~~~Ai~aL~~~~  122 (134)
T 1zhv_A           56 VRVDPGWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVST---FDGDHLLVRSNDLEKTADLLANAG  122 (134)
T ss_dssp             SEEEEEEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEEC---SSCEEEEEEGGGHHHHHHHHHHTT
T ss_pred             CccCCCeEEEEEecCCCccHHHHHHHHHHHHHhCCCCeEEEEe---ccccEEEEeHHHHHHHHHHHHHcC
Confidence            3667788899998875557889999999999999999999983   233458899999999999998854

>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9

Probab=94.35  E-value=0.11  Score=42.10  Aligned_cols=64  Identities=13%  Similarity=0.117  Sum_probs=51.9

Q ss_pred             EeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHH
Q 020388          236 ATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (327)
Q Consensus       236 ~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~  302 (327)
                      ....+...|++.|..-.+-.|+.+.+-+.|+++||.+..+|.-   .+=-++|++++.++|+++|.+
T Consensus        66 ~~~~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIsif~iSty---~tDhIlVp~~~~~~A~~~L~~  129 (133)
T 1zvp_A           66 ESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANVIAGY---YHDHIFVQKEKAQQALQALGE  129 (133)
T ss_dssp             CCCSCEEEEEEECCC--CCSCHHHHHHHHHHHTTCCCEEEECS---SCEEEEEEGGGHHHHHHHHTT
T ss_pred             ccCCCeEEEEEeccCCccHHHHHHHHHHHHHhCCCCcEEEEec---cccEEEEehhHHHHHHHHHHH
Confidence            4456788888888655578999999999999999999999832   344588999999999999864

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=93.33  E-value=0.38  Score=35.32  Aligned_cols=59  Identities=20%  Similarity=0.309  Sum_probs=43.3

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--c--cEEEEEecc-ccHHHHHHHHHH
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--E--HSVCFAVPE-KEVKAVAEALES  302 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~--~sIs~~V~~-~d~~~av~~Lh~  302 (327)
                      .+.|++.|.   +.||+++++.+.|+++|+||..+++...  .  ..+.+-++. .+.+++.+.|.+
T Consensus         5 ~~~l~v~~~---DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~   68 (91)
T 1zpv_A            5 KAIITVVGK---DKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEES---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHH
T ss_pred             eEEEEEEEC---CCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHH
Confidence            467888874   6899999999999999999999887542  2  233343454 566777777765

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=91.75  E-value=0.66  Score=39.28  Aligned_cols=47  Identities=23%  Similarity=0.347  Sum_probs=37.2

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEecc
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPE  290 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~~  290 (327)
                      ...|+|.|.   +.||+++++.+.|+++|+||.-++|...  ...+.+.+..
T Consensus         6 ~~~itv~~~---DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~   54 (192)
T 1u8s_A            6 HLVITAVGT---DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG   54 (192)
T ss_dssp             EEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEEcC---CCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec
Confidence            467899984   6899999999999999999999988643  3455555543

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=88.53  E-value=0.63  Score=39.75  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=32.8

Q ss_pred             CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC
Q 020388          240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS  279 (327)
Q Consensus       240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~  279 (327)
                      ...+|+|.|.   +.||+++++.+.|+++|+||.-+.|..
T Consensus        92 ~~~iltv~g~---DrpGiva~Vt~~La~~g~nI~~~~~~t  128 (195)
T 2nyi_A           92 REYELYVEGP---DSEGIVEAVTAVLAKKGANIVELETET  128 (195)
T ss_dssp             EEEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             cEEEEEEEeC---CCcCHHHHHHHHHHHcCCCEEEceeee
Confidence            4578999984   689999999999999999999999864

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=87.92  E-value=0.83  Score=38.28  Aligned_cols=51  Identities=18%  Similarity=0.261  Sum_probs=36.5

Q ss_pred             CCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEeccc--cHHHHHHHHHH
Q 020388          252 AGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEK--EVKAVAEALES  302 (327)
Q Consensus       252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~~~--d~~~av~~Lh~  302 (327)
                      .+.||+++++.+.|++.|+||..++.+.++    ..+.+.+...  ..+++.+.|++
T Consensus        12 eNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~K   68 (165)
T 2pc6_A           12 ENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNK   68 (165)
T ss_dssp             ECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred             eCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcC
Confidence            478999999999999999999988765443    4577777633  33344444443

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=87.80  E-value=0.93  Score=37.92  Aligned_cols=57  Identities=12%  Similarity=0.244  Sum_probs=39.5

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEeccc--cHHHHHHHHHH
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEK--EVKAVAEALES  302 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~~~--d~~~av~~Lh~  302 (327)
                      .|++..   .+.||+++++.+.|++.|+||..++.+.++    ..+.|.+...  ..+++.+.|++
T Consensus         5 ~IsV~v---~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~K   67 (164)
T 2f1f_A            5 ILSVLL---ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHK   67 (164)
T ss_dssp             EEEEEE---ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEEE---eCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcC
Confidence            345553   478999999999999999999988765443    4577778733  33444444444

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=86.32  E-value=2.8  Score=30.02  Aligned_cols=49  Identities=18%  Similarity=0.282  Sum_probs=34.6

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc--cEEEEEeccccH
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE--HSVCFAVPEKEV  293 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~--~sIs~~V~~~d~  293 (327)
                      ..|.+.+   .+.||+++++.+.|++.|+||..+.+....  ..+.+.+.-.+.
T Consensus         6 ~~l~v~~---~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~   56 (88)
T 2ko1_A            6 AGIRIVG---EDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNT   56 (88)
T ss_dssp             EEEEEEE---ECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSH
T ss_pred             EEEEEEE---ECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCH
Confidence            3455664   478999999999999999999988875432  334444444333

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=83.80  E-value=1.8  Score=37.11  Aligned_cols=57  Identities=21%  Similarity=0.285  Sum_probs=39.9

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEeccccHHHHHHHHHHHH
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEKEVKAVAEALESKF  304 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~~~d~~~av~~Lh~~f  304 (327)
                      .|++.   +.+.||+++|+...|++.|+||..++.+.++    ..+.++|...  +++++.|.+.+
T Consensus        31 ~LsVl---VeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--e~~ieqL~kQL   91 (193)
T 2fgc_A           31 LVSML---VHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--DKTIEQIEKQA   91 (193)
T ss_dssp             EEEEE---EECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--TTHHHHHHHHH
T ss_pred             EEEEE---ECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--HHHHHHHHHHh
Confidence            45554   4578999999999999999999988865432    4577777643  34444454443

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=80.67  E-value=2.6  Score=38.70  Aligned_cols=35  Identities=9%  Similarity=-0.015  Sum_probs=31.8

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS  279 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~  279 (327)
                      ++++++|.   +.||+.+++.+.|+++|+||.-++|..
T Consensus        23 ~iLtv~c~---DrpGIVa~VS~~La~~g~NI~d~~q~~   57 (302)
T 3o1l_A           23 FRLVIACP---DRVGIVAKVSNFLASHNGWITEASHHS   57 (302)
T ss_dssp             EEEEEEEE---CCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             EEEEEECC---CCCCHHHHHHHHHHHCCCCEEEeeEEe
Confidence            67999984   789999999999999999999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	327
d2j0wa1	292	c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli	5e-41
d2cdqa1	304	c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Ar	9e-38
d2hmfa1	302	c.73.1.3 (A:2-303) Aspartokinase {Methanococcus ja	2e-35
d2hmfa3	100	d.58.18.10 (A:304-403) Aspartokinase {Methanococcu	2e-19
d2hmfa2	67	d.58.18.10 (A:404-470) Aspartokinase {Methanococcu	1e-15
d2cdqa2	91	d.58.18.10 (A:329-419) Aspartokinase {Thale cress	2e-15
d2j0wa2	91	d.58.18.10 (A:295-385) Aspartokinase {Escherichia	4e-15
d2j0wa3	64	d.58.18.10 (A:386-449) Aspartokinase {Escherichia	2e-13
d2cdqa3	75	d.58.18.10 (A:420-494) Aspartokinase {Thale cress	1e-11
d2a1fa1	236	c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophi	1e-10
d2ij9a1	219	c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeog	1e-09
d1ybda1	236	c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseri	4e-08
d2brxa1	225	c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc	2e-05
d1z9da1	238	c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptoc	3e-05

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score =  142 bits (359), Expect = 5e-41
 Identities = 66/194 (34%), Positives = 104/194 (53%), Gaps = 6/194 (3%)

Query: 32  TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKR 91
           + + TD +V HGEL S  +   ++R+  +  +W D R+V+  N           + +E  
Sbjct: 105 SPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELA 164

Query: 92  LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV 151
             +   +     +I  GFI S      TTL R GSD++AA++   L A +V IWTDV G+
Sbjct: 165 ALQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGI 224

Query: 152 YSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
           Y+ DPR VS A  +  +++ EA EM+ FGA VLHP T++P +R DIP+ + +  +    G
Sbjct: 225 YTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGG 284

Query: 212 IMICRPPVDENEDE 225
            ++C      N+ E
Sbjct: 285 TLVC------NKTE 292

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 304

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  134 bits (338), Expect = 9e-38
 Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 3/183 (1%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV---NPTSSNQVDPDFSESEKRLE 93
           D++V  GE  S ++ AA +   G+  +  D  E+  +   + T+ + ++  +    KRL 
Sbjct: 117 DYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLY 176

Query: 94  KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYS 153
             +   P+  I+             TTL R GSD +A  +G  L   ++ +W DVDGV +
Sbjct: 177 DDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLT 236

Query: 154 ADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIM 213
            DP     A  +  L++ EA E++YFGA VLHP+++ P    +IP+ ++N +N   PG +
Sbjct: 237 CDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTI 296

Query: 214 ICR 216
           I +
Sbjct: 297 ITK 299

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score =  128 bits (321), Expect = 2e-35
 Identities = 75/214 (35%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 3   QVRNYVSELSYEFIRSTYNFLSNVDS-GHATESFTDFVVGHGELWSAQMLAAVVRKNGID 61
           +++  V ++    I      L  V   G  T    D+++  GE  S+ +L+  +R  G  
Sbjct: 87  EIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEK 146

Query: 62  CKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTL 121
              ++  E  I+   +         E ++RL     +      + TGFI +T +   TTL
Sbjct: 147 SIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEG--IIPVVTGFIGTTEEGYITTL 204

Query: 122 KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA 181
            R GSD+SAA++G  L A  + IWTDV GVY+ DPR V  A  +  LSY EA E++YFGA
Sbjct: 205 GRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGA 264

Query: 182 NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215
            VLHPRTI P M   IPI+++N F     G +I 
Sbjct: 265 KVLHPRTIEPAMEKGIPILVKNTFEPESEGTLIT 298

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 100

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score = 79.9 bits (197), Expect = 2e-19
 Identities = 40/97 (41%), Positives = 57/97 (58%)

Query: 229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAV 288
           DS VK  +TI N+AL+N+ G GM GV GTA  IF A+ +   NVI+ISQ SSE ++   V
Sbjct: 3   DSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVV 62

Query: 289 PEKEVKAVAEALESKFREALNAGRLSQFSASILSQDK 325
            E++V    +AL+ +F +      L+      +S DK
Sbjct: 63  SEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDK 99

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 67

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score = 68.2 bits (167), Expect = 1e-15
 Identities = 27/65 (41%), Positives = 38/65 (58%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
            +++V G GM G  G A  IF AV + GAN+ MI+Q SSE ++ F + EK++      L 
Sbjct: 2   CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLH 61

Query: 302 SKFRE 306
            KF E
Sbjct: 62  EKFIE 66

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 68.2 bits (167), Expect = 2e-15
 Identities = 11/76 (14%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEK 291
           +       N+ ++++  T M G  G    +F   +++G +V +++   SE S+   +   
Sbjct: 4   LTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPS 61

Query: 292 EVKAVAEALESKFREA 307
           ++ +     +      
Sbjct: 62  KLWSRELIQQELDHVV 77

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score = 67.9 bits (166), Expect = 4e-15
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 231 PVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPE 290
             +  A   N  L+ +    M    G    +FG +     +V +I+  +SE SV   +  
Sbjct: 4   LFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLIT--TSEVSVALTLDT 61

Query: 291 KEVKAVAEALESKFREA 307
               +  + L ++    
Sbjct: 62  TGSTSTGDTLLTQSLLM 78

>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score = 62.1 bits (151), Expect = 2e-13
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL 300
           LALV + G  ++   G    +FG ++    N+ MI   +S H++CF VP ++ + V + L
Sbjct: 1   LALVALIGNDLSKACGVGKEVFGVLEPF--NIRMICYGASSHNLCFLVPGEDAEQVVQKL 58

Query: 301 ESKFRE 306
            S   E
Sbjct: 59  HSNLFE 64

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 57.5 bits (139), Expect = 1e-11
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
           A++++ G  +          F  +   G NV MISQ +S+ ++ F V E E +   +AL 
Sbjct: 2   AIISLIG-NVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALH 60

Query: 302 SKFREALNAGRLS 314
             F E+ +   L 
Sbjct: 61  KSFFESGDLSELL 73

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

 Score = 58.8 bits (141), Expect = 1e-10
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 12/111 (10%)

Query: 114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEA 173
             +  T      +D +A + G  + A  V   T VDGVY  DP K  +A + + LSY E 
Sbjct: 129 IFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEV 188

Query: 174 WEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSV---------PGIMIC 215
            +       V+          + +PI + N+               G  IC
Sbjct: 189 IDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC 236

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 54.9 bits (131), Expect = 1e-09
 Identities = 35/175 (20%), Positives = 56/175 (32%), Gaps = 23/175 (13%)

Query: 39  VVGHGELWSAQMLAAVVRKNGID----CKWMDTREVLIVNPTSSNQVDPDFSESEKRLEK 94
           VVG G+L  A+      R+ G               L      S             +E 
Sbjct: 38  VVGGGKL--AREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSAAKKVPVDFMEA 95

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
                    ++  G                 +D +AA++   ++A      T+VDGVYSA
Sbjct: 96  EELSKLYRVVVMGGTFP-----------GHTTDATAALLAEFIKADVFINATNVDGVYSA 144

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPV------MRYDIPIVIRN 203
           DP+  + AV    LS Q+  E+    +       +I +       R  I   +  
Sbjct: 145 DPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVIL 199

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

 Score = 50.8 bits (120), Expect = 4e-08
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE 172
                 T      +D +AA+ GA +    +   T+VDGVY+ADP+K   A    T+++ E
Sbjct: 127 VIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDE 186

Query: 173 AWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSV 209
           A         V+            + IV+  I     
Sbjct: 187 ALLK---NLKVMDATAFALCRERKLNIVVFGIAKEGS 220

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D  AA++   L+A  + + T+VDGVY+ADP+K   A  ++ +  +E  E+   G      
Sbjct: 121 DAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGS 180

Query: 187 RTII------PVMRYDIPIVIRNIFN 206
            ++I       + R  I  ++    +
Sbjct: 181 SSVIDPLAAKIIARSGIKTIVIGKED 206

>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} Length = 238

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 4/182 (2%)

Query: 26  VDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDF 85
             SG                 +A      V+ +           +++ +      VD   
Sbjct: 40  HVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRV 99

Query: 86  SESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIW 145
             +               +                     +D +AA+  A + A  + + 
Sbjct: 100 QTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMA 159

Query: 146 T-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNI 204
              VDGVY+ADP+K + AV    L++ E  +    G  ++        M  DI +V+ N+
Sbjct: 160 KNGVDGVYNADPKKDANAVKFDELTHGEVIKR---GLKIMDATASTLSMDNDIDLVVFNM 216

Query: 205 FN 206
             
Sbjct: 217 NE 218

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	327
d2cdqa1	304	Aspartokinase {Thale cress (Arabidopsis thaliana)	100.0
d2j0wa1	292	Aspartokinase {Escherichia coli [TaxId: 562]}	100.0
d2hmfa1	302	Aspartokinase {Methanococcus jannaschii [TaxId: 21	100.0
d2brxa1	225	Uridylate kinase PyrH {Pyrococcus furiosus [TaxId:	99.87
d2akoa1	250	Glutamate 5-kinase {Campylobacter jejuni [TaxId: 1	99.85
d2a1fa1	236	Uridylate kinase PyrH {Haemophilus influenzae [Tax	99.85
d2ij9a1	219	Uridylate kinase PyrH {Archaeoglobus fulgidus [Tax	99.83
d1ybda1	236	Uridylate kinase PyrH {Neisseria meningitidis [Tax	99.81
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	99.75
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	99.74
d1z9da1	238	Uridylate kinase PyrH {Streptococcus pyogenes [Tax	99.66
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	99.64
d2btya1	282	N-acetyl-l-glutamate kinase {Thermotoga maritima [	99.59
d2bufa1	300	N-acetyl-l-glutamate kinase {Pseudomonas aeruginos	99.59
d2j0wa3	64	Aspartokinase {Escherichia coli [TaxId: 562]}	99.59
d2ap9a1	291	N-acetyl-l-glutamate kinase {Mycobacterium tubercu	99.58
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	99.45
d2j0wa2	91	Aspartokinase {Escherichia coli [TaxId: 562]}	99.37
d1e19a_	313	Carbamate kinase {Archaeon Pyrococcus furiosus [Ta	99.35
d1b7ba_	307	Carbamate kinase {Enterococcus faecium [TaxId: 135	99.31
d1gs5a_	258	N-acetyl-l-glutamate kinase {Escherichia coli [Tax	98.61
d1zhva2	66	Hypothetical protein Atu0741 {Agrobacterium tumefa	96.27
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	96.21
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	95.65
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	95.57
d1zvpa2	64	Hypothetical protein VC0802 {Vibrio cholerae [TaxI	95.15
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	95.14
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	92.01
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	91.98
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	91.76
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	91.45
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	90.76
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	88.06
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	87.44

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.8e-50  Score=377.99  Aligned_cols=202  Identities=29%  Similarity=0.487  Sum_probs=183.5

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHH
Q 020388           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES   88 (327)
Q Consensus        14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~   88 (327)
                      +.+...++.|++++.     ++++++.+|+++|+||+||+++++.+|+++|+++.+++++++++++++.++++.++...+
T Consensus        89 ~~~~~~~~~l~~~l~~i~~~~~~s~~~~D~ils~GE~lSa~ll~~~L~~~gi~a~~~d~~~~~iit~~~~~~a~~~~~~~  168 (304)
T d2cdqa1          89 SVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATY  168 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHH
T ss_pred             hHHHHHHHHHHHHHhhhccccccchhhHHHHHHhHHHHHHHHHHHHHHHcCCceEEEeecccccccccccccccccccch
Confidence            355666777777775     689999999999999999999999999999999999999999778888888877766554


Q ss_pred             HHH----HHHHhhcCCCceEEecCceecC-CCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCe
Q 020388           89 EKR----LEKWFSQSPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAV  163 (327)
Q Consensus        89 ~~~----i~~~l~~~~~~vpVv~Gfi~~~-~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~  163 (327)
                      ...    +..+++  .+.|||++||+|.+ ++|.++|||||||||+|+++|.+|+|+++.+|||||||||+||+++|+|+
T Consensus       169 ~~~~~~~~~~~~~--~~~v~vv~Gfig~~~~~G~~ttLGRgGSD~TAa~la~~l~A~~~~iwtDV~Gi~taDPr~v~~a~  246 (304)
T d2cdqa1         169 PAVAKRLYDDWMH--DPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRAT  246 (304)
T ss_dssp             HHHHHHHHHHHHH--SCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCC
T ss_pred             hhhHHHHhhhhhc--cCcEEEeeccccccCcCCceeeeccCccccHHHHHHHHhCchHHHHhcCcchheeccccccCCce
Confidence            333    344455  67899999999997 78999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCC
Q 020388          164 ILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRP  217 (327)
Q Consensus       164 ~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~  217 (327)
                      +|++|||+||.||+++|++||||+|+.|+++++||++|+|+++|+.+||.|+.+
T Consensus       247 ~i~~lsy~EA~ela~~GakvlHp~ti~p~~~~~Ipi~i~nt~~p~~~GT~I~~~  300 (304)
T d2cdqa1         247 PVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKT  300 (304)
T ss_dssp             BCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEESC
T ss_pred             EcCccCHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEEeCC
Confidence            999999999999999999999999999999999999999999999999999865

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.2e-50  Score=374.56  Aligned_cols=204  Identities=33%  Similarity=0.590  Sum_probs=179.0

Q ss_pred             HHHHHHHHHHHhhh---cCCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHH
Q 020388           14 EFIRSTYNFLSNVD---SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK   90 (327)
Q Consensus        14 ~~i~~~~~~l~~~~---~~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~   90 (327)
                      +.++.+++.|..++   ..+.+++.+|+++|+||+||+++++.+|+++|+++.+++++++++++ +.+++..+++..+.+
T Consensus        84 ~~l~~~~~~l~~l~~~~~~~~s~~~~d~Ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~i~t~-~~~~~a~~~~~~~~~  162 (292)
T d2j0wa1          84 EEIERLLENITVLAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTN-DRFGRAEPDIAALAE  162 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBC-SCTTSCCBCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcccChHHHHHHHhhhHHHhHHHHHHHHHhcCCCccccchhheeecC-Cccccccchhhhhhh
Confidence            44555555555544   46788999999999999999999999999999999999999996654 566777888766554


Q ss_pred             HHHHH-hhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecC
Q 020388           91 RLEKW-FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (327)
Q Consensus        91 ~i~~~-l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is  169 (327)
                      ..... .......|||++||+|.+.+|.++|||||||||+|+++|++|+|+++++|||||||||+||+++|+|++|++||
T Consensus       163 ~~~~~~~~~~~~~i~Vv~GFig~~~~G~~ttLGRgGSDytAa~~a~~l~A~~v~iwtDV~Gi~taDP~~v~~A~~i~~ls  242 (292)
T d2j0wa1         163 LAALQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIA  242 (292)
T ss_dssp             HHHHHTHHHHHHSEEEEESSEEECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEE
T ss_pred             hhhhhhhhhhcccccccccccccccCCceEeeccCcccHHHHHHHHHhhcHHHHHhccCcceeechhhcCCCceEcceeC
Confidence            43332 22113468999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCCC
Q 020388          170 YQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPP  218 (327)
Q Consensus       170 ~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~~  218 (327)
                      |+||.||+++|++||||+|++||+++|||++|+|+++|+.+||.|+.++
T Consensus       243 y~EA~ela~~GakVlhp~ti~p~~~~~Ipi~i~nt~~p~~~GT~I~~~~  291 (292)
T d2j0wa1         243 FAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKT  291 (292)
T ss_dssp             HHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTTSCCEEEESCC
T ss_pred             HHHHHHHHhCCccccCHHHHHHHHHcCCcEEEeeCCCCCCCCCeEecCC
Confidence            9999999999999999999999999999999999999999999998754

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.9e-49  Score=370.69  Aligned_cols=202  Identities=37%  Similarity=0.553  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHHhhhc-----CCCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHH
Q 020388           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES   88 (327)
Q Consensus        14 ~~i~~~~~~l~~~~~-----~~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~   88 (327)
                      ++++..++.|++++.     ++++++.+|.++|+||+||+.+|+.+|+++|+++.+++++++++++++.++.+.+++..+
T Consensus        94 ~~i~~~l~~L~~~l~~~~~~~e~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~  173 (302)
T d2hmfa1          94 KIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV  173 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEECTTTTTEEECSCTTSCCEEEECH
T ss_pred             HHHHHHHHHHHHHHHHhhhcccCCHHHHHHHhhhhhhHHhHHHHHHHHHcCCceEEeeccccccccCCccchhhhhhhhh
Confidence            357778888888886     688999999999999999999999999999999999999999888888888888888778


Q ss_pred             HHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeec
Q 020388           89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (327)
Q Consensus        89 ~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~i  168 (327)
                      ++++..+++  .+.|||++||+|.+.+|.++|||||||||+|+.+|.+|+|+++++|||||||||+||+++|+|++++++
T Consensus       174 ~~~l~~~~~--~~~v~Vv~GFig~~~~G~~ttLgRgGSD~tA~~la~~l~A~~~~i~tdv~gi~~~dP~~~~~a~~~~~~  251 (302)
T d2hmfa1         174 KERLLPLLK--EGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKL  251 (302)
T ss_dssp             HHHHHHHHH--TTCEEEEESSEEECTTCCEEECCTTTHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEE
T ss_pred             HHHHHHHHh--cCCeEEeecccccCCCCCEEEEeccCcccHHHHHHHHhccHHHHHHhccchhccchhhcCCCceEeccc
Confidence            888998888  789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCCCCCceEEeCC
Q 020388          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRP  217 (327)
Q Consensus       169 s~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~e~~GT~I~~~  217 (327)
                      +|+||.||+++|+++|||+|+.||+++|||++|+|+++|+.+||.|+.+
T Consensus       252 ~y~ea~eLa~~g~~v~h~~~~~~~~~~~i~i~v~~~~~~~~~gT~i~~~  300 (302)
T d2hmfa1         252 SYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITND  300 (302)
T ss_dssp             EHHHHHHHHHTTCTTSCGGGHHHHHHTTCCEEEEETTSTTSCCEEEESC
T ss_pred             CHHHHHHHHhCCCcccCHHHHHHHHHcCCCEEEeeCCCCCCCCCEEcCC
Confidence            9999999999999999999999999999999999999999999999875

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.87  E-value=3.5e-22  Score=177.54  Aligned_cols=151  Identities=25%  Similarity=0.295  Sum_probs=120.3

Q ss_pred             CChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCce
Q 020388           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (327)
Q Consensus        31 ~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi  110 (327)
                      .++...+.+...++++++.++...|.+.|++...                  .++    ....++++  .+.|||+.+..
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------~~~----~~~~~~l~--~~~ipv~~~~~  115 (225)
T d2brxa1          60 SSETFKDFIGIQITRANAMLLIAALREKAYPVVV------------------EDF----WEAWKAVQ--LKKIPVMGGTH  115 (225)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSCB------------------CSH----HHHHHHHH--TTCBCEECCCS
T ss_pred             hhhHHHHHhhhhHHHHHHHHHHHHHHhhhccccc------------------ccH----HHHHHHHH--hcccccccCCC
Confidence            4567778888889999999999999999877421                  122    23334565  67899986632


Q ss_pred             ecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCC-----C-cc
Q 020388          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA-----N-VL  184 (327)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~-----~-v~  184 (327)
                      +           .+.+|++|+++|..|+|++|++|||||||||+||+++|+|++|++++++|+.+++..|.     + ++
T Consensus       116 ~-----------~~~~D~lAa~lA~~l~Ad~lii~TDVdGVyt~dP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~g~gg~~  184 (225)
T d2brxa1         116 P-----------GHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVI  184 (225)
T ss_dssp             T-----------TCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCS
T ss_pred             C-----------CcchhHHHHHHHHHhCchhhhhhhhhhhhhhcccccccccccceEEecchHHHHhccCccccCCCCcc
Confidence            1           12369999999999999999999999999999999999999999999999999987553     2 55


Q ss_pred             cHhhHHHHHhCCCCEEEeecCCC---------CCCceEEeC
Q 020388          185 HPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (327)
Q Consensus       185 ~p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~~  216 (327)
                      ++.|++.|.++|+|++|.|++.|         +..||+|.|
T Consensus       185 ~k~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~ge~~GT~i~P  225 (225)
T d2brxa1         185 DPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP  225 (225)
T ss_dssp             CHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred             cHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCCcEecC
Confidence            66688999999999999998754         567999864

>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Glutamate 5-kinase
species: Campylobacter jejuni [TaxId: 197]

Probab=99.85  E-value=1.8e-21  Score=175.38  Aligned_cols=162  Identities=12%  Similarity=0.125  Sum_probs=123.6

Q ss_pred             hhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (327)
Q Consensus        33 ~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~  112 (327)
                      ....+.+.+.||..++.++...|..+|+++...-....      .+. ....+....+.+..+++  .+.+||+.+    
T Consensus        61 ~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~l~~~~------~~~-~~~~~~~~~~~~~~~l~--~~~ipv~~~----  127 (250)
T d2akoa1          61 LINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGK------DFD-SRKATKHAKNAIDMMIN--LGILPIINE----  127 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEECTG------GGG-CHHHHHHHHHHHHHHHH--TTCEEEEEE----
T ss_pred             hhhhhhhhcccchhHHHHHHHHhhhccccccccccccc------chh-hhhhhhhhhHHHHHHHH--hCccccccc----
Confidence            35556788999999999999999999998754322111      110 00112223366777887  789999765    


Q ss_pred             CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCH--HHHHHHH-----hcCCCccc
Q 020388          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMS-----YFGANVLH  185 (327)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~--~ea~~l~-----~~g~~v~~  185 (327)
                      +..+.+..++++++|++|+++|..++|++|+++||||||||+||+++|+|++|+++++  ++..++.     ..|+++|.
T Consensus       128 ~~~~~~~~~~~~~~D~~A~~lA~~~~a~~li~~tdVdGVyd~dP~~~~~Ak~i~~It~~~~~~~~~~~~~~s~~~tGGM~  207 (250)
T d2akoa1         128 NDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIV  207 (250)
T ss_dssp             CTTTCCHHHHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHH
T ss_pred             CccccccccccccchhhHHHHHHhcccceeeeccCCCceeeCCCcccccccchhhccccchHHhhhhcccCCCCCCCchH
Confidence            3345566678899999999999999999999999999999999999999999999998  4444443     24578899


Q ss_pred             Hh--hHHHHHhCCCCEEEeecCCC
Q 020388          186 PR--TIIPVMRYDIPIVIRNIFNL  207 (327)
Q Consensus       186 p~--a~~~a~~~~I~v~I~n~~~~  207 (327)
                      +|  |+..|+++|++++|.|++.|
T Consensus       208 ~Kl~aa~~~~~~gi~v~I~nG~~~  231 (250)
T d2akoa1         208 TKLKAAKFLLEHNKKMFLASGFDL  231 (250)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             HHHHHHHHHHHCCCCEEEecCCCc
Confidence            85  88999999999999998754

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

Probab=99.85  E-value=1.9e-20  Score=166.60  Aligned_cols=180  Identities=17%  Similarity=0.134  Sum_probs=126.3

Q ss_pred             ccHHHHHHHHHHHHhhhcC----------------------CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEccc
Q 020388           11 LSYEFIRSTYNFLSNVDSG----------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (327)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~~----------------------~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~   68 (327)
                      +..++|+...+.+.++.+.                      ..+....+..........+.+++..+.............
T Consensus        25 i~~~~i~~la~~I~~l~~~g~~vivVssg~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (236)
T d2a1fa1          25 IDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAF  104 (236)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCHHHHHHHHHHHHHHHHCCCeEEEEecccccchhhhhhhcCCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhh
Confidence            5678888888888887751                      233444555566666666777777777776666554332


Q ss_pred             ceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeecc
Q 020388           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (327)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV  148 (327)
                      ....          ......+..+...++  .+.++++.+.         ..+.+|++|.+|+++|.+++|+.|+++|||
T Consensus       105 ~~~~----------~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~~dnD~laa~vA~~~~Ad~lii~TDV  163 (236)
T d2a1fa1         105 QLNG----------ICDTYNWSEAIKMLR--EKRVVIFSAG---------TGNPFFTTDSTACLRGIEIEADVVLKATKV  163 (236)
T ss_dssp             CCTT----------TSEECCHHHHHHHHH--TTCEEEEEST---------TSCSSCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             hhhh----------hHHHhhhhhhhhhhh--hccccccccc---------ccCCCCCCcHHHHHHHHHhchhHHHHhhcc
Confidence            2210          011112244555555  5667765432         123467899999999999999999999999


Q ss_pred             CccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCC---------CCCceEE
Q 020388          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMI  214 (327)
Q Consensus       149 ~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I  214 (327)
                      |||||+||+++|+|+++++++++|+.+   .|+++++++|++.|+++|||++|.|+++|         +..||+|
T Consensus       164 dGvyt~dP~~~~~A~~i~~i~~~e~l~---~G~~v~k~~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~Ge~~GTlI  235 (236)
T d2a1fa1         164 DGVYDCDPAKNPDAKLYKNLSYAEVID---KELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTI  235 (236)
T ss_dssp             SSCBCC-------CCBCSEECHHHHHH---TTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEE
T ss_pred             cccccccccccccccccccccHHHHHh---cCCceeHHHHHHHHHHCCCeEEEEeCCCCcHHHHHHcCCCCccee
Confidence            999999999999999999999998866   49999999999999999999999999876         3569987

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.83  E-value=4.2e-20  Score=163.19  Aligned_cols=113  Identities=24%  Similarity=0.229  Sum_probs=93.9

Q ss_pred             HHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecC
Q 020388           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is  169 (327)
                      ...+++++  .+.+||..|+++           ++.+|++|+++|..++||.|+++||||||||+||+.+|+|+++++++
T Consensus        93 ~~~~~l~~--~~~v~v~~~~~~-----------~~stD~laa~vA~~l~Ad~liilTDVDGvYt~dP~~~~~A~~i~~is  159 (219)
T d2ij9a1          93 MEAEELSK--LYRVVVMGGTFP-----------GHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLS  159 (219)
T ss_dssp             HHHHHHHT--TCSEEEECCCSS-----------SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEEC
T ss_pred             HHHHHHhc--cCCceEECCCCC-----------CCcccHHHHHHHHHcCchHhhhccCcccccccccccCcccccccccC
Confidence            44556666  678898876532           23469999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcC------CCcccHhhHHHHHhCCCCEEEeecC--------CCCCCceEEe
Q 020388          170 YQEAWEMSYFG------ANVLHPRTIIPVMRYDIPIVIRNIF--------NLSVPGIMIC  215 (327)
Q Consensus       170 ~~ea~~l~~~g------~~v~~p~a~~~a~~~~I~v~I~n~~--------~~e~~GT~I~  215 (327)
                      |+|+.++...+      ..++++.|++.|.++|+|++|.|+.        +++..||.|+
T Consensus       160 ~~e~~~~~~~~~~~~~gg~~~k~~Aa~~a~~~gi~~~I~~g~~~ni~~~l~Ge~vGT~Is  219 (219)
T d2ij9a1         160 PQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVIA  219 (219)
T ss_dssp             HHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEECCHHHHHHHHTTCCCSEEEC
T ss_pred             HHHHHHHhhccCccCCCCCcchHHHHHHHHHcCCcEEEecCCCcHHHHHHCCCCCceEeC
Confidence            99999887533      2378999999999999999999874        3345799884

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

Probab=99.81  E-value=5.8e-19  Score=156.33  Aligned_cols=181  Identities=19%  Similarity=0.203  Sum_probs=136.0

Q ss_pred             ccHHHHHHHHHHHHhhhcC----------------------CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEccc
Q 020388           11 LSYEFIRSTYNFLSNVDSG----------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (327)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~~----------------------~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~   68 (327)
                      +..++|+...+.+.++.+.                      ..+........+.+..+....+...+...+.........
T Consensus        24 i~~~~i~~la~~I~~l~~~g~~vviVssG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (236)
T d1ybda1          24 INHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSAL  103 (236)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCHHHHHHHHHHHHHHHHCCCEEEEEeccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence            5677888888888777651                      233445555666667777777788888888887766543


Q ss_pred             ceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeecc
Q 020388           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (327)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV  148 (327)
                      .....          ........+...++  .+.++++...         ..+.+|++|.+|+++|..++|+.++++|||
T Consensus       104 ~~~~~----------~~~~~~~~~~~~~~--~~~~~~~~~~---------~~~~~gdnD~laa~vA~~~~ad~liilTdV  162 (236)
T d1ybda1         104 SMQQI----------AETYARPKAIQYLE--EGKVVIFAAG---------TGNPFFTTDTAAALRGAEMNCDVMLKATNV  162 (236)
T ss_dssp             CBSSS----------CEECCHHHHHHHHH--TTCEEEEEST---------TSSTTCCHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             hhhhh----------hhhHHHHHHHhhhc--cCceeccccc---------cccccccchHHHHHHHHHhCccceeeccCc
Confidence            32111          11111244455555  5566665332         124567899999999999999999999999


Q ss_pred             CccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCC---------CCCceEEe
Q 020388          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (327)
Q Consensus       149 ~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~  215 (327)
                      |||||+||+++|+|+++++++++|+.+   .|+++|+++|++.|+++|||++|.|++.|         +..||+|+
T Consensus       163 dGvy~~dP~~~~~a~~~~~~~~~e~~~---~g~~~m~~~Aa~~a~~~gi~v~I~ng~~~~~i~~~l~Ge~vGTlIh  235 (236)
T d1ybda1         163 DGVYTADPKKDPSATRYETITFDEALL---KNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH  235 (236)
T ss_dssp             SSCBSSCGGGCTTCCBCSEEEHHHHHH---TTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred             cchhhccccccccceeeccccHHHHHh---cCchHHHHHHHHHHHHCCCcEEEEeCCCccHHHHHHcCCCCCcEeC
Confidence            999999999999999999999998755   48999999999999999999999999876         46799985

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=99.75  E-value=1.9e-18  Score=134.28  Aligned_cols=87  Identities=43%  Similarity=0.602  Sum_probs=77.9

Q ss_pred             cCCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhh
Q 020388          229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREAL  308 (327)
Q Consensus       229 ~~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~  308 (327)
                      +..+++|++.+|+|+|+++|.+|++.||+++|+|++|+++||||+||+|++|+.+|||+|+++|.++|+++||++|..+.
T Consensus         3 ~~~vk~I~~~~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~~Isf~V~~~d~~~a~~~L~~~f~~~~   82 (100)
T d2hmfa3           3 DSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVDKALKALKREFGDFG   82 (100)
T ss_dssp             SSSCCEEEEEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCEEEEECSTTHHHHHHHHHHHHCCC-
T ss_pred             CCceeEEEecCCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcceEEEEEeHHHHHHHHHHHHHHHHhhc
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999998766


Q ss_pred             cCCCCce
Q 020388          309 NAGRLSQ  315 (327)
Q Consensus       309 ~~~~~~~  315 (327)
                      ..+.+.+
T Consensus        83 ~~~~~~~   89 (100)
T d2hmfa3          83 KKSFLNN   89 (100)
T ss_dssp             ----CSC
T ss_pred             ccccccC
Confidence            6655554

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=99.74  E-value=2e-18  Score=124.23  Aligned_cols=67  Identities=40%  Similarity=0.646  Sum_probs=65.0

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhh
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~  307 (327)
                      +|+|+++|.+|++.||+++|+|++|+++||||.||+|++|+.+|+|+|+++|.++|+++||++|+++
T Consensus         1 Va~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~Is~~V~~~d~~~Av~~Lh~~F~~e   67 (67)
T d2hmfa2           1 VCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIEK   67 (67)
T ss_dssp             EEEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSEEEEEEEGGGHHHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCccceEEEEEeHHHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999999999999999999999999999999999999999999999864

>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.66  E-value=1.6e-15  Score=133.26  Aligned_cols=183  Identities=16%  Similarity=0.169  Sum_probs=131.9

Q ss_pred             ccHHHHHHHHHHHHhhhcC----------------------CCChhHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEccc
Q 020388           11 LSYEFIRSTYNFLSNVDSG----------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (327)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~~----------------------~~~~~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~   68 (327)
                      +-.++|+...+.|.++.+.                      .......+...+.+......++...+...|+........
T Consensus        24 l~~~~l~~ia~~I~~l~~~g~~Vv~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  103 (238)
T d1z9da1          24 IDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAI  103 (238)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             cCHHHHHHHHHHHHHHHHCCCEEEEEecccccccceeccccCCcchhHHHHHHHHHHHHHHHHHHHHhhCCccchhhhhh
Confidence            6778899998888887651                      234444555666677777778888999999988766543


Q ss_pred             ceeeccCCCCCCCCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeecc
Q 020388           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV  148 (327)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV  148 (327)
                      ......      ....   ....+.....   ..++...+.   +.     ....+++|..|+++|..++|+.++++|||
T Consensus       104 ~~~~~~------~~~~---~~~~i~~~~~---~~~~~~~~~---~~-----~~~~~~~d~~~~~~a~~~~a~~li~~tdV  163 (238)
T d1z9da1         104 PMQNVA------EPYI---RGRALRHLEK---NRIVVFGAG---IG-----SPYFSTDTTAALRAAEIEADAILMAKNGV  163 (238)
T ss_dssp             CBTTTB------EECC---HHHHHHHHHT---TCEEEEEST---TS-----CTTCCHHHHHHHHHHHTTCSEEEEEESSC
T ss_pred             hhHHHH------hhhh---HHHHHhhhcc---ccccceecc---ee-----ccCCCCchHHHHHHHHHhhhhhhcccccc
Confidence            321111      0011   1133333332   233332221   11     11235578899999999999999999999


Q ss_pred             CccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHhhHHHHHhCCCCEEEeecCCC---------CCCceEEeC
Q 020388          149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (327)
Q Consensus       149 ~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~a~~~a~~~~I~v~I~n~~~~---------e~~GT~I~~  216 (327)
                      ||+|++||+..++|++++++++.|..+   .|.++|+++|++.|.++|||++|.|++.|         +..||.|+.
T Consensus       164 dGvy~~~P~~~~~a~~~~~~~~~~~~~---~g~~~~k~~Aa~~a~~~gi~v~I~nG~~p~~i~~~l~Ge~~GTlIt~  237 (238)
T d1z9da1         164 DGVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSN  237 (238)
T ss_dssp             CSCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred             cceecccccccccchhhccccccchhc---cCcchhHHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCceEecc
Confidence            999999999999999999999987654   58899999999999999999999999876         567999975

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.64  E-value=7.8e-17  Score=118.28  Aligned_cols=67  Identities=28%  Similarity=0.381  Sum_probs=63.8

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhc
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALN  309 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~  309 (327)
                      |+|+++| +|...||+++|+|++|+++||||.||+|++|+.+|||+|+++|.++|+++||++|+++..
T Consensus         2 a~IsvVG-~~~~~~Giaarif~aL~~~~InV~mIsqg~se~~Is~vV~~~d~~~Av~~Lh~~f~~~~~   68 (75)
T d2cdqa3           2 AIISLIG-NVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALHKSFFESGD   68 (75)
T ss_dssp             EEEEEEE-CGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHHHHHHSSCC
T ss_pred             cEEEEEC-CCCCChhHHHHHHHHHHHcCCceEEEEcCccceEEEEEEeHHHHHHHHHHHHHHHhcCCC
Confidence            7999999 899999999999999999999999999999999999999999999999999999976533

>d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=1.6e-14  Score=131.67  Aligned_cols=167  Identities=17%  Similarity=0.105  Sum_probs=127.2

Q ss_pred             hHHHHhhhhcHHHHHHHHHHHHHHcCCceeEEcccceeeccC------CCCC---C-CCCCchHHHHHHHHHhhcCCCce
Q 020388           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNP------TSSN---Q-VDPDFSESEKRLEKWFSQSPSNT  103 (327)
Q Consensus        34 ~~~d~v~s~GE~~s~~l~~~~L~~~Gi~a~~l~~~~~~~~~~------~~~~---~-~~~~~~~~~~~i~~~l~~~~~~v  103 (327)
                      ...+.+......+....+...|++.|+++.++++.+......      ..++   . ..+|.    +.++.+++  .+.|
T Consensus        89 ~~~~~~~~~~~~~~n~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~d~~~~g~~~~v~~----~~i~~lL~--~~~i  162 (282)
T d2btya1          89 KTMEIVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNP----EILHALIE--NDYI  162 (282)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECT----HHHHHHHH--TTCE
T ss_pred             hhHHHHHHHHhchhhHHHHHHHHhcCCCeeeeeccccceeEeccccccccccccccccccCh----HHHHHHHh--CCCc
Confidence            333433333333446777889999999999998776533210      1111   1 23555    78888998  8999


Q ss_pred             EEecCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcC--C
Q 020388          104 IIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--A  181 (327)
Q Consensus       104 pVv~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g--~  181 (327)
                      ||++++ +.+..|++.++   ++|.+|+.+|.+|+|++++|+|||+|+|+       +++++++++..|+.++...+  .
T Consensus       163 pvi~~~-~~~~~g~~~nl---~~d~~aa~iA~~l~AdkLI~ltdv~Gl~~-------d~~~i~~~~~~~~~~~~~~~~~t  231 (282)
T d2btya1         163 PVIAPV-GIGEDGHSYNI---NADTAAAEIAKSLMAEKLILLTDVDGVLK-------DGKLISTLTPDEAEELIRDGTVT  231 (282)
T ss_dssp             EEEESE-EECSSSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSSCEE-------TTEECCEECHHHHHHHHTTTCSC
T ss_pred             eeecCc-ccCCcceeeec---cccchhHHHhhhcCCceeEEeccccceec-------CccccccCCHHHHHHHHHcCCcC
Confidence            999996 77888988775   47999999999999999999999999995       35789999999999888655  5


Q ss_pred             CcccHh--hHHHHHhCCCC-EEEeecCC----------CCCCceEEeCC
Q 020388          182 NVLHPR--TIIPVMRYDIP-IVIRNIFN----------LSVPGIMICRP  217 (327)
Q Consensus       182 ~v~~p~--a~~~a~~~~I~-v~I~n~~~----------~e~~GT~I~~~  217 (327)
                      ++|.+|  ++..|.++|++ ++|.|+..          .+..||+|+..
T Consensus       232 gGM~~Kl~aA~~A~~~GV~~v~I~~g~~~~~ll~elft~~g~GT~I~~~  280 (282)
T d2btya1         232 GGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL  280 (282)
T ss_dssp             TTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred             chHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhCCCCceEEEEeC
Confidence            688885  78888899998 99998753          34569999753

>d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.59  E-value=8.9e-15  Score=134.63  Aligned_cols=154  Identities=12%  Similarity=0.176  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHcCCceeEEcccceeeccCCC-----------------CCC----CCCCchHHHHHHHHHhhcCCCceEEe
Q 020388           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTS-----------------SNQ----VDPDFSESEKRLEKWFSQSPSNTIIA  106 (327)
Q Consensus        48 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~-----------------~~~----~~~~~~~~~~~i~~~l~~~~~~vpVv  106 (327)
                      ...+.+.|.+.|+++.++++.+...+...+                 ++.    ..++.    +.++.+++  .+.|||+
T Consensus       108 n~~lv~~l~~~g~~a~~l~~~d~~~i~~~~~~~~~~~~~~~~~~~id~g~~G~v~~v~~----~~i~~ll~--~g~Ipvi  181 (300)
T d2bufa1         108 NKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNV----GLLNMLVK--GDFIPVI  181 (300)
T ss_dssp             HHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECH----HHHHHHHH--TTCEEEE
T ss_pred             HHHHHHHHHhcCCcccccCCCccceEEeecccccccCcccccccccccCcccceeecch----hHHHHHhc--CCCeEEe
Confidence            456788999999999999887754332111                 111    12444    77888888  8999999


Q ss_pred             cCceecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCC--Ccc
Q 020388          107 TGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA--NVL  184 (327)
Q Consensus       107 ~Gfi~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~--~v~  184 (327)
                      ++ ++.+.+|+..++   ++|.+|+.+|.+|+|++|+|+|||||||+.+      .+++++++.+++.++...|.  ++|
T Consensus       182 s~-~~~~~~G~~~ni---n~D~~Aa~lA~~L~AdkLI~Ltdv~Gv~~~~------g~~~~~l~~~~~~~li~~~~i~gGM  251 (300)
T d2bufa1         182 AP-IGVGSNGESYNI---NADLVAGKVAEALKAEKLMLLTNIAGLMDKQ------GQVLTGLSTEQVNELIADGTIYGGM  251 (300)
T ss_dssp             EE-EEECTTSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSCCBCTT------SCBCCEECHHHHHHHHHTTCSCTTH
T ss_pred             cc-cccCcccchhcc---cHHHHHHHHHHHcCCCeEEEEcCCCccccCC------CcchhhccHHHHHHHHHcCCcCchH
Confidence            98 588999998887   4899999999999999999999999999654      45789999999999988664  789


Q ss_pred             cHh--hHHHHHhCCCC-EEEeecCCC----------CCCceEEeCC
Q 020388          185 HPR--TIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRP  217 (327)
Q Consensus       185 ~p~--a~~~a~~~~I~-v~I~n~~~~----------e~~GT~I~~~  217 (327)
                      .||  ++..|.++|++ ++|.|+..|          +..||.|+.+
T Consensus       252 ~~Kl~aa~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~~~  297 (300)
T d2bufa1         252 LPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR  297 (300)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHcCCCCceeEEecC
Confidence            996  77778889997 999987543          4579999765

>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=6.8e-16  Score=109.81  Aligned_cols=64  Identities=33%  Similarity=0.601  Sum_probs=60.1

Q ss_pred             eeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (327)
Q Consensus       241 la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~  306 (327)
                      +|+|+++|.+|++.||+.+|+|++|++  +||.|++|++|+++|||+|+++|.++|+++||++|++
T Consensus         1 la~IsvvG~gm~~~~gi~arif~~L~~--~nI~~i~~~~Se~~is~vV~~~d~~~Av~aLh~~Ffe   64 (64)
T d2j0wa3           1 LALVALIGNDLSKACGVGKEVFGVLEP--FNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE   64 (64)
T ss_dssp             EEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEESSCTTEEEEEEEGGGHHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCcccCccHHHHHHHHHhh--CCCeEEEEEcCccEEEEEEcHHHHHHHHHHHHHHhcC
Confidence            589999999999999999999999975  6777899999999999999999999999999999974

>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=1.9e-14  Score=131.58  Aligned_cols=155  Identities=12%  Similarity=0.169  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHcCCceeEEcccceeeccCC-----------CCCC----CCCCchHHHHHHHHHhhcCCCceEEecCceec
Q 020388           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPT-----------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (327)
Q Consensus        48 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~-----------~~~~----~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~  112 (327)
                      .+.+.+.+.+.|+.+..+.+.+.......           .++.    ..++.    +.|..+++  .+.|||++++ +.
T Consensus       107 ~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~G~v~~v~~----~~I~~ll~--~g~ipvi~~~-~~  179 (291)
T d2ap9a1         107 GRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNT----AAMLDLVA--AGRIPVVSTL-AP  179 (291)
T ss_dssp             HHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECH----HHHHHHHH--TTCEEEEESE-EE
T ss_pred             HHHHHHHHHhcCCccccchhhhcccccccccccccccccccceeecccccchH----HHHHHHHh--cCCCcccCcc-cc
Confidence            45668888999999988876554332100           1111    12444    77888998  8999999996 78


Q ss_pred             CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHhcCCCcccHh--hHH
Q 020388          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR--TII  190 (327)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~~g~~v~~p~--a~~  190 (327)
                      +.+|+..++   ++|.+|+.+|.+|+|++|+|+|||||||+.+|+.   ..++++++..|+.++...+.++|.||  ++.
T Consensus       180 ~~~g~~~n~---d~D~lAa~lA~~l~AdkLI~LTdv~Gv~~~~~~~---~~~~~~~~~~~~~~~~~~~~gGM~~Kl~aA~  253 (291)
T d2ap9a1         180 DADGVVHNI---NADTAAAAVAEALGAEKLLMLTDIDGLYTRWPDR---DSLVSEIDTGTLAQLLPTLELGMVPKVEACL  253 (291)
T ss_dssp             CTTCCEEEE---CHHHHHHHHHHHTTCSEEEEEESSSSEETTTTCT---TCEESEEEHHHHHHHGGGSCTTTHHHHHHHH
T ss_pred             CCccccccc---cHHHHHHHHHHhcCCcEEEEeeccCccccccccc---ccccccCCHHHHHHHHhhhhCchHHHHHHHH
Confidence            888988765   5899999999999999999999999999998864   35778889999999988888999996  777


Q ss_pred             HHHhCCCC-EEEeecCCC----------CCCceEEe
Q 020388          191 PVMRYDIP-IVIRNIFNL----------SVPGIMIC  215 (327)
Q Consensus       191 ~a~~~~I~-v~I~n~~~~----------e~~GT~I~  215 (327)
                      .|.++|+| ++|.++..+          +..||+|.
T Consensus       254 ~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~  289 (291)
T d2ap9a1         254 RAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVV  289 (291)
T ss_dssp             HHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEE
T ss_pred             HHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCceEEe
Confidence            78889998 999887533          44699885

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.45  E-value=4.1e-14  Score=107.45  Aligned_cols=86  Identities=14%  Similarity=0.219  Sum_probs=72.9

Q ss_pred             CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHhhhc
Q 020388          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALN  309 (327)
Q Consensus       230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~~~~  309 (327)
                      ..+++|++.+|+++|+++|.+|++.||+++++|++|+++||||+||+|  |+.+|||+++++|..++...+++.+...-.
T Consensus         2 ~~v~~I~~~~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~--Se~~is~~v~~~~~~~a~~~~~~~~~~~~e   79 (91)
T d2cdqa2           2 SILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPSKLWSRELIQQELDHVVEE   79 (91)
T ss_dssp             CCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE--ETTEEEEEECCGGGSSSCCCHHHHHHHHHH
T ss_pred             CceEEEEEeCCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEe--cCCeEEEEEchhHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999995  699999999999998888888765543222


Q ss_pred             CCCCceeE
Q 020388          310 AGRLSQFS  317 (327)
Q Consensus       310 ~~~~~~~~  317 (327)
                      ...+..++
T Consensus        80 l~~ia~Vs   87 (91)
T d2cdqa2          80 LEKIAVVN   87 (91)
T ss_dssp             HTTTSEEE
T ss_pred             HhCCceEE
Confidence            24444443

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.4e-14  Score=110.16  Aligned_cols=75  Identities=19%  Similarity=0.232  Sum_probs=70.7

Q ss_pred             CCeeeEEeecCeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHHHHh
Q 020388          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (327)
Q Consensus       230 ~~v~~i~~~~~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~f~~  306 (327)
                      +.+++|++.+|+++|+++|.+|...||+++++|++|+++||||+||++  |+.+|||+|+++|.++++++||.+|+.
T Consensus         3 p~vk~I~~~~~~~~i~v~g~~m~~~~G~~~~if~~L~~~~Inv~mis~--Se~~is~~v~~~~~~~av~~L~~~~~~   77 (91)
T d2j0wa2           3 PLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITT--SEVSVALTLDTTGSTSTGDTLLTQSLL   77 (91)
T ss_dssp             CSEEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEE--ETTEEEEEECCCCCSSTTCCSSCHHHH
T ss_pred             CcceEEEEeCCEEEEEEEeCCCCCCcCHHHHHHHHHHHcCCcEEEEEc--cCcEEEEEEchhHHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999999999999994  699999999999999999999987754

>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: Carbamate kinase
domain: Carbamate kinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.35  E-value=5.5e-12  Score=116.06  Aligned_cols=119  Identities=16%  Similarity=0.166  Sum_probs=90.8

Q ss_pred             HHHHHHhhcCCCceEEecCceec-------CCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCC
Q 020388           90 KRLEKWFSQSPSNTIIATGFIAS-------TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gfi~~-------~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a  162 (327)
                      ..+..+++  .+.+|++.+....       +.+|+..+   .++|..|+.+|.+|+|+.++|+|||||||+.+|+  +++
T Consensus       176 ~~i~~~~~--~~~i~vl~~~~~~~v~~~~~~~~G~~~n---inaD~lAa~vA~~l~Ad~LIlLTdv~Gv~~~~~~--~~~  248 (313)
T d1e19a_         176 ETIKKLVE--RGVIVIASGGGGVPVILEDGEIKGVEAV---IDKDLAGEKLAEEVNADIFMILTDVNGAALYYGT--EKE  248 (313)
T ss_dssp             HHHHHHHH--TTCEEECSGGGCEEEEEETTEEEECCCC---CCHHHHHHHHHHHTTCSEEEEEESSSSCEETTTS--TTC
T ss_pred             cceeeccc--cchhhhhccCCCCCccccCCCcCceEEe---cchhHHHHHHHHHHHHHHHHhccCCcceeccCCC--ccc
Confidence            66777887  7899998764221       11344444   4689999999999999999999999999997665  578


Q ss_pred             eEEeecCHHHHHHHHhc---CCCcccHh--hHHHHHhCCC-CEEEeecC------CCCCCceEEeC
Q 020388          163 VILRTLSYQEAWEMSYF---GANVLHPR--TIIPVMRYDI-PIVIRNIF------NLSVPGIMICR  216 (327)
Q Consensus       163 ~~i~~is~~ea~~l~~~---g~~v~~p~--a~~~a~~~~I-~v~I~n~~------~~e~~GT~I~~  216 (327)
                      +++++++.+|+.++...   +.++|.||  |+..|.+.|+ +++|.+..      +.+ .||.|.|
T Consensus       249 ~~i~~l~~~e~~~li~~g~~~~GGM~~Kv~aA~~a~~~Gv~~v~I~~~~~i~~~l~g~-~GT~i~P  313 (313)
T d1e19a_         249 QWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEGK-TGTQVLP  313 (313)
T ss_dssp             EECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTTS-SSEEEEC
T ss_pred             ceeeeCCHHHHHHHhhCCCcccCChHHHHHHHHHHHHhCCCEEEECChHHHHHHHCCC-CCCEEcC
Confidence            99999999999999864   45779996  6666667776 58786542      232 5999865

>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: Carbamate kinase
domain: Carbamate kinase
species: Enterococcus faecium [TaxId: 1352]

Probab=99.31  E-value=2.4e-12  Score=117.87  Aligned_cols=108  Identities=17%  Similarity=0.198  Sum_probs=84.3

Q ss_pred             HHHHHHhhcCCCceEEecCc-----eecCCCCCeeeecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeE
Q 020388           90 KRLEKWFSQSPSNTIIATGF-----IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (327)
Q Consensus        90 ~~i~~~l~~~~~~vpVv~Gf-----i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~  164 (327)
                      ..+...++  .+.+|+..+-     .+.+.+|+..+   .++|.+|+.+|.+|+|++++|+|||||||+++|+  ++.++
T Consensus       172 ~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~g~~~n---inaD~lAa~iA~~l~Ad~Li~lTdv~Gv~~~~~~--~~~~~  244 (307)
T d1b7ba_         172 ETINTLIK--NDIITISCGGGGIPVVGQELKGVEAV---IDKDFASEKLAELVDADALVILTGVDYVCINYGK--PDEKQ  244 (307)
T ss_dssp             HHHHHHHH--TTEEEECSGGGCEEEETTTTEECSCC---CCHHHHHHHHHHHHTCSEEEEECSSSSCEETTTS--TTCEE
T ss_pred             hhhhhhhh--cCceeeccCCccccccccCCCCcEEe---cchhHHHHHHHHHhhhhheeeccccCceeeCCCc--ccccc
Confidence            55666666  6778876442     13344566654   4689999999999999999999999999999875  56789


Q ss_pred             EeecCHHHHHHHHhcC---CCcccHh--hHHHHHhCCCC-EEEeec
Q 020388          165 LRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDIP-IVIRNI  204 (327)
Q Consensus       165 i~~is~~ea~~l~~~g---~~v~~p~--a~~~a~~~~I~-v~I~n~  204 (327)
                      +++++.+|+.++...|   .++|.||  |+..|.++|++ ++|.+.
T Consensus       245 i~~l~~~e~~~l~~~g~~~~GGM~pKl~aA~~al~~Gv~~~~ii~~  290 (307)
T d1b7ba_         245 LTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS  290 (307)
T ss_dssp             CSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHTTSTTCEEEEEC
T ss_pred             cccCCHHHHHHHHHCCCcccCChHHHHHHHHHHHHcCCCeEEEECC
Confidence            9999999999998754   5789997  88888999995 555543

>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=3.7e-07  Score=79.34  Aligned_cols=151  Identities=13%  Similarity=0.069  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHcCCceeEEcccceeeccC----CCC---CC-CCCCchHHHHHHHHHhhcCCCceEEecCceecCCCCCee
Q 020388           48 AQMLAAVVRKNGIDCKWMDTREVLIVNP----TSS---NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPT  119 (327)
Q Consensus        48 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~----~~~---~~-~~~~~~~~~~~i~~~l~~~~~~vpVv~Gfi~~~~~g~~~  119 (327)
                      ...+...+...|.++..+..........    ..+   +. ..++.    ..+...+.  .+.+|++.++ +.+.++...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~--~~~i~v~~~~-~~~~~~~~~  157 (258)
T d1gs5a_          85 NKTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSP----KLINSLLE--NGYLPVVSSI-GVTDEGQLM  157 (258)
T ss_dssp             HHHHHHHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCC----HHHHHHHH--TTCEEEECSE-EECTTSCEE
T ss_pred             HHHHHHHHhccCcccccccccccccccccccccccccccccccccc----chHHHHHh--cccccccccc-ccccCCcEE
Confidence            5566778889999998877654322110    001   01 23445    56677777  7899999986 666677766


Q ss_pred             eecCCcchHHHHHHHHHhCCceEEEeeccCccccCCCCCCCCCeEEeecCHHHHHHHHh--cCCCcccHh--hHHHHHhC
Q 020388          120 TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--FGANVLHPR--TIIPVMRY  195 (327)
Q Consensus       120 ~lgrggsD~~A~~lA~~l~A~~l~~~tDV~Gi~t~dP~~~~~a~~i~~is~~ea~~l~~--~g~~v~~p~--a~~~a~~~  195 (327)
                      ++   .+|.+|+.+|..++|+. ++++|++|++..++.      +.+.++..+......  .+.++|.||  |+..|.++
T Consensus       158 ~~---~~~~~a~~~a~~l~a~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aA~~a~~~  227 (258)
T d1gs5a_         158 NV---NADQAATALAATLGADL-ILLSDVSGILDGKGQ------RIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAART  227 (258)
T ss_dssp             EC---CHHHHHHHHHHHHTCEE-EEEESSSSCBCTTSC------BCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHH
T ss_pred             Ee---chhhhhhhHHHHHHhhh-hhhcccccccccccc------cccccchHHHHHHHhCCcccchHHHHHHHHHHHHHc
Confidence            54   47999999999999986 567889999977654      344555666555543  457889996  78888899


Q ss_pred             CCC-EEEeecCCC---------CCCceEEe
Q 020388          196 DIP-IVIRNIFNL---------SVPGIMIC  215 (327)
Q Consensus       196 ~I~-v~I~n~~~~---------e~~GT~I~  215 (327)
                      |++ ++|.++..|         +..||.|.
T Consensus       228 Gv~~v~I~~g~~~~~L~~l~~g~~~GT~i~  257 (258)
T d1gs5a_         228 LGRPVDIASWRHAEQLPALFNGMPMGTRIL  257 (258)
T ss_dssp             HTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred             CCCEEEEEeCCCchHHHHHhcCCCCceEEe
Confidence            996 899987543         45699884

>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Atu0741-like
domain: Hypothetical protein Atu0741
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.27  E-value=0.0089  Score=40.91  Aligned_cols=58  Identities=12%  Similarity=0.229  Sum_probs=47.4

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHH
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK  303 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~  303 (327)
                      .+++.|..-.+..|+.+++.+.|+++||++..+|.  -... -++|++++.++|++.|.+.
T Consensus         4 ~l~v~g~l~l~~vGi~a~i~~~La~a~Is~~~vSt--y~~D-~ilVp~~~~~~A~~~L~~~   61 (66)
T d1zhva2           4 CFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVST--FDGD-HLLVRSNDLEKTADLLANA   61 (66)
T ss_dssp             EEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEEC--SSCE-EEEEEGGGHHHHHHHHHHT
T ss_pred             EEEEccCCCchhHhHHHHHHHHHHHCCCCeEEEEe--eecc-EEEEEHHHHHHHHHHHHHc
Confidence            45677765557899999999999999999999983  2333 4679999999999999764

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.21  E-value=0.027  Score=39.85  Aligned_cols=57  Identities=23%  Similarity=0.387  Sum_probs=40.7

Q ss_pred             eEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCc--cEEEEEe--cc-ccHHHHHHHHH
Q 020388          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE--HSVCFAV--PE-KEVKAVAEALE  301 (327)
Q Consensus       242 a~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~--~sIs~~V--~~-~d~~~av~~Lh  301 (327)
                      ++|+++|   .++||+.+++.+.|+++|+||.-++|....  ..+.+.+  +. .+.+++.+.|.
T Consensus         3 ~vitv~g---~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~~~~~l~~~l~   64 (83)
T d1zpva1           3 AIITVVG---KDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFE   64 (83)
T ss_dssp             EEEEEEE---SCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHH
T ss_pred             EEEEEEc---CCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCCCHHHHHHHHH
Confidence            5789998   478999999999999999999999987543  3333333  32 24555444443

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=95.65  E-value=0.025  Score=39.03  Aligned_cols=56  Identities=9%  Similarity=0.175  Sum_probs=42.6

Q ss_pred             EEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC-ccEEEEEeccccHHHHHHHHHHH
Q 020388          244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS-EHSVCFAVPEKEVKAVAEALESK  303 (327)
Q Consensus       244 IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s-~~sIs~~V~~~d~~~av~~Lh~~  303 (327)
                      ++|.   +.+.||.++++.+.|+++||||..++.+.+ +..++-++ -++-+++.+.|++.
T Consensus         6 isV~---~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Rii-v~~~e~a~~~L~~~   62 (70)
T d2f06a2           6 LSIF---LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI-VSDPDKAYKALKDN   62 (70)
T ss_dssp             EEEE---ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE-ESCHHHHHHHHHHT
T ss_pred             EEEE---EeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEE-ECChHHHHHHHHHC
Confidence            5565   568999999999999999999999997665 34443332 24778888888764

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=95.57  E-value=0.01  Score=41.15  Aligned_cols=53  Identities=15%  Similarity=0.285  Sum_probs=41.9

Q ss_pred             CCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHHH
Q 020388          251 MAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK  303 (327)
Q Consensus       251 ~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~~  303 (327)
                      +.+.||-++++.+.|+++||||..+.-..+...=.+.+.-+|.++|.+.|.+.
T Consensus         6 v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~~~a~~~L~~~   58 (71)
T d2f06a1           6 CPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKEK   58 (71)
T ss_dssp             EESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHT
T ss_pred             ecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCHHHHHHHHHHC
Confidence            67899999999999999999998876544433333555557899999999875

>d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: VC0802-like
domain: Hypothetical protein VC0802
species: Vibrio cholerae [TaxId: 666]

Probab=95.15  E-value=0.043  Score=36.99  Aligned_cols=57  Identities=14%  Similarity=0.131  Sum_probs=44.0

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCCccEEEEEeccccHHHHHHHHHH
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s~~sIs~~V~~~d~~~av~~Lh~  302 (327)
                      .|++--..-.+..|+.+.+-+.|+++||.+..++.   -..=-++||+++.++|++.|.+
T Consensus         5 ~ItL~vhssLe~VGl~A~is~~La~~~Is~nvis~---~~hDhifVp~~~~~~Al~~L~~   61 (64)
T d1zvpa2           5 LITLTVHSSLEAVGLTAAFATKLAEHGISANVIAG---YYHDHIFVQKEKAQQALQALGE   61 (64)
T ss_dssp             EEEEECCC--CCSCHHHHHHHHHHHTTCCCEEEEC---SSCEEEEEEGGGHHHHHHHHTT
T ss_pred             EEEEecCCchHHHhHHHHHHHHHHHCCCCeEEEEe---eccceEEEchhhHHHHHHHHHH
Confidence            34444444456789999999999999999999983   3444588999999999999864

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=95.14  E-value=0.043  Score=39.03  Aligned_cols=47  Identities=21%  Similarity=0.345  Sum_probs=36.6

Q ss_pred             CeeEEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecCC--ccEEEEEec
Q 020388          240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVP  289 (327)
Q Consensus       240 ~la~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~s--~~sIs~~V~  289 (327)
                      ...+|+++|   .+.||+.+++.+.|+++|+||.-++|..-  ...+.+.|.
T Consensus         4 ~~~vitv~G---~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~   52 (86)
T d1u8sa1           4 QHLVITAVG---TDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS   52 (86)
T ss_dssp             EEEEEEEEE---ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEEEEEe---CCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEE
Confidence            346799999   47899999999999999999999887654  334444444

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=92.01  E-value=0.17  Score=35.39  Aligned_cols=50  Identities=16%  Similarity=0.258  Sum_probs=37.3

Q ss_pred             CCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEecccc--HHHHHHHHH
Q 020388          252 AGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEKE--VKAVAEALE  301 (327)
Q Consensus       252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~~~d--~~~av~~Lh  301 (327)
                      .+.||+++|+...|+..|.|+..++-+.++    .++++++..++  .+++.+.|+
T Consensus        11 ~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~   66 (78)
T d2fgca2          11 HNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAY   66 (78)
T ss_dssp             ECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHT
T ss_pred             eCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHh
Confidence            478999999999999999999999977653    45777776443  344444443

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.98  E-value=0.12  Score=35.91  Aligned_cols=57  Identities=9%  Similarity=0.123  Sum_probs=40.4

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEecC-----CccEEEEEecc-c-cHHHHHHHHHH
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS-----SEHSVCFAVPE-K-EVKAVAEALES  302 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq~~-----s~~sIs~~V~~-~-d~~~av~~Lh~  302 (327)
                      -|.+..   .+.||+++.+...++++++||..++|..     .+..+++-+.. . +.++++..|.+
T Consensus         3 ~i~i~~---~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~   66 (77)
T d1y7pa2           3 GLRIIA---ENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKT   66 (77)
T ss_dssp             EEEEEE---ECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHT
T ss_pred             eEEEEE---ecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHc
Confidence            345553   4789999999999999999999998764     35678887754 3 68888877754

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=91.76  E-value=0.15  Score=35.56  Aligned_cols=51  Identities=18%  Similarity=0.261  Sum_probs=38.0

Q ss_pred             CCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEeccc--cHHHHHHHHHH
Q 020388          252 AGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEK--EVKAVAEALES  302 (327)
Q Consensus       252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~~~--d~~~av~~Lh~  302 (327)
                      .+.||+++|+...|+..|.|++.++.+.++    .++++++...  ..++.++.|++
T Consensus        10 eN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~K   66 (77)
T d2pc6a2          10 ENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNK   66 (77)
T ss_dssp             ECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred             ECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhC
Confidence            478999999999999999999999987653    4577776544  34444444444

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.45  E-value=0.29  Score=33.93  Aligned_cols=51  Identities=14%  Similarity=0.209  Sum_probs=38.9

Q ss_pred             CCcccHHHHHHHHHHhCCCCEEEEEecCC---c-cEEEEEeccccHHHHHHHHHH
Q 020388          252 AGVPGTANAIFGAVKDVGANVIMISQASS---E-HSVCFAVPEKEVKAVAEALES  302 (327)
Q Consensus       252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s---~-~sIs~~V~~~d~~~av~~Lh~  302 (327)
                      .+.||+++++-+.|+++||||..+..+..   . --+.+.+++.-.+++++.|.+
T Consensus        11 ~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~~~~~~vl~~I~~   65 (78)
T d1ygya3          11 VDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAA   65 (78)
T ss_dssp             SCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCCCccHHHHHHHHc
Confidence            57899999999999999999998764322   2 234455677777888888876

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=90.76  E-value=0.2  Score=34.82  Aligned_cols=51  Identities=14%  Similarity=0.297  Sum_probs=37.4

Q ss_pred             CCcccHHHHHHHHHHhCCCCEEEEEecCCc----cEEEEEecccc--HHHHHHHHHH
Q 020388          252 AGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEKE--VKAVAEALES  302 (327)
Q Consensus       252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~s~----~sIs~~V~~~d--~~~av~~Lh~  302 (327)
                      .+.||+++|+...|+..|.||+.++-+.++    .++++++..++  .++.++.|.+
T Consensus         9 ~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~K   65 (76)
T d2f1fa1           9 ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHK   65 (76)
T ss_dssp             ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             ECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhC
Confidence            478999999999999999999999987653    35777765543  3444444443

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=88.06  E-value=1.1  Score=31.61  Aligned_cols=32  Identities=16%  Similarity=0.065  Sum_probs=27.8

Q ss_pred             EEEeecCCCCCcccHHHHHHHHHHhCCCCEEEEEe
Q 020388          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (327)
Q Consensus       243 ~IsIvG~~~~~~~~v~a~if~~L~~~gI~V~~Isq  277 (327)
                      -|.|.|.   ++||+.+++-+.|+++|+||.-+++
T Consensus         8 ~v~v~g~---DrpGIV~~it~~la~~~~nI~~l~t   39 (93)
T d1u8sa2           8 EVYVESD---DKLGLTEKFTQFFAQRQIGMASLSA   39 (93)
T ss_dssp             EEEEEES---CCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEEEEEC---CCCCHHHHHHHHHHHcCCCchhhhc
Confidence            4667774   7899999999999999999988775

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=87.44  E-value=0.44  Score=33.34  Aligned_cols=28  Identities=18%  Similarity=0.252  Sum_probs=24.6

Q ss_pred             CCcccHHHHHHHHHHhCCCCEEEEEecC
Q 020388          252 AGVPGTANAIFGAVKDVGANVIMISQAS  279 (327)
Q Consensus       252 ~~~~~v~a~if~~L~~~gI~V~~Isq~~  279 (327)
                      .+.||+++++.+.|+++|+||.....+.
T Consensus        19 ~d~PGvla~I~~~l~~~~iNI~~~~~~~   46 (84)
T d1sc6a3          19 ENRPGVLTALNKIFAEQGVNIAAQYLQT   46 (84)
T ss_dssp             ESCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CCcCCHHHHHHHHHHHcCCCHHHhcccc
Confidence            5789999999999999999998876544