Citrus Sinensis ID: 020397

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
MENHNSILAENGNGAVSEQGRSALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIPVQLSHDGLRIPIDL
cccccccHHHcccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccEEEEEEccccHHHHHHHHHHccccccccEEEEEcccccccccHHHHHHHcccccccccccccEEEcHHHHHHHHHcccccEEcccccccccccccccccEEEEccccccEEEEcEEEEEEEccccccEEEEEEEEccccEEEEEcccccccccHHHHHHHcccccccEEEEccccccccccccccHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHccccEEEccccEEEEEcc
cccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccccEEEEEEccHHHHHHHHHHHHHcccccEEEEEEEcccHcHHccccccHcHHccccccccccccEEccHHHHHHHHHHcccEEEccccccccccEEcEEcccccccccccccccccEEEEEEEccccccccEEEEEEcccccEEEEcccccccHHHHHHHcHHHHccccEEEEEcccccccccccccHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHcccccEEccccEEEEEcc
MENHNSIlaengngavseQGRSALIFLGtgcssalpntmcllqpsdppcqvcfpalsippnlnpnyrcntsllidhcegdgkhsyILIDVGKTFREQILRWFTfhkiprvdsiilthehadavlglddiravqpysatndidptpifLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIeedcdkpfvasglkfvplpvmhgedyvclgfLFGEKCRVAYisdvsripptteyvisksgagqlDLLILDTlykdgchnthfcfpqTLEAVKRLCPKQALLigmthefdhhkdneflaewskregipvqlshdglripidl
MENHNSILAENGNGAVSEQGRSALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKiieedcdkpfVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSkregipvqlshdglripidl
MENHNSILAENGNGAVSEQGRSALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIPVQLSHDGLRIPIDL
*********************SALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIPVQ************
***********************LIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALS******PNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIPVQLSHDGLRIPIDL
MENHNSILAENGNGAVSEQGRSALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIPVQLSHDGLRIPIDL
*******************GRSALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIPVQLSHDGLRIPIDL
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MENHNSILAENGNGAVSEQGRSALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIPVQLSHDGLRIPIDL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query326 2.2.26 [Sep-21-2011]
O74545301 Putative hydrolase C777.0 yes no 0.837 0.906 0.343 3e-36
Q7MUY1 492 Octanoyltransferase OS=Po yes no 0.782 0.518 0.279 2e-14
>sp|O74545|YCV6_SCHPO Putative hydrolase C777.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC777.06c PE=4 SV=1 Back     alignment and function desciption
 Score =  152 bits (385), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/320 (34%), Positives = 167/320 (52%), Gaps = 47/320 (14%)

Query: 19  QGRSALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCE 78
           +G S L+F+GTGCSS +PN +C L    P C+ C  +L+  P    N R NTS+L+   +
Sbjct: 3   KGTSKLLFMGTGCSSGIPN-VCCLTLEKPTCRTCLASLT--PEGRKNNRFNTSVLLQVDD 59

Query: 79  GDG-KHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRA-----V 132
           G G +   ILID GK F    L+ F  HKI  +D++ILTH+HADA+ G+DD+R      +
Sbjct: 60  GSGDRPKNILIDCGKHFYVSALKHFVEHKIRYLDAVILTHDHADAINGMDDLREWTLGFL 119

Query: 133 QPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKP 192
           QP           I+L++   + I   FPY+V  K   G     V   D+ +     DKP
Sbjct: 120 QP--------SVKIYLTERTYKVIERSFPYMVNAKNATGG--GSVPTFDFHVFSP--DKP 167

Query: 193 FVAS--GLKFVPLPVMHG---------EDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVI 241
           F      +   PLPV HG         + Y C+GF  G+   ++YISD + +PPTT+ ++
Sbjct: 168 FKLDDIDISVTPLPVHHGVYFIEGKESQTYFCMGFRVGD---MSYISDCNYVPPTTKKLM 224

Query: 242 SKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRL--CPKQALLIGMTHEFDHHKDN 299
             S     +++++D L K   + +HF F Q  E +  L   P + L  G +H+ +H   N
Sbjct: 225 EGS-----NVVVVDAL-KHEPYPSHFSFKQAEEFIASLEHVPSRVLYTGFSHKVEH---N 275

Query: 300 EFLAEWSKREGIPVQLSHDG 319
           E + E S  + +P + ++DG
Sbjct: 276 ETVKELSVLK-VPTEPAYDG 294

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q7MUY1|LIPB_PORGI Octanoyltransferase OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) GN=lipB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query326
297740764406 unnamed protein product [Vitis vinifera] 0.993 0.798 0.792 1e-157
225443948325 PREDICTED: putative hydrolase C777.06c-l 0.993 0.996 0.792 1e-156
30691663324 metallo-beta-lactamase domain-containing 0.984 0.990 0.810 1e-155
12320859323 hypothetical protein [Arabidopsis thalia 0.984 0.993 0.810 1e-155
449515291324 PREDICTED: putative hydrolase C777.06c-l 0.978 0.984 0.802 1e-154
449466119324 PREDICTED: putative hydrolase C777.06c-l 0.978 0.984 0.799 1e-154
297845964323 hypothetical protein ARALYDRAFT_473254 [ 0.978 0.987 0.812 1e-153
359483908319 PREDICTED: putative hydrolase C777.06c-l 0.938 0.959 0.810 1e-151
224116402319 predicted protein [Populus trichocarpa] 0.972 0.993 0.782 1e-150
357447177320 Hydrolase-like protein [Medicago truncat 0.981 1.0 0.759 1e-147
>gi|297740764|emb|CBI30946.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 259/327 (79%), Positives = 299/327 (91%), Gaps = 3/327 (0%)

Query: 1   MENHNSILAENGNGA-VSEQGRSALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIP 59
           ME+ N  LAENG+ +  + + RS+LI LGTGCSS +PN MCL+QPSDPPC VCF +LS+P
Sbjct: 82  MESGN--LAENGHCSDAAGEPRSSLILLGTGCSSVVPNAMCLIQPSDPPCNVCFQSLSLP 139

Query: 60  PNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEH 119
           P  NPNYRCNTSLLID+C+ +G+H YILIDVGKTFREQ++RWFTF+KIP+VDSIILTHEH
Sbjct: 140 PERNPNYRCNTSLLIDYCQNNGEHKYILIDVGKTFREQVIRWFTFYKIPQVDSIILTHEH 199

Query: 120 ADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQ 179
           ADAVLGLDD+RAVQP+S TNDI PTP++LSQ+AMESI+TKFPYLV+KKLKEGQE+RRVAQ
Sbjct: 200 ADAVLGLDDMRAVQPFSPTNDISPTPVYLSQYAMESIATKFPYLVKKKLKEGQELRRVAQ 259

Query: 180 LDWKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEY 239
           LDWKIIE + +KPFVASGL+FVPLPVMHGEDY+CLGFLFGEKC+VAYISD+SR P +TEY
Sbjct: 260 LDWKIIESNHEKPFVASGLQFVPLPVMHGEDYLCLGFLFGEKCKVAYISDISRFPSSTEY 319

Query: 240 VISKSGAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDN 299
           VISK+G GQLDLLILDTLYK G HNTHFCFPQTLEAVKR+CPK+ALL+GMTHEFDHHKDN
Sbjct: 320 VISKNGGGQLDLLILDTLYKKGSHNTHFCFPQTLEAVKRICPKRALLVGMTHEFDHHKDN 379

Query: 300 EFLAEWSKREGIPVQLSHDGLRIPIDL 326
           E L EWS+REGIPVQL+HDGLR+PIDL
Sbjct: 380 ETLMEWSRREGIPVQLAHDGLRVPIDL 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225443948|ref|XP_002279654.1| PREDICTED: putative hydrolase C777.06c-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|30691663|ref|NP_174321.2| metallo-beta-lactamase domain-containing protein [Arabidopsis thaliana] gi|38566676|gb|AAR24228.1| At1g30300 [Arabidopsis thaliana] gi|40824143|gb|AAR92355.1| At1g30300 [Arabidopsis thaliana] gi|332193083|gb|AEE31204.1| metallo-beta-lactamase domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|12320859|gb|AAG50569.1|AC073506_11 hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449515291|ref|XP_004164683.1| PREDICTED: putative hydrolase C777.06c-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449466119|ref|XP_004150774.1| PREDICTED: putative hydrolase C777.06c-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297845964|ref|XP_002890863.1| hypothetical protein ARALYDRAFT_473254 [Arabidopsis lyrata subsp. lyrata] gi|297336705|gb|EFH67122.1| hypothetical protein ARALYDRAFT_473254 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|359483908|ref|XP_003633034.1| PREDICTED: putative hydrolase C777.06c-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224116402|ref|XP_002317290.1| predicted protein [Populus trichocarpa] gi|222860355|gb|EEE97902.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357447177|ref|XP_003593864.1| Hydrolase-like protein [Medicago truncatula] gi|355482912|gb|AES64115.1| Hydrolase-like protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query326
TAIR|locus:2009827324 AT1G30300 "AT1G30300" [Arabido 0.984 0.990 0.810 5.1e-145
TAIR|locus:2140695303 AT4G03610 [Arabidopsis thalian 0.898 0.966 0.692 1.6e-111
TAIR|locus:2087974361 AT3G13800 "AT3G13800" [Arabido 0.690 0.623 0.432 8.4e-42
POMBASE|SPCC777.06c301 SPCC777.06c "hydrolase (predic 0.849 0.920 0.344 3e-37
TIGR_CMR|GSU_2465251 GSU_2465 "metallo-beta-lactama 0.481 0.625 0.315 1.2e-09
TIGR_CMR|NSE_0580264 NSE_0580 "metallo-beta-lactama 0.604 0.746 0.25 2.4e-05
TIGR_CMR|ECH_0985263 ECH_0985 "metallo-beta-lactama 0.693 0.859 0.225 4.1e-05
UNIPROTKB|Q5LPV6266 SPO2743 "Uncharacterized prote 0.469 0.575 0.283 5.4e-05
TIGR_CMR|SPO_2743266 SPO_2743 "conserved hypothetic 0.469 0.575 0.283 5.4e-05
TAIR|locus:2009827 AT1G30300 "AT1G30300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1417 (503.9 bits), Expect = 5.1e-145, P = 5.1e-145
 Identities = 261/322 (81%), Positives = 288/322 (89%)

Query:     5 NSILAENGNGAVSEQGRSALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNP 64
             +SI +ENG+   S++ RSALIFLGTGCSSA+PN MCL+Q SD PC VC  +LSIPP  NP
Sbjct:     4 SSIPSENGS-VTSDRDRSALIFLGTGCSSAVPNAMCLIQRSDNPCYVCSQSLSIPPEKNP 62

Query:    65 NYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVL 124
             NYR NTSLLID+C+ DGKH YI IDVGKTFREQ+LRWFT HKIP+VDSIILTHEHADAVL
Sbjct:    63 NYRGNTSLLIDYCQSDGKHKYIQIDVGKTFREQVLRWFTLHKIPQVDSIILTHEHADAVL 122

Query:   125 GLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKI 184
             GLDDIR+VQP+S TNDIDPTPIF+SQ+AMES++ KFPYLVQKKLKEGQEVRRVAQLDW++
Sbjct:   123 GLDDIRSVQPFSPTNDIDPTPIFVSQYAMESLAVKFPYLVQKKLKEGQEVRRVAQLDWRV 182

Query:   185 IEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVISKS 244
             IEEDC+KPFVASGL F PLPVMHGEDYVCLGFLFGEK RVAYISDVSR PP TEY ISKS
Sbjct:   183 IEEDCEKPFVASGLSFTPLPVMHGEDYVCLGFLFGEKSRVAYISDVSRFPPNTEYAISKS 242

Query:   245 GAGQLDLLILDTLYKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAE 304
             G GQLDLLILDTLYK G HNTH CFPQTL+ +KRL PK+ALLIGMTHEFDHHKDNEFL E
Sbjct:   243 GGGQLDLLILDTLYKTGSHNTHLCFPQTLDTIKRLSPKRALLIGMTHEFDHHKDNEFLEE 302

Query:   305 WSKREGIPVQLSHDGLRIPIDL 326
             WSKREGI V+L+HDGLR+PIDL
Sbjct:   303 WSKREGISVKLAHDGLRVPIDL 324
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2140695 AT4G03610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087974 AT3G13800 "AT3G13800" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPCC777.06c SPCC777.06c "hydrolase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2465 GSU_2465 "metallo-beta-lactamase family protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0580 NSE_0580 "metallo-beta-lactamase family protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0985 ECH_0985 "metallo-beta-lactamase family protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LPV6 SPO2743 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2743 SPO_2743 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O74545YCV6_SCHPONo assigned EC number0.34370.83740.9069yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query326
PRK02113252 PRK02113, PRK02113, putative hydrolase; Provisiona 1e-34
COG1235269 COG1235, PhnP, Metal-dependent hydrolases of the b 3e-21
pfam12706197 pfam12706, Lactamase_B_2, Beta-lactamase superfami 3e-18
smart00849177 smart00849, Lactamase_B, Metallo-beta-lactamase su 2e-05
pfam00753148 pfam00753, Lactamase_B, Metallo-beta-lactamase sup 5e-05
PRK11244250 PRK11244, phnP, carbon-phosphorus lyase complex ac 8e-05
TIGR03307238 TIGR03307, PhnP, phosphonate metabolism protein Ph 2e-04
COG1234292 COG1234, ElaC, Metal-dependent hydrolases of the b 2e-04
>gnl|CDD|179371 PRK02113, PRK02113, putative hydrolase; Provisional Back     alignment and domain information 
 Score =  126 bits (318), Expect = 1e-34
 Identities = 92/301 (30%), Positives = 146/301 (48%), Gaps = 55/301 (18%)

Query: 24  LIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKH 83
           +  LG+G S+ +P   C        C VC    S  P    + R  TS L+   E +G  
Sbjct: 3   IRILGSGTSTGVPEIGC-------TCPVC---TSKDPR---DNRLRTSALV---ETEGAR 46

Query: 84  SYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDP 143
             ILID G  FREQ+LR        ++D++++THEH D V GLDD+R   P+    ++  
Sbjct: 47  --ILIDCGPDFREQMLR----LPFGKIDAVLITHEHYDHVGGLDDLR---PFCRFGEV-- 95

Query: 144 TPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVPL 203
            PI+  Q+  E + ++ PY   +    G         +  + E + D+PF+ +  +  PL
Sbjct: 96  -PIYAEQYVAERLRSRMPYCFVEHSYPGVP-------NIPLREIEPDRPFLVNHTEVTPL 147

Query: 204 PVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGCH 263
            VMHG+  + LG+  G   ++AYI+D+  + P  EY   +     +D+L+++ L     H
Sbjct: 148 RVMHGKLPI-LGYRIG---KMAYITDMLTM-PEEEYEQLQG----IDVLVMNALRI-APH 197

Query: 264 NTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIP--VQLSHDGLR 321
            TH    + LE +KR+  K+  LI M+H    H D E        + +P  V  ++DGL 
Sbjct: 198 PTHQSLEEALENIKRIGAKETYLIHMSHHIGLHADVE--------KELPPHVHFAYDGLE 249

Query: 322 I 322
           I
Sbjct: 250 I 250

Length = 252
>gnl|CDD|224156 COG1235, PhnP, Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>gnl|CDD|221727 pfam12706, Lactamase_B_2, Beta-lactamase superfamily domain Back     alignment and domain information
>gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information
>gnl|CDD|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily Back     alignment and domain information
>gnl|CDD|183052 PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>gnl|CDD|163212 TIGR03307, PhnP, phosphonate metabolism protein PhnP Back     alignment and domain information
>gnl|CDD|224155 COG1234, ElaC, Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 326
PRK02113252 putative hydrolase; Provisional 100.0
PRK05184302 pyrroloquinoline quinone biosynthesis protein PqqB 100.0
PRK11244250 phnP carbon-phosphorus lyase complex accessory pro 100.0
TIGR02108302 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. 100.0
TIGR02649303 true_RNase_BN ribonuclease BN. Members of this pro 100.0
TIGR02651299 RNase_Z ribonuclease Z. Processing of the 3-prime 100.0
COG1234292 ElaC Metal-dependent hydrolases of the beta-lactam 100.0
TIGR03307238 PhnP phosphonate metabolism protein PhnP. This fam 100.0
PRK00055270 ribonuclease Z; Reviewed 100.0
PRK02126334 ribonuclease Z; Provisional 99.98
KOG2121746 consensus Predicted metal-dependent hydrolase (bet 99.97
PRK00685228 metal-dependent hydrolase; Provisional 99.96
COG1235269 PhnP Metal-dependent hydrolases of the beta-lactam 99.95
PRK04286298 hypothetical protein; Provisional 99.95
TIGR02650277 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Me 99.95
PF12706194 Lactamase_B_2: Beta-lactamase superfamily domain; 99.94
TIGR00649 422 MG423 conserved hypothetical protein. Contains an 99.91
PRK11709355 putative L-ascorbate 6-phosphate lactonase; Provis 99.87
TIGR03675 630 arCOG00543 arCOG00543 universal archaeal KH-domain 99.85
COG1782 637 Predicted metal-dependent RNase, consists of a met 99.79
COG0595 555 mRNA degradation ribonucleases J1/J2 (metallo-beta 99.76
smart00849183 Lactamase_B Metallo-beta-lactamase superfamily. Ap 99.75
PF02112335 PDEase_II: cAMP phosphodiesterases class-II; Inter 99.73
COG1236 427 YSH1 Predicted exonuclease of the beta-lactamase f 99.72
PF13483163 Lactamase_B_3: Beta-lactamase superfamily domain; 99.68
COG2220258 Predicted Zn-dependent hydrolases of the beta-lact 99.64
KOG1136 501 consensus Predicted cleavage and polyadenylation s 99.58
TIGR03413248 GSH_gloB hydroxyacylglutathione hydrolase. Members 99.57
PRK11921 394 metallo-beta-lactamase/flavodoxin domain-containin 99.54
COG2248304 Predicted hydrolase (metallo-beta-lactamase superf 99.51
KOG1137 668 consensus mRNA cleavage and polyadenylation factor 99.49
TIGR00361662 ComEC_Rec2 DNA internalization-related competence 99.47
PRK10241251 hydroxyacylglutathione hydrolase; Provisional 99.47
COG1237259 Metal-dependent hydrolases of the beta-lactamase s 99.43
PF00753194 Lactamase_B: Metallo-beta-lactamase superfamily; I 99.41
PLN02469258 hydroxyacylglutathione hydrolase 99.41
PRK05452 479 anaerobic nitric oxide reductase flavorubredoxin; 99.4
PLN02398329 hydroxyacylglutathione hydrolase 99.4
PRK11539755 ComEC family competence protein; Provisional 99.4
COG2333293 ComEC Predicted hydrolase (metallo-beta-lactamase 99.35
COG5212356 PDE1 Low-affinity cAMP phosphodiesterase [Signal t 99.34
PLN02962251 hydroxyacylglutathione hydrolase 99.34
COG0491252 GloB Zn-dependent hydrolases, including glyoxylase 99.27
COG0426 388 FpaA Uncharacterized flavoproteins [Energy product 99.23
KOG0813265 consensus Glyoxylase [General function prediction 99.12
KOG3798343 consensus Predicted Zn-dependent hydrolase (beta-l 98.99
KOG1361 481 consensus Predicted hydrolase involved in interstr 98.98
KOG1135 764 consensus mRNA cleavage and polyadenylation factor 98.89
KOG0814237 consensus Glyoxylase [General function prediction 98.27
PF1369163 Lactamase_B_4: tRNase Z endonuclease 98.19
PF14597199 Lactamase_B_5: Metallo-beta-lactamase superfamily; 97.65
COG2015 655 Alkyl sulfatase and related hydrolases [Secondary 97.06
KOG1138 653 consensus Predicted cleavage and polyadenylation s 95.4
KOG4736302 consensus Uncharacterized conserved protein [Funct 95.38
KOG3592 934 consensus Microtubule-associated proteins [Cytoske 90.54
KOG2121 746 consensus Predicted metal-dependent hydrolase (bet 90.33
PF0752143 RMMBL: RNA-metabolising metallo-beta-lactamase; In 89.99
>PRK02113 putative hydrolase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.3e-48  Score=340.08  Aligned_cols=252  Identities=34%  Similarity=0.599  Sum_probs=207.9

Q ss_pred             eEEEEEeecCCCCcCCccccCCCCCCCCcccCCCCCCCCCCCCCcccccEEEEEeccCCCCccEEEEecCccHHHHHHHh
Q 020397           22 SALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRW  101 (326)
Q Consensus        22 m~l~~LGtg~s~g~P~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~  101 (326)
                      ||++|||||+++|+|.++|.       |++|.++|    +++  .|.++|++|+.     ++..+|||||+++..++.+.
T Consensus         1 m~~~~lGtg~~~g~P~~~c~-------c~~C~~~~----~~~--~R~~~s~li~~-----~~~~iLiD~G~g~~~~l~~~   62 (252)
T PRK02113          1 MKIRILGSGTSTGVPEIGCT-------CPVCTSKD----PRD--NRLRTSALVET-----EGARILIDCGPDFREQMLRL   62 (252)
T ss_pred             CEEEEEEeCCCCCeecCCCC-------CccCCCCC----CCC--cceeeEEEEEE-----CCeEEEEECCchHHHHHHhc
Confidence            89999999999999999998       99999985    233  89999999997     77899999999998887763


Q ss_pred             hhcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHhCCcccccccccCccccccccce
Q 020397          102 FTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLD  181 (326)
Q Consensus       102 ~~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~  181 (326)
                          .+.++++|||||.|.||++|++.++...      +..+++||+|+.+.+.+...+.+.+.+...++     .+.++
T Consensus        63 ----~~~~id~I~lTH~H~DH~~gl~~l~~~~------~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~  127 (252)
T PRK02113         63 ----PFGKIDAVLITHEHYDHVGGLDDLRPFC------RFGEVPIYAEQYVAERLRSRMPYCFVEHSYPG-----VPNIP  127 (252)
T ss_pred             ----CccccCEEEECCCChhhhCCHHHHHHhc------cCCCceEEECHHHHHHHHhhCCeeeccCCCCC-----Cccee
Confidence                6789999999999999999999886542      24689999999999888776655443322221     22356


Q ss_pred             eeEeccCCCCceEECCEEEEEEEeeeCCCceeEEEEEcCceeEEEeCCCCCCChhhHHHhhcCCCCCCcEEEEcCccCCC
Q 020397          182 WKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDG  261 (326)
Q Consensus       182 ~~~i~~~~~~~~~~~~~~v~~~~~~H~~~~~~~g~~i~~~~~i~ysgDt~~~~~~~~~~l~~~~~~~~Dlli~e~~~~~~  261 (326)
                      ++.+++  ++.+.+++++|+++++.|+. .+++||++.   +++|+||+.+.++..++++++     +|+||+|+++. .
T Consensus       128 ~~~~~~--g~~~~~~~~~i~~~~~~H~~-~~~~gy~i~---~i~y~~Dt~~~~~~~~~~~~~-----~DlLi~e~~~~-~  195 (252)
T PRK02113        128 LREIEP--DRPFLVNHTEVTPLRVMHGK-LPILGYRIG---KMAYITDMLTMPEEEYEQLQG-----IDVLVMNALRI-A  195 (252)
T ss_pred             eEEcCC--CCCEEECCeEEEEEEecCCC-ccEEEEEeC---CEEEccCCCCCCHHHHHHhcC-----CCEEEEhhhcC-C
Confidence            788888  89999999999999999974 379999994   899999999877888888888     99999999874 3


Q ss_pred             CCCCCCCHHHHHHHHHHcCCCeEEEEeeccccCchhhhHHhHhhhhcCCCCeEEeecceEEee
Q 020397          262 CHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIPVQLSHDGLRIPI  324 (326)
Q Consensus       262 ~~~~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~~~~~~~~l~~~~~~~~~~v~~a~Dg~~i~l  324 (326)
                      ..++|+++++++++++++++|++++||+++.+...   +++   .+.+..++.+|+|||++++
T Consensus       196 ~~~~H~t~~~a~~~~~~~~~k~l~l~H~s~~~~~~---~~~---~~~~~~~~~~A~Dg~~~~~  252 (252)
T PRK02113        196 PHPTHQSLEEALENIKRIGAKETYLIHMSHHIGLH---ADV---EKELPPHVHFAYDGLEIIF  252 (252)
T ss_pred             CCCCcCCHHHHHHHHHHhCCCEEEEEcccccchhH---HHH---HHhCCCCceeccCceEEeC
Confidence            57789999999999999999999999999876421   111   2223447899999999874

>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional Back     alignment and domain information
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional Back     alignment and domain information
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B Back     alignment and domain information
>TIGR02649 true_RNase_BN ribonuclease BN Back     alignment and domain information
>TIGR02651 RNase_Z ribonuclease Z Back     alignment and domain information
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only] Back     alignment and domain information
>TIGR03307 PhnP phosphonate metabolism protein PhnP Back     alignment and domain information
>PRK00055 ribonuclease Z; Reviewed Back     alignment and domain information
>PRK02126 ribonuclease Z; Provisional Back     alignment and domain information
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PRK00685 metal-dependent hydrolase; Provisional Back     alignment and domain information
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only] Back     alignment and domain information
>PRK04286 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type Back     alignment and domain information
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A Back     alignment and domain information
>TIGR00649 MG423 conserved hypothetical protein Back     alignment and domain information
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional Back     alignment and domain information
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein Back     alignment and domain information
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair] Back     alignment and domain information
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily Back     alignment and domain information
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3 Back     alignment and domain information
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A Back     alignment and domain information
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only] Back     alignment and domain information
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional Back     alignment and domain information
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2 Back     alignment and domain information
>PRK10241 hydroxyacylglutathione hydrolase; Provisional Back     alignment and domain information
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only] Back     alignment and domain information
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain [] Back     alignment and domain information
>PLN02469 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional Back     alignment and domain information
>PLN02398 hydroxyacylglutathione hydrolase Back     alignment and domain information
>PRK11539 ComEC family competence protein; Provisional Back     alignment and domain information
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms] Back     alignment and domain information
>PLN02962 hydroxyacylglutathione hydrolase Back     alignment and domain information
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only] Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>KOG0813 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair] Back     alignment and domain information
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG0814 consensus Glyoxylase [General function prediction only] Back     alignment and domain information
>PF13691 Lactamase_B_4: tRNase Z endonuclease Back     alignment and domain information
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B Back     alignment and domain information
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification] Back     alignment and domain information
>KOG4736 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton] Back     alignment and domain information
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only] Back     alignment and domain information
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query326
3md7_A293 Crystal Structure Of A Beta-Lactamase-Like Protein 2e-13
3py6_A274 Crystal Structure Of A Beta-Lactamase-Like Protein 2e-13
>pdb|3MD7|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein Bound To Gmp From Brucella Melitensis Length = 293 Back     alignment and structure 
Iteration: 1

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 34/266 (12%)
Query: 63  NP-NYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHAD 121
           NP N R   SLL++  + +G ++ ++ID G  FR Q++       +  +D+ + TH HAD
Sbjct: 56  NPKNRRRRASLLVERYDAEGNNTVVVIDTGPDFRMQMID----SGVHMLDAAVYTHPHAD 111
Query: 122 AVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLD 181
            + G+DD+R        ++     ++ ++     +   F Y  +  +  G     +  + 
Sbjct: 112 HIHGIDDLRTY----VVDNGRLMDVYANRLTRNRLYDTFGYCFETPV--GSSYPPILSMH 165
Query: 182 WKIIEEDCDKPFVASGLKFVPLPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVI 241
               E           ++F P   +HG D   LGF  G    V Y +DVS  P  +   I
Sbjct: 166 DIAPETPFSIEGAGGAIRFEPFSQVHG-DIESLGFRIGS---VVYCTDVSAFPEQSLQYI 221
Query: 242 SKSGAGQLDLLILDTL-YKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNE 300
             +     D+LI+  L Y+   H +HF   + LE +++L PK+A+L  M    D+     
Sbjct: 222 KDA-----DVLIIGALQYRP--HPSHFSLGEALEWIEKLSPKRAILTHMHVPLDY----- 269
Query: 301 FLAEWSKREGIP--VQLSHDGLRIPI 324
              E   RE  P  V+  +DGLR  +
Sbjct: 270 ---ETVMRE-TPHHVEPGYDGLRFEV 291
>pdb|3PY6|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein From Brucella Melitensis Bound To Gmp Length = 274 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query326
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 1e-75
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 1e-58
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 7e-29
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 5e-13
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 6e-05
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 1e-04
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 8e-04
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Length = 293 Back     alignment and structure
 Score =  233 bits (595), Expect = 1e-75
 Identities = 71/304 (23%), Positives = 119/304 (39%), Gaps = 42/304 (13%)

Query: 24  LIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNP-NYRCNTSLLIDHCEGDGK 82
              LG G S  +P               C P        NP N R   SLL++  + +G 
Sbjct: 31  FTLLGCGSSPGVPRING-------DWGKCDPK-------NPKNRRRRASLLVERYDAEGN 76

Query: 83  HSYILIDVGKTFREQILRWFTFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDID 142
           ++ ++ID G  FR Q++       +  +D+ + TH HAD + G+DD+R        ++  
Sbjct: 77  NTVVVIDTGPDFRMQMID----SGVHMLDAAVYTHPHADHIHGIDDLRTYVV----DNGR 128

Query: 143 PTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGLKFVP 202
              ++ ++     +   F Y  +  +        +  +     E           ++F P
Sbjct: 129 LMDVYANRLTRNRLYDTFGYCFETPVGSSY--PPILSMHDIAPETPFSIEGAGGAIRFEP 186

Query: 203 LPVMHGEDYVCLGFLFGEKCRVAYISDVSRIPPTTEYVISKSGAGQLDLLILDTLYKDGC 262
              +HG D   LGF  G    V Y +DVS  P  +   I        D+LI+  L     
Sbjct: 187 FSQVHG-DIESLGFRIG---SVVYCTDVSAFPEQSLQYIKD-----ADVLIIGALQYRP- 236

Query: 263 HNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHKDNEFLAEWSKREGIPVQLSHDGLRI 322
           H +HF   + LE +++L PK+A+L  M    D+                 V+  +DGLR 
Sbjct: 237 HPSHFSLGEALEWIEKLSPKRAILTHMHVPLDYETVMRETPH-------HVEPGYDGLRF 289

Query: 323 PIDL 326
            + +
Sbjct: 290 EVAV 293
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Length = 258 Back     alignment and structure
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} PDB: 1xto_A Length = 321 Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Length = 268 Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Length = 306 Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Length = 320 Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Length = 210 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Length = 265 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query326
3jxp_A321 Coenzyme PQQ synthesis protein B; alpha-beta prote 100.0
3md7_A293 Beta-lactamase-like; ssgcid, hydrolase, structural 100.0
3g1p_A258 Protein PHNP; C-P lyase, phosphodiesterase, phosph 100.0
2cbn_A306 Ribonuclease Z; phosphodiesterase beta lactamase t 100.0
3zwf_A368 Zinc phosphodiesterase ELAC protein 1; beta-lactam 100.0
1y44_A320 Ribonuclease Z; zinc-dependent metal hydrolase, hy 100.0
1zkp_A268 Hypothetical protein BA1088; zinc binding protein, 100.0
2e7y_A280 TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, 99.97
3rpc_A264 Possible metal-dependent hydrolase; structural gen 99.95
2az4_A 429 Hypothetical protein EF2904; structural genomics, 99.95
3kl7_A235 Putative metal-dependent hydrolase; structural gen 99.94
2wyl_A360 L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 99.94
3bv6_A379 Metal-dependent hydrolase; metallo protein, beta-l 99.94
3bk2_A 562 RNAse J, metal dependent hydrolase; endoribonuclea 99.92
3iek_A 431 Ribonuclease TTHA0252; metallo beta lactamase fold 99.91
3zq4_A 555 Ribonuclease J 1, RNAse J1; hydrolase, RNA maturat 99.9
1vjn_A220 Zn-dependent hydrolase of metallo-beta-lactamase s 99.89
3af5_A 651 Putative uncharacterized protein PH1404; archaeal 99.89
2i7t_A 459 Cleavage and polyadenylation specificity factor 73 99.88
2ycb_A 636 Beta-CAsp RNAse, cleavage and polyadenylation spec 99.88
2i7x_A 717 Protein CFT2; polyadenylation, metallo-B-lactamase 99.87
2xr1_A 640 Cleavage and polyadenylation specificity factor 1 99.86
2p4z_A284 Metal-dependent hydrolases of the beta-lactamase s 99.86
4b87_A 367 DNA cross-LINK repair 1A protein; dclre1A, DCLRE, 99.84
3zdk_A 336 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A 99.76
2bib_A 547 CBPE, teichoic acid phosphorylcholine esterase/ ch 99.73
3dha_A254 N-acyl homoserine lactone hydrolase; zinc bimetall 99.72
3aj3_A274 MLR6805 protein, 4-pyridoxolactonase; Zn-protein, 99.7
2r2d_A276 AGR_PTI_140P, Zn-dependent hydrolases; lactonase, 99.7
3adr_A261 Putative uncharacterized protein ST1585; quorum se 99.7
1ztc_A221 Hypothetical protein TM0894; structural genomics, 99.69
3m8t_A294 'BLR6230 protein; subclass B3 beta-lactamase, zinc 99.67
1k07_A263 FEZ-1 beta-lactamase; monomer with alpha-beta/BETA 99.65
2xf4_A210 Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A 99.64
1e5d_A 402 Rubredoxin\:oxygen oxidoreductase; oxygenreductase 99.64
2ohh_A 404 Type A flavoprotein FPRA; beta-lactamase like doma 99.64
1ycg_A 398 Nitric oxide reductase; DIIRON site, oxidoreductas 99.63
2gcu_A245 Putative hydroxyacylglutathione hydrolase 3; ethyl 99.63
3l6n_A219 Metallo-beta-lactamase; zinc, hydolase, antibiotic 99.61
1sml_A269 Protein (penicillinase); metallo-beta-lactamase, a 99.61
1p9e_A331 Methyl parathion hydrolase; Zn containing; 2.40A { 99.61
2zwr_A207 Metallo-beta-lactamase superfamily protein; hydrol 99.6
4efz_A298 Metallo-beta-lactamase family protein; structural 99.59
4ax1_B303 Metallo-beta-lactamase AIM-1; hydrolase, antibioti 99.57
3hnn_A262 Putative diflavin flavoprotein A 5; PSI-2, protein 99.57
2qed_A258 Hydroxyacylglutathione hydrolase; metallo-B- super 99.55
3tp9_A 474 Beta-lactamase and rhodanese domain protein; struc 99.55
2q9u_A 414 A-type flavoprotein; flavodoxin like, beta lactama 99.54
1qh5_A260 Glyoxalase II, protein (hydroxyacylglutathione hyd 99.54
2vw8_A303 PA1000, PQSE; quinolone signal response protein, s 99.53
1m2x_A223 Class B carbapenemase BLAB-1; alpha-beta/BETA-alph 99.53
1a7t_A232 Metallo-beta-lactamase; hydrolase (beta-lactamase) 99.53
4hl2_A243 Beta-lactamase NDM-1; structural genomics, PSI-bio 99.52
2zo4_A317 Metallo-beta-lactamase family protein; hydrolase; 99.52
3esh_A280 Protein similar to metal-dependent hydrolase; stru 99.51
1mqo_A227 Beta-lactamase II; alpha-beta/BETA-alpha fold, hyd 99.51
4ad9_A289 Lactb2, beta-lactamase-like protein 2; hydrolase, 99.48
1xm8_A254 Glyoxalase II; structural genomics, protein struct 99.48
4dik_A 410 Flavoprotein; TM0755, electron transport, DI-iron 99.48
2p18_A311 Glyoxalase II; metalloprotein, beta sandwich, alph 99.47
3q6v_A233 Beta-lactamase; metalloenzyme, alpha-beta, hydrola 99.46
3r2u_A 466 Metallo-beta-lactamase family protein; structural 99.45
1jjt_A228 IMP-1 metallo beta-lactamase; metallo-beta-lactama 99.45
3iog_A227 Beta-lactamase; hydrolase, antibiotic resistance, 99.43
2y8b_A265 Metallo-B-lactamase; hydrolase, cephalosporins, an 99.43
2fhx_A246 SPM-1; metallo-beta-lactamase, dinuclear zinc, ant 99.42
3h3e_A267 Uncharacterized protein TM1679; structural genomic 99.4
4eyb_A270 Beta-lactamase NDM-1; metallo beta lactamase, anti 99.32
2p97_A201 Hypothetical protein; putative metal-dependent hyd 99.19
2cfu_A 658 SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1 99.16
2yhe_A 668 SEC-alkyl sulfatase; hydrolase, inversion, metallo 98.41
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida} SCOP: d.157.1.6 PDB: 1xto_A Back     alignment and structure
Probab=100.00  E-value=5.1e-50  Score=361.74  Aligned_cols=264  Identities=21%  Similarity=0.321  Sum_probs=209.5

Q ss_pred             CceEEEEEeecCCCCcCCccccCCCCCCCCcccCCCCCCCCCC-CCCcccccEEEEEeccCCCCcc-EEEEecCccHHHH
Q 020397           20 GRSALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNL-NPNYRCNTSLLIDHCEGDGKHS-YILIDVGKTFREQ   97 (326)
Q Consensus        20 ~~m~l~~LGtg~s~g~P~~~~~~~~~~~~c~~c~~~~~~~~~~-~~~~r~~ss~li~~~~~~~~~~-~iLiD~G~~~~~~   97 (326)
                      |||||+|||||+|+|+|.++|.       |.+|.+||+.+ ++ +  .|+++|++|+.     ++. .+|||||++++.+
T Consensus         1 ~~M~~~~LGtg~s~G~P~~~C~-------C~~C~~a~~~~-~~~~--~R~~ss~li~~-----~~~~~iLiD~G~~~~~~   65 (321)
T 3jxp_A            1 MMMYIQVLGSAAGGGFPQWNCN-------CVNCKGYRDGT-LKAT--ARTQSSIALSD-----DGVHWILCNASPDIRAQ   65 (321)
T ss_dssp             -CEEEEEEECBCTTTBTTTTCC-------SHHHHHHHHTC-SCCC--CBCBCEEEEES-----SSSSEEEECCCTTHHHH
T ss_pred             CeEEEEEEEeCCCCCCCcCCcC-------CccchhhhhCC-CCCC--cccceEEEEEe-----CCceEEEEeCCchHHHH
Confidence            6899999999999999999999       99999998753 23 4  89999999996     555 4999999999888


Q ss_pred             HHHhhh-----cCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHhCCcccccccccCc
Q 020397           98 ILRWFT-----FHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQ  172 (326)
Q Consensus        98 l~~~~~-----~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~~~~~~~~~~~~g~  172 (326)
                      +.+...     +.++.+|++|||||.|.||++|++.|+.         ..+++||+++.+.+.++..+. .+.. ...  
T Consensus        66 l~~~~~l~~~~~~~~~~i~~i~lTH~H~DH~~gl~~l~~---------~~~~~vy~~~~~~~~l~~~~~-~f~~-~~~--  132 (321)
T 3jxp_A           66 LQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLRE---------GCPHQVWCTDMVHQDLTTGFP-LFNM-LSH--  132 (321)
T ss_dssp             HHTCGGGCCCSSSSCCSEEEEECSCCCHHHHGGGGGGGG---------GCCEEEEECHHHHHHTTTTSC-HHHH-HTT--
T ss_pred             HHhcccccccccCCcccCCEEEECCCChhhhhhHHHHHh---------cCCCeEEECHHHHHHHHhhCc-cccc-ccc--
Confidence            876421     1367899999999999999999999964         248999999999887765442 2210 000  


Q ss_pred             cccccccceeeEeccCCCCceEE---CCEEEEEEEee--------eCCC---ceeEEEEEc--Cc-eeEEEeCCCCCCCh
Q 020397          173 EVRRVAQLDWKIIEEDCDKPFVA---SGLKFVPLPVM--------HGED---YVCLGFLFG--EK-CRVAYISDVSRIPP  235 (326)
Q Consensus       173 ~~~~~~~~~~~~i~~~~~~~~~~---~~~~v~~~~~~--------H~~~---~~~~g~~i~--~~-~~i~ysgDt~~~~~  235 (326)
                         ..+.++++.+++  ++++.+   ++++|+++++.        |+..   .+++||+|+  .+ ++++|+|||+++++
T Consensus       133 ---~~~~i~~~~i~~--g~~~~i~~~~~~~V~~~~v~H~~~~~~~H~~~~~~~~~~Gy~i~~~~~g~~i~y~~Dt~~~~~  207 (321)
T 3jxp_A          133 ---WNGGLQWNRIEL--EGSFVIDACPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDE  207 (321)
T ss_dssp             ---TTTCEEEEECCS--SSCEECTTSTTEEEEEEEECCCCCTTCTTTTSCCTTSEEEEEEEETTTCCEEEEESSCCCCCH
T ss_pred             ---ccCceeEEEcCC--CCeEEeccCCCeEEEEEEecCCccccccccccccCCCcEEEEEEecCCCcEEEEECCCCCCCH
Confidence               012256788888  899999   99999999998        5431   379999998  66 89999999998888


Q ss_pred             hhHHHhhcCCCCCCcEEEEcCccCCC-------------CCCCCCCHH---HHHHHHHHcCCCeEEEEeeccccCchh-h
Q 020397          236 TTEYVISKSGAGQLDLLILDTLYKDG-------------CHNTHFCFP---QTLEAVKRLCPKQALLIGMTHEFDHHK-D  298 (326)
Q Consensus       236 ~~~~~l~~~~~~~~Dlli~e~~~~~~-------------~~~~H~~~~---~a~~~~~~~~~k~lvl~H~~~~~~~~~-~  298 (326)
                      ++++++++     +|+||+||++...             ..++|++.+   +|+++++++++|++||||+++.++... .
T Consensus       208 ~~~~~~~~-----~D~li~eat~~~d~e~~~~glk~r~~~~~gH~s~~~~~eA~~~a~~~~~k~lvLtH~s~~np~l~~~  282 (321)
T 3jxp_A          208 KLLAMMHG-----ADCLLVDGTLWEDDEMQRRGVGTRTGREMGHLAQNGPGGTLEVLDGFPRQRKVLIHINNTNPILDEN  282 (321)
T ss_dssp             HHHHHHHH-----CSEEEEECCCSSTTHHHHHTSCSCCCC-CCCCCSSSTTCHHHHHTTCSSSEEEEESBCTTCGGGSTT
T ss_pred             HHHHHhcC-----CCEEEEeCCCCCcHHHhhccccccccCCCcccCCCCHHHHHHHHHhCCCCeEEEEEeCCCCcccccc
Confidence            99999999     9999999987652             356899999   999999999999999999999875211 1


Q ss_pred             hHHhHhhhhcCCCCeEEeecceEEee
Q 020397          299 NEFLAEWSKREGIPVQLSHDGLRIPI  324 (326)
Q Consensus       299 ~~~l~~~~~~~~~~v~~a~Dg~~i~l  324 (326)
                      .++..+.   ...++++|+|||+|++
T Consensus       283 ~~e~~~~---~~~~v~~A~DGm~i~~  305 (321)
T 3jxp_A          283 SPERAEV---LRRGVEVAFDGMSIEL  305 (321)
T ss_dssp             CHHHHHH---HHTTEEECCTTCEEEE
T ss_pred             hHHHHHh---hcCCcEEecCCcEEEe
Confidence            1122221   2348999999999986
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB: 3qh8_A* 3py6_A* 3py5_A* Back     alignment and structure
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} PDB: 3p2u_A Back     alignment and structure
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Back     alignment and structure
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase, metal-binding, tRNA processing, zinc-binding, catabolism; 1.70A {Homo sapiens} Back     alignment and structure
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Back     alignment and structure
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Back     alignment and structure
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Back     alignment and structure
>3rpc_A Possible metal-dependent hydrolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.49A {Veillonella parvula} Back     alignment and structure
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Enterococcus faecalis} SCOP: d.157.1.10 Back     alignment and structure
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Back     alignment and structure
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Back     alignment and structure
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural PSI-2, protein structure initiative; 1.80A {Vibrio cholerae o1 biovar eltor} Back     alignment and structure
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A* 3t3n_A* Back     alignment and structure
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A* Back     alignment and structure
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A {Bacillus subtilis} Back     alignment and structure
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; metallo-hydrolase/oxidoreductase fold, structural genomics; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Back     alignment and structure
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Back     alignment and structure
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Back     alignment and structure
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Back     alignment and structure
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Back     alignment and structure
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; metal-dependent hydrolases of the beta-lactamase superfamily hydrolase; 2.10A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>4b87_A DNA cross-LINK repair 1A protein; dclre1A, DCLRE, interstrand crosslink repair, hydrolase, NIT mustard, cancer, chemotherapy, PSO2 homolog,; HET: DNA; 2.16A {Homo sapiens} Back     alignment and structure
>3zdk_A 5' exonuclease apollo; hydrolase; HET: TLA; 2.16A {Homo sapiens} Back     alignment and structure
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein; choline-binding protein, PCE, phosphorylcholine estera hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Back     alignment and structure
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovar kurstakorganism_taxid} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Back     alignment and structure
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein, metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium loti} PDB: 3aj0_A Back     alignment and structure
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Back     alignment and structure
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Back     alignment and structure
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Back     alignment and structure
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme, sulfonamide complex hydrolase-hydrolase inhibitor complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB: 3lvz_A* 2gmn_A Back     alignment and structure
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Back     alignment and structure
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Back     alignment and structure
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Back     alignment and structure
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A* Back     alignment and structure
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Back     alignment and structure
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Back     alignment and structure
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} SCOP: d.157.1.0 Back     alignment and structure
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Back     alignment and structure
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Back     alignment and structure
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Back     alignment and structure
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance, acquired B3, drug binding; 1.40A {Pseudomonas aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B Back     alignment and structure
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily, salmonella typhimurium LT2; 1.45A {Salmonella typhimurium} SCOP: d.157.1.2 Back     alignment and structure
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Back     alignment and structure
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Back     alignment and structure
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Back     alignment and structure
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Back     alignment and structure
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Back     alignment and structure
>4hl2_A Beta-lactamase NDM-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ZZ7; 1.05A {Klebsiella pneumoniae} PDB: 4hl1_A* 4h0d_A* 4gyu_A* 4gyq_A 3q6x_A* 3spu_A 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus} Back     alignment and structure
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Back     alignment and structure
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 3kns_A 3knr_A 2bfz_A ... Back     alignment and structure
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens} Back     alignment and structure
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Back     alignment and structure
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A* Back     alignment and structure
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Back     alignment and structure
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A {Serratia fonticola} PDB: 3sd9_A Back     alignment and structure
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Back     alignment and structure
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, I metallo-beta-lactamase, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Back     alignment and structure
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding; HET: SDF; 1.41A {Aeromonas hydrophila} SCOP: d.157.1.1 PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A 3t9m_A 3sw3_A Back     alignment and structure
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A 2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A Back     alignment and structure
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Back     alignment and structure
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Back     alignment and structure
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic, hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A* 3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A 3zr9_A 3s0z_A 3pg4_A Back     alignment and structure
>2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Back     alignment and structure
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Back     alignment and structure
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 326
d1xtoa_304 d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, P 9e-24
d1zkpa1244 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (B 4e-09
d1y44a1307 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Baci 1e-08
d2cbna1305 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Esch 2e-07
d2e7ya1280 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Ther 2e-05
d2dkfa1 431 d.157.1.10 (A:1-431) Putative RNA-degradation prot 3e-04
d1wraa1305 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholi 0.001
d2i7ta1 451 d.157.1.10 (A:9-459) Cleavage and polyadenylation 0.001
d2i7xa1 514 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two 0.001
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Length = 304 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Coenzyme PQQ synthesis protein B, PqqB
domain: Coenzyme PQQ synthesis protein B, PqqB
species: Pseudomonas putida [TaxId: 303]

 Score = 96.8 bits (239), Expect = 9e-24
 Identities = 45/331 (13%), Positives = 95/331 (28%), Gaps = 60/331 (18%)

Query: 24  LIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKH 83
           +  LG+      P   C        C  C         L    R  +S+ +     D   
Sbjct: 3   IQVLGSAAGGGFPQWNCN-------CVNCKGYRD--GTLKATARTQSSIALS----DDGV 49

Query: 84  SYILIDVGKTFREQILRWFTFH-----KIPRVDSIILTHEHADAVLGLDDIRAVQPYSAT 138
            +IL +     R Q+  +         +   +++I+L     D   GL  +R        
Sbjct: 50  HWILCNASPDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLR-------- 101

Query: 139 NDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRRVAQLDWKIIEEDCDKPFVASGL 198
            +  P  ++ +    + ++T FP         G           +I  E          L
Sbjct: 102 -EGCPHQVWCTDMVHQDLTTGFPLFNMLSHWNGGLQWN------RIELEGSFVIDACPNL 154

Query: 199 KFVPLPVMHGEDYVCLGFLFGEKC--------------RVAYISDVSRIPPTTEYVISKS 244
           KF P P+                               ++ Y   + ++      ++  +
Sbjct: 155 KFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLAMMHGA 214

Query: 245 GAGQLDLLILDTL-----------YKDGCHNTHFCFPQTLEAVKRLCPKQALLIGMTHEF 293
               +D  + +              ++  H         LE +     ++ +LI + +  
Sbjct: 215 DCLLVDGTLWEDDEMQRRGVGTRTGREMGHLAQNGPGGMLEVLDGFPRQRKVLIHINNTN 274

Query: 294 DHHKDNEFLAEWSKREGIPVQLSHDGLRIPI 324
               +N        R G+  +++ DG+ I +
Sbjct: 275 PILDENSPERAEVLRRGV--EVAFDGMSIEL 303
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Length = 244 Back     information, alignment and structure
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Length = 307 Back     information, alignment and structure
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Length = 305 Back     information, alignment and structure
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Length = 280 Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 Back     information, alignment and structure
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 305 Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query326
d1xtoa_304 Coenzyme PQQ synthesis protein B, PqqB {Pseudomona 100.0
d1y44a1307 Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId 100.0
d2cbna1305 Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 100.0
d1zkpa1244 Hypothetical protein BA1088 (BAS1016) {Bacillus an 100.0
d2e7ya1280 Ribonuclease Z (RNase Z) {Thermotoga maritima [Tax 99.95
d2dkfa1 431 Putative RNA-degradation protein TTHA0252 {Thermus 99.9
d2az4a1183 Hypothetical protein EF2904 {Enterococcus faecalis 99.85
d2i7ta1 451 Cleavage and polyadenylation specificity factor su 99.78
d1vjna_209 Hypothetical protein TM0207 {Thermotoga maritima [ 99.76
d2i7xa1 514 Cleavage factor two protein 2, CFT2 {Baker's yeast 99.75
d1ztca1207 Hypothetical protein TM0894 {Thermotoga maritima [ 99.66
d1k07a_262 Zn metallo-beta-lactamase {Fluoribacter gormanii, 99.59
d2aioa1266 Zn metallo-beta-lactamase {Xanthomonas maltophilia 99.56
d1wraa1305 Teichoic acid phosphorylcholine esterase Pce (LytD 99.56
d1ycga2249 Nitric oxide reductase N-terminal domain {Moorella 99.48
d2gmna1264 Zn metallo-beta-lactamase {Bradyrhizobium japonicu 99.47
d1p9ea_294 Methyl parathion hydrolase {Pseudomonas sp. WBC-3 99.46
d1e5da2249 Rubredoxin oxygen:oxidoreductase (ROO), N-terminal 99.46
d1xm8a_254 Glyoxalase II (hydroxyacylglutathione hydrolase) { 99.44
d2qeda1251 Glyoxalase II (hydroxyacylglutathione hydrolase) { 99.4
d2q0ia1298 Quinolone signal response protein PqsE {Pseudomona 99.4
d1qh5a_260 Glyoxalase II (hydroxyacylglutathione hydrolase) { 99.37
d1vmea2250 ROO-like flavoprotein TM0755, N-terminal domain {T 99.35
d1ko3a_230 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 99.33
d1x8ha_228 Zn metallo-beta-lactamase {Aeromonas hydrophila, C 99.32
d1m2xa_219 Zn metallo-beta-lactamase {Chryseobacterium mening 99.27
d1znba_230 Zn metallo-beta-lactamase {Bacteroides fragilis [T 99.26
d1mqoa_221 Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 99.25
d1jjta_220 Zn metallo-beta-lactamase {Pseudomonas aeruginosa, 99.12
d2cfua2 505 Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI 98.9
d2p97a1200 Hypothetical protein Ava3068 {Anabaena variabilis 98.61
d2i7ta1451 Cleavage and polyadenylation specificity factor su 85.68
d2dkfa1431 Putative RNA-degradation protein TTHA0252 {Thermus 80.16
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Coenzyme PQQ synthesis protein B, PqqB
domain: Coenzyme PQQ synthesis protein B, PqqB
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=4.7e-44  Score=317.24  Aligned_cols=264  Identities=19%  Similarity=0.295  Sum_probs=201.8

Q ss_pred             eEEEEEeecCCCCcCCccccCCCCCCCCcccCCCCCCCCCCCCCcccccEEEEEeccCCCCccEEEEecCccHHHHHHHh
Q 020397           22 SALIFLGTGCSSALPNTMCLLQPSDPPCQVCFPALSIPPNLNPNYRCNTSLLIDHCEGDGKHSYILIDVGKTFREQILRW  101 (326)
Q Consensus        22 m~l~~LGtg~s~g~P~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~r~~ss~li~~~~~~~~~~~iLiD~G~~~~~~l~~~  101 (326)
                      |||+|||||+|+|+|.++|.       |.+|..||+.+.+++  +|+++|++|+.    .++..+|||||++++.|+.+.
T Consensus         1 M~~~~LGtg~~~g~P~~~c~-------c~~C~~ar~~~~p~~--~R~~ss~~i~~----~g~~~lLiD~G~~~~~ql~~~   67 (304)
T d1xtoa_           1 MYIQVLGSAAGGGFPQWNCN-------CVNCKGYRDGTLKAT--ARTQSSIALSD----DGVHWILCNASPDIRAQLQAF   67 (304)
T ss_dssp             CEEEEEECBCTTCBSCTTCC-------SHHHHHHHTTCSCCC--CBCBCEEEEES----SSSSEEEESCCTTHHHHHHTC
T ss_pred             CEEEEEEEeCCCCeecCCCC-------CcccchhhcCCCCCC--cceeeEEEEEe----CCCeEEEEeCCchHHHHHHhh
Confidence            89999999999999999999       999999998654554  89999999985    245679999999999999875


Q ss_pred             h-----hcCCCCCccEEEecCCChhhhCChhHHhhcccCCCCCCCCCccEEeCHHHHHHHHHhCCcccccccccCccccc
Q 020397          102 F-----TFHKIPRVDSIILTHEHADAVLGLDDIRAVQPYSATNDIDPTPIFLSQFAMESISTKFPYLVQKKLKEGQEVRR  176 (326)
Q Consensus       102 ~-----~~~~~~~i~~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~iy~~~~~~~~l~~~~~~~~~~~~~~g~~~~~  176 (326)
                      .     .+..+.+|++|||||.|.||+.||+.|++.         ...++|+++.+.......+.+.......       
T Consensus        68 ~~~~~~~~~~~~~i~~I~iTH~H~DH~~GL~~l~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~-------  131 (304)
T d1xtoa_          68 APMQPARALRDTGINAIVLLDSQIDHTTGLLSLREG---------CPHQVWCTDMVHQDLTTGFPLFNMLSHW-------  131 (304)
T ss_dssp             GGGCCCSSSSCCSEEEEECSCCCHHHHGGGGGGGGG---------CCEEEEECHHHHHHTTTTSCHHHHHTTS-------
T ss_pred             hhhhhhcccCCccceEEEEecCCcCeehhHHHHhhh---------ccccccccchhhhhhhhccchhhhcccc-------
Confidence            2     145788999999999999999999998753         4789999999887655444322111100       


Q ss_pred             cccceeeEeccCCCCceE---ECCEEEEEEEeeeCCC-----------ceeEEEEEcCc---eeEEEeCCCCCCChhhHH
Q 020397          177 VAQLDWKIIEEDCDKPFV---ASGLKFVPLPVMHGED-----------YVCLGFLFGEK---CRVAYISDVSRIPPTTEY  239 (326)
Q Consensus       177 ~~~~~~~~i~~~~~~~~~---~~~~~v~~~~~~H~~~-----------~~~~g~~i~~~---~~i~ysgDt~~~~~~~~~  239 (326)
                      .....+..+..  ++.+.   .++++|+++++.|...           ..+++|.+...   ++++|.+|+...++..+.
T Consensus       132 ~~~~~~~~~~~--~~~~~i~~~~~~~i~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (304)
T d1xtoa_         132 NGGLQWNRIEL--EGSFVIDACPNLKFTPFPLRSAAPPYSPHRFDPHPGDNLGLMVEDTRTGGKLFYAPGLGQVDEKLLA  209 (304)
T ss_dssp             TTCEEEEECCS--SSCBCCTTCTTEEEEEEECCCCCCTTSTTTTSCCTTSSEEEEEEETTTCCEEEEESCCSCCCHHHHH
T ss_pred             cCccceeeeec--cCceeeccCCCcEEeeeeeccccccccceeccccccceeeEEEecccccccccccccceeeehhhhh
Confidence            11123333333  33333   4689999999999642           24678888642   789999999988888888


Q ss_pred             HhhcCCCCCCcEEEEcCccCCC----------------CCCCCCCHHHHHHHHHHcCCCeEEEEeeccccCchh-hhHHh
Q 020397          240 VISKSGAGQLDLLILDTLYKDG----------------CHNTHFCFPQTLEAVKRLCPKQALLIGMTHEFDHHK-DNEFL  302 (326)
Q Consensus       240 ~l~~~~~~~~Dlli~e~~~~~~----------------~~~~H~~~~~a~~~~~~~~~k~lvl~H~~~~~~~~~-~~~~l  302 (326)
                      ...+     +|++++++++...                .+..|++++|++++++++++|++|||||+|.++... ..++.
T Consensus       210 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~t~~ea~~~~~~~~~k~lvLtH~sh~~p~~~~~~~~~  284 (304)
T d1xtoa_         210 MMHG-----ADCLLVDGTLWEDDEMQRRGVGTRTGREMGHLAQNGPGGMLEVLDGFPRQRKVLIHINNTNPILDENSPER  284 (304)
T ss_dssp             HHTT-----CSEEEEECCCSSTTHHHHHTSCSCCSSSSSCCCSSSSSSHHHHGGGCCSSEEEEESBCTTCGGGSTTCHHH
T ss_pred             hhhc-----cchhhhhhhhccchhhhccccccchhhccCCCCCCCHHHHHHHHHhCCCCcEEEEecCCCCcccccCHHHH
Confidence            8888     9999999987543                356799999999999999999999999999875321 11122


Q ss_pred             HhhhhcCCCCeEEeecceEEee
Q 020397          303 AEWSKREGIPVQLSHDGLRIPI  324 (326)
Q Consensus       303 ~~~~~~~~~~v~~a~Dg~~i~l  324 (326)
                      .+   ....++.+|+|||+|+|
T Consensus       285 ~~---~~~~gi~vA~DGm~i~L  303 (304)
T d1xtoa_         285 AE---VLRRGVEVAFDGMSIEL  303 (304)
T ss_dssp             HH---HHHTTEEECCTTCEEEC
T ss_pred             HH---HhhCCcEEeeCCCEEEe
Confidence            11   12236999999999986
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Back     information, alignment and structure
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Back     information, alignment and structure
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Back     information, alignment and structure
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Back     information, alignment and structure
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Back     information, alignment and structure
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Back     information, alignment and structure
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Back     information, alignment and structure
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Back     information, alignment and structure
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Back     information, alignment and structure
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Back     information, alignment and structure
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Back     information, alignment and structure
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure