Citrus Sinensis ID: 020421
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 326 | 2.2.26 [Sep-21-2011] | |||||||
| Q8BHK3 | 478 | Proton-coupled amino acid | yes | no | 0.800 | 0.546 | 0.265 | 3e-26 | |
| Q4KL91 | 522 | Proton-coupled amino acid | N/A | no | 0.828 | 0.517 | 0.279 | 7e-26 | |
| Q8K415 | 481 | Proton-coupled amino acid | yes | no | 0.815 | 0.553 | 0.270 | 3e-25 | |
| Q7Z2H8 | 476 | Proton-coupled amino acid | yes | no | 0.889 | 0.609 | 0.254 | 4e-25 | |
| Q8CH36 | 500 | Proton-coupled amino acid | no | no | 0.929 | 0.606 | 0.258 | 1e-24 | |
| Q6YBV0 | 504 | Proton-coupled amino acid | no | no | 0.929 | 0.601 | 0.258 | 5e-24 | |
| Q811P0 | 477 | Proton-coupled amino acid | no | no | 0.846 | 0.578 | 0.269 | 1e-23 | |
| Q495N2 | 470 | Proton-coupled amino acid | no | no | 0.788 | 0.546 | 0.283 | 1e-23 | |
| Q4V8B1 | 477 | Proton-coupled amino acid | no | no | 0.843 | 0.576 | 0.261 | 3e-23 | |
| Q924A5 | 475 | Proton-coupled amino acid | no | no | 0.898 | 0.616 | 0.260 | 9e-23 |
| >sp|Q8BHK3|S36A2_MOUSE Proton-coupled amino acid transporter 2 OS=Mus musculus GN=Slc36a2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/301 (26%), Positives = 143/301 (47%), Gaps = 40/301 (13%)
Query: 36 QTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDT 95
QTL +++ +GTG+LGLP A + AG L G L +++ GL +CM +L++C +
Sbjct: 53 QTLVHLVKGNMGTGILGLPLAVKNAGILMGPLSLLVMGLIACHCMHILVRCAQRFCHR-- 110
Query: 96 SSTETKTYGDLGYKCM--------------GKAGRFLTEFLIFTSQCGGSVAYLVFIGQN 141
K + D G M GR + F + +Q G Y+VF+ N
Sbjct: 111 ---LNKPFMDYGDTVMHGLAFSPNAWLQNHAHWGRRVVSFFLIVTQLGFCCVYIVFLADN 167
Query: 142 LFSIFKSYTSLTY----------------RSFIFLVVPVQILLSWINSLSALAPFSIFAD 185
L + ++ S T R ++ +PV LL ++ +L L FS+ A+
Sbjct: 168 LKQVVEAVNSTTISCHKNETVVLTPTMDSRLYMLSFLPVLGLLVFVRNLRVLTIFSLLAN 227
Query: 186 ICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALES 245
I ++++ ++ + +Q E + + + ++ + P G A+F FE G+ LE+
Sbjct: 228 ISMLVSLVIIAQYIIQ-----EIPDASQLPLVASWKTYPLFFGTAIFSFESIGVVLPLEN 282
Query: 246 SMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQVISY 305
M++ F +L+ + IT +Y+ G G++ +GDD K +TLNLP W +V+++
Sbjct: 283 KMKDARGFPTILSLGMSIITTLYIAIGALGYLRFGDDIKASITLNLPNCWLYQSVKLLYV 342
Query: 306 V 306
V
Sbjct: 343 V 343
|
Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids amino acids such as glycine, alanine and proline. Inhibited by sarcosine. Mus musculus (taxid: 10090) |
| >sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 153/301 (50%), Gaps = 31/301 (10%)
Query: 36 QTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDT 95
QTL +++ +GTG+LGLP A + AG L G + ++ G+ + +CM +L++C L
Sbjct: 91 QTLIHLLKGNIGTGLLGLPLAMKNAGVLLGPISLLFFGIISIHCMNILVRCSHFLCQRYK 150
Query: 96 SST--ETKTYG---DLGYKCMGKA---GRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFK 147
+ + T G ++G + + GR L ++ + +Q G Y VF+ +N+ +F+
Sbjct: 151 KANLGYSDTVGLALEVGPGVLQRHASFGRNLVDWFLVVTQLGFCSVYFVFLAENIKQVFE 210
Query: 148 SYT------------SLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLV 195
+ SL R ++F +P+ I L +I L L+ S FA++ +++ +V
Sbjct: 211 VFLETKLQQSEIGIWSLDLRIYMFSFLPLIIPLVFIRDLKNLSLLSFFANVSMAISLLIV 270
Query: 196 VKEDVQKILGGEFSFSDRKAVS--SNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRF 253
+ ++ + SD + + ++ + P G A+F FEG G+ LE+ MR++ F
Sbjct: 271 YQYVIRNL-------SDPRTLPLGTSWKTYPLFFGTAIFAFEGIGVVLPLENRMRDKKDF 323
Query: 254 SKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKD-WSSIAVQVI-SYVSHVTY 311
SK L +T +Y+ G+ +GD K +TLNLP+D W V+++ S+ +VTY
Sbjct: 324 SKALNIGMAIVTTLYISLATLGYFCFGDQIKGSITLNLPQDSWLYQLVKILYSFGIYVTY 383
Query: 312 C 312
Sbjct: 384 A 384
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Xenopus laevis (taxid: 8355) |
| >sp|Q8K415|S36A2_RAT Proton-coupled amino acid transporter 2 OS=Rattus norvegicus GN=Slc36a2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 140/296 (47%), Gaps = 30/296 (10%)
Query: 36 QTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSE-- 93
QTL +++ +GTG+LGLP A + AG L G L +++ GL +CM +L++C +
Sbjct: 56 QTLVHLVKGNMGTGILGLPLAVKNAGILMGPLSLLVMGLIACHCMHILVRCAQRFCHRLN 115
Query: 94 -------DTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIF 146
DT + + + GR F + +Q G Y+VF+ NL +
Sbjct: 116 KPFMDYGDTVMHGLASSPNTWLQSHAHWGRHAVSFFLIVTQLGFCCVYIVFLADNLKQVV 175
Query: 147 KSYTSLTY----------------RSFIFLVVPVQILLSWINSLSALAPFSIFADICNVL 190
++ S T R ++ +PV LL +I +L L FS+ A++ +
Sbjct: 176 EAVNSTTISCHKNETVVLTPTIDSRLYMLAFLPVLGLLVFIRNLRVLTIFSLLANVS--M 233
Query: 191 AMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRER 250
++LV+ + S + + ++ + P G A+F FE G+ LE+ M++
Sbjct: 234 LVSLVIIGQYIIQGIPDPS---QLPLVASWKTYPLFFGTAIFSFESIGVVLPLENKMKDA 290
Query: 251 GRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQVISYV 306
RF +L+ + IT +Y+ G G++ +GDD K +TLNLP W +V+++ V
Sbjct: 291 RRFPTILSLGMSIITTLYIAIGALGYLRFGDDIKASITLNLPNCWLYQSVKLLYVV 346
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Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids amino acids such as glycine, alanine and proline. Inhibited by sarcosine. Inhibited by L-pipecolic acid, D-pipecolic acid and isonipecotic acid. Rattus norvegicus (taxid: 10116) |
| >sp|Q7Z2H8|S36A1_HUMAN Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/322 (25%), Positives = 150/322 (46%), Gaps = 32/322 (9%)
Query: 9 ENHMSNEIENPLLPKSSGRVTGTASAA--QTLGNIIVSIVGTGVLGLPFAFRVAGWLAGC 66
E S + N P S R + S QTL +++ +GTG+LGLP A + AG + G
Sbjct: 22 EESPSEGLNNLSSPGSYQRFGQSNSTTWFQTLIHLLKGNIGTGLLGLPLAVKNAGIVMGP 81
Query: 67 LGVMIAGLSTYYCMLLLIQCRDKLVSEDTSS----TETKTYGDLGYKC-----MGKAGRF 117
+ ++I G+ +CM +L++C S +T YG C GR
Sbjct: 82 ISLLIIGIVAVHCMGILVKCAHHFCRRLNKSFVDYGDTVMYGLESSPCSWLRNHAHWGRR 141
Query: 118 LTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYT----------------SLTYRSFIFLV 161
+ +F + +Q G Y VF+ N + ++ ++ R ++
Sbjct: 142 VVDFFLIVTQLGFCCVYFVFLADNFKQVIEAANGTTNNCHNNETVILTPTMDSRLYMLSF 201
Query: 162 VPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIR 221
+P +LL +I +L AL+ FS+ A+I ++++ ++ + VQ+I + + +
Sbjct: 202 LPFLVLLVFIRNLRALSIFSLLANITMLVSLVMIYQFIVQRIPD-----PSHLPLVAPWK 256
Query: 222 GLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGD 281
P G A+F FEG GM LE+ M++ +F +L +T++Y+ G G++ +G
Sbjct: 257 TYPLFFGTAIFSFEGIGMVLPLENKMKDPRKFPLILYLGMVIVTILYISLGCLGYLQFGA 316
Query: 282 DTKDIVTLNLPKDWSSIAVQVI 303
+ + +TLNLP W +V+++
Sbjct: 317 NIQGSITLNLPNCWLYQSVKLL 338
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Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid. Homo sapiens (taxid: 9606) |
| >sp|Q8CH36|S36A4_MOUSE Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 161/341 (47%), Gaps = 38/341 (11%)
Query: 4 REEGGENHMSNEIENPLLP-KSSGRVTGTA--SAAQTLGNIIVSIVGTGVLGLPFAFRVA 60
E+ + E E L+P + ++ G S QTL +++ +GTG+LGLP A + A
Sbjct: 25 NEQNFDGSSDEEQEQTLVPIQKHYQLDGQHGISFLQTLVHLLKGNIGTGLLGLPLAIKNA 84
Query: 61 GWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSST----ETKTYGDLG--YKCMGKA 114
G + G + ++ G+ + +CM +L++C L ST +T ++ + C+ +
Sbjct: 85 GIVLGPISLVFIGIISVHCMHILVRCSHFLCQRFKKSTLGYSDTVSFAMEASPWSCLQRQ 144
Query: 115 ---GRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSY-------------------TSL 152
GR + +F + +Q G Y+VF+ +N+ + + + S+
Sbjct: 145 AAWGRQVVDFFLVITQLGFCSVYIVFLAENVKQVHEGFLGSTPIVSNGSDLSHACERRSV 204
Query: 153 TYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFSD 212
R ++ +P+ ILL +I L L S A+I ++ ++ + V+ +
Sbjct: 205 DLRVYMLCFLPLIILLVFIRELKNLFVLSFLANISMAASLVIIYQYVVRNMPD-----PH 259
Query: 213 RKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFG 272
+ + + P G AVF FEG G+ LE+ MRE RF + L +T++Y+
Sbjct: 260 NLPIVAGWKKYPLFFGTAVFAFEGIGVVLPLENQMRESKRFPQALNIGMAIVTVLYISLA 319
Query: 273 FFGFMAYGDDTKDIVTLNLPKD-WSSIAVQVI-SYVSHVTY 311
G+M + D+ K +TLNLP+D W +V+++ S+ VTY
Sbjct: 320 TLGYMCFRDEIKGSITLNLPQDMWLYQSVKILYSFGIFVTY 360
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Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine. Mus musculus (taxid: 10090) |
| >sp|Q6YBV0|S36A4_HUMAN Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 155/341 (45%), Gaps = 38/341 (11%)
Query: 4 REEGGENHMSNEIENPLLPKSSGRVTGTA---SAAQTLGNIIVSIVGTGVLGLPFAFRVA 60
E+ + E E LLP S QTL +++ +GTG+LGLP A + A
Sbjct: 28 NEQNFDGTSDEEHEQELLPVQKHYQLDDQEGISFVQTLMHLLKGNIGTGLLGLPLAIKNA 87
Query: 61 GWLAGCLGVMIAGLSTYYCMLLLIQC------RDKLVSEDTSSTETKTYGDLGYKCMGKA 114
G + G + ++ G+ + +CM +L++C R K + S T + + C+ K
Sbjct: 88 GIVLGPISLVFIGIISVHCMHILVRCSHFLCLRFKKSTLGYSDTVSFAMEVSPWSCLQKQ 147
Query: 115 ---GRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSY-------------------TSL 152
GR + +F + +Q G Y+VF+ +N+ + + + S+
Sbjct: 148 AAWGRSVVDFFLVITQLGFCSVYIVFLAENVKQVHEGFLESKVFISNSTNSSNPCERRSV 207
Query: 153 TYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFSD 212
R ++ +P ILL +I L L S A++ +++ ++ + V+ +
Sbjct: 208 DLRIYMLCFLPFIILLVFIRELKNLFVLSFLANVSMAVSLVIIYQYVVRNMPD-----PH 262
Query: 213 RKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFG 272
+ + + P G AVF FEG G+ LE+ M+E RF + L +T +YV
Sbjct: 263 NLPIVAGWKKYPLFFGTAVFAFEGIGVVLPLENQMKESKRFPQALNIGMGIVTTLYVTLA 322
Query: 273 FFGFMAYGDDTKDIVTLNLPKD-WSSIAVQVI-SYVSHVTY 311
G+M + D+ K +TLNLP+D W +V+++ S+ VTY
Sbjct: 323 TLGYMCFHDEIKGSITLNLPQDVWLYQSVKILYSFGIFVTY 363
|
Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine. Inhibited by sarcosine. Homo sapiens (taxid: 9606) |
| >sp|Q811P0|S36A3_MOUSE Proton-coupled amino acid transporter 3 OS=Mus musculus GN=Slc36a3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 138/308 (44%), Gaps = 32/308 (10%)
Query: 22 PKSSGRVTGTASA-AQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCM 80
PK R A Q +++ S +GTG LGLP A + AG L G + ++ G T +CM
Sbjct: 39 PKKGPRREADALMFIQIFIHLLKSNIGTGFLGLPLAVKNAGLLVGPVSLLAIGALTVHCM 98
Query: 81 LLLIQCRDKLVS---------EDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGS 131
+L+ C L E+T+ +T + GR++ FL+ +Q G
Sbjct: 99 DILLNCACHLTQRLQRSFVNYEETTMYSLETCPSPWLRTHSVWGRYVVSFLLIVTQLGFC 158
Query: 132 VAYLVFIGQNLFSIFKS--YTS--------------LTYRSFIFLVVPVQILLSWINSLS 175
Y +F+ NL I + +TS L R ++ ++P ILL I +
Sbjct: 159 SVYFMFLADNLQQIMEEAHFTSNVCQPRQSLVMTSILDTRFYMLTILPFLILLVLIQNPQ 218
Query: 176 ALAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFE 235
L+ FS A I + ++ L+ + +Q + +N + G A+F FE
Sbjct: 219 VLSIFSTLATITTLSSLALIFEYLIQT------PHHSNLPLVANWKTFLLFFGTAIFTFE 272
Query: 236 GFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDW 295
G GM L+S M+ +F +L + + +Y+ G G+M +G DT+ +TLNLP W
Sbjct: 273 GVGMVLPLKSQMKSPQQFPAVLYLGMSFVIFLYICLGTLGYMKFGTDTQASITLNLPICW 332
Query: 296 SSIAVQVI 303
+V+++
Sbjct: 333 LYQSVKLM 340
|
Mus musculus (taxid: 10090) |
| >sp|Q495N2|S36A3_HUMAN Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 143/289 (49%), Gaps = 32/289 (11%)
Query: 33 SAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVS 92
S QTL +++ +GTG+LGLP A + AG L G + ++ G+ T +CM++L+ C L S
Sbjct: 43 SMMQTLIHLLKCNIGTGLLGLPLAIKNAGLLVGPVSLLAIGVLTVHCMVILLNCAQHL-S 101
Query: 93 EDTSST-----ETKTYG-----DLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNL 142
+ T E YG + + GR+ FL+ +Q G Y +F+ NL
Sbjct: 102 QRLQKTFVNYGEATMYGLETCPNTWLRAHAVWGRYTVSFLLVITQLGFCSVYFMFMADNL 161
Query: 143 FSIF-KSYTS---------------LTYRSFIFLVVPVQILLSWINSLSALAPFSIFADI 186
+ K++ + L R ++ +++P ILL +I +L L+ FS A+I
Sbjct: 162 QQMVEKAHVTSNICQPREILTLTPILDIRFYMLIILPFLILLVFIQNLKVLSVFSTLANI 221
Query: 187 CNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESS 246
+ +M L+ + ++ I + + +N + G A+F FEG GM L++
Sbjct: 222 TTLGSMALIFEYIMEGI-----PYPSNLPLMANWKTFLLFFGTAIFTFEGVGMVLPLKNQ 276
Query: 247 MRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDW 295
M+ +FS +L + + ++Y++ G G+M +G DT+ +TLNLP W
Sbjct: 277 MKHPQQFSFVLYLGMSIVIILYILLGTLGYMKFGSDTQASITLNLPNCW 325
|
Homo sapiens (taxid: 9606) |
| >sp|Q4V8B1|S36A3_RAT Proton-coupled amino acid transporter 3 OS=Rattus norvegicus GN=Slc36a3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 137/306 (44%), Gaps = 31/306 (10%)
Query: 23 KSSGRVTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLL 82
K R Q +++ S +GTG LGLP A + AG L G + ++ G T +CM +
Sbjct: 41 KKPRRKADALMFIQIFIHLLKSNIGTGFLGLPLAVKNAGLLVGPVSLLAIGALTVHCMDI 100
Query: 83 LIQCRDKLVS---------EDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVA 133
L+ C L S E+T+ +T + GR++ FL+ +Q G
Sbjct: 101 LLNCACHLTSRLQRSFVNYEETTMYSLETCPSPWLRTHSVWGRYVVSFLLIVTQLGFCSV 160
Query: 134 YLVFIGQNLFSIFKS--YTS--------------LTYRSFIFLVVPVQILLSWINSLSAL 177
Y +F+ NL I + +TS L R ++ ++P ILL + + L
Sbjct: 161 YFMFMADNLQQIVEEAHFTSNVCQPRQSLVMTSILDTRFYMLTILPFLILLVLVQNPQVL 220
Query: 178 APFSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGF 237
+ FS A I + ++ L+ + +Q + ++ + G A+F FEG
Sbjct: 221 SIFSTLATITTLSSLALIFEYLIQ------IPHHSHLPLVASWKTFLLFFGTAIFTFEGV 274
Query: 238 GMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSS 297
GM L+S M+ +F +L + + +Y+ G G+M +G DT+ +TLNLP W
Sbjct: 275 GMVLPLKSQMKSPQQFPAVLYLGMSFVIFLYICLGTLGYMKFGADTQASITLNLPNCWLY 334
Query: 298 IAVQVI 303
+V+++
Sbjct: 335 QSVKLM 340
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q924A5|S36A1_RAT Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 158/338 (46%), Gaps = 45/338 (13%)
Query: 4 REEGGENHMSNEI---ENP------LLPKSSGRVTGTASAA--QTLGNIIVSIVGTGVLG 52
R E ++ S ++ E+P P S R+ +S QTL +++ +GTG+LG
Sbjct: 7 RNEDYHDYSSTDVSPEESPSEGLGSFSPGSYQRLGENSSMTWFQTLIHLLKGNIGTGLLG 66
Query: 53 LPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGD---LGYK 109
LP A + AG L G L +++ G+ +CM +L++C L + YGD G +
Sbjct: 67 LPLAVKNAGLLLGPLSLLVIGIVAVHCMGILVKCAHHLCRR--LNKPFLDYGDTVMYGLE 124
Query: 110 C--------MGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKS------------- 148
C GR + +F + +Q G Y VF+ N + ++
Sbjct: 125 CSPSTWIRNHSHWGRRIVDFFLVVTQLGFCCVYFVFLADNFKQVIEAANGTTTNCNNNET 184
Query: 149 ---YTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILG 205
++ R ++ +P +LLS+I +L L+ FS+ A+I +++ ++ + VQ+I
Sbjct: 185 VILTPTMDSRLYMLTFLPFLVLLSFIRNLRILSIFSLLANISMFVSLIMIYQFIVQRIPD 244
Query: 206 GEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGIT 265
+ + + P G A+F FEG G+ LE+ M++ +F +L IT
Sbjct: 245 -----PSHLPLVAPWKTYPLFFGTAIFAFEGIGVVLPLENKMKDSQKFPLILYLGMAIIT 299
Query: 266 LVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQVI 303
++Y+ G G++ +G D K +TLNLP W +V+++
Sbjct: 300 VLYISLGSLGYLQFGADIKGSITLNLPNCWLYQSVKLL 337
|
Neutral amino acid/proton symporter. Probably involved in the efflux of lysosomal proteolysis products such as L-proline, L-alanine and glycine from the cell. May play a role in specifying sites for exocytosis in neurons. Rattus norvegicus (taxid: 10116) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 326 | ||||||
| 255566253 | 429 | amino acid transporter, putative [Ricinu | 0.815 | 0.620 | 0.768 | 1e-118 | |
| 224139958 | 414 | aromatic and neutral amino acid transpor | 0.855 | 0.673 | 0.721 | 1e-117 | |
| 297829744 | 432 | hypothetical protein ARALYDRAFT_897397 [ | 0.865 | 0.652 | 0.699 | 1e-110 | |
| 15229892 | 432 | aromatic and neutral transporter 1 [Arab | 0.865 | 0.652 | 0.706 | 1e-109 | |
| 312283173 | 435 | unnamed protein product [Thellungiella h | 0.865 | 0.648 | 0.694 | 1e-106 | |
| 449459582 | 417 | PREDICTED: proton-coupled amino acid tra | 0.812 | 0.635 | 0.670 | 1e-103 | |
| 2576363 | 432 | amino acid transport protein [Arabidopsi | 0.865 | 0.652 | 0.667 | 1e-100 | |
| 225433698 | 425 | PREDICTED: proton-coupled amino acid tra | 0.865 | 0.663 | 0.636 | 2e-99 | |
| 219362401 | 428 | uncharacterized protein LOC100216823 [Ze | 0.852 | 0.649 | 0.578 | 8e-84 | |
| 125557757 | 424 | hypothetical protein OsI_25437 [Oryza sa | 0.806 | 0.620 | 0.605 | 2e-83 |
| >gi|255566253|ref|XP_002524114.1| amino acid transporter, putative [Ricinus communis] gi|223536682|gb|EEF38324.1| amino acid transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/268 (76%), Positives = 240/268 (89%), Gaps = 2/268 (0%)
Query: 36 QTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDT 95
QTLGNIIVSIVGTG+LGLPFAF++AGW AG +GV++AG++TYYCMLLL+QCRDK SE+
Sbjct: 30 QTLGNIIVSIVGTGILGLPFAFKIAGWFAGSVGVLVAGIATYYCMLLLVQCRDKQASEEL 89
Query: 96 SSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSY-TSLTY 154
+ ETKTYGDLGY+CMG GR+LTEFLIFTSQCGGSVAYLVFIGQNL SIFKS L +
Sbjct: 90 TP-ETKTYGDLGYECMGNTGRYLTEFLIFTSQCGGSVAYLVFIGQNLSSIFKSTGHGLNF 148
Query: 155 RSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRK 214
S+IFL+VP++I LSWINSLSALAPFSIFAD+CN+LAM +VVKEDV+K++ GEF FSDR
Sbjct: 149 SSYIFLLVPIEIALSWINSLSALAPFSIFADVCNMLAMAIVVKEDVEKVISGEFKFSDRT 208
Query: 215 AVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFF 274
A++SNI GLPFAGGMAVFCFEGFGMT ALE+SM ERGRFS LLA+AFTGITLVYV+FGF
Sbjct: 209 AITSNIGGLPFAGGMAVFCFEGFGMTLALEASMTERGRFSSLLAKAFTGITLVYVLFGFS 268
Query: 275 GFMAYGDDTKDIVTLNLPKDWSSIAVQV 302
G+MAYGD TKDI+TLNLP +WS+IAVQ+
Sbjct: 269 GYMAYGDQTKDIITLNLPHNWSTIAVQI 296
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139958|ref|XP_002323359.1| aromatic and neutral amino acid transporter [Populus trichocarpa] gi|222867989|gb|EEF05120.1| aromatic and neutral amino acid transporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/284 (72%), Positives = 249/284 (87%), Gaps = 5/284 (1%)
Query: 19 PLLPKSSGRVTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYY 78
PLL SS TGTAS QTLGNIIVS+VGTG+LGLPFAFR+AGWLAG LGV+ AG++TYY
Sbjct: 4 PLLESSS---TGTASKIQTLGNIIVSVVGTGILGLPFAFRIAGWLAGSLGVLAAGVATYY 60
Query: 79 CMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFI 138
CMLLL+QC++KL S++ + ET+TYGDLGYKCMG GR+LTEFLIF SQCGG+VAYLVFI
Sbjct: 61 CMLLLVQCKEKLASQELTP-ETETYGDLGYKCMGNTGRYLTEFLIFISQCGGAVAYLVFI 119
Query: 139 GQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKE 198
GQNL S+FK + L+ SFIFL+VP++I LSWI+SLS+LAPFSIFADICNVLAM +V+KE
Sbjct: 120 GQNLSSVFKGH-GLSLSSFIFLLVPIEIALSWIHSLSSLAPFSIFADICNVLAMAVVLKE 178
Query: 199 DVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLA 258
D+ K++ GEF F DRKA++S+I GLPFA GMAVFCFEGFGMT +LE+SM+ERG F+ LLA
Sbjct: 179 DLDKVISGEFRFGDRKAITSSIGGLPFAAGMAVFCFEGFGMTLSLEASMKERGGFASLLA 238
Query: 259 QAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQV 302
+AF+GITL+YV+FGF G+MAYGD+TKDI+TLNLP +WS+IAVQV
Sbjct: 239 KAFSGITLLYVLFGFSGYMAYGDETKDIITLNLPNNWSTIAVQV 282
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297829744|ref|XP_002882754.1| hypothetical protein ARALYDRAFT_897397 [Arabidopsis lyrata subsp. lyrata] gi|297328594|gb|EFH59013.1| hypothetical protein ARALYDRAFT_897397 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/286 (69%), Positives = 234/286 (81%), Gaps = 4/286 (1%)
Query: 19 PLLPKSSGRVTG--TASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLST 76
PL+ TG SA QTLGNIIVSIVGTGVLGLP+AFRVAGW AG LGV+I G +T
Sbjct: 16 PLIKPPPSETTGGDRTSALQTLGNIIVSIVGTGVLGLPYAFRVAGWFAGSLGVIIVGFAT 75
Query: 77 YYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLV 136
YYCMLLLIQCRDKL SE E+KTYGDLG+KCMG GR+LTEFLIFT+QCGGSVAYLV
Sbjct: 76 YYCMLLLIQCRDKLESEQ-GEEESKTYGDLGFKCMGTKGRYLTEFLIFTAQCGGSVAYLV 134
Query: 137 FIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVV 196
FIG+NL SIF SY L+ SFI ++VP+++ LSWI SLSAL+PFSIFADICN++AM VV
Sbjct: 135 FIGRNLSSIFSSY-GLSMVSFILILVPIEVGLSWITSLSALSPFSIFADICNIIAMCFVV 193
Query: 197 KEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKL 256
KE+V+ ++ G+FSFSDR A+SS I GLPFAGG+AVFCFEGF MT ALE+SMR+R F KL
Sbjct: 194 KENVEMVIEGDFSFSDRTAISSTIGGLPFAGGVAVFCFEGFAMTLALENSMRDREAFPKL 253
Query: 257 LAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQV 302
LA+ GIT VYV+FGF G+MAYGD TKDI+TLNLP +WS+IAVQ+
Sbjct: 254 LAKVLAGITFVYVLFGFCGYMAYGDQTKDIITLNLPNNWSAIAVQI 299
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15229892|ref|NP_187796.1| aromatic and neutral transporter 1 [Arabidopsis thaliana] gi|6671946|gb|AAF23206.1|AC016795_19 putative amino acid transporter protein [Arabidopsis thaliana] gi|30725278|gb|AAP37661.1| At3g11900 [Arabidopsis thaliana] gi|110743438|dbj|BAE99605.1| putative amino acid transporter protein [Arabidopsis thaliana] gi|332641594|gb|AEE75115.1| aromatic and neutral transporter 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/286 (70%), Positives = 235/286 (82%), Gaps = 4/286 (1%)
Query: 19 PLLPKSSGRVTG--TASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLST 76
PL+ TG SA QTLGNIIVSIVGTGVLGLP+AFR+AGWLAG LGV+I G +T
Sbjct: 16 PLIKSPPSETTGGDRTSALQTLGNIIVSIVGTGVLGLPYAFRIAGWLAGSLGVIIVGFAT 75
Query: 77 YYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLV 136
YYCMLLLIQCRDKL SE E+KTYGDLG+KCMG GR+LTEFLIFT+QCGGSVAYLV
Sbjct: 76 YYCMLLLIQCRDKLESE-EGEEESKTYGDLGFKCMGTKGRYLTEFLIFTAQCGGSVAYLV 134
Query: 137 FIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVV 196
FIG+NL SIF SY L+ SFI ++VP+++ LSWI SLSAL+PFSIFADICN++AM VV
Sbjct: 135 FIGRNLSSIFSSY-GLSMVSFILILVPIEVGLSWITSLSALSPFSIFADICNIIAMCFVV 193
Query: 197 KEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKL 256
KE+V+ ++ G+FSFSDR A+SS I GLPFAGG+AVFCFEGF MT ALESSMRER F KL
Sbjct: 194 KENVEMVIEGDFSFSDRTAISSTIGGLPFAGGVAVFCFEGFAMTLALESSMREREAFPKL 253
Query: 257 LAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQV 302
LA+ GIT VYV+FGF G+MAYGD TKDI+TLNLP +WS+IAVQ+
Sbjct: 254 LAKVLAGITFVYVLFGFCGYMAYGDQTKDIITLNLPNNWSAIAVQI 299
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312283173|dbj|BAJ34452.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/285 (69%), Positives = 233/285 (81%), Gaps = 3/285 (1%)
Query: 19 PLLPKSSGRVTGTASAA-QTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTY 77
PL+ TG + A QTLGNIIVSIVGTGVLGLP+AFRVAGW AG LGV+I G +TY
Sbjct: 15 PLIKSPPSTTTGDRTTALQTLGNIIVSIVGTGVLGLPYAFRVAGWFAGSLGVIIVGFATY 74
Query: 78 YCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVF 137
YCMLLLIQCRDKL SE E+KTYGDLG+KCMG GR+LTEFLIFT+QCGGSVAYLVF
Sbjct: 75 YCMLLLIQCRDKLESE-EGKEESKTYGDLGFKCMGTKGRYLTEFLIFTAQCGGSVAYLVF 133
Query: 138 IGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVK 197
IG+N+ SIFKS L+ SFI ++VP++ LSWI SLSAL+PFSIFADICN++AM VVK
Sbjct: 134 IGRNMSSIFKS-CGLSMVSFILILVPIEAGLSWITSLSALSPFSIFADICNIIAMCFVVK 192
Query: 198 EDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLL 257
E+V+ ++ G+FSF DR A+SS I GLPFAGG+AVFCFEGF MT ALE SM+ER F KLL
Sbjct: 193 ENVEMVIEGDFSFGDRTAISSTIGGLPFAGGVAVFCFEGFAMTLALEGSMKEREAFPKLL 252
Query: 258 AQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQV 302
A+ GIT VYV+FGF G+MAYGD+TKDI+TLNLPK+WS+IAVQ+
Sbjct: 253 AKVLAGITFVYVLFGFCGYMAYGDETKDIITLNLPKNWSAIAVQI 297
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459582|ref|XP_004147525.1| PREDICTED: proton-coupled amino acid transporter 1-like [Cucumis sativus] gi|449484915|ref|XP_004157016.1| PREDICTED: proton-coupled amino acid transporter 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/267 (67%), Positives = 223/267 (83%), Gaps = 2/267 (0%)
Query: 36 QTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDT 95
Q L NIIVS+VGTGVLGLPFAFR+AG+ AG GV++ L+TYYCMLLL++CR+KL +
Sbjct: 20 QALANIIVSVVGTGVLGLPFAFRIAGYAAGSFGVLLVALATYYCMLLLVKCREKLALQGR 79
Query: 96 SSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYR 155
S E++TYGDLGY CMG GR+LTEFLIF +QCGGSVAYLVFIGQNL S+F+SY +
Sbjct: 80 SK-ESQTYGDLGYICMGNKGRYLTEFLIFFAQCGGSVAYLVFIGQNLSSVFQSY-GIPLS 137
Query: 156 SFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRKA 215
S+IFL+ V+++LSWI SL+ALAPFSIFADICN +AM +VVKED+QK + G SF++R A
Sbjct: 138 SYIFLIAAVEVVLSWIGSLAALAPFSIFADICNAIAMGIVVKEDIQKAIAGGISFNERTA 197
Query: 216 VSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFG 275
++SN+RGLPFAGGMAVFCFEGFGMT AL+SSM+++ F K+L QA GIT+VY++FGF G
Sbjct: 198 ITSNLRGLPFAGGMAVFCFEGFGMTLALQSSMKDKAAFPKVLGQALVGITIVYILFGFSG 257
Query: 276 FMAYGDDTKDIVTLNLPKDWSSIAVQV 302
+MAYGDDT+DI+TLNLP WS+ AVQV
Sbjct: 258 YMAYGDDTRDIITLNLPNTWSTKAVQV 284
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2576363|gb|AAB82307.1| amino acid transport protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/286 (66%), Positives = 225/286 (78%), Gaps = 4/286 (1%)
Query: 19 PLLPKSSGRVTG--TASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLST 76
PL+ TG SA QTLGNIIVSIVGTGVLGLP+AFR+AGWLAG LGV+I G +T
Sbjct: 16 PLIKSPPSETTGGDRTSALQTLGNIIVSIVGTGVLGLPYAFRIAGWLAGSLGVIIVGFAT 75
Query: 77 YYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLV 136
YYCMLLLIQCRDKL SE E+KTYGDLG+KCMG GR+LTEFLIFT+QCGGSVAYLV
Sbjct: 76 YYCMLLLIQCRDKLESE-EGEEESKTYGDLGFKCMGTKGRYLTEFLIFTAQCGGSVAYLV 134
Query: 137 FIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVV 196
FIG+NL SIF SY L+ SFI ++VP+++ LSWI SLSAL+PFSIFADICN++AM VV
Sbjct: 135 FIGRNLSSIFSSY-GLSMVSFILILVPIEVGLSWITSLSALSPFSIFADICNIIAMCFVV 193
Query: 197 KEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKL 256
KE+V+ ++ G+FSFSDR A+SS I LPFAGG+AVFCFEGF MT ALESS+RER F KL
Sbjct: 194 KENVEMVIEGDFSFSDRTAISSTIGSLPFAGGVAVFCFEGFAMTLALESSIREREAFPKL 253
Query: 257 LAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQV 302
LA+ G+ L GF YGD TK+I+TLNLP +WS+IAVQ+
Sbjct: 254 LAKCLPGLRLSMCCSGFVLIWHYGDQTKNIITLNLPNNWSAIAVQI 299
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433698|ref|XP_002266156.1| PREDICTED: proton-coupled amino acid transporter 4 [Vitis vinifera] gi|296089626|emb|CBI39445.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 187/294 (63%), Positives = 227/294 (77%), Gaps = 12/294 (4%)
Query: 9 ENHMSNEIENPLLPKSSGRVTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLG 68
E H E PLL SS R GTAS+ QTLGNI+VSIVGTGVLGLPFAFRVAGWLAG +G
Sbjct: 2 EAH-GKSAETPLL-GSSHR--GTASSIQTLGNILVSIVGTGVLGLPFAFRVAGWLAGTVG 57
Query: 69 VMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQC 128
V++ GLST YCML+L+QCR +LV E KTYGDLGY+C+GK GR+LTEFLIF S C
Sbjct: 58 VIVTGLSTCYCMLILVQCRKRLVCG-----EEKTYGDLGYECLGKPGRYLTEFLIFISYC 112
Query: 129 GGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICN 188
GGSVAYL FIGQ L S+F + +T+ SFIF +VP++I+LSWI +LSAL+PF+IFAD+CN
Sbjct: 113 GGSVAYLKFIGQTLASVF---SGMTFTSFIFCLVPIEIMLSWIRTLSALSPFTIFADVCN 169
Query: 189 VLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMR 248
V A+ +VVKEDVQ + G +R+A+S I GLPF G+AVFCFEGFGMT ALE SMR
Sbjct: 170 VAAIAMVVKEDVQVLWGSGSDIGERRALSPTIAGLPFGAGVAVFCFEGFGMTLALEGSMR 229
Query: 249 ERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQV 302
ER F+++L QAF G+T VYV+FG G++AYGD T DI TLNLP+ WSS+ VQ+
Sbjct: 230 ERDAFTRVLIQAFCGLTTVYVLFGLIGYLAYGDQTLDIATLNLPQGWSSMVVQL 283
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|219362401|ref|NP_001136691.1| uncharacterized protein LOC100216823 [Zea mays] gi|194689618|gb|ACF78893.1| unknown [Zea mays] gi|219886417|gb|ACL53583.1| unknown [Zea mays] gi|414884072|tpg|DAA60086.1| TPA: hypothetical protein ZEAMMB73_403124 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 316 bits (810), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 169/292 (57%), Positives = 211/292 (72%), Gaps = 14/292 (4%)
Query: 19 PLLP-----KSSGRVTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAG 73
PLLP +SSG V G A++AQTLGN++VSIVGTGVLGLP+AFR AGW+AG +GV AG
Sbjct: 14 PLLPAQAGERSSGGVGGGATSAQTLGNVVVSIVGTGVLGLPYAFRAAGWVAGSIGVAAAG 73
Query: 74 LSTYYCMLLLIQCRDKLVSEDTSS--TETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGS 131
+T YCMLLL+ CRDKL E+T TYGDLG +C G GR LTE L+ SQ GGS
Sbjct: 74 SATLYCMLLLVDCRDKLKEEETEECCHGHYTYGDLGDRCFGTIGRCLTETLVLVSQAGGS 133
Query: 132 VAYLVFIGQNLFSIFKSYTSLTYRSFIF-LVVPVQILLSWINSLSALAPFSIFADICNVL 190
VAYL+FIGQNL S F S FIF +++P+QI LS+I SLS+L+PFSIFAD+CNVL
Sbjct: 134 VAYLIFIGQNLHSTFSQLMSPA--GFIFAILLPLQIALSFIRSLSSLSPFSIFADVCNVL 191
Query: 191 AMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRER 250
AM +V+KED+Q + FS+R A + + +PF G+AVFCFEGF MT ALE+SM +R
Sbjct: 192 AMAIVIKEDLQLF---DHPFSNRSAF-NGLWAVPFTFGVAVFCFEGFSMTLALEASMADR 247
Query: 251 GRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQV 302
+F +L+QA I VYV FG G++AYG+ TKDI+TLNLP +WSS AV+V
Sbjct: 248 RKFRSVLSQAVAAIIAVYVCFGVCGYLAYGEATKDIITLNLPNNWSSAAVKV 299
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125557757|gb|EAZ03293.1| hypothetical protein OsI_25437 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/276 (60%), Positives = 205/276 (74%), Gaps = 13/276 (4%)
Query: 32 ASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLV 91
A++AQTLGN++VSIVGTGVLGLP+AFR AGW+AG LGV AG +T YCMLLL+ CRDKL
Sbjct: 28 ATSAQTLGNVVVSIVGTGVLGLPYAFRTAGWVAGSLGVAAAGCATLYCMLLLVDCRDKL- 86
Query: 92 SEDTSSTETK----TYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFK 147
E+ S ET TYGDLG KC G GR LTE LI SQ GGSVAYL+FIGQNL S+F
Sbjct: 87 -EEKESEETYHGHYTYGDLGEKCFGTIGRCLTEILILVSQAGGSVAYLIFIGQNLHSVFS 145
Query: 148 SYTSLTYRSFIF-LVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILGG 206
S +FIF +++PVQI LS+I SLS+L+PFSIFAD+CNVLAM +V+KED+Q
Sbjct: 146 QLMSPA--AFIFAILLPVQIALSFIRSLSSLSPFSIFADVCNVLAMAIVIKEDLQLF--- 200
Query: 207 EFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITL 266
+ F++R A + + +PF G+AVFCFEGF MT ALESSM ER +F +L+QA GI +
Sbjct: 201 DHPFANRSAFN-GLWAIPFTFGVAVFCFEGFSMTLALESSMAERRKFRWVLSQAVVGIII 259
Query: 267 VYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQV 302
VY FG G++AYG+ TKDI+TLNLP WSS AV+V
Sbjct: 260 VYACFGVCGYLAYGEATKDIITLNLPNSWSSAAVKV 295
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 326 | ||||||
| TAIR|locus:2081471 | 432 | ANT1 "AT3G11900" [Arabidopsis | 0.865 | 0.652 | 0.706 | 1.1e-105 | |
| TAIR|locus:504955913 | 413 | AT2G42005 "AT2G42005" [Arabido | 0.868 | 0.685 | 0.385 | 9.3e-43 | |
| TAIR|locus:2156862 | 427 | AT5G65990 [Arabidopsis thalian | 0.892 | 0.681 | 0.355 | 7.5e-41 | |
| TAIR|locus:2121733 | 436 | AT4G38250 [Arabidopsis thalian | 0.852 | 0.637 | 0.326 | 2.1e-36 | |
| FB|FBgn0036007 | 500 | path "pathetic" [Drosophila me | 0.815 | 0.532 | 0.300 | 4.2e-27 | |
| UNIPROTKB|Q495N2 | 470 | SLC36A3 "Proton-coupled amino | 0.564 | 0.391 | 0.282 | 5.4e-27 | |
| ZFIN|ZDB-GENE-050309-239 | 488 | im:7152917 "im:7152917" [Danio | 0.515 | 0.344 | 0.314 | 1.8e-25 | |
| FB|FBgn0032036 | 504 | CG13384 [Drosophila melanogast | 0.779 | 0.503 | 0.308 | 2.1e-24 | |
| UNIPROTKB|F1P8V1 | 485 | SLC36A3 "Uncharacterized prote | 0.564 | 0.379 | 0.282 | 3.6e-24 | |
| SGD|S000001629 | 692 | AVT3 "Vacuolar transporter" [S | 0.883 | 0.416 | 0.285 | 1.9e-23 |
| TAIR|locus:2081471 ANT1 "AT3G11900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1046 (373.3 bits), Expect = 1.1e-105, P = 1.1e-105
Identities = 202/286 (70%), Positives = 236/286 (82%)
Query: 19 PLLPKSSGRVTG--TASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLST 76
PL+ TG SA QTLGNIIVSIVGTGVLGLP+AFR+AGWLAG LGV+I G +T
Sbjct: 16 PLIKSPPSETTGGDRTSALQTLGNIIVSIVGTGVLGLPYAFRIAGWLAGSLGVIIVGFAT 75
Query: 77 YYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLV 136
YYCMLLLIQCRDKL SE+ E+KTYGDLG+KCMG GR+LTEFLIFT+QCGGSVAYLV
Sbjct: 76 YYCMLLLIQCRDKLESEE-GEEESKTYGDLGFKCMGTKGRYLTEFLIFTAQCGGSVAYLV 134
Query: 137 FIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVV 196
FIG+NL SIF SY L+ SFI ++VP+++ LSWI SLSAL+PFSIFADICN++AM VV
Sbjct: 135 FIGRNLSSIFSSY-GLSMVSFILILVPIEVGLSWITSLSALSPFSIFADICNIIAMCFVV 193
Query: 197 KEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKL 256
KE+V+ ++ G+FSFSDR A+SS I GLPFAGG+AVFCFEGF MT ALESSMRER F KL
Sbjct: 194 KENVEMVIEGDFSFSDRTAISSTIGGLPFAGGVAVFCFEGFAMTLALESSMREREAFPKL 253
Query: 257 LAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQV 302
LA+ GIT VYV+FGF G+MAYGD TKDI+TLNLP +WS+IAVQ+
Sbjct: 254 LAKVLAGITFVYVLFGFCGYMAYGDQTKDIITLNLPNNWSAIAVQI 299
|
|
| TAIR|locus:504955913 AT2G42005 "AT2G42005" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
Identities = 121/314 (38%), Positives = 171/314 (54%)
Query: 2 MGREEGGENHMSNEIENPLLPKSSGRVTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAG 61
MG EE G + E + PLL K GR +S +T N+ ++IVG GVLGLP+AF+ G
Sbjct: 1 MGLEEQGR---ARE-DTPLLGK--GRPL--SSKFKTFANVFIAIVGAGVLGLPYAFKRTG 52
Query: 62 WLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEF 121
WL G L + +CM+LL+ R KL + S +GDLG+ G GRF+ +
Sbjct: 53 WLMGLLTLFSVAALINHCMMLLVHIRRKLGVSNIGS-----FGDLGFAACGNLGRFVVDI 107
Query: 122 LIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRS------------FIFLVVPVQILLS 169
LI SQ G V YL+FIG L ++ K S T S +I+ P Q+ L+
Sbjct: 108 LIILSQAGFCVGYLIFIGNTLANLSKPTKSTTLMSLRHLMGVSPKSLYIWGCFPFQLGLN 167
Query: 170 WINSLSALAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAG-G 228
I +L+ LAP SIFAD+ ++ AM +V+ ED+ KI + V+ + F G G
Sbjct: 168 SIKTLTHLAPLSIFADVVDLGAMAVVIVEDI-KIT----VVQRPQVVAFGGMSVFFYGMG 222
Query: 229 MAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVT 288
+AV+ FEG GM LES +++ +F K+LA + I ++Y FG G+MA+GDDT DI+T
Sbjct: 223 VAVYAFEGVGMVLPLESETKDKDKFGKVLALSMLFIAVMYGSFGVLGYMAFGDDTMDIIT 282
Query: 289 LNLPKDWSSIAVQV 302
NL S VQ+
Sbjct: 283 ANLGAGVVSSLVQL 296
|
|
| TAIR|locus:2156862 AT5G65990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
Identities = 111/312 (35%), Positives = 168/312 (53%)
Query: 4 REEGGENHM--SNEIENPLLPKSSGRVTGT---ASAAQTLGNIIVSIVGTGVLGLPFAFR 58
+E G +H S + L P + G +S +T N+ ++IVG GVLGLP+ F+
Sbjct: 5 QEAGSSSHSLPSGSSSHSLPPTEDTPLLGPRTLSSQPKTFANVFIAIVGAGVLGLPYTFK 64
Query: 59 VAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFL 118
GWL G L ++ T++CM+LL+ R KL S ++ T ++GDLG G AGR +
Sbjct: 65 KTGWLLGLLTLLFVSSLTFFCMMLLVHTRRKLESLSGFNSIT-SFGDLGESVCGPAGRLV 123
Query: 119 TEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTS----LTYRS-FIFLVVPVQILLSWINS 173
+ ++ SQ G V+YL+F+ + ++ T L S +++ P Q+ L+ I S
Sbjct: 124 VDVMLVLSQSGFCVSYLIFVATTMANLLSRGTEHILGLDAASIYLWGCFPFQLGLNSIPS 183
Query: 174 LSALAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLP--FAG-GMA 230
L+ LAP SIFADI +V A +V+ +DV F F R+ G+ F G G+A
Sbjct: 184 LTHLAPLSIFADIVDVAATLVVMVQDV-------FIFLKRRPPLRVFGGVSVFFYGLGVA 236
Query: 231 VFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLN 290
V+ FEG GM LE + + +F + L A I+++Y FG G+MAYG++TKDI+T N
Sbjct: 237 VYAFEGIGMVLPLELEAKYKDKFGRALGLAMGLISIMYGAFGLLGYMAYGEETKDIITTN 296
Query: 291 LPKDWSSIAVQV 302
L S VQ+
Sbjct: 297 LGTGVVSTLVQL 308
|
|
| TAIR|locus:2121733 AT4G38250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
Identities = 99/303 (32%), Positives = 162/303 (53%)
Query: 17 ENPLLPKSSGRVTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLST 76
++PLL G+ +S +T N+ +++VG GVLGLP+AF+ GWL G L ++ + T
Sbjct: 23 DSPLL----GKGPPLSSQFKTFANVFIAVVGAGVLGLPYAFKRTGWLMGVLLLVSVSVLT 78
Query: 77 YYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLV 136
++CM+LL+ R KL S + ++ ++GDLG+ G GR + + I SQ G V YL+
Sbjct: 79 HHCMMLLVYTRRKLDSFNAGISKIGSFGDLGFAVCGSLGRIVVDLFIILSQAGFCVGYLI 138
Query: 137 FIGQNLFSIF--KSYTSLTYR----SFIFLVVPVQILLSW--------INSLSALAPFSI 182
FIG L ++ +S TSL ++ FL V + L W +NS+ L +
Sbjct: 139 FIGTTLANLSDPESPTSLRHQFTRLGSEFLGVSSKSLYIWGCFPFQLGLNSIKTLTHLAP 198
Query: 183 FADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLP---FAGGMAVFCFEGFGM 239
+ +++ + + V+ + R V + G+ + G+AV+ FEG GM
Sbjct: 199 LSIFADIVDLGAMAVVIVEDSM---IILKQRPDVVA-FGGMSLFLYGMGVAVYSFEGVGM 254
Query: 240 TFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIA 299
LES M+++ +F K+LA I+L+Y+ FG G++A+G+DT DI+T NL S
Sbjct: 255 VLPLESEMKDKDKFGKVLALGMGFISLIYIAFGILGYLAFGEDTMDIITANLGAGLVSTV 314
Query: 300 VQV 302
VQ+
Sbjct: 315 VQL 317
|
|
| FB|FBgn0036007 path "pathetic" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 308 (113.5 bits), Expect = 4.2e-27, P = 4.2e-27
Identities = 89/296 (30%), Positives = 155/296 (52%)
Query: 36 QTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDT 95
+TL +++ + +GTG+LG+PFAF +G + G + +C +L++C KL T
Sbjct: 91 ETLTHLLKASLGTGILGMPFAFMCSGLIMGIFSTIFTAFICTHCSYVLVKCGHKLYYR-T 149
Query: 96 SSTETKTYGDL-------GYK-CMGKA--GRFLTEFLIFTSQCGGSVAYLVFIGQNLFSI 145
T+ T+ ++ G K C G A +F F +F + G Y V + N F
Sbjct: 150 RRTKM-TFAEIAEAAFQKGPKWCRGFAPVAKFSILFGLFLTYFGTCSVYTVIVASN-FEQ 207
Query: 146 FKSY---TSLTYRSFI-FLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKEDVQ 201
SY T+++ R I ++VP+ IL++W+ +L LAP S+ A++ L + + VQ
Sbjct: 208 LISYWTGTAVSLRMLICIMLVPL-ILIAWVPNLKYLAPVSMVANVFMGLGLGITFYYLVQ 266
Query: 202 KILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKL---LA 258
+ E +R++V + LP + +F E G+ LE++M+ F + L+
Sbjct: 267 DLPPVE----ERESVVWST--LPQFFSITIFAMEAIGVVMPLENNMKTPQSFLGICGVLS 320
Query: 259 QAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLP-KDWSSIAVQVISYVSHVTYCT 313
Q +G+TL+Y++ GF G++ YG T + +TLNLP ++W + V+V+ +S YCT
Sbjct: 321 QGMSGVTLIYMLLGFLGYLRYGSATGESITLNLPIEEWPAQTVKVL--ISLAVYCT 374
|
|
| UNIPROTKB|Q495N2 SLC36A3 "Proton-coupled amino acid transporter 3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 209 (78.6 bits), Expect = 5.4e-27, Sum P(2) = 5.4e-27
Identities = 58/205 (28%), Positives = 104/205 (50%)
Query: 115 GRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIF-KSY-TS--------------LTYRSFI 158
GR+ FL+ +Q G Y +F+ NL + K++ TS L R ++
Sbjct: 134 GRYTVSFLLVITQLGFCSVYFMFMADNLQQMVEKAHVTSNICQPREILTLTPILDIRFYM 193
Query: 159 FLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSS 218
+++P ILL +I +L L+ FS A+I + +M L+ + I+ G + + +
Sbjct: 194 LIILPFLILLVFIQNLKVLSVFSTLANITTLGSMALIF----EYIMEG-IPYPSNLPLMA 248
Query: 219 NIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMA 278
N + G A+F FEG GM L++ M+ +FS +L + + ++Y++ G G+M
Sbjct: 249 NWKTFLLFFGTAIFTFEGVGMVLPLKNQMKHPQQFSFVLYLGMSIVIILYILLGTLGYMK 308
Query: 279 YGDDTKDIVTLNLPKDWSSIAVQVI 303
+G DT+ +TLNLP W +V+++
Sbjct: 309 FGSDTQASITLNLPNCWLYQSVKLM 333
|
|
| ZFIN|ZDB-GENE-050309-239 im:7152917 "im:7152917" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 55/175 (31%), Positives = 89/175 (50%)
Query: 131 SVAYLVFIGQNLFSI-FKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNV 189
S A V + N S ++ R ++ ++P I+L++I L +A S A++C
Sbjct: 173 STAETVLLSSNSSEASVASSVAIDLRLYMVFLLPFIIVLTFIRDLRNMAALSAIANLC-- 230
Query: 190 LAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRE 249
+A++L+ + + + S R +S R PF G A+F FEG G+ LE+ MRE
Sbjct: 231 MAISLIF---IFSYILNDLSDPRRLPYASTWRKFPFFFGTAIFAFEGIGVVLPLENQMRE 287
Query: 250 RGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKD-WSSIAVQVI 303
RF + L I ++YV G++ + DD K +TLNLP D WS+ V+V+
Sbjct: 288 PKRFPQALNIGMGFIIVLYVTLATLGYLRFRDDIKGSITLNLPHDSWSNQLVKVL 342
|
|
| FB|FBgn0032036 CG13384 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 284 (105.0 bits), Expect = 2.1e-24, P = 2.1e-24
Identities = 88/285 (30%), Positives = 139/285 (48%)
Query: 37 TLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLV----- 91
TL +++ +GTG+L +P AF+ AG G G MI G +CM +L+ C +L
Sbjct: 101 TLVHLLKGNIGTGILAMPDAFKNAGLYVGLFGTMIMGAICTHCMHMLVNCSHELCRRFQQ 160
Query: 92 -SEDTSSTETKTY--GDLGYKCMGK-AGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFK 147
S D S ++ G LG + A R +T FL F +Q G Y +F+ N+ +
Sbjct: 161 PSLDFSEVAYCSFESGPLGLRRYSMLARRIVTTFL-FITQIGFCCVYFLFVALNIKDVMD 219
Query: 148 SYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNV--LAMT----LVVKEDVQ 201
Y + + ++ +++ ILL+ + +L L P S+ A + V LA+T LV DV
Sbjct: 220 HYYKMPVQIYLLIMLGPMILLNLVRNLKYLTPVSLVAALLTVAGLAITFSYMLVDLPDVH 279
Query: 202 KILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAF 261
+ K V++ LP G A++ FEG G+ LE++MR F
Sbjct: 280 TV----------KPVATWAT-LPLYFGTAIYAFEGIGVVLPLENNMRTPEDFGGTTGVLN 328
Query: 262 TGITLV---YVMFGFFGFMAYGDDTKDIVTLNLPK-DWSSIAVQV 302
TG+ +V Y GFFG++ YG+ + +TLNLP+ D S V++
Sbjct: 329 TGMVIVACLYTAVGFFGYLKYGEHVEGSITLNLPQGDTLSQLVRI 373
|
|
| UNIPROTKB|F1P8V1 SLC36A3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 193 (73.0 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
Identities = 58/205 (28%), Positives = 101/205 (49%)
Query: 115 GRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKS--YTS--------------LTYRSFI 158
GR+ FL+ T+Q G Y +F+ NL + + TS L R ++
Sbjct: 138 GRYTVSFLLITTQLGFCSVYFMFMADNLQQMVEEAHVTSNNCQPRKILALTPILDIRFYM 197
Query: 159 FLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSS 218
++P +LL +I +L L+ FS A+I + +M L+ + +++I S ++S
Sbjct: 198 LTILPFVVLLVFIQNLRMLSIFSTLANITTLGSMALIFEYIIKEIPDP----SSLPLMAS 253
Query: 219 NIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMA 278
L F G A+F FEG GM L++ M+ FS +L + + ++Y+ G G+M
Sbjct: 254 WKTFLLFFG-TAIFTFEGVGMVLPLKNQMKHPQHFSFVLYLGMSLVIILYICLGTLGYMK 312
Query: 279 YGDDTKDIVTLNLPKDWSSIAVQVI 303
+G T+ +TLNLP W +V+++
Sbjct: 313 FGSSTQASITLNLPNCWLYQSVKLM 337
|
|
| SGD|S000001629 AVT3 "Vacuolar transporter" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 279 (103.3 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 87/305 (28%), Positives = 143/305 (46%)
Query: 5 EEGGENHMSNEIENPLLPKSSGRVTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLA 64
EE E + E L+ + GR +S + + ++ S VGTGVL LP AF GW
Sbjct: 271 EEPEEEALETE-STQLVSREHGRHPHKSSTVKAVLLLLKSFVGTGVLFLPKAFHNGGWGF 329
Query: 65 GCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIF 124
L ++ L +Y C + LI +DK V D YGD+G G +F I
Sbjct: 330 SALCLLSCALISYGCFVSLITTKDK-VGVDG-------YGDMGRILYGPKMKFAILSSIA 381
Query: 125 TSQCGGSVAYLVFIGQNLFSIFKSYT-----SLTYRSFIFLVVPVQILLSWINSLSALAP 179
SQ G S AY VF NL +++ S++ ++IF V + + LS +++ L+
Sbjct: 382 LSQIGFSAAYTVFTATNLQVFSENFFHLKPGSISLATYIFAQVLIFVPLSLTRNIAKLSG 441
Query: 180 FSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGM 239
++ AD+ +L + V + I + SD + + F G A+F FEG G+
Sbjct: 442 TALIADLFILLGLVYVYVYSIYYIAVNGVA-SDTMLMFNKADWSLFIG-TAIFTFEGIGL 499
Query: 240 TFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWS-SI 298
++ SM+ F L+ + ++++ G + A+G D K +V LN P+D S ++
Sbjct: 500 LIPIQESMKHPKHFRPSLSAVMCIVAVIFISCGLLCYAAFGSDVKTVVLLNFPQDTSYTL 559
Query: 299 AVQVI 303
VQ++
Sbjct: 560 TVQLL 564
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 326 | |||
| pfam01490 | 406 | pfam01490, Aa_trans, Transmembrane amino acid tran | 2e-62 | |
| COG0814 | 415 | COG0814, SdaC, Amino acid permeases [Amino acid tr | 1e-22 | |
| PTZ00206 | 467 | PTZ00206, PTZ00206, amino acid transporter; Provis | 2e-05 |
| >gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein | Back alignment and domain information |
|---|
Score = 203 bits (518), Expect = 2e-62
Identities = 93/288 (32%), Positives = 154/288 (53%), Gaps = 10/288 (3%)
Query: 30 GTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDK 89
GT SA Q + N+I +I+G GVL LP+AF+ GW+ G + ++I GL + Y + LL+QC
Sbjct: 1 GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60
Query: 90 LVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSY 149
+ K+YGDLGY+ G G+ L F I + G ++YL+F G NL +IF S+
Sbjct: 61 VDKV--KGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSF 118
Query: 150 TSLTYRS---FIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILGG 206
+ S FI + + I LS+I +LSAL+ S+ A + L + ++V + +
Sbjct: 119 FDTCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVS-SLYIVILVLSVAELGVLT 177
Query: 207 EFSFSDRKAVS-SNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFS---KLLAQAFT 262
A + + L A G+ VF FEG + ++++M+ +F K+L A
Sbjct: 178 AQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAII 237
Query: 263 GITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQVISYVSHVT 310
+T++Y++ G G++A+G++ K + LNLPK I + + V H+
Sbjct: 238 IVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLL 285
|
This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406 |
| >gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 1e-22
Identities = 63/295 (21%), Positives = 111/295 (37%), Gaps = 17/295 (5%)
Query: 25 SGRVTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLI 84
+ T+S + + + +G GVL LP AF G+ G L ++IA TY +LLL+
Sbjct: 2 LSSMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLL 61
Query: 85 QCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFS 144
+ S + L +GK G L F + G VAY+V IG L S
Sbjct: 62 EALLS------SPNGKASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLAS 115
Query: 145 IFKSY---TSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFAD--ICNVLAMTLVVKED 199
+ L + + V LSW+ +L+ L S+ + ++ + + +
Sbjct: 116 FLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIPH 175
Query: 200 VQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRER-GRFSKLLA 258
+ + + +P VF F G +L + MR+ + +
Sbjct: 176 WNPANLFALPSASQSFWKYLLLAIPV----FVFSFGFHGNIPSLVNYMRKNSKKAVRKAI 231
Query: 259 QAFTGITLV-YVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQVISYVSHVTYC 312
+ I LV Y++ GFF F +G + ++ S ++ S +
Sbjct: 232 LIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSI 286
|
Length = 415 |
| >gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 62/275 (22%), Positives = 108/275 (39%), Gaps = 41/275 (14%)
Query: 40 NIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTE 99
NI S VG G++GLP A +G + + ++I T + + L DK T
Sbjct: 68 NIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK--------TN 119
Query: 100 TKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKS----------- 148
+TY + +G G + VAY++ +G L + K
Sbjct: 120 IRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKS 179
Query: 149 ----YTSLTYRSFIF-LVVPVQILLSWINSLSALAPFSIFADICNVLAMTLV-----VKE 198
TSL + F+ LV+P I +SL ++ ++ + V+ + + + E
Sbjct: 180 GNRLLTSLMWLCFMLPLVIPRHI-----DSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPE 234
Query: 199 DVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSM----RERGRFS 254
+++ + G+ ++ +S R + G+ VF F A E M R G+F
Sbjct: 235 NIKNVSVGKDDNAEIILFNSGNRAIE---GLGVFIFAYVFQITAYEVYMDMTNRSVGKFV 291
Query: 255 KLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTL 289
A +YV+ FFG+M +G + V L
Sbjct: 292 LASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLL 326
|
Length = 467 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 326 | |||
| KOG1304 | 449 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| KOG1303 | 437 | consensus Amino acid transporters [Amino acid tran | 100.0 | |
| PTZ00206 | 467 | amino acid transporter; Provisional | 100.0 | |
| PF01490 | 409 | Aa_trans: Transmembrane amino acid transporter pro | 100.0 | |
| PLN03074 | 473 | auxin influx permease; Provisional | 100.0 | |
| KOG1305 | 411 | consensus Amino acid transporter protein [Amino ac | 100.0 | |
| KOG4303 | 524 | consensus Vesicular inhibitory amino acid transpor | 99.97 | |
| COG0814 | 415 | SdaC Amino acid permeases [Amino acid transport an | 99.97 | |
| PRK10483 | 414 | tryptophan permease; Provisional | 99.88 | |
| PF03222 | 394 | Trp_Tyr_perm: Tryptophan/tyrosine permease family; | 99.87 | |
| TIGR00837 | 381 | araaP aromatic amino acid transport protein. aroma | 99.86 | |
| PRK09664 | 415 | tryptophan permease TnaB; Provisional | 99.86 | |
| PRK15132 | 403 | tyrosine transporter TyrP; Provisional | 99.85 | |
| TIGR00814 | 397 | stp serine transporter. The HAAAP family includes | 99.8 | |
| PRK13629 | 443 | threonine/serine transporter TdcC; Provisional | 99.8 | |
| PRK10435 | 435 | cadB lysine/cadaverine antiporter; Provisional | 99.72 | |
| PRK15049 | 499 | L-asparagine permease; Provisional | 99.72 | |
| PRK10655 | 438 | potE putrescine transporter; Provisional | 99.71 | |
| TIGR00912 | 359 | 2A0309 spore germination protein (amino acid perme | 99.71 | |
| PRK10249 | 458 | phenylalanine transporter; Provisional | 99.69 | |
| PRK10644 | 445 | arginine:agmatin antiporter; Provisional | 99.67 | |
| PRK11387 | 471 | S-methylmethionine transporter; Provisional | 99.66 | |
| TIGR01773 | 452 | GABAperm gamma-aminobutyrate permease. GabP is hig | 99.66 | |
| TIGR00906 | 557 | 2A0303 cationic amino acid transport permease. | 99.65 | |
| TIGR00905 | 473 | 2A0302 transporter, basic amino acid/polyamine ant | 99.65 | |
| PRK11021 | 410 | putative transporter; Provisional | 99.65 | |
| TIGR00909 | 429 | 2A0306 amino acid transporter. | 99.64 | |
| PRK11049 | 469 | D-alanine/D-serine/glycine permease; Provisional | 99.63 | |
| PRK10580 | 457 | proY putative proline-specific permease; Provision | 99.62 | |
| TIGR03810 | 468 | arg_ornith_anti arginine/ornithine antiporter. Mem | 99.62 | |
| PRK10238 | 456 | aromatic amino acid transporter; Provisional | 99.61 | |
| PRK10836 | 489 | lysine transporter; Provisional | 99.61 | |
| PRK10746 | 461 | putative transport protein YifK; Provisional | 99.61 | |
| TIGR00930 | 953 | 2a30 K-Cl cotransporter. | 99.6 | |
| TIGR00913 | 478 | 2A0310 amino acid permease (yeast). | 99.6 | |
| PF03845 | 320 | Spore_permease: Spore germination protein; InterPr | 99.6 | |
| TIGR00911 | 501 | 2A0308 L-type amino acid transporter. | 99.59 | |
| KOG1287 | 479 | consensus Amino acid transporters [Amino acid tran | 99.58 | |
| PRK11357 | 445 | frlA putative fructoselysine transporter; Provisio | 99.56 | |
| TIGR00908 | 442 | 2A0305 ethanolamine permease. The three genes used | 99.55 | |
| PRK10197 | 446 | gamma-aminobutyrate transporter; Provisional | 99.55 | |
| COG1113 | 462 | AnsP Gamma-aminobutyrate permease and related perm | 99.54 | |
| PF13520 | 426 | AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G | 99.5 | |
| COG0833 | 541 | LysP Amino acid transporters [Amino acid transport | 99.42 | |
| COG0531 | 466 | PotE Amino acid transporters [Amino acid transport | 99.41 | |
| KOG1286 | 554 | consensus Amino acid transporters [Amino acid tran | 99.35 | |
| KOG3832 | 319 | consensus Predicted amino acid transporter [Genera | 99.29 | |
| TIGR03428 | 475 | ureacarb_perm permease, urea carboxylase system. A | 99.29 | |
| PF00324 | 478 | AA_permease: Amino acid permease; InterPro: IPR004 | 99.18 | |
| PRK15238 | 496 | inner membrane transporter YjeM; Provisional | 99.13 | |
| TIGR00907 | 482 | 2A0304 amino acid permease (GABA permease). | 99.06 | |
| TIGR00910 | 507 | 2A0307_GadC glutamate:gamma-aminobutyrate antiport | 98.98 | |
| TIGR03813 | 474 | put_Glu_GABA_T putative glutamate/gamma-aminobutyr | 98.91 | |
| COG3949 | 349 | Uncharacterized membrane protein [Function unknown | 98.58 | |
| KOG1289 | 550 | consensus Amino acid transporters [Amino acid tran | 98.54 | |
| TIGR00800 | 442 | ncs1 NCS1 nucleoside transporter family. The NCS1 | 98.42 | |
| PRK11375 | 484 | allantoin permease; Provisional | 98.28 | |
| TIGR00813 | 407 | sss transporter, SSS family. have different number | 98.16 | |
| TIGR02119 | 471 | panF sodium/pantothenate symporter. Pantothenate ( | 98.15 | |
| PRK09442 | 483 | panF sodium/panthothenate symporter; Provisional | 98.13 | |
| TIGR00835 | 425 | agcS amino acid carrier protein. Members of the AG | 98.11 | |
| TIGR02358 | 386 | thia_cytX probable hydroxymethylpyrimidine transpo | 98.1 | |
| PF00474 | 406 | SSF: Sodium:solute symporter family; InterPro: IPR | 97.97 | |
| PRK12488 | 549 | acetate permease; Provisional | 97.96 | |
| PRK11017 | 404 | codB cytosine permease; Provisional | 97.93 | |
| COG1457 | 442 | CodB Purine-cytosine permease and related proteins | 97.92 | |
| PF02554 | 376 | CstA: Carbon starvation protein CstA; InterPro: IP | 97.9 | |
| PRK09395 | 551 | actP acetate permease; Provisional | 97.87 | |
| COG1953 | 497 | FUI1 Cytosine/uracil/thiamine/allantoin permeases | 97.81 | |
| TIGR00796 | 378 | livcs branched-chain amino acid uptake carrier. tr | 97.79 | |
| COG0591 | 493 | PutP Na+/proline symporter [Amino acid transport a | 97.79 | |
| TIGR02711 | 549 | symport_actP cation/acetate symporter ActP. Member | 97.73 | |
| KOG2083 | 643 | consensus Na+/K+ symporter [Inorganic ion transpor | 97.68 | |
| PF02133 | 440 | Transp_cyt_pur: Permease for cytosine/purines, ura | 97.54 | |
| PRK15419 | 502 | proline:sodium symporter PutP; Provisional | 97.51 | |
| TIGR03648 | 552 | Na_symport_lg probable sodium:solute symporter, VC | 97.47 | |
| TIGR02121 | 487 | Na_Pro_sym sodium/proline symporter. This family c | 97.38 | |
| PF01235 | 416 | Na_Ala_symp: Sodium:alanine symporter family; Inte | 97.3 | |
| COG1115 | 452 | AlsT Na+/alanine symporter [Amino acid transport a | 97.24 | |
| PRK15015 | 701 | carbon starvation protein A; Provisional | 97.01 | |
| COG1966 | 575 | CstA Carbon starvation protein, predicted membrane | 96.98 | |
| COG4147 | 529 | DhlC Predicted symporter [General function predict | 96.64 | |
| PRK10484 | 523 | putative transporter; Provisional | 96.43 | |
| COG0733 | 439 | Na+-dependent transporters of the SNF family [Gene | 96.41 | |
| TIGR00796 | 378 | livcs branched-chain amino acid uptake carrier. tr | 96.21 | |
| PF05525 | 427 | Branch_AA_trans: Branched-chain amino acid transpo | 96.11 | |
| PHA02764 | 399 | hypothetical protein; Provisional | 95.86 | |
| KOG1288 | 945 | consensus Amino acid transporters [Amino acid tran | 95.58 | |
| PF01566 | 358 | Nramp: Natural resistance-associated macrophage pr | 95.46 | |
| COG1114 | 431 | BrnQ Branched-chain amino acid permeases [Amino ac | 95.43 | |
| PRK00701 | 439 | manganese transport protein MntH; Reviewed | 95.37 | |
| PF05525 | 427 | Branch_AA_trans: Branched-chain amino acid transpo | 95.35 | |
| PF02028 | 485 | BCCT: BCCT family transporter; InterPro: IPR000060 | 94.55 | |
| PF00209 | 523 | SNF: Sodium:neurotransmitter symporter family; Int | 93.56 | |
| PRK15433 | 439 | branched-chain amino acid transport system 2 carri | 93.35 | |
| COG4145 | 473 | PanF Na+/panthothenate symporter [Coenzyme metabol | 92.08 | |
| KOG2082 | 1075 | consensus K+/Cl- cotransporter KCC1 and related tr | 91.49 | |
| PRK15433 | 439 | branched-chain amino acid transport system 2 carri | 89.81 | |
| KOG2466 | 572 | consensus Uridine permease/thiamine transporter/al | 89.74 | |
| KOG2349 | 585 | consensus Na+:iodide/myo-inositol/multivitamin sym | 86.44 | |
| PRK09928 | 679 | choline transport protein BetT; Provisional | 84.67 | |
| PRK03356 | 504 | L-carnitine/gamma-butyrobetaine antiporter; Provis | 83.6 | |
| COG1914 | 416 | MntH Mn2+ and Fe2+ transporters of the NRAMP famil | 82.33 | |
| PRK09950 | 506 | putative transporter; Provisional | 80.53 |
| >KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-47 Score=339.59 Aligned_cols=288 Identities=34% Similarity=0.585 Sum_probs=262.0
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 27 RVTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 27 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
+.++.+|..++..|+.++++|+|+|++|++|+++||+.|.+..++++.+++||++.+++|..++.+++++ ...+|++.
T Consensus 42 ~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~--~~~~y~~~ 119 (449)
T KOG1304|consen 42 DREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRG--PSLDYAET 119 (449)
T ss_pred cCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--ccccHHHH
Confidence 3466799999999999999999999999999999999999999999999999999999999999876553 34677766
Q ss_pred HH----------HhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhc--cCCchhHHHHHHHHHHHHHhhhhcC
Q 020421 107 GY----------KCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSY--TSLTYRSFIFLVVPVQILLSWINSL 174 (326)
Q Consensus 107 ~~----------~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~--~~~~~~~~~~i~~~~~~pl~~~~~l 174 (326)
++ +.+||++|.+++.++.++++|.|++|+++.++++.++++.. ...+.+.++++.++..++++++||+
T Consensus 120 ~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~L 199 (449)
T KOG1304|consen 120 AESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNL 199 (449)
T ss_pred HHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 65 45799999999999999999999999999999999999943 3567788888999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhcccchH
Q 020421 175 SALAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFS 254 (326)
Q Consensus 175 ~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~ 254 (326)
+.++.+|.+++++.++.++++.++.++.. .+.++.+.+.+ +.+++.++|+.+|||+|+.++.|++++||+|++++
T Consensus 200 k~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~----~~~~~~~~~~~-~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~ 274 (449)
T KOG1304|consen 200 KILSPFSLFANVFILVGLAIIMYYLVQDL----PPTSDLPAVTG-WSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFP 274 (449)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhcc----CCccccccccc-hhhhHHHHHHHHHHhccceEEEehhhcccChhhcC
Confidence 99999999999999999999999988863 46777777764 99999999999999999999999999999999999
Q ss_pred ---HHHHHHHHHHHHHHHHHHhHhhhhcCCCchhhHhhcCCCChHHHHHHHHHHHH----hhhhhcchhhhhhh
Q 020421 255 ---KLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQVISYVS----HVTYCTCSVLIRLR 321 (326)
Q Consensus 255 ---~~~~~~~~~~~~~y~~~~~~gy~~fG~~~~~~il~n~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~~ 321 (326)
+++..++.+++++|..+|++||++||+++++.|++|+|++++...+|+.+.+. +++++.++.++.++
T Consensus 275 g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~ 348 (449)
T KOG1304|consen 275 GPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEP 348 (449)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999866665 67788888877776
|
|
| >KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=317.49 Aligned_cols=293 Identities=22% Similarity=0.369 Sum_probs=257.2
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhH
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLG 107 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 107 (326)
.+++.|+++++++.++.++|.|+|+||+++++.||+.|++++++.++++.||..+|.+|.+..+..++ ++.++|.|++
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~--~r~~~Y~dl~ 111 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPG--KRRYRYPDLG 111 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--ccCCChHHHH
Confidence 46779999999999999999999999999999999999999999999999999999999999876655 4668999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhcc----CCchhHHHHHHHHHHHHHhhhhcCCchhhHHHH
Q 020421 108 YKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYT----SLTYRSFIFLVVPVQILLSWINSLSALAPFSIF 183 (326)
Q Consensus 108 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~----~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 183 (326)
+++||++++.++.+.+.+.++++|+.|.+..+|++..+++... ..+.+.|++++.++.+|++++||++.++++|..
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~ 191 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLV 191 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHH
Confidence 9999999999999999999999999999999999999998872 234578888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCCcccccccccccch-hhHHHHHHHhhccccchhchHhhhhcccchHHHHHHHHH
Q 020421 184 ADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGL-PFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFT 262 (326)
Q Consensus 184 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~ 262 (326)
+.+..+....+.+..+..+..+...+....+.. +.... ++++|++.|+|.||.++|+++.+||+|++|+|++..++.
T Consensus 192 ~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~--~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~ 269 (437)
T KOG1303|consen 192 GAVMSTLYAVILIVLGIADGVGFCAPSGGYLDL--GTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISYI 269 (437)
T ss_pred HHHHHHHHHHHHHHHhhccccccCCcccCcccC--CCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHHH
Confidence 999988888888877777654332232333322 22222 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhhcCCCchhhHhhcCC-CChHHHHHHHHHHHH----hhhhhcchhhhhhhhhc
Q 020421 263 GITLVYVMFGFFGFMAYGDDTKDIVTLNLP-KDWSSIAVQVISYVS----HVTYCTCSVLIRLRFCS 324 (326)
Q Consensus 263 ~~~~~y~~~~~~gy~~fG~~~~~~il~n~~-~~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~ 324 (326)
+++.+|+.+++.||++|||+++++++.|++ +.|+...+++++.++ +.+++.+.++..-....
T Consensus 270 ~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~ 336 (437)
T KOG1303|consen 270 IVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIG 336 (437)
T ss_pred HHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhc
Confidence 999999999999999999999999999995 678988898888888 56777777777665443
|
|
| >PTZ00206 amino acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=314.40 Aligned_cols=282 Identities=21% Similarity=0.216 Sum_probs=229.0
Q ss_pred CCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHH
Q 020421 30 GTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYK 109 (326)
Q Consensus 30 ~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~ 109 (326)
...+..++++|+.|+++|+|+|++|++|+++||+.|++++++++.++.|+.+++.++.++ ++..+|+|++++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~--------~~~~sY~~la~~ 129 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK--------TNIRTYEGVARV 129 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------CCCCCHHHHHHH
Confidence 456779999999999999999999999999999999999999999999999999998876 456699999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccC-------CchhH-HHHHHHHHHHHHhhhhcCCchhhHH
Q 020421 110 CMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTS-------LTYRS-FIFLVVPVQILLSWINSLSALAPFS 181 (326)
Q Consensus 110 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~-------~~~~~-~~~i~~~~~~pl~~~~~l~~l~~~s 181 (326)
++||++++++++.+.+.++|.|++|+++.+|.+..+++.... .+.+. +.++..++++|++++|++++++++|
T Consensus 130 ~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S 209 (467)
T PTZ00206 130 LLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVS 209 (467)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHH
Confidence 999999999999999999999999999999999998864210 01122 2236677889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcC-CC-------CCcccccccccccchhhHHHHHHHhhccccchhchHhhhhc--cc
Q 020421 182 IFADICNVLAMTLVVKEDVQKILGG-EF-------SFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRE--RG 251 (326)
Q Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~--p~ 251 (326)
.+++.+.++.++.+++....+..++ .+ +.++.+.+.. ..+.+.++++++|||.||.+++++++|||| |+
T Consensus 210 ~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~ 288 (467)
T PTZ00206 210 TIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNS-GNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVG 288 (467)
T ss_pred HHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecC-chHHHhhhhHHHhhhhhhhhhHHHHHhhcccchh
Confidence 9999887777777666554432111 10 1112223321 346889999999999999999999999998 57
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHhhhhcCCCchhhHhhcC-CC-ChHHHHHHHHHHHH-hhhhhcchhhhhh
Q 020421 252 RFSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNL-PK-DWSSIAVQVISYVS-HVTYCTCSVLIRL 320 (326)
Q Consensus 252 ~~~~~~~~~~~~~~~~y~~~~~~gy~~fG~~~~~~il~n~-~~-~~~~~~~~~~~~i~-~~~~~~~~~~~~~ 320 (326)
|+.+++..++.+++++|..+|++||++||+++++++++|+ |. |....++++++.+. ...|+...++.|.
T Consensus 289 ~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~ 360 (467)
T PTZ00206 289 KFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRN 360 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHH
Confidence 8999999999999999999999999999999999999999 53 56666666656555 3555555555443
|
|
| >PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=309.89 Aligned_cols=291 Identities=26% Similarity=0.477 Sum_probs=244.9
Q ss_pred CCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHH
Q 020421 30 GTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYK 109 (326)
Q Consensus 30 ~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~ 109 (326)
++.|+++++++++|+++|+|+|++|++|+++||+.|++++++.+.++.++.+++.++.++.+++ ++..+|+|++++
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~----~~~~~y~~l~~~ 76 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNG----TGRRSYGDLARR 76 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccc----cccccccccccc
Confidence 5789999999999999999999999999999999999999999999999999999999987521 578899999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhcc---CCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHH
Q 020421 110 CMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYT---SLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADI 186 (326)
Q Consensus 110 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~---~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 186 (326)
++||++++++++++.+.++|.+++|.+..+|.+.++++... ..+...+.+++.++++|++++|+++++++.+.++.+
T Consensus 77 ~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~ 156 (409)
T PF01490_consen 77 AFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLF 156 (409)
T ss_pred cccccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhh
Confidence 99999999999999999999999999999999999998752 245556666888999999999999999999999988
Q ss_pred HHHHHHHHHHHhhhhhhhcCCCCCccccc-ccccccchhhHHHHHHHhhccccchhchHhhhhcccchH---HHHHHHHH
Q 020421 187 CNVLAMTLVVKEDVQKILGGEFSFSDRKA-VSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFS---KLLAQAFT 262 (326)
Q Consensus 187 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~---~~~~~~~~ 262 (326)
+.+..+.+.+.........+..+.++.+. ...++.+++.++++++|||.||+++|++++|||+|+|++ +++.+++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~ 236 (409)
T PF01490_consen 157 SIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI 236 (409)
T ss_pred ccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence 88765333333322221111111122211 122577999999999999999999999999999998766 99999999
Q ss_pred HHHHHHHHHHhHhhhhcCCCchhhHhhcCCCC-hHHHHHHHHHHHH-hhhhhcchhhhhhhhhc
Q 020421 263 GITLVYVMFGFFGFMAYGDDTKDIVTLNLPKD-WSSIAVQVISYVS-HVTYCTCSVLIRLRFCS 324 (326)
Q Consensus 263 ~~~~~y~~~~~~gy~~fG~~~~~~il~n~~~~-~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~ 324 (326)
+++++|..+|+.||++||+++++++++|+|++ +...++++++.++ ...+|+..++.+..+.+
T Consensus 237 ~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~ 300 (409)
T PF01490_consen 237 ICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLEN 300 (409)
T ss_pred hhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhh
Confidence 99999999999999999999999999999866 5888889888888 46666766666665443
|
UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified. |
| >PLN03074 auxin influx permease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=277.45 Aligned_cols=283 Identities=14% Similarity=0.109 Sum_probs=228.5
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC-----CcCcc
Q 020421 29 TGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSST-----ETKTY 103 (326)
Q Consensus 29 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~y 103 (326)
.++.|..++.+++.++.+|.|+|+||++|+++||+.|++.+++.++++.||.+++.++..++..+.+++. ...+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999998877655433211 12378
Q ss_pred hhhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHH
Q 020421 104 GDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIF 183 (326)
Q Consensus 104 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 183 (326)
.|+++..+||+++.+..+...+++++.|+.|++..++.+..+... .+.+.|.+++.++.+|++++|++++++++|.+
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~---~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~i 199 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDN---LDKRTWTYIFGACCATTVFIPSFHNYRIWSFL 199 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCC---cCCCeEEeehHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999999999999999999999999988887776443 57788888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhcccchHHHHHHHHHH
Q 020421 184 ADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTG 263 (326)
Q Consensus 184 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~ 263 (326)
+..+.+.+...++...+.... .+..++. .+.++..++.++++++|+|+||.++|+++++||||+|++++...+...
T Consensus 200 g~~~tl~~av~i~i~~i~~~~--~~~~~~~--~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~~~~ 275 (473)
T PLN03074 200 GLLMTTYTAWYMTIAALSHGQ--VEGVKHS--GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLAATLY 275 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhcC--CCCCCCC--CchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccchHHHHHHH
Confidence 988766655555544443311 1111111 112466777788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhhcCCCch--hhHhhcCCCChHHHHHHHHHHHH----hhhhhcchhhh
Q 020421 264 ITLVYVMFGFFGFMAYGDDTK--DIVTLNLPKDWSSIAVQVISYVS----HVTYCTCSVLI 318 (326)
Q Consensus 264 ~~~~y~~~~~~gy~~fG~~~~--~~il~n~~~~~~~~~~~~~~~i~----~~~~~~~~~~~ 318 (326)
++.+|+.+++.||++|||+++ ++.+.|+|++....++++...++ +.+++.+.+..
T Consensus 276 v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~~~~i~~~~sy~l~~~p~~~~ 336 (473)
T PLN03074 276 VLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVILMLIHQFITFGFACTPLYFV 336 (473)
T ss_pred HHHHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999976 45677798765566666655554 55555555444
|
|
| >KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=251.59 Aligned_cols=284 Identities=24% Similarity=0.372 Sum_probs=237.5
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhH
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLG 107 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 107 (326)
.+++.|.+.+++++.|+++|+|++++|++|++.|.+.|++++++.+.++.++.+++.++.++.+ ..+|++++
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~--------~~ty~~l~ 73 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSG--------ERTYSSLG 73 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC--------CCCHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999963 33999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhcc--CC-----chhH--HHHHHHHHHHHHhhhhcCCchh
Q 020421 108 YKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYT--SL-----TYRS--FIFLVVPVQILLSWINSLSALA 178 (326)
Q Consensus 108 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~--~~-----~~~~--~~~i~~~~~~pl~~~~~l~~l~ 178 (326)
+..+|+.++....+.......| +++|++..+|.+..+..... +. ..+. +.+....++.|+++.|++++++
T Consensus 74 ~~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk 152 (411)
T KOG1305|consen 74 DLIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLK 152 (411)
T ss_pred HHHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHH
Confidence 9999999977776666666666 79999999999997665541 11 1222 3558888889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcccccccc--cccchhhHHHHHHHhhccccchhchHhhhhcc--cchH
Q 020421 179 PFSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSS--NIRGLPFAGGMAVFCFEGFGMTFALESSMRER--GRFS 254 (326)
Q Consensus 179 ~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p--~~~~ 254 (326)
+.|.++..+++..+.++++..+.... .........+. .+++.+.++++++|+|.||.++.|+++||||| +|++
T Consensus 153 ~tS~~s~~~~~~fv~~vv~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~ 229 (411)
T KOG1305|consen 153 YTSALSLASVVYFVVLVVYKYFQGPC---ALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQ 229 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc---ccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHH
Confidence 99999999999998888888777432 01111111111 23689999999999999999999999999998 4599
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhcCCCchhhHhhcCCCChH-------HHHHHHHHHHH-hhhhhcchhhhhhhhh
Q 020421 255 KLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWS-------SIAVQVISYVS-HVTYCTCSVLIRLRFC 323 (326)
Q Consensus 255 ~~~~~~~~~~~~~y~~~~~~gy~~fG~~~~~~il~n~~~~~~-------~~~~~~~~~i~-~~~~~~~~~~~~~~~~ 323 (326)
++...+...+.++|...|.+||++||+++.+|++.++|++-. ...+|....++ .+.+|+..++.|.++.
T Consensus 230 ~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~ 306 (411)
T KOG1305|consen 230 RVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLD 306 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 999999999999999999999999999999999999986522 36788877777 6888999999988743
|
|
| >KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9e-32 Score=229.81 Aligned_cols=287 Identities=22% Similarity=0.318 Sum_probs=250.9
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 27 RVTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 27 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
+.+.+++.+|+.++..|++-|.=+++||++..-.||+. +..++.++.++.||..++++|..+-+.+.+.-+.+.+|-++
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw~-i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaI 190 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYWS-IGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAI 190 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchhH-HHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHH
Confidence 34568999999999999999999999999999988866 99999999999999999999998865432211467899999
Q ss_pred HHHhhhhh-hHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHH
Q 020421 107 GYKCMGKA-GRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFAD 185 (326)
Q Consensus 107 ~~~~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 185 (326)
+..+++|. |.+.+.+...+-+..+|+.|++..+|.+..-++.. +.+.+.|+++..+.++|.+++|+++-.+.+|.+..
T Consensus 191 A~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct 269 (524)
T KOG4303|consen 191 ADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-SVDKASWMMITSASLLPCSFLKDLKIVSRLSFFCT 269 (524)
T ss_pred HHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-CccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999886 66899999999999999999999999999999864 46889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhcccchHHHHHHHHHHHH
Q 020421 186 ICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGIT 265 (326)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~ 265 (326)
++-++.-++++.++.... ++..++...- .-|..+++..+|+++|+|..|..+|+++..|++|.++...+.|+-+.++
T Consensus 270 ~sH~viN~i~v~YCLs~~--~dW~wskv~F-sidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHIAAa 346 (524)
T KOG4303|consen 270 ISHLVINLIMVLYCLSFV--SDWSWSKVTF-SIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHIAAA 346 (524)
T ss_pred HHHHHHHHHHHHHHHHHh--hhccceeEEE-EEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHHHHH
Confidence 998888888887776653 2334444443 2267889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhhhcCCCchhhHhhcCCCChHHHHHHHHHHHH-hhhhhcchhhh
Q 020421 266 LVYVMFGFFGFMAYGDDTKDIVTLNLPKDWSSIAVQVISYVS-HVTYCTCSVLI 318 (326)
Q Consensus 266 ~~y~~~~~~gy~~fG~~~~~~il~n~~~~~~~~~~~~~~~i~-~~~~~~~~~~~ 318 (326)
++-..+|.+||++||+++++.|++|+|+.....++++.+++. ++.||.|.+..
T Consensus 347 VfK~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAA 400 (524)
T KOG4303|consen 347 VFKVVFGMLGFLTFGELTQEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAA 400 (524)
T ss_pred HHHHHHHHheeeeechhhHHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHH
Confidence 999999999999999999999999999878888899888888 56666665543
|
|
| >COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=227.66 Aligned_cols=261 Identities=25% Similarity=0.245 Sum_probs=221.1
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 27 RVTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 27 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
+.+++.+..++++++.+++||+|+|++|++++..|++.+++++++++.+++++..++.|+..+.+. +..++.++
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~------~~~~~~~~ 77 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN------GKASITSL 77 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CcccHHHH
Confidence 356778999999999999999999999999999999999999999999999999999999999852 22599999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCC---chhHHHHHHHHHHHHHhhhhcCCchhhHHHH
Q 020421 107 GYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSL---TYRSFIFLVVPVQILLSWINSLSALAPFSIF 183 (326)
Q Consensus 107 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~---~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 183 (326)
+++.+||+++.+.++.+.+.+++.+.+|.+..++.+++.+++..+. +++...+++..++.++++.++...++..+.+
T Consensus 78 ~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l 157 (415)
T COG0814 78 VEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLL 157 (415)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999985333 3344445777777889999999999999998
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCCCCCcccccc-cccccchhhHHHHHHHhhccccchhchHhhhhcc-cc-hHHHHHHH
Q 020421 184 ADICNVLAMTLVVKEDVQKILGGEFSFSDRKAV-SSNIRGLPFAGGMAVFCFEGFGMTFALESSMRER-GR-FSKLLAQA 260 (326)
Q Consensus 184 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~-~~~~~~~~ 260 (326)
....+...++...+...... .......+.. +..+..+..++++++|||.||+++|++.++||++ +| .+|+...+
T Consensus 158 ~~~~v~~~~~l~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~ 234 (415)
T COG0814 158 VFGKVIYLVLLVVYLIPHWN---PANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIG 234 (415)
T ss_pred HHHHHHHHHHHHHHHhcccC---HHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHH
Confidence 87777766666555533310 0011111111 2368889999999999999999999999999986 34 99999999
Q ss_pred HHHHHHHHHHHHhHhhhhcCCCchhhHhhcCCCChH
Q 020421 261 FTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKDWS 296 (326)
Q Consensus 261 ~~~~~~~y~~~~~~gy~~fG~~~~~~il~n~~~~~~ 296 (326)
..+..++|+.+++.+|..+|+++.++++++.+++..
T Consensus 235 ~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~ 270 (415)
T COG0814 235 SLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNIS 270 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHH
Confidence 999999999999999999999999999999986533
|
|
| >PRK10483 tryptophan permease; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-20 Score=168.09 Aligned_cols=285 Identities=13% Similarity=0.092 Sum_probs=200.7
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhH
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLG 107 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 107 (326)
++++.+...+.+.+.+++||+|+|+||.+.++.|+.++.+++++++.+..++..++.|+..+. ++..++..++
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~-------~~g~~~~tma 79 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNY-------RIGSSFDTIT 79 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCCHHHHH
Confidence 466789999999999999999999999999999999999999999999999999999998887 4567899999
Q ss_pred HHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCC--chhHHHHHHHHHHHHHhhhhcCCchhhHHHHHH
Q 020421 108 YKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSL--TYRSFIFLVVPVQILLSWINSLSALAPFSIFAD 185 (326)
Q Consensus 108 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~--~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 185 (326)
++.+||+|+.+.++++.+..++.+.+|+.-.++.+++.+++. +. +...-.+++.++.-...+. ..+...+++-.-.
T Consensus 80 ~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~-~~~i~~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~ 157 (414)
T PRK10483 80 KDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM-SLNVPARAAGFGFALLVAFVVWL-STKAVSRMTAIVL 157 (414)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc-CCCCcHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999763 22 3222222333333333332 4455556665555
Q ss_pred HHHHHHHHHHHHhhhhhhhcCCCCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhc-ccchHHHHHHHHHHH
Q 020421 186 ICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRE-RGRFSKLLAQAFTGI 264 (326)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~~~~~~ 264 (326)
..+++.++..+.....+...+.-........ ..+...+.+.++.++||..|+++|++.+.+++ ++|.+|++..+..+.
T Consensus 158 ~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~-~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Ip 236 (414)
T PRK10483 158 GAKVITFFLTFGSLLGHVQPATLFNVAESNA-SYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMA 236 (414)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHhccccccc-hhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 5555554444444333210000000000111 12456889999999999999999999999886 688999999999999
Q ss_pred HHHHHHHHhHhhhhcC-----------CCchh--hHhhc-CCCChHHHHHHHHHHHHhhhhhcchhhhhhhh
Q 020421 265 TLVYVMFGFFGFMAYG-----------DDTKD--IVTLN-LPKDWSSIAVQVISYVSHVTYCTCSVLIRLRF 322 (326)
Q Consensus 265 ~~~y~~~~~~gy~~fG-----------~~~~~--~il~n-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 322 (326)
.++|+.--..+....+ ++.+. ..+.+ .++.+...+..+.-.+.+...+.....-..++
T Consensus 237 lv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~ 308 (414)
T PRK10483 237 LALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDY 308 (414)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999986555544433 22211 11111 23345555555555555555555544444443
|
|
| >PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.3e-20 Score=167.28 Aligned_cols=281 Identities=18% Similarity=0.151 Sum_probs=201.9
Q ss_pred CCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHh
Q 020421 31 TASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKC 110 (326)
Q Consensus 31 ~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~ 110 (326)
+.+.+++++.+.++.||+|+|+||.+.+..|.+++.+.+++++..++++..++.|...+. ++..++.+++++.
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~-------~~~~~~~~~a~~~ 74 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNT-------PEGSSLTSMAEKY 74 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCCHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999987 4677999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccC--CchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHH
Q 020421 111 MGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTS--LTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICN 188 (326)
Q Consensus 111 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~--~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 188 (326)
+||+++.+..+.+.+..++.+.+|....++.++++++...+ .+++....++.++.-.+... +-+...+++..-+...
T Consensus 75 lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~ 153 (394)
T PF03222_consen 75 LGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGM 153 (394)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988632 22222222333332222222 3335556666555555
Q ss_pred HHHHHHHHHhhhhhhhcCCCCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhc-ccchHHHHHHHHHHHHHH
Q 020421 189 VLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRE-RGRFSKLLAQAFTGITLV 267 (326)
Q Consensus 189 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~~~~~~~~~ 267 (326)
+..+.......+.+. + .+...+.+..+.++...+.++++.++||..|.++|++.+.+++ ++|.+|++.++..+..++
T Consensus 154 i~~~~~l~~~~~p~~-~-~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~ 231 (394)
T PF03222_consen 154 IISFIILVVYLIPHW-N-PSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVM 231 (394)
T ss_pred HHHHHHHHHHHhhhc-C-HHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 555555554544432 1 1111111111236888999999999999999999999999985 688999999999999999
Q ss_pred HHHHHhHhhh-----------hcCCCch--hhHhhcC-CCChHHHHHHHHHHHHhhhhhcchhhhhhh
Q 020421 268 YVMFGFFGFM-----------AYGDDTK--DIVTLNL-PKDWSSIAVQVISYVSHVTYCTCSVLIRLR 321 (326)
Q Consensus 268 y~~~~~~gy~-----------~fG~~~~--~~il~n~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 321 (326)
|+..-..... .-|++.. ...+.+. ++.+...+..+.-.+.....+....-...+
T Consensus 232 yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d 299 (394)
T PF03222_consen 232 YLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFD 299 (394)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8876443332 1222222 1233333 345566666666666655555544444333
|
A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region. |
| >TIGR00837 araaP aromatic amino acid transport protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-20 Score=170.00 Aligned_cols=237 Identities=15% Similarity=0.101 Sum_probs=183.1
Q ss_pred HHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHhhhhhhHH
Q 020421 38 LGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRF 117 (326)
Q Consensus 38 ~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~ 117 (326)
+...++++||+|++++|..+++.|+..+++.+++.+..+.++..++.|+..+. ++..++.+++++++||++++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~-------p~~~~~~~~~~~~~G~~~g~ 75 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTY-------PGGASFNTIAKDLLGKTGNI 75 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCCHHHHHHHHhCHHHHH
Confidence 44678999999999999999999999999999999999999999999999886 35668999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCC-chhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHHH
Q 020421 118 LTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSL-TYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVV 196 (326)
Q Consensus 118 ~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~-~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~ 196 (326)
+..+..++.++..+.+|....++.+..++++.... .++.+..+...+++.....++.+...+++.+.+...+..+..++
T Consensus 76 ~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 76 IAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988754221 12333333333334445566788888888888777766665555
Q ss_pred HhhhhhhhcCCCCCcccccccccccchhhHHHHHHHhhccccchhchHhhhh-cccchHHHHHHHHHHHHHHHHHHHhHh
Q 020421 197 KEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMR-ERGRFSKLLAQAFTGITLVYVMFGFFG 275 (326)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~-~p~~~~~~~~~~~~~~~~~y~~~~~~g 275 (326)
.....+...+ ...+..+ .+.++.++..+++...++|.+|.+++++.++++ |+||.+|+...+..+++++|+.+....
T Consensus 156 i~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~ 233 (381)
T TIGR00837 156 SGLLPHVKGD-LLLDVAL-DTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLAT 233 (381)
T ss_pred HHHHhhccHH-HHhcCcc-ccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444432110 0001000 012466788999999999999989999999997 567799999999999999999998777
Q ss_pred hhhcCCCc
Q 020421 276 FMAYGDDT 283 (326)
Q Consensus 276 y~~fG~~~ 283 (326)
...++.+.
T Consensus 234 ~g~~~~~~ 241 (381)
T TIGR00837 234 MGNLPRSE 241 (381)
T ss_pred hCCCCHHH
Confidence 76665443
|
aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli. |
| >PRK09664 tryptophan permease TnaB; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-19 Score=164.23 Aligned_cols=282 Identities=13% Similarity=0.104 Sum_probs=193.3
Q ss_pred CCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHH
Q 020421 30 GTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYK 109 (326)
Q Consensus 30 ~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~ 109 (326)
+|.+...+.+.+.+++||+|+|+||.+.++.|+.++.+++++++.+..+|..++.|+..+. ++..++..++|+
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~-------~~g~~l~tma~~ 79 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNY-------PVGSSFNTITKD 79 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCCHHHHHHH
Confidence 3447788999999999999999999999999999999999999999999999999999887 467789999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccC--CchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHH
Q 020421 110 CMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTS--LTYRSFIFLVVPVQILLSWINSLSALAPFSIFADIC 187 (326)
Q Consensus 110 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~--~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 187 (326)
.+||+|+.+.+++..+..++.+.+|+.-.++.+++.+++..+ .+.+...+++.++.-...+. ..+...+++-.-...
T Consensus 80 ~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l~~~ 158 (415)
T PRK09664 80 LIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWI-SSLAASRITSLFLGL 158 (415)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999875322 23332222333333333322 335555555544444
Q ss_pred HHHHHHHHHHhhhhhhhcCCCCCcccccccc---cccchhhHHHHHHHhhccccchhchHhhhhc-ccchHHHHHHHHHH
Q 020421 188 NVLAMTLVVKEDVQKILGGEFSFSDRKAVSS---NIRGLPFAGGMAVFCFEGFGMTFALESSMRE-RGRFSKLLAQAFTG 263 (326)
Q Consensus 188 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~~~~~ 263 (326)
+++.++..+.....+... ..-.+.+.... .+..++.+++++++||..|+++|++.+.+++ ++|.+|++..+..+
T Consensus 159 ~ii~f~~~~~~l~~~i~~--~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~I 236 (415)
T PRK09664 159 KIISFVIVFGSFFFQVDY--SILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLL 236 (415)
T ss_pred HHHHHHHHHHHHhhcccH--HHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHH
Confidence 444444433333222100 00011111100 1335788999999999999999999999986 57899999999888
Q ss_pred HHHHHHHHHhH--h---------hhhcCCCchhh---HhhcCCCChHHHHHHHHHHHHhhhhhcchhhhhhh
Q 020421 264 ITLVYVMFGFF--G---------FMAYGDDTKDI---VTLNLPKDWSSIAVQVISYVSHVTYCTCSVLIRLR 321 (326)
Q Consensus 264 ~~~~y~~~~~~--g---------y~~fG~~~~~~---il~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 321 (326)
..++|+.-=.. | ...-|++.... ...+.++.+...+..+...+.+...+.....-..+
T Consensus 237 pLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D 308 (415)
T PRK09664 237 ALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFD 308 (415)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888554332 2 12233333331 22233445666666665555555555544443333
|
|
| >PRK15132 tyrosine transporter TyrP; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-19 Score=161.57 Aligned_cols=276 Identities=15% Similarity=0.140 Sum_probs=192.7
Q ss_pred CHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHhhh
Q 020421 33 SAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMG 112 (326)
Q Consensus 33 s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G 112 (326)
+...+.+.+.++.||+|+|+||.+....|++.+.+++++++.+..|+.+++.|+..+. ++..++.+++++.+|
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~-------~~~~~~~~~a~~~LG 76 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV-------PADTGLGTLAKRYLG 76 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCCCCHHHHHHHHhC
Confidence 6788999999999999999999999999999999999999999999999999976554 355689999999999
Q ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhcc--CCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHH
Q 020421 113 KAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYT--SLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVL 190 (326)
Q Consensus 113 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~--~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 190 (326)
|+++.+..+.+.+..+..+.+|....++.+.+.++++. +.+.....+++.++ ..+....+.+...+++-.-...+++
T Consensus 77 ~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~-~~~iv~~g~~~v~~~n~~L~~~~ii 155 (403)
T PRK15132 77 RYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLV-AGGVVCVGTSSVDLFNRFLFSAKII 155 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888876532 23333333322222 2222222334444555444444444
Q ss_pred HHHHHHHhhhhhhhcCCCCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhc-ccchHHHHHHHHHHHHHHHH
Q 020421 191 AMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRE-RGRFSKLLAQAFTGITLVYV 269 (326)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~-p~~~~~~~~~~~~~~~~~y~ 269 (326)
.++......+.+. + .....+.+ + +..-.+.+++++++||..|+++|++.+.+++ ++|.+|++..+..+..++|+
T Consensus 156 ~~~~~~~~l~p~~-~-~~~L~~~~-~--~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl 230 (403)
T PRK15132 156 FLVVMLALMMPHI-H-KVNLLTLP-L--QQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYI 230 (403)
T ss_pred HHHHHHHHHHHhc-C-HHHHhcCC-c--cccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4333333332221 1 00111111 1 1224889999999999999999999999986 58899999999999999999
Q ss_pred HHHhHhhhhcCCCch----------hhHhhcC----CCChHHHHHHHHHHHHhhhhhcchhhhhhh
Q 020421 270 MFGFFGFMAYGDDTK----------DIVTLNL----PKDWSSIAVQVISYVSHVTYCTCSVLIRLR 321 (326)
Q Consensus 270 ~~~~~gy~~fG~~~~----------~~il~n~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 321 (326)
.--..+...-+.+.- ++++..+ ++.+...++.+.-.+.....+.....-..+
T Consensus 231 ~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d 296 (403)
T PRK15132 231 FWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFD 296 (403)
T ss_pred HHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988877776654421 1233332 334555566655555555554444433333
|
|
| >TIGR00814 stp serine transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-17 Score=150.97 Aligned_cols=241 Identities=15% Similarity=0.071 Sum_probs=182.7
Q ss_pred HHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHhhhhh
Q 020421 35 AQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKA 114 (326)
Q Consensus 35 ~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~ 114 (326)
..-...+.++++|+|+|.||....+.||+..++..+++..+.+++...+.|.....+ .+..++.|++++.|||+
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~------~p~~~i~~~~~~~fGk~ 79 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK------NPCEDITEVVEEHFGKN 79 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCCHHHHHHHHcCHH
Confidence 456788999999999999999999999999999999999999999999988865542 24679999999999999
Q ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCch-hHHH-HHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHH
Q 020421 115 GRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTY-RSFI-FLVVPVQILLSWINSLSALAPFSIFADICNVLAM 192 (326)
Q Consensus 115 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~-~~~~-~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 192 (326)
++.+..+..++..+..+.+|....++.+.+++.+....+. .++. .+..++........+.+...+++.+.....+..+
T Consensus 80 ~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l 159 (397)
T TIGR00814 80 WGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLIL 159 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988876532222 2322 2333333344555577777888877766555555
Q ss_pred HHHHHhhhhhhhcCCCCCcccccccccccchhhHHHHHHHhhccccchhchHh----hhh--c--ccchHHHHHHHHHHH
Q 020421 193 TLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALES----SMR--E--RGRFSKLLAQAFTGI 264 (326)
Q Consensus 193 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~----~m~--~--p~~~~~~~~~~~~~~ 264 (326)
..+....+.+. + .+.....|...+.+.++..+.+..++||.+|++++++.. +.+ | ++|.+|+...+..+.
T Consensus 160 ~~l~~~lip~~-~-~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~ 237 (397)
T TIGR00814 160 VLLSLYLIPHW-N-GANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLIL 237 (397)
T ss_pred HHHHHHHHHHc-C-HHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHH
Confidence 55555544432 1 111111121112367799999999999999999999973 344 2 466889999999999
Q ss_pred HHHHHHHHhHhhhhcCCCc
Q 020421 265 TLVYVMFGFFGFMAYGDDT 283 (326)
Q Consensus 265 ~~~y~~~~~~gy~~fG~~~ 283 (326)
.++|+..-+.+....+++.
T Consensus 238 ~~~y~~~~~s~~~~l~~~~ 256 (397)
T TIGR00814 238 VATVMFFVFSCVLSLSPAE 256 (397)
T ss_pred HHHHHHHHHHHhccCCHHH
Confidence 9999999999998887655
|
The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli. |
| >PRK13629 threonine/serine transporter TdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-17 Score=149.40 Aligned_cols=241 Identities=14% Similarity=0.176 Sum_probs=176.6
Q ss_pred HHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHhhhhhhH
Q 020421 37 TLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGR 116 (326)
Q Consensus 37 ~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~ 116 (326)
....+.++.||+|+|+||......|.+.+++.+++++.+++++...+.|...+.+ ++..++.+++++.+||+++
T Consensus 24 W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~------~~~~~i~~v~~~~lG~~g~ 97 (443)
T PRK13629 24 WTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS------NPSGNITETVEEHFGKTGG 97 (443)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------CCCCCHHHHHHHHcChhHH
Confidence 3489999999999999999999999999999999999999999999999887763 3567999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCC-c-hhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHH
Q 020421 117 FLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSL-T-YRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTL 194 (326)
Q Consensus 117 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~-~-~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~ 194 (326)
.+..+.+.+..+..+.+|...+.+.+++.+.+..+. + ++.+.-+.+.+.+......+-+..-+++..-+...+..++.
T Consensus 98 ~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~ 177 (443)
T PRK13629 98 VVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVL 177 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998876554222 1 23333333333333333334455556665555555554444
Q ss_pred HHHhhhhhhhcC---CCCCccccccc--ccccchhhHHHHHHHhhccccchhchHhh----hh-----c--ccchHHHHH
Q 020421 195 VVKEDVQKILGG---EFSFSDRKAVS--SNIRGLPFAGGMAVFCFEGFGMTFALESS----MR-----E--RGRFSKLLA 258 (326)
Q Consensus 195 i~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~faf~~~~~i~~i~~~----m~-----~--p~~~~~~~~ 258 (326)
...+.+.+...+ ..+.+..+... .....+..+++++++||..|+++|++... .+ | ++|.+|+..
T Consensus 178 l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~ 257 (443)
T PRK13629 178 ISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIIS 257 (443)
T ss_pred HHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 444444432110 01110001110 01234888999999999999999999887 43 3 467889999
Q ss_pred HHHHHHHHHHHHHHhHhhhhcCCCc
Q 020421 259 QAFTGITLVYVMFGFFGFMAYGDDT 283 (326)
Q Consensus 259 ~~~~~~~~~y~~~~~~gy~~fG~~~ 283 (326)
.+..+..++|+...+.+....+++.
T Consensus 258 ~gs~i~lv~y~fwv~S~~gsLs~~~ 282 (443)
T PRK13629 258 RASMLMVAVVMFFAFSCLFTLSPQN 282 (443)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 9999999999999998888887554
|
|
| >PRK10435 cadB lysine/cadaverine antiporter; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-15 Score=139.33 Aligned_cols=240 Identities=9% Similarity=0.032 Sum_probs=162.9
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhH
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLG 107 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 107 (326)
++++.+.++.+...++++||+|++.+|...++.|.. .+...+++++........+.|.....|.. . ...+.+
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~----G---G~y~y~ 74 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQ----G---GPIAYA 74 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC----C---ChhHHH
Confidence 577899999999999999999999999999888764 57778888888888888888888887542 2 333446
Q ss_pred HHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHH-HHHHHHHHHhhhhcCCchhhHHHHHHH
Q 020421 108 YKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIF-LVVPVQILLSWINSLSALAPFSIFADI 186 (326)
Q Consensus 108 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~~ 186 (326)
++ +||...+...+..+........++.+...+++..+++...+ +.....+ +..+..+.+...++.+...+++.+..+
T Consensus 75 ~~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~-~~~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~ 152 (435)
T PRK10435 75 GE-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLND-PIPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLV 152 (435)
T ss_pred HH-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC-hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 77 79999999988877655555556666666777777664211 1111111 222222334455566666666665554
Q ss_pred HHHHHHHHHHHhhhhhhhcCC--CCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhccc-chHHHHHHHHHH
Q 020421 187 CNVLAMTLVVKEDVQKILGGE--FSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERG-RFSKLLAQAFTG 263 (326)
Q Consensus 187 ~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~ 263 (326)
..++.+...+.....+...+. .++.. ..+.++.++..++....|+|.|.+......+|+|||+ +.||++..+..+
T Consensus 153 ~~li~~~~~~i~g~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~i 230 (435)
T PRK10435 153 LVLIPVVGTAIVGWHWFDAATYAANWNT--SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGL 230 (435)
T ss_pred HHHHHHHHHHHHHHHHcCHHhhcccccC--CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHH
Confidence 444333322222222110000 01111 1112467888999999999999999999999999995 599999999999
Q ss_pred HHHHHHHHHhHhhhhc
Q 020421 264 ITLVYVMFGFFGFMAY 279 (326)
Q Consensus 264 ~~~~y~~~~~~gy~~f 279 (326)
+.++|+...+......
T Consensus 231 v~ilYil~~~~~~~~~ 246 (435)
T PRK10435 231 AGIIYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999887655444
|
|
| >PRK15049 L-asparagine permease; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-14 Score=138.65 Aligned_cols=266 Identities=13% Similarity=0.131 Sum_probs=170.6
Q ss_pred CCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCHHHHHHHHHHhhhhhhcchhHH-HHHhhcHhhHHHHHHHHHHHHHHHH
Q 020421 2 MGREEGGENHMSNEIENPLLPKSSGRVTGTASAAQTLGNIIVSIVGTGVLGLPF-AFRVAGWLAGCLGVMIAGLSTYYCM 80 (326)
Q Consensus 2 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~LP~-~~~~~G~~~g~i~~i~~~~~~~~~~ 80 (326)
|+++|.+.+|++.-.++-..++++ +.+++.+.++..+..++.+||+|++..|. +...+|. .+++..++++++.....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~-~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~ 78 (499)
T PRK15049 1 MSKHDTDTSDQHAAKRRWLNAHEE-GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFIL 78 (499)
T ss_pred CCcccCCcccccchhcccccCCch-hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHH
Confidence 455665555554444444333332 36788999999999999999999998886 6667776 55788899999999999
Q ss_pred HHHHHHHHHhccccCCCCCcCcchhhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHH-
Q 020421 81 LLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIF- 159 (326)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~- 159 (326)
..+.|....+| ......+.+++.+||+..+++.+..++.............+..+..+ +.. + ....|..
T Consensus 79 ~slaELas~~P-------~aGg~y~y~~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~-~-~~~~~~~~ 148 (499)
T PRK15049 79 RALGELVLHRP-------SSGSFVSYAREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAF-G-GVPQWVFA 148 (499)
T ss_pred HHHHHHHHhCC-------CCCCHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC-C-CCcHHHHH
Confidence 99999998875 44455666899999999999999888876554444444444444322 211 1 1223332
Q ss_pred HHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCC----C--C----cccccccccccchhhHHHH
Q 020421 160 LVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILGGEF----S--F----SDRKAVSSNIRGLPFAGGM 229 (326)
Q Consensus 160 i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~----~--~----~~~~~~~~~~~~~~~~~~~ 229 (326)
+..++++.+......+...+++....+..+..++.++..++.....+.. . . ++...++.++.++..++..
T Consensus 149 ~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~ 228 (499)
T PRK15049 149 LAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQG 228 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHH
Confidence 2223333344455666666666655544433333322222211111000 0 0 0111122223445566677
Q ss_pred HHHhhccccchhchHhhhhcccc-hHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 020421 230 AVFCFEGFGMTFALESSMRERGR-FSKLLAQAFTGITLVYVMFGFFGFMAY 279 (326)
Q Consensus 230 ~~faf~~~~~i~~i~~~m~~p~~-~~~~~~~~~~~~~~~y~~~~~~gy~~f 279 (326)
.+|+|.|.+.+....+|+|||+| .||++..++..+.++|+..........
T Consensus 229 ~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~ 279 (499)
T PRK15049 229 VVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLL 279 (499)
T ss_pred HHHHHhhHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 99999999999999999999976 999999999999999988776555444
|
|
| >PRK10655 potE putrescine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-14 Score=136.86 Aligned_cols=239 Identities=12% Similarity=0.078 Sum_probs=162.4
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhH
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLG 107 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 107 (326)
++++.+.++.++..++++||+|++.+|..+++.|. .+++.+++.++........+.|.....|. .....+..
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~-------~GG~y~y~ 75 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRK-------SGGMGGYA 75 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCC-------CCchHHHH
Confidence 46679999999999999999999999988888876 56888999999999999999888877653 23334457
Q ss_pred HHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhH-HHH-HHHHHHHHHhhhhcCCchhhHHHHHH
Q 020421 108 YKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRS-FIF-LVVPVQILLSWINSLSALAPFSIFAD 185 (326)
Q Consensus 108 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~-~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~ 185 (326)
++.+||...++..+..++..............+++..+++.. .+... +.+ +..+.++.....++.+...+++.+..
T Consensus 76 ~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~--~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~ 153 (438)
T PRK10655 76 EYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGAT--LSPVQICLATIGVLWLCTVANFGGARITGQISSVTV 153 (438)
T ss_pred HHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 899999999999998887776666666555666776666531 12111 222 22222233344456666666666555
Q ss_pred HHHHHHHHHHHHhhhhhhhcCC-CCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHHHHHHHHHH
Q 020421 186 ICNVLAMTLVVKEDVQKILGGE-FSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSKLLAQAFTG 263 (326)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~~~~~~~~ 263 (326)
...+..+++++.........+. .+..+.+..+ .+.++..++....|+|.|.+....+.+|+|||+| .||++..+..+
T Consensus 154 ~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~ 232 (438)
T PRK10655 154 WGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLP-FFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLG 232 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCcCccCCc-hHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHH
Confidence 4444433333332222211110 0000111111 1346777788899999999999999999999865 99999999999
Q ss_pred HHHHHHHHHhHhhh
Q 020421 264 ITLVYVMFGFFGFM 277 (326)
Q Consensus 264 ~~~~y~~~~~~gy~ 277 (326)
+.++|++.......
T Consensus 233 ~~~~Y~l~~~~~~~ 246 (438)
T PRK10655 233 AAVIYIVSTNVIAG 246 (438)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999987765443
|
|
| >TIGR00912 2A0309 spore germination protein (amino acid permease) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=138.53 Aligned_cols=240 Identities=14% Similarity=0.181 Sum_probs=181.1
Q ss_pred CCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHH
Q 020421 30 GTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYK 109 (326)
Q Consensus 30 ~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~ 109 (326)
+++|.+|.++..+++++|+|++.+|....+.+...+++..++.++.......++.+..++.+ +.+..|..++
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p--------~~~~~~~~~~ 72 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFP--------EKNFSEILSK 72 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCC--------CCCHHHHHHH
Confidence 35899999999999999999999999888766667889999999999999999999999864 2378899999
Q ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHH
Q 020421 110 CMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNV 189 (326)
Q Consensus 110 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 189 (326)
++||+.+.+..+....+....+.......++.+...... .++.....+..++.......++++...+++.+.....+
T Consensus 73 ~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i 149 (359)
T TIGR00912 73 YLGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYLLP---RTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFL 149 (359)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 999999999998888888877777777777777665432 23333333444444445556788888888887766555
Q ss_pred HHH-HHHHHhhhhhhhcCCCCCcccccccccccchhhHHH-HHHHhhccccchhchHhhhhcccchHHHHHHHHHHHHHH
Q 020421 190 LAM-TLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGG-MAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLV 267 (326)
Q Consensus 190 ~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~ 267 (326)
... .++....... .+...-.|.++.++.+...+.- ...++|.+.+.+..+..++|||||.+|+...+..+++++
T Consensus 150 ~~~~~il~~~~~~~----~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~l 225 (359)
T TIGR00912 150 ILFILVLILLAPKL----GNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLL 225 (359)
T ss_pred HHHHHHHHHHhccc----ccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHH
Confidence 442 3332222111 1111223334445666666554 788999999999999999999999999999999999999
Q ss_pred HHHHHhHhhhhcCCCch
Q 020421 268 YVMFGFFGFMAYGDDTK 284 (326)
Q Consensus 268 y~~~~~~gy~~fG~~~~ 284 (326)
|....+.....+|.+..
T Consensus 226 y~~~~~~~i~~lg~~~~ 242 (359)
T TIGR00912 226 YILTTFVSISVFGGNVT 242 (359)
T ss_pred HHHHHHHHHheecHHHh
Confidence 99999999999986554
|
This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases. |
| >PRK10249 phenylalanine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-14 Score=134.45 Aligned_cols=240 Identities=16% Similarity=0.133 Sum_probs=166.3
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhcchhHH-HHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchh
Q 020421 27 RVTGTASAAQTLGNIIVSIVGTGVLGLPF-AFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGD 105 (326)
Q Consensus 27 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~-~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~ 105 (326)
+.+|+.+.++..+..++++||+|++.+|. +.+++|. ..++..++.+++.......+.|...+.| ......+
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P-------~~Gg~~~ 89 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEP-------VSGSFAH 89 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCHHH
Confidence 36678999999999999999999999886 5556676 5688899999999999999999999985 4445666
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHH
Q 020421 106 LGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFAD 185 (326)
Q Consensus 106 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 185 (326)
.+++.+|+...++..+..++.............+.++..+.++. .. ....+..+..+.....++.+..++++....
T Consensus 90 y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~-~~~~~~~~~l~~~lN~~gv~~~~~i~~~~~ 165 (458)
T PRK10249 90 FAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV---PT-WIWAAAFFIIINAVNLVNVRLYGETEFWFA 165 (458)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC---cH-HHHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 78999999999999999888877666677666777776655431 21 111222233333445556766666665554
Q ss_pred HHHHHHHHHHHHhhhhhhhcCC----CC----CcccccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHHH
Q 020421 186 ICNVLAMTLVVKEDVQKILGGE----FS----FSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSKL 256 (326)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~ 256 (326)
+..+..++.++..++.....+. .. +++...++.++.++..++....|+|.|.+......+|+|||+| .||+
T Consensus 166 ~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPra 245 (458)
T PRK10249 166 LIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKA 245 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHH
Confidence 4433322222222111100000 00 1111112234677889999999999999999999999999866 9999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhh
Q 020421 257 LAQAFTGITLVYVMFGFFGFMA 278 (326)
Q Consensus 257 ~~~~~~~~~~~y~~~~~~gy~~ 278 (326)
+..+...+.++|+.........
T Consensus 246 i~~~~~~~~~~y~~~~~~~~~~ 267 (458)
T PRK10249 246 VNQVVYRILLFYIGSLVVLLAL 267 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhee
Confidence 9999999999998765544433
|
|
| >PRK10644 arginine:agmatin antiporter; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-14 Score=134.51 Aligned_cols=241 Identities=12% Similarity=0.100 Sum_probs=161.7
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 27 RVTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 27 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
+.+++.+.++.++..++++||+|++.+|....+.|.. .+...++.++........+.|....+|.. .+.+.|
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~a----GG~y~~--- 76 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPSP----GGSYAY--- 76 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC----CChhHH---
Confidence 3567899999999999999999999999888877653 46667777788888888888888887532 234444
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhH-HHH--HHHHHHHHHhhhhcCCchhhHHHH
Q 020421 107 GYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRS-FIF--LVVPVQILLSWINSLSALAPFSIF 183 (326)
Q Consensus 107 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~-~~~--i~~~~~~pl~~~~~l~~l~~~s~~ 183 (326)
+++.+||...++..+..++.......+......++...+++.. .... ..+ +..+..+........+...+++.+
T Consensus 77 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i 153 (445)
T PRK10644 77 ARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL---KDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAV 153 (445)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---CCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 8899999999999888887665555555555555665555432 1121 111 222222333444566777777766
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcCC-CCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHHHHHHHH
Q 020421 184 ADICNVLAMTLVVKEDVQKILGGE-FSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSKLLAQAF 261 (326)
Q Consensus 184 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~~~~~~ 261 (326)
.....++.++.++...+....++. .+..+.+.. .++.++..++....|+|.|.+......+|+|||+| .||++..++
T Consensus 154 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~ 232 (445)
T PRK10644 154 ATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGL-GTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGV 232 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhccCCcccccc-chHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHH
Confidence 665554444433333222211100 000000111 12456667788899999999999999999999965 999999999
Q ss_pred HHHHHHHHHHHhHhhhhc
Q 020421 262 TGITLVYVMFGFFGFMAY 279 (326)
Q Consensus 262 ~~~~~~y~~~~~~gy~~f 279 (326)
.+++++|+.+.+......
T Consensus 233 ~i~~v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 233 LIAAVCYVLSSTAIMGMI 250 (445)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 999999999987644433
|
|
| >PRK11387 S-methylmethionine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-13 Score=130.60 Aligned_cols=241 Identities=12% Similarity=0.076 Sum_probs=159.8
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHHH-HHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPFA-FRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~-~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
.+|+.+.++..+..++++||+|++..|.. .+.+|....++..++.+++.......+.|....+|. ...+.+.
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~-------aGG~y~y 84 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE-------TGAFHVY 84 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCCHHHH
Confidence 57789999999999999999999988864 567776555778899999999999999999998853 3345567
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHH-HHHHHHHHHhhhhcCCchhhHHHHHH
Q 020421 107 GYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIF-LVVPVQILLSWINSLSALAPFSIFAD 185 (326)
Q Consensus 107 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~ 185 (326)
+++.+||...++..+..++.....+.......+..+..+.+. . ..|.. +...+++.+...++.+...+.+....
T Consensus 85 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~----~-~~~~~~~~~~~~~~~in~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 85 AARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ----V-PVWPWCLLFCALIFGLNVVSTRFFAEGEFWFS 159 (471)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----C-cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 899999999999999988877666655555555555444432 1 22222 22222233444455565555554444
Q ss_pred HHHHHHHHHHHHhhhhhhh-----cCCCC---Ccc---cccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-h
Q 020421 186 ICNVLAMTLVVKEDVQKIL-----GGEFS---FSD---RKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-F 253 (326)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~~-----~~~~~---~~~---~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~ 253 (326)
+..++.++.++..++.... .+..+ .++ ....+.+..++..++....|+|.|.+.+....+|+|||+| +
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~i 239 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVI 239 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHH
Confidence 3333333222222211100 00000 011 0111112345777888899999999999999999999966 9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhcC
Q 020421 254 SKLLAQAFTGITLVYVMFGFFGFMAYG 280 (326)
Q Consensus 254 ~~~~~~~~~~~~~~y~~~~~~gy~~fG 280 (326)
||++..++.++.++|+...+.......
T Consensus 240 PrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 240 PVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 999999999999999988765444443
|
|
| >TIGR01773 GABAperm gamma-aminobutyrate permease | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-13 Score=130.15 Aligned_cols=239 Identities=15% Similarity=0.168 Sum_probs=169.3
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhH-HHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLP-FAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP-~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
.+++.+.++..+..++++||+|++.+| .+.+++|. .+++..++.+++.......+.|.....| ......+.
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P-------~~Gg~~~~ 81 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANP-------DTGSFSTY 81 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCHHHH
Confidence 577899999999999999999999999 56777776 4688899999999999999999988875 33455677
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHH-HHHHHHHHHhhhhcCCchhhHHHHHH
Q 020421 107 GYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIF-LVVPVQILLSWINSLSALAPFSIFAD 185 (326)
Q Consensus 107 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~ 185 (326)
+++.+||+..++..+..++.....+.......++.+..++++ . ..|.. +..+++.........+...+++....
T Consensus 82 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-~~~~~~~~~~~~~~~~n~~gv~~~~~~~~~~~ 156 (452)
T TIGR01773 82 ADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD----I-PLWLFSLILTIVLTLTNLYSVKSYGEFEFWFA 156 (452)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----C-cHHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 899999999999999999888888888888888888777654 1 22332 22333333445556777777766655
Q ss_pred HHHHHHHHHHHHhhhh---hhhcCCC-----CCcccc-cccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHH
Q 020421 186 ICNVLAMTLVVKEDVQ---KILGGEF-----SFSDRK-AVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSK 255 (326)
Q Consensus 186 ~~~~~~~~~i~~~~~~---~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~ 255 (326)
+..+..++.++...+. ...+... +..+.. ..+.++.++..++....|+|.|.+......+|+|||+| .||
T Consensus 157 ~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPr 236 (452)
T TIGR01773 157 LIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITR 236 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHH
Confidence 5444433222222111 0000000 001111 11223456889999999999999999999999999965 999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhc
Q 020421 256 LLAQAFTGITLVYVMFGFFGFMAY 279 (326)
Q Consensus 256 ~~~~~~~~~~~~y~~~~~~gy~~f 279 (326)
++..+...+.++|+..........
T Consensus 237 Ai~~~~~~~~~~y~l~~~~~~~~~ 260 (452)
T TIGR01773 237 ATNSVIWRIIVFYLGSIFIVVALL 260 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeEe
Confidence 998888888999988765444433
|
GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity. |
| >TIGR00906 2A0303 cationic amino acid transport permease | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-13 Score=132.17 Aligned_cols=242 Identities=13% Similarity=0.136 Sum_probs=173.4
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhcchhHHHH--HhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcch
Q 020421 27 RVTGTASAAQTLGNIIVSIVGTGVLGLPFAF--RVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYG 104 (326)
Q Consensus 27 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~--~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~ 104 (326)
+.+|+.+.++.++..+++++|+|++.+|... ..+|.. .++.+++.++.+......+.|....+|.. .+.+.|
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~s----Gg~Y~y- 98 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKA----GSAYLY- 98 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCC----Ccceee-
Confidence 3678899999999999999999999998643 346765 47788899999999999999999988643 355555
Q ss_pred hhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhcc-------------CCch-hHHHHHHHHHHHHHhh
Q 020421 105 DLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYT-------------SLTY-RSFIFLVVPVQILLSW 170 (326)
Q Consensus 105 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~-------------~~~~-~~~~~i~~~~~~pl~~ 170 (326)
.++.+|+...+++.+..++.....+.+.....++++..++.... +... ..+..+..++++....
T Consensus 99 --~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln 176 (557)
T TIGR00906 99 --SYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLL 176 (557)
T ss_pred --HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHH
Confidence 67889999999999999988877777777777777777654310 0001 1122223333334556
Q ss_pred hhcCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC---Cccc-ccccccccchhhHHHHHHHhhccccchhchHhh
Q 020421 171 INSLSALAPFSIFADICNVLAMTLVVKEDVQKILGGEFS---FSDR-KAVSSNIRGLPFAGGMAVFCFEGFGMTFALESS 246 (326)
Q Consensus 171 ~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 246 (326)
.++.+..++++.+.....+..+++++..+..+...+... ..+. +..+.++.+++.+....+|+|.|.+.+....+|
T Consensus 177 ~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE 256 (557)
T TIGR00906 177 SFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEE 256 (557)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHh
Confidence 678888888888777666655554444444322111100 0011 112224567888999999999999999999999
Q ss_pred hhcccc-hHHHHHHHHHHHHHHHHHHHhHhh
Q 020421 247 MRERGR-FSKLLAQAFTGITLVYVMFGFFGF 276 (326)
Q Consensus 247 m~~p~~-~~~~~~~~~~~~~~~y~~~~~~gy 276 (326)
+|||+| +||+...++.+++++|+.+.+.-.
T Consensus 257 ~knP~r~iP~aii~sl~i~~vlY~lv~~~l~ 287 (557)
T TIGR00906 257 VKNPQRAIPIGIVTSLLVCFVAYFLMSAALT 287 (557)
T ss_pred ccCccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999976 999999999999999999886543
|
|
| >TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-13 Score=130.03 Aligned_cols=246 Identities=13% Similarity=0.111 Sum_probs=168.5
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhc-HhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAG-WLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G-~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
++++.+.++.++..+++++|+|++.+|....+.| ....++..++.++........+.|...++|.+ .....+.
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~------sGG~y~y 78 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPEL------DGGIYAY 78 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------CCChhhh
Confidence 4677999999999999999999999998876544 33446678888888888888899998888641 2233445
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhH-HHH-HHHHHHHHHhhhhcCCchhhHHHHH
Q 020421 107 GYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRS-FIF-LVVPVQILLSWINSLSALAPFSIFA 184 (326)
Q Consensus 107 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~-~~~-i~~~~~~pl~~~~~l~~l~~~s~~~ 184 (326)
.++.+||+..++..+..++........+.....+++..+++.....+... +.. +...+.......++.+...+++...
T Consensus 79 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~ 158 (473)
T TIGR00905 79 AREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFINTIT 158 (473)
T ss_pred HHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 79999999999999988877666677777777777777776321111111 222 2222233345566777777787777
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCC---CCCcc-cccccccccchhhHHHHHHHhhccccchhchHhhhhcccchHHHHHHH
Q 020421 185 DICNVLAMTLVVKEDVQKILGGE---FSFSD-RKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQA 260 (326)
Q Consensus 185 ~~~~~~~~~~i~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~ 260 (326)
....+..+++++.........+. +..++ .+..+..+..+..++....|+|.|.+......+|+||+|+.+|++..+
T Consensus 159 ~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPrai~~~ 238 (473)
T TIGR00905 159 TIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKATVLG 238 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHHHHHH
Confidence 66555444333332222111110 00011 111112355677788889999999999999999999955699999999
Q ss_pred HHHHHHHHHHHHhHhhhhc
Q 020421 261 FTGITLVYVMFGFFGFMAY 279 (326)
Q Consensus 261 ~~~~~~~y~~~~~~gy~~f 279 (326)
..+++++|+..........
T Consensus 239 ~~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 239 TLGALVIYILITLLSLGVL 257 (473)
T ss_pred HHHHHHHHHHHHHHHHhCc
Confidence 9999999998877644433
|
This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions. |
| >PRK11021 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-13 Score=127.87 Aligned_cols=228 Identities=18% Similarity=0.171 Sum_probs=153.8
Q ss_pred CCHHHHHHHHHHhhhhhhcchhHHHHH-hhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHh
Q 020421 32 ASAAQTLGNIIVSIVGTGVLGLPFAFR-VAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKC 110 (326)
Q Consensus 32 ~s~~~~~~~l~~~~iG~GiL~LP~~~~-~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~ 110 (326)
.+.++++...++++||+|++.+|.... .+|- ..+...++.++........+.|...++|+. .......++.
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~a-------GG~y~y~~~~ 72 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHA-------GGPAHFVGMA 72 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------CCHHHhHHHH
Confidence 367899999999999999999997554 4564 568889999999999999999999998643 3444558899
Q ss_pred hhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHH-HHHHHHHHHhhhhcCCchhhHHHHHHHHHH
Q 020421 111 MGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIF-LVVPVQILLSWINSLSALAPFSIFADICNV 189 (326)
Q Consensus 111 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 189 (326)
+||+..++..+..+................++..+++.. +...+.+ +...+.+.+...++.+...+++....+..+
T Consensus 73 ~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~ 149 (410)
T PRK11021 73 FGPRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGWS---SWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIV 149 (410)
T ss_pred hCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 999999999988876544444444444555665555431 1122222 222223334455666666666665443322
Q ss_pred HHHHHHHHhhhhhhhcCCCCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHHHHHHHHHHHHHHH
Q 020421 190 LAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSKLLAQAFTGITLVY 268 (326)
Q Consensus 190 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~~~~~~~~~~~~y 268 (326)
..+....... +...+..+.++. .+.++.++..++....|+|.|.+...+..+|+|||+| +||+...+..++.++|
T Consensus 150 ~i~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lY 225 (410)
T PRK11021 150 ALVVAIWWAG--DIKPADIPFPAP--GSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVY 225 (410)
T ss_pred HHHHHHHHHc--CCchhcCCCCCC--CCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHH
Confidence 2221111111 000000011111 1224778889999999999999999999999999865 9999999999999999
Q ss_pred HHHHhH
Q 020421 269 VMFGFF 274 (326)
Q Consensus 269 ~~~~~~ 274 (326)
+.....
T Consensus 226 il~~~~ 231 (410)
T PRK11021 226 WACTVV 231 (410)
T ss_pred HHHHHH
Confidence 998765
|
|
| >TIGR00909 2A0306 amino acid transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-13 Score=128.67 Aligned_cols=238 Identities=15% Similarity=0.141 Sum_probs=171.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHH
Q 020421 29 TGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGY 108 (326)
Q Consensus 29 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~ 108 (326)
+|+.+.++.++..+++++|+|++.+|....+.+-...++..++.++........+.|...+.+. .....+..+
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~-------~Gg~y~~~~ 74 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPV-------AGSPYTYAY 74 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-------CCcceeeHH
Confidence 5679999999999999999999999976554332345677888888888888889998888753 223344578
Q ss_pred HhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhc-cCCchhH-----------HHHHHHHHHHHHhhhhcCCc
Q 020421 109 KCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSY-TSLTYRS-----------FIFLVVPVQILLSWINSLSA 176 (326)
Q Consensus 109 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~-~~~~~~~-----------~~~i~~~~~~pl~~~~~l~~ 176 (326)
+.+||+.+++..+..++.....+..+....++.+..+++.. .+.+... +..+..++++.....++.+.
T Consensus 75 ~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~ 154 (429)
T TIGR00909 75 EAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKE 154 (429)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHH
Confidence 89999999999999999888888888888899888887631 0011100 11133333344555667888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhccc-chHH
Q 020421 177 LAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERG-RFSK 255 (326)
Q Consensus 177 l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~ 255 (326)
..+++.+.....+..+++++..+..+. + .....+ ..+.++.++..++....|+|.|.+......+|+|||+ +.+|
T Consensus 155 ~~~~~~v~~~~~i~~l~~~~~~~~~~~-~-~~~~~~--~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ 230 (429)
T TIGR00909 155 SGKVNDILVVLKVAALLLFAALGAIHF-A-SNNYTP--FMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPK 230 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhC-c-HHhcCC--CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccH
Confidence 888888877666665544443333321 1 111111 1122466788889999999999999999999999985 4899
Q ss_pred HHHHHHHHHHHHHHHHHhHhhh
Q 020421 256 LLAQAFTGITLVYVMFGFFGFM 277 (326)
Q Consensus 256 ~~~~~~~~~~~~y~~~~~~gy~ 277 (326)
++..+..++.++|+........
T Consensus 231 ai~~~~~~~~v~Yil~~~~~~~ 252 (429)
T TIGR00909 231 AIILSLIVVTLLYVLVAAVILG 252 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998865543
|
|
| >PRK11049 D-alanine/D-serine/glycine permease; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-13 Score=126.85 Aligned_cols=237 Identities=14% Similarity=0.162 Sum_probs=161.6
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHH-HHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPF-AFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~-~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
.+++.+.++..+..++++||+|++..|. +++++|. ..+...++++++.......+.|..... +...++.+.
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~-------~~~~~~~~y 89 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSN-------LEYKSFSDF 89 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCcHHHH
Confidence 6778999999999999999999998875 7777887 457778888888888888787776643 233356678
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHH
Q 020421 107 GYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADI 186 (326)
Q Consensus 107 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 186 (326)
+++.+||...+++.+..++.......+.....+.++..+++.. ....+..+ .+..+.+....+.+...+++.+...
T Consensus 90 a~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~---~~~~~~~~-~~~~~~~iN~~g~~~~~~i~~~~~~ 165 (469)
T PRK11049 90 ASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL---SDWVASLA-VVLLLLSLNLATVKMFGEMEFWFAM 165 (469)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999998776566666667777776665532 22222222 2222333445566666777766555
Q ss_pred HHHHHHHHHHHhhhhhhhc-----CCC--CC----cccccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hH
Q 020421 187 CNVLAMTLVVKEDVQKILG-----GEF--SF----SDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FS 254 (326)
Q Consensus 187 ~~~~~~~~i~~~~~~~~~~-----~~~--~~----~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~ 254 (326)
..+..++++++.++..... +.. .. ++...++.++.++..++....|+|.|.+.+....+|+|||+| +|
T Consensus 166 ~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iP 245 (469)
T PRK11049 166 IKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLP 245 (469)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHH
Confidence 5444433333332221100 000 01 111122223567889999999999999999999999999966 99
Q ss_pred HHHHHHHHHHHHHHHHHHhHhh
Q 020421 255 KLLAQAFTGITLVYVMFGFFGF 276 (326)
Q Consensus 255 ~~~~~~~~~~~~~y~~~~~~gy 276 (326)
|+...+...+.++|+.......
T Consensus 246 rai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 246 RAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHe
Confidence 9998777777888887666544
|
|
| >PRK10580 proY putative proline-specific permease; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-13 Score=129.34 Aligned_cols=237 Identities=14% Similarity=0.170 Sum_probs=162.1
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhcchhHHH-HHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchh
Q 020421 27 RVTGTASAAQTLGNIIVSIVGTGVLGLPFA-FRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGD 105 (326)
Q Consensus 27 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~-~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~ 105 (326)
+.+++.+.++.++..++++||+|++.+|.. .+.+|. ..++..+++++........+.|...++|. .....+
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-------~Gg~y~ 77 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPA-------ASSFSR 77 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCCHHH
Confidence 356779999999999999999999999865 556676 45888999999999999999999988853 334455
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHH
Q 020421 106 LGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFAD 185 (326)
Q Consensus 106 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 185 (326)
.+++.+||...+++.+..++.....+.......+.++..++++. ....+.++ .++++.....++.+...+++....
T Consensus 78 y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~l~~~ln~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 78 YAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTV---PHWIWVLS-VVLIICAVNLMSVKVFGELEFWFS 153 (457)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---ChHHHHHH-HHHHHHHHHHccchhHHHHHHHHH
Confidence 68999999999999998888776666666666677776665532 22222222 222333445556666666665554
Q ss_pred HHHHHHHHHHHHhhhh----hhhcCCC------CCcccccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hH
Q 020421 186 ICNVLAMTLVVKEDVQ----KILGGEF------SFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FS 254 (326)
Q Consensus 186 ~~~~~~~~~i~~~~~~----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~ 254 (326)
+..+..+++++..++. ....... .+++...++.++.++..++....|+|.|.+......+|+|||+| .|
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iP 233 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIP 233 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHH
Confidence 4433332222211110 0000000 01111222333557888889999999999999999999999976 99
Q ss_pred HHHHHHHHHHHHHHHHHHhHh
Q 020421 255 KLLAQAFTGITLVYVMFGFFG 275 (326)
Q Consensus 255 ~~~~~~~~~~~~~y~~~~~~g 275 (326)
|+...+...+.++|.......
T Consensus 234 rAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 234 RAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888887776543
|
|
| >TIGR03810 arg_ornith_anti arginine/ornithine antiporter | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-13 Score=126.87 Aligned_cols=245 Identities=14% Similarity=0.157 Sum_probs=164.9
Q ss_pred CCCCHHHHHHHHHHhhhhhhcchhHHHHH-hhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHH
Q 020421 30 GTASAAQTLGNIIVSIVGTGVLGLPFAFR-VAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGY 108 (326)
Q Consensus 30 ~~~s~~~~~~~l~~~~iG~GiL~LP~~~~-~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~ 108 (326)
++.+.++.++..++++||+|++.+|.... .+|....++..++.++........+.|...+.|+. + ....+.++
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~----g--GG~y~y~~ 74 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPEL----D--GGVYSYAK 74 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC----C--CChhhhHH
Confidence 46899999999999999999999997654 55654456678888888888888888888887532 1 13344489
Q ss_pred HhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhH-HHH-HHHHHHHHHhhhhcCCchhhHHHHHHH
Q 020421 109 KCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRS-FIF-LVVPVQILLSWINSLSALAPFSIFADI 186 (326)
Q Consensus 109 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~-~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~~ 186 (326)
+.+||...++..+..++........+.......+..+++......+.. +.. +..+..+.....+..+..++++.+..+
T Consensus 75 ~~fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~ 154 (468)
T TIGR03810 75 AGFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTI 154 (468)
T ss_pred hHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 999999999999999887766667777776677666665431111111 221 222222333445677777777777666
Q ss_pred HHHHHHHHHHHhhhhhhhc---CCCCCccc---ccccccccchhhHHHHHHHhhccccchhchHhhhhcccchHHHHHHH
Q 020421 187 CNVLAMTLVVKEDVQKILG---GEFSFSDR---KAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQA 260 (326)
Q Consensus 187 ~~~~~~~~i~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~ 260 (326)
..+..++.++..+...... ..+.+++. +.+...+.++..++....|+|.|.+....+.+|.||||+.+|++..+
T Consensus 155 ~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~~ 234 (468)
T TIGR03810 155 AKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATVIG 234 (468)
T ss_pred HHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHHHH
Confidence 5544433333222211100 00101111 11111244566788899999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHhHhhhhcC
Q 020421 261 FTGITLVYVMFGFFGFMAYG 280 (326)
Q Consensus 261 ~~~~~~~y~~~~~~gy~~fG 280 (326)
...+.++|+.+.+..+-..+
T Consensus 235 ~~~v~~lY~l~~~~~~g~~~ 254 (468)
T TIGR03810 235 LIGVLAIYVLVSVLSYGIMT 254 (468)
T ss_pred HHHHHHHHHHHHHHHHhCcC
Confidence 99999999998877665443
|
Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2. |
| >PRK10238 aromatic amino acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-13 Score=125.16 Aligned_cols=233 Identities=15% Similarity=0.165 Sum_probs=160.6
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHH-HHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPF-AFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~-~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
.+|+.+.++..+..++++||+|++..|. +.+++|. ..++..+++++........+.|.....| ...++.+.
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P-------~aGg~y~~ 81 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEP-------VAGSFSHF 81 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCHHHH
Confidence 6788999999999999999999999886 4556665 5677889999999999999999888885 44456666
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHH-HHHHHHHHHhhhhcCCchhhHHHHHH
Q 020421 107 GYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIF-LVVPVQILLSWINSLSALAPFSIFAD 185 (326)
Q Consensus 107 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~ 185 (326)
+++.+||...++..+..++.....+.......+++++.+.++. . .|.. +....++......+.+...+++....
T Consensus 82 ~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~--~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~ 156 (456)
T PRK10238 82 AYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEI---P--TWVSAAVFFVVINAINLTNVKVFGEMEFWFA 156 (456)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC---c--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8899999999999999999988888888888888887765531 2 2222 22222233333445556666665554
Q ss_pred HHHHHHHHHHHHhhhhhhhc--CCC-----C-CcccccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHHH
Q 020421 186 ICNVLAMTLVVKEDVQKILG--GEF-----S-FSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSKL 256 (326)
Q Consensus 186 ~~~~~~~~~i~~~~~~~~~~--~~~-----~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~ 256 (326)
...+..+++++..++..... ..+ + +++....+..+.++..++....|+|.|.+......+|+|||+| .||+
T Consensus 157 ~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrA 236 (456)
T PRK10238 157 IIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKA 236 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHH
Confidence 44443332222211110000 000 0 1111111223456778888899999999999999999999966 9999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 020421 257 LAQAFTGITLVYVMFGF 273 (326)
Q Consensus 257 ~~~~~~~~~~~y~~~~~ 273 (326)
+..+...+.+.|+....
T Consensus 237 i~~~~~~i~~~y~~~~~ 253 (456)
T PRK10238 237 TNQVIYRILIFYIGSLA 253 (456)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 98888888887766543
|
|
| >PRK10836 lysine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-12 Score=124.25 Aligned_cols=241 Identities=15% Similarity=0.112 Sum_probs=152.7
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHH-HHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPF-AFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~-~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
.+|+.+.++..+..++++||+|++.+|. +.+++|....++..++++++.......+.|.....|. .....+.
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~-------sGg~y~y 85 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV-------SGSFATY 85 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CCCHHHH
Confidence 5678999999999999999999999996 6667787556888999999999999999999999863 3344555
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHH
Q 020421 107 GYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADI 186 (326)
Q Consensus 107 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 186 (326)
+++.+|+..++++.+..++................+..+.+. .+.+......++++......+.+....++....+
T Consensus 86 ~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~~ 161 (489)
T PRK10836 86 GQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD----TPGWIWSALFLGVIFLLNYISVRGFGEAEYWFSL 161 (489)
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC----CchHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence 788899988888888877754443333222333333333332 1111112222222233344455555555444333
Q ss_pred HHHHHHHHHHHhhhhhh---hcCC-----CCCcc-cccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHHH
Q 020421 187 CNVLAMTLVVKEDVQKI---LGGE-----FSFSD-RKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSKL 256 (326)
Q Consensus 187 ~~~~~~~~i~~~~~~~~---~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~ 256 (326)
..+..++.++..++... ..+. .++.+ ..++++.+.++..+.....|+|.|.+.+....+|+|||+| .||+
T Consensus 162 ~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrA 241 (489)
T PRK10836 162 IKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRA 241 (489)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHH
Confidence 33222222111111100 0000 01110 0111223445555666678999999999999999999966 9999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhc
Q 020421 257 LAQAFTGITLVYVMFGFFGFMAY 279 (326)
Q Consensus 257 ~~~~~~~~~~~y~~~~~~gy~~f 279 (326)
+..++..+.++|+..........
T Consensus 242 i~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 242 VRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHheec
Confidence 99999999999998876554444
|
|
| >PRK10746 putative transport protein YifK; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.9e-13 Score=124.77 Aligned_cols=240 Identities=13% Similarity=0.134 Sum_probs=165.7
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHH-HHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPF-AFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~-~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
.+|+.+.++..+..++++||+|++..|. +.+.+|. ..++..++++++.+.....+.|.....| ...++.+.
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P-------~sGg~~~y 79 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEP-------VTGSFAVY 79 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCCHHHH
Confidence 5778999999999999999999998775 6667787 4577888899999999999999988874 44567777
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHH
Q 020421 107 GYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADI 186 (326)
Q Consensus 107 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 186 (326)
+++.+||...+++.+..++.....+.......+.+++.+++. .....+..++ ++.+.....++.+...+++.....
T Consensus 80 ~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~---~~~~~~~~~~-~~~~~~lN~~gv~~~~~~e~~~~~ 155 (461)
T PRK10746 80 AHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE---MAQWIPALIA-VALVALANLAAVRLYGEIEFWFAM 155 (461)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---CchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999888777777777777777766553 2222222222 222233444455555555544433
Q ss_pred HHHHHHHHHHHhhhhhh---hc-C-C----CCC-cccccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHH
Q 020421 187 CNVLAMTLVVKEDVQKI---LG-G-E----FSF-SDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSK 255 (326)
Q Consensus 187 ~~~~~~~~i~~~~~~~~---~~-~-~----~~~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~ 255 (326)
..+..+..++..++... .. . . .++ ++...++.++.++..++....|+|.|.+.+....+|+|||+| +||
T Consensus 156 ~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~ 235 (461)
T PRK10746 156 IKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRS 235 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHH
Confidence 33332222221111100 00 0 0 111 111122334677889999999999999999999999999966 999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhc
Q 020421 256 LLAQAFTGITLVYVMFGFFGFMAY 279 (326)
Q Consensus 256 ~~~~~~~~~~~~y~~~~~~gy~~f 279 (326)
+...+...+.++|+.....-....
T Consensus 236 Ai~~~~~~i~~~yv~~~~~~~~~~ 259 (461)
T PRK10746 236 AVGKVLWRILIFYVGAIFVIVTIF 259 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeee
Confidence 999888888889988655444444
|
|
| >TIGR00930 2a30 K-Cl cotransporter | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.2e-14 Score=141.59 Aligned_cols=242 Identities=11% Similarity=0.030 Sum_probs=172.2
Q ss_pred CCCCCCCHHHHHHHH-HHhhhhhhcch-hHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCCCCCcCcc
Q 020421 27 RVTGTASAAQTLGNI-IVSIVGTGVLG-LPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDK-LVSEDTSSTETKTY 103 (326)
Q Consensus 27 ~~~~~~s~~~~~~~l-~~~~iG~GiL~-LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~y 103 (326)
.+.++.+++++++.- +.+++|+|++. +++...++|...+++.++++++++..+...+.+.... .++. .+.+.|
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~a----GG~Y~y 148 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKG----GGAYYL 148 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc----cHHHHH
Confidence 356789999999888 99999999985 6788889998888999999999999999999888876 4321 233333
Q ss_pred hhhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhcc------CCchhHHHHHHHHHHHHHhhhhcCCch
Q 020421 104 GDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYT------SLTYRSFIFLVVPVQILLSWINSLSAL 177 (326)
Q Consensus 104 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~------~~~~~~~~~i~~~~~~pl~~~~~l~~l 177 (326)
.++.+|+..+..+.+..++.....+..|.+.+++++..+++... +.+......+..++++.+......+..
T Consensus 149 ---isralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ 225 (953)
T TIGR00930 149 ---ISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFAGMEWE 225 (953)
T ss_pred ---HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHhhHHHH
Confidence 68899999999999999998989999999999999999886421 011112222223333333445566777
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhcC----CCC-----Cc-c-cccccccccchhhHHHHHHHhhccccchhchHhh
Q 020421 178 APFSIFADICNVLAMTLVVKEDVQKILGG----EFS-----FS-D-RKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESS 246 (326)
Q Consensus 178 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~----~~~-----~~-~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 246 (326)
.+++.+..+..++.++.+++.++....+. ... .. + .+.++....++...++++++||.|......+.+|
T Consensus 226 ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgE 305 (953)
T TIGR00930 226 NKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGD 305 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777666665555544444433211000 000 00 0 1112211233778888899999999999999999
Q ss_pred hhcccc-hHHHHHHHHHHHHHHHHHHHhHh
Q 020421 247 MRERGR-FSKLLAQAFTGITLVYVMFGFFG 275 (326)
Q Consensus 247 m~~p~~-~~~~~~~~~~~~~~~y~~~~~~g 275 (326)
+|||+| +|+++..++.+++++|+++.+.-
T Consensus 306 lKnP~r~IPratl~ai~i~~vlYllv~~~~ 335 (953)
T TIGR00930 306 LKDPQKAIPKGTLLAILTTTVVYLGSVVLF 335 (953)
T ss_pred ccChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999966 99999999999999999998643
|
|
| >TIGR00913 2A0310 amino acid permease (yeast) | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-12 Score=124.82 Aligned_cols=236 Identities=14% Similarity=0.110 Sum_probs=164.5
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcchhH-HHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhH
Q 020421 29 TGTASAAQTLGNIIVSIVGTGVLGLP-FAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLG 107 (326)
Q Consensus 29 ~~~~s~~~~~~~l~~~~iG~GiL~LP-~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 107 (326)
+|+.+.++..+..++++||+|++..| .+.+++|....+...++.+++.......+.|....+|. ....|.+.+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~------~gG~~~~~~ 74 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPV------VSGSFATYA 74 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------CCCCHHHHH
Confidence 36789999999999999999999876 56677775544777888999999999999999998852 233567788
Q ss_pred HHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHH
Q 020421 108 YKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADIC 187 (326)
Q Consensus 108 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 187 (326)
++.+||...+++.+..++.....+.......+..+..+.+. .....+..+ ..+++.+...++.+...+++......
T Consensus 75 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~in~~gv~~~~~~~~~~~~~ 150 (478)
T TIGR00913 75 SRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDK---VNPAVWIAI-FYVFIVIINLFGVKGYGEAEFWFSSI 150 (478)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCHHHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 99999999999999999988888888888888777655432 222233322 22223344556777777777655444
Q ss_pred HHHHHHHHHHhhhhhhhcC---CC-----CCcccccccc-----cccchhhHHHHHHHhhccccchhchHhhhhcccc-h
Q 020421 188 NVLAMTLVVKEDVQKILGG---EF-----SFSDRKAVSS-----NIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-F 253 (326)
Q Consensus 188 ~~~~~~~i~~~~~~~~~~~---~~-----~~~~~~~~~~-----~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~ 253 (326)
.+..++.++...+.....+ .. .+.+.+.+++ .+.++..++....|+|.|.+......+|+|||+| +
T Consensus 151 ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~i 230 (478)
T TIGR00913 151 KILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSI 230 (478)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHH
Confidence 3332222222111111000 00 0111111211 1556788888899999999999999999999865 9
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 020421 254 SKLLAQAFTGITLVYVMFGFF 274 (326)
Q Consensus 254 ~~~~~~~~~~~~~~y~~~~~~ 274 (326)
||++..+..++.++|+...+.
T Consensus 231 Prai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 231 PRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987654
|
|
| >PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-13 Score=122.73 Aligned_cols=237 Identities=17% Similarity=0.124 Sum_probs=191.5
Q ss_pred CCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHh
Q 020421 31 TASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKC 110 (326)
Q Consensus 31 ~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~ 110 (326)
++|..|....+..+++|+|++.+|....+.+- .|++..++.+........++.+..++.+ ..+..|+.++.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p--------~~~l~~~~~~~ 71 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFP--------GKTLVEISEKL 71 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCCHHHHHHHH
Confidence 57999999999999999999999998776653 7788888888888888888888888854 45899999999
Q ss_pred hhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHH
Q 020421 111 MGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVL 190 (326)
Q Consensus 111 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 190 (326)
+||+.+.+..+...++........+...+|.+....-. .++......+.++.......++++...+.+.+.....+.
T Consensus 72 ~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp---~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i 148 (320)
T PF03845_consen 72 FGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLP---ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLI 148 (320)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999886543 255555555555556667778999998877766665555
Q ss_pred HHHHHHHhhhhhhhcCCCCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhcccchHHHHHHHHHHHHHHHHH
Q 020421 191 AMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVM 270 (326)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~ 270 (326)
....+......+ .++..-.|.++.++.++.++.....+.|.+...+.-+...+|+|+|.+|....+..+.+++|..
T Consensus 149 ~~~~i~~~~~~~----~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~ 224 (320)
T PF03845_consen 149 LLLLILLLSIPN----IDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLF 224 (320)
T ss_pred HHHHHHHHhccc----CCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 555555444332 2333334445556888999988899999999889899999999999999999999999999999
Q ss_pred HHhHhhhhcCCCc
Q 020421 271 FGFFGFMAYGDDT 283 (326)
Q Consensus 271 ~~~~gy~~fG~~~ 283 (326)
.-+.....||.+.
T Consensus 225 ~~~~~i~vfG~~~ 237 (320)
T PF03845_consen 225 IIFITIGVFGPEL 237 (320)
T ss_pred HHHHHHHhcCHHH
Confidence 9999999999764
|
A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane |
| >TIGR00911 2A0308 L-type amino acid transporter | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.3e-13 Score=127.49 Aligned_cols=245 Identities=13% Similarity=0.202 Sum_probs=157.9
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhcchhHHH-HHhhcHhh-HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcch
Q 020421 27 RVTGTASAAQTLGNIIVSIVGTGVLGLPFA-FRVAGWLA-GCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYG 104 (326)
Q Consensus 27 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~-~~~~G~~~-g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~ 104 (326)
+.+++.+.++.++..+++++|+|++..|.. ..++|-.. .++..++.+++.......+.|.....|.. .+.+.
T Consensus 39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~s----GG~y~-- 112 (501)
T TIGR00911 39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKS----GGEYN-- 112 (501)
T ss_pred ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----Cchhh--
Confidence 467889999999999999999999998865 55566432 23566778888888889999998888642 23444
Q ss_pred hhHHHhhhhhhHHHHHHHHHH-HHhhhHHHHHHHHHHhHHH-HhhhccCCchh--HHHHHHHHHHHHHhhhhcCCchhhH
Q 020421 105 DLGYKCMGKAGRFLTEFLIFT-SQCGGSVAYLVFIGQNLFS-IFKSYTSLTYR--SFIFLVVPVQILLSWINSLSALAPF 180 (326)
Q Consensus 105 ~l~~~~~G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~-l~~~~~~~~~~--~~~~i~~~~~~pl~~~~~l~~l~~~ 180 (326)
..++.+||...++..+..+. ...+.+..+....++++.. +.+.. ..+.. ....+..++.......++.+...++
T Consensus 113 -~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~-~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~~~ 190 (501)
T TIGR00911 113 -YILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDC-EVPEWAIRLVAVLCVLLLTLVNCLSVKWATRV 190 (501)
T ss_pred -hHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 46789999988888776544 2233444555555555432 33321 01111 1111222223334445567777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcCCC-CCc---ccccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHH
Q 020421 181 SIFADICNVLAMTLVVKEDVQKILGGEF-SFS---DRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSK 255 (326)
Q Consensus 181 s~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~ 255 (326)
+....+..+..+++++..++.....+.. ..+ ..+....++.++..++....|+|.|.+....+.+|+|||+| .||
T Consensus 191 ~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPr 270 (501)
T TIGR00911 191 QDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPI 270 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHH
Confidence 7776666555444433333322111111 110 01111113556788889999999999999999999999965 999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhc
Q 020421 256 LLAQAFTGITLVYVMFGFFGFMAY 279 (326)
Q Consensus 256 ~~~~~~~~~~~~y~~~~~~gy~~f 279 (326)
++..+..+++++|+++.+.-....
T Consensus 271 Ai~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 271 AIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999876554444
|
|
| >KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-14 Score=130.49 Aligned_cols=245 Identities=13% Similarity=0.178 Sum_probs=172.7
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhcchhHHHHHh-hc-HhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcch
Q 020421 27 RVTGTASAAQTLGNIIVSIVGTGVLGLPFAFRV-AG-WLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYG 104 (326)
Q Consensus 27 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~-~G-~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~ 104 (326)
+.+++.+.+.++...++++||+|++..|....+ +| ...+++..+++++++...+.+.+|.-...++. .+++.|
T Consensus 9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipks----Ggd~ay- 83 (479)
T KOG1287|consen 9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKS----GGDYAY- 83 (479)
T ss_pred cccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCC----Ccchhh-
Confidence 467889999999999999999999999986554 44 44477789999999999999888887777543 445555
Q ss_pred hhHHHhhhhhhHHHHHHHHHHHHhhhH-HHHHHHHHHh-HHHHhhhccCCchhH--HHHHHHHHHHHHhhhhcCCchhhH
Q 020421 105 DLGYKCMGKAGRFLTEFLIFTSQCGGS-VAYLVFIGQN-LFSIFKSYTSLTYRS--FIFLVVPVQILLSWINSLSALAPF 180 (326)
Q Consensus 105 ~l~~~~~G~~~~~~~~~~~~~~~~g~~-~~y~i~~~~~-l~~l~~~~~~~~~~~--~~~i~~~~~~pl~~~~~l~~l~~~ 180 (326)
..++||+...+...+.-.+...... ..+.+.++++ +.+.++. +...... ....+.++++-+...-+++.-.++
T Consensus 84 --i~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-c~~p~~~~~lla~~~l~~lt~~n~~~V~~a~~v 160 (479)
T KOG1287|consen 84 --ISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-CDVPRVASKLLAAALLVLLTLINSFSVKWATRV 160 (479)
T ss_pred --HHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-CCCchHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 6788999877766665555544444 7888888888 7777773 2222222 222233333333333355555566
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcCCCCC-ccc--ccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHHH
Q 020421 181 SIFADICNVLAMTLVVKEDVQKILGGEFSF-SDR--KAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSKL 256 (326)
Q Consensus 181 s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~ 256 (326)
+.+..++.++.+.+++.-+++....+.... ++. ..-..+..++..++-...|||.|+..+-.+.+|+|||+| +|++
T Consensus 161 q~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~A 240 (479)
T KOG1287|consen 161 QIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRA 240 (479)
T ss_pred HHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHH
Confidence 666777777777777766666432221111 111 111114667889999999999999999999999999977 9999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhc
Q 020421 257 LAQAFTGITLVYVMFGFFGFMAY 279 (326)
Q Consensus 257 ~~~~~~~~~~~y~~~~~~gy~~f 279 (326)
...++.+++++|+++-+..+.+-
T Consensus 241 i~isi~lvt~iYil~NvAy~~vl 263 (479)
T KOG1287|consen 241 ILISIPLVTVIYVLVNVAYFTVL 263 (479)
T ss_pred HHHhhHHHHHHHHHhHhheeEec
Confidence 99999999999999988665544
|
|
| >PRK11357 frlA putative fructoselysine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-12 Score=123.18 Aligned_cols=238 Identities=13% Similarity=0.134 Sum_probs=160.7
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHHHH-HhhcHh-hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPFAF-RVAGWL-AGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGD 105 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~-~~~G~~-~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~ 105 (326)
.+|+.+.++.++..++.++|+|++..|... ..+|-. ..+..+++.+++.......+.|....+|.. .+.+.|
T Consensus 6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~----GG~y~y-- 79 (445)
T PRK11357 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPEN----GADYVY-- 79 (445)
T ss_pred ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----CCceee--
Confidence 577899999999999999999999988764 445543 356778888889999999999999988654 455555
Q ss_pred hHHHhhhhhhHHHHHHHHH-HHHhhhHHHHHHHHHHhHHHHhhhccCCchhHH--HHHHHHHHHHHhhhhcCCchhhHHH
Q 020421 106 LGYKCMGKAGRFLTEFLIF-TSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSF--IFLVVPVQILLSWINSLSALAPFSI 182 (326)
Q Consensus 106 l~~~~~G~~~~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~--~~i~~~~~~pl~~~~~l~~l~~~s~ 182 (326)
.++.+||...++..+..+ .........+....++++..+.+. +.... ..+..+..+.....++.+...+++.
T Consensus 80 -~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~----~~~~~~~~~~~~~~~~~~ln~~gv~~~~~v~~ 154 (445)
T PRK11357 80 -LKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI----DPLLGKFIAAGLIIAFMLLHLRSVEGGAAFQT 154 (445)
T ss_pred -HHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 678899998888888644 334444556667777776654432 22111 1122222333445567777777777
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCC-C-CCcccccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHHHHHH
Q 020421 183 FADICNVLAMTLVVKEDVQKILGGE-F-SFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSKLLAQ 259 (326)
Q Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~~~~ 259 (326)
...+..+..+++++..+......+. . +.+......+++.++..++....|+|.|.+......+|+|||+| +||++..
T Consensus 155 ~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~ 234 (445)
T PRK11357 155 LITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIG 234 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHH
Confidence 7666555544333333222111111 0 10110011112556778888999999999999999999999966 8999999
Q ss_pred HHHHHHHHHHHHHhHhh
Q 020421 260 AFTGITLVYVMFGFFGF 276 (326)
Q Consensus 260 ~~~~~~~~y~~~~~~gy 276 (326)
++.+++++|+.......
T Consensus 235 ~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 235 SCLLVLVLYTLLALVIS 251 (445)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998776443
|
|
| >TIGR00908 2A0305 ethanolamine permease | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-12 Score=122.31 Aligned_cols=235 Identities=14% Similarity=0.103 Sum_probs=161.9
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhH
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLG 107 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 107 (326)
.+|+.+.++.+...+++++|......+..+++.|+..-.+..++.++........+.|....+|. .......+
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-------~Gg~y~~~ 77 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-------AGGGYGFA 77 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CCCHHHHH
Confidence 57789999999999999998444456788888998766667777787888888889999988853 33444567
Q ss_pred HHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHH
Q 020421 108 YKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADIC 187 (326)
Q Consensus 108 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 187 (326)
++.+||..+++..+..++........+....++++..+++.. + .+...+.....+.+...+..+...+++....+.
T Consensus 78 ~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~---~-~~~~~~~~~~~~~~ln~~g~~~~~~i~~~~~~~ 153 (442)
T TIGR00908 78 RRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG---P-GWLAALVFYIVFIGINILGVGEAAKLEFVVTAV 153 (442)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---c-hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999998888888888888999988887642 2 222222222223344555667777776655544
Q ss_pred HHHHHHHHHHhhhhhhhc-C--CCCCcccccc-cccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHHHHHHHHH
Q 020421 188 NVLAMTLVVKEDVQKILG-G--EFSFSDRKAV-SSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSKLLAQAFT 262 (326)
Q Consensus 188 ~~~~~~~i~~~~~~~~~~-~--~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~~~~~~~ 262 (326)
.++.+.+++.....+... + ..+..+...+ +..+.++..++...+|+|.|++......+|+|||+| .+|++..+..
T Consensus 154 ~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~ 233 (442)
T TIGR00908 154 AIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAIL 233 (442)
T ss_pred HHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHH
Confidence 433332222211111000 0 0001111111 112456778888899999999999999999999965 9999999999
Q ss_pred HHHHHHHHHHh
Q 020421 263 GITLVYVMFGF 273 (326)
Q Consensus 263 ~~~~~y~~~~~ 273 (326)
++.++|+.+..
T Consensus 234 ~~~~~~~~~~~ 244 (442)
T TIGR00908 234 TLLALAAGILV 244 (442)
T ss_pred HHHHHHHHHHH
Confidence 98888887644
|
The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. |
| >PRK10197 gamma-aminobutyrate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-12 Score=119.55 Aligned_cols=224 Identities=16% Similarity=0.143 Sum_probs=155.1
Q ss_pred HHHhhhhhhcchhHH-HHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHhhhhhhHHHH
Q 020421 41 IIVSIVGTGVLGLPF-AFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLT 119 (326)
Q Consensus 41 l~~~~iG~GiL~LP~-~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~ 119 (326)
.++++||+|++..|. +.+++|. ..++..++.+++.......+.|....+| +.....+.+++.+||+..+.+
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P-------~~Gg~y~y~~~~~G~~~gf~~ 74 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATP-------DTGSFSTYADKAIGRWAGYTI 74 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCHHHHHHHHcChHHHHHH
Confidence 467899999999886 7778886 4788999999999999999999999885 344556668899999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHHHHhh
Q 020421 120 EFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKED 199 (326)
Q Consensus 120 ~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~ 199 (326)
.+..++.....+.......+..+..+.++ .. .....+..++.+.+....+.+....++....+..+..++.++..+
T Consensus 75 gw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~ 150 (446)
T PRK10197 75 GWLYWWFWVLVIPLEANIAAMILHSWVPG---IP-IWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLG 150 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc---Cc-HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 99998877766666666666555554332 12 222222333333344455666667777666655544444333332
Q ss_pred hhhhhcCC---C------CCcccccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHHHHHHHHHHHHHHHH
Q 020421 200 VQKILGGE---F------SFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSKLLAQAFTGITLVYV 269 (326)
Q Consensus 200 ~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~~~~~~~~~~~~y~ 269 (326)
+....... + .+++.+.++..+.++..++....|+|.|.+.+....+|+|||+| ++|++..+...+.++|+
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yi 230 (446)
T PRK10197 151 AVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYL 230 (446)
T ss_pred HHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH
Confidence 22111000 0 01111112334668999999999999999999999999999976 99999999999999999
Q ss_pred HHHhHhh
Q 020421 270 MFGFFGF 276 (326)
Q Consensus 270 ~~~~~gy 276 (326)
...+.-.
T Consensus 231 l~~~~~~ 237 (446)
T PRK10197 231 CSIFVVV 237 (446)
T ss_pred HHHHHHh
Confidence 8766533
|
|
| >COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-12 Score=117.84 Aligned_cols=232 Identities=19% Similarity=0.193 Sum_probs=171.9
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcc-hhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVL-GLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL-~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
.+++.+.++--+.-++..||+|.+ .-..+.+.+|.-. ++..+++|++.++-++.+.|...+- +...++.+.
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSv-lLaY~I~G~~~f~iMRaLGEm~~~~-------p~~gSF~~~ 82 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSV-LLAYLIAGIFVFLIMRALGEMLVAN-------PVSGSFSDY 82 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHH-HHHHHHHHHHHHHHHHHHHHHHHhC-------CCCCcHHHH
Confidence 567789999999999999999965 5778999999877 7788999999999999999988885 466799999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHH--HHHHhhhhcCCchhhHHHHH
Q 020421 107 GYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPV--QILLSWINSLSALAPFSIFA 184 (326)
Q Consensus 107 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~--~~pl~~~~~l~~l~~~s~~~ 184 (326)
+++.+|++..++.++.+++.....+++.+..++.+++.++++. ..-.+.+++.++ ..=+..+|...++.++-.+-
T Consensus 83 a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v---P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlI 159 (462)
T COG1113 83 ARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV---PQWVFALAAVVLLLAVNLISVKVFGELEFWFALI 159 (462)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999873 222222222222 23366677777777554444
Q ss_pred HHHHHHHHHHHHHhhhhhhhcCCC---C----CcccccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHHH
Q 020421 185 DICNVLAMTLVVKEDVQKILGGEF---S----FSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSKL 256 (326)
Q Consensus 185 ~~~~~~~~~~i~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~ 256 (326)
-+..++.++++-...+....++.. . +++--.+|+++.+++.++-+.+|||.+.+.+--...|-|||+| .+|+
T Consensus 160 KV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkA 239 (462)
T COG1113 160 KVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKA 239 (462)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHH
Confidence 333333333322222221111111 1 2222235667899999999999999999999999999999977 7787
Q ss_pred HHHHHHHHHHHHHH
Q 020421 257 LAQAFTGITLVYVM 270 (326)
Q Consensus 257 ~~~~~~~~~~~y~~ 270 (326)
......-+.++|..
T Consensus 240 in~V~~RI~iFYvg 253 (462)
T COG1113 240 INSVIWRILIFYVG 253 (462)
T ss_pred HhhhhHHHHHHHHH
Confidence 66555555555543
|
|
| >PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.7e-12 Score=116.46 Aligned_cols=241 Identities=16% Similarity=0.193 Sum_probs=167.8
Q ss_pred CCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHH-HHHHHHHHHHHHHhccccCCCCCcCcchhhHHHh
Q 020421 32 ASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLST-YYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKC 110 (326)
Q Consensus 32 ~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~ 110 (326)
+++++.+...+++++|+|++..| .....|.. .++..++.+.+. ......+.|.....+ +.....+..++.
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p-------~~GG~y~~~~~~ 71 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYP-------SAGGIYVWVSRA 71 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTT-------SSTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCC-------CcCeeeehhhhc
Confidence 36889999999999999999999 66666765 466666666665 677777778766653 444555668999
Q ss_pred hhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCch-hHHHH-HHHHHHHHHhhhhcCCchhhHHHHHHHHH
Q 020421 111 MGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTY-RSFIF-LVVPVQILLSWINSLSALAPFSIFADICN 188 (326)
Q Consensus 111 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~-~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 188 (326)
+||+.+++..+..++........+.....+.+...+......++ ..+.+ +..++.......++.+..++++.......
T Consensus 72 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 151 (426)
T PF13520_consen 72 FGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIK 151 (426)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred ccccchhcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhh
Confidence 99999999999999999988888888888888887653111111 12222 33333344555567777777777776666
Q ss_pred H-HHHHHHHHhhhhhhhcCCCC---CcccccccccccchhhHHHHHHHhhccccchhchHhhhhcccchHHHHHHHHHHH
Q 020421 189 V-LAMTLVVKEDVQKILGGEFS---FSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGRFSKLLAQAFTGI 264 (326)
Q Consensus 189 ~-~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~ 264 (326)
+ ..+++++..++.....+..+ ....+..+..+.+...++...+|+|.|.+....+.+|+|| |+.+|++..+..++
T Consensus 152 i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~~ 230 (426)
T PF13520_consen 152 IVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIIIV 230 (426)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHHH
T ss_pred hhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccchhHH
Confidence 6 34334443333322111111 0111222334556889999999999999999999999998 78999999999999
Q ss_pred HHHHHHHHhHhhhhcCCC
Q 020421 265 TLVYVMFGFFGFMAYGDD 282 (326)
Q Consensus 265 ~~~y~~~~~~gy~~fG~~ 282 (326)
.++|...........+++
T Consensus 231 ~i~y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 231 AIIYILFSIALLGALPDD 248 (426)
T ss_dssp HHHHHHHHHHHHTTSTHC
T ss_pred HHHHhhhhheeeecccch
Confidence 999999988777766543
|
... |
| >COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-11 Score=113.22 Aligned_cols=237 Identities=15% Similarity=0.135 Sum_probs=181.8
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcc-hhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVL-GLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL-~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
.+++...+.-.+.-++..||+|.+ +...+.+++|....++..++.+.+.+..+..+.|....+| ...+|...
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-------~sGsF~~y 114 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-------VSGSFSTY 114 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCCchhhh
Confidence 678899999999999999999977 6889999999999999999999999999999999999985 44468888
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHH--HhhhhcCCchhhHHHHH
Q 020421 107 GYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQIL--LSWINSLSALAPFSIFA 184 (326)
Q Consensus 107 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~p--l~~~~~l~~l~~~s~~~ 184 (326)
+.+..+|..++.+.+..++....++...+...+..++.+.++. .+...|..++.++++. +.-.|...+.-++-...
T Consensus 115 a~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~--v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~i 192 (541)
T COG0833 115 ATRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT--VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSI 192 (541)
T ss_pred hhhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC--CChHHHHHHHHHHHHHHHHhcccccceehHHHHHH
Confidence 9999999999999999999999999999999999999988652 3566666655555544 34456666665433332
Q ss_pred HHHHHHHHH---HHHHhhhhhh--hcCCCCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHHHHH
Q 020421 185 DICNVLAMT---LVVKEDVQKI--LGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSKLLA 258 (326)
Q Consensus 185 ~~~~~~~~~---~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~~~ 258 (326)
-+..++.++ +++..+.... .-+...+.++.++++++.++...+-+..|+|.|.+.+--...|-+||+| +||++.
T Consensus 193 KV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik 272 (541)
T COG0833 193 KVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIK 272 (541)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHH
Confidence 222222211 1221211110 0012224455567767899999999999999999999999999999987 899988
Q ss_pred HHHHHHHHHHHHHHh
Q 020421 259 QAFTGITLVYVMFGF 273 (326)
Q Consensus 259 ~~~~~~~~~y~~~~~ 273 (326)
-.+--+.++|+..-+
T Consensus 273 ~vfwRIl~FYi~si~ 287 (541)
T COG0833 273 QVFWRILLFYILSIF 287 (541)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888876543
|
|
| >COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-10 Score=107.84 Aligned_cols=247 Identities=14% Similarity=0.149 Sum_probs=173.7
Q ss_pred CCCCCCCHHH-HHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchh
Q 020421 27 RVTGTASAAQ-TLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGD 105 (326)
Q Consensus 27 ~~~~~~s~~~-~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~ 105 (326)
+.+++.+.++ ......++++|.|++.+|......+ ....+..++.+++..+....+.|.....+ +...+.+
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p-------~~GG~y~ 80 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIP-------SAGGAYA 80 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CCCCeee
Confidence 3566777777 8899999999999999998887765 22233366667777777777778777654 3334555
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhc--cCCc-hhHHHH-HHHHHHHHHhhhhcCCchhhHH
Q 020421 106 LGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSY--TSLT-YRSFIF-LVVPVQILLSWINSLSALAPFS 181 (326)
Q Consensus 106 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~--~~~~-~~~~~~-i~~~~~~pl~~~~~l~~l~~~s 181 (326)
..++.+||...+++.+..++................+..+++.. ...+ ...+.+ +....++.+...++.+...+++
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~ 160 (466)
T COG0531 81 YAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAKIN 160 (466)
T ss_pred ehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 58999999888999999999999999999999998888877742 1111 111222 3344444455666777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcCC-CCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhccc-chHHHHHH
Q 020421 182 IFADICNVLAMTLVVKEDVQKILGGE-FSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERG-RFSKLLAQ 259 (326)
Q Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~ 259 (326)
....+..+...+++............ ......+.....+..+...+....|+|.|.+...+..+|+|||+ +.+|++..
T Consensus 161 ~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~ 240 (466)
T COG0531 161 SIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIIL 240 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHH
Confidence 77776666655555544444322111 11111111112345688888999999999999999999999985 58999999
Q ss_pred HHHHHHHHHHHHHhHhhhhcCC
Q 020421 260 AFTGITLVYVMFGFFGFMAYGD 281 (326)
Q Consensus 260 ~~~~~~~~y~~~~~~gy~~fG~ 281 (326)
++.++.++|+..........++
T Consensus 241 ~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 241 SLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHHHHhCccH
Confidence 9999999999999877777765
|
|
| >KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=116.69 Aligned_cols=241 Identities=16% Similarity=0.176 Sum_probs=175.1
Q ss_pred CCCCCCCCCHHHHHHHHHHhhhhhhcch-hHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcc
Q 020421 25 SGRVTGTASAAQTLGNIIVSIVGTGVLG-LPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTY 103 (326)
Q Consensus 25 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~-LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y 103 (326)
+++.+++.+.+.-.+.-++++||+|++- ...+.++.|-..-++..++++.....+...+.|...++|.. ..++
T Consensus 25 ~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~------aGs~ 98 (554)
T KOG1286|consen 25 ETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVS------AGSF 98 (554)
T ss_pred cchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccc------cccc
Confidence 3457888999999999999999999885 56789999988888889999999999999999999988521 2455
Q ss_pred hhhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHh---------hhccCCchhHHHH--HHHHHHHHHhhhh
Q 020421 104 GDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIF---------KSYTSLTYRSFIF--LVVPVQILLSWIN 172 (326)
Q Consensus 104 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~---------~~~~~~~~~~~~~--i~~~~~~pl~~~~ 172 (326)
...+++..|+...+.+.+-+++.....+...+...+.+++.+. ++ .+...|.. ...++++-+..++
T Consensus 99 ~~ya~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~---~~~~~~~~~fla~~v~in~~gv~ 175 (554)
T KOG1286|consen 99 YTYAYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDT---VNPGGWIPDFLAFILIINLFGVL 175 (554)
T ss_pred eeeeeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccC---CCCCccHHHHHHHHHHHHHHHHh
Confidence 5668899999999999999999999999999999999999986 32 23333333 2333333344444
Q ss_pred cCCchhh---HHHHHHHHHHHHHHHHHHhhhhhh-h-c--CCCCCcccccc-cccccchhhHHHHHHHhhccccchhchH
Q 020421 173 SLSALAP---FSIFADICNVLAMTLVVKEDVQKI-L-G--GEFSFSDRKAV-SSNIRGLPFAGGMAVFCFEGFGMTFALE 244 (326)
Q Consensus 173 ~l~~l~~---~s~~~~~~~~~~~~~i~~~~~~~~-~-~--~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~ 244 (326)
-..+..+ ++.+-.+..++.+.+++..+.... . + +...+.+...+ +..+.++...+.+..|+|.|.+.+-...
T Consensus 176 ~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a 255 (554)
T KOG1286|consen 176 AYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTA 255 (554)
T ss_pred hccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHH
Confidence 4333333 333333333333333333322211 0 0 11112222223 3348899999999999999999999999
Q ss_pred hhhhcccc-hHHHHHHHHHHHHHHHHHHHhH
Q 020421 245 SSMRERGR-FSKLLAQAFTGITLVYVMFGFF 274 (326)
Q Consensus 245 ~~m~~p~~-~~~~~~~~~~~~~~~y~~~~~~ 274 (326)
+|.||||| .|+++..++..++++|+...+.
T Consensus 256 ~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~ 286 (554)
T KOG1286|consen 256 EEAKNPRKAIPKAIKQSLLRILLFYILSSIV 286 (554)
T ss_pred HhccCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999976 9999999999999999998863
|
|
| >KOG3832 consensus Predicted amino acid transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.2e-11 Score=94.78 Aligned_cols=214 Identities=18% Similarity=0.220 Sum_probs=151.2
Q ss_pred CCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------cCCC-----
Q 020421 32 ASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSE---------DTSS----- 97 (326)
Q Consensus 32 ~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~---------~~~~----- 97 (326)
.|..-+...++|-++|+|.|++|.+|+.+||..++.++.+.++.++.+....+++....+.+ ++++
T Consensus 12 ysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~s 91 (319)
T KOG3832|consen 12 YSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDES 91 (319)
T ss_pred hhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccccc
Confidence 45556778889999999999999999999999999999999999999999999876654421 1000
Q ss_pred -----------------------------------CCcCcchhhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhH
Q 020421 98 -----------------------------------TETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNL 142 (326)
Q Consensus 98 -----------------------------------~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l 142 (326)
++....+|++...|.|.+-.+..++++++++|....|...+-...
T Consensus 92 tasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~ 171 (319)
T KOG3832|consen 92 TASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSA 171 (319)
T ss_pred ccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHh
Confidence 124455788889999999999999999999999999988776666
Q ss_pred HHHhhhc-------------cCCchhH-------------HHHHHHHHH-HHHhhhhcCCchhhHHHHHHHHHHHHHHHH
Q 020421 143 FSIFKSY-------------TSLTYRS-------------FIFLVVPVQ-ILLSWINSLSALAPFSIFADICNVLAMTLV 195 (326)
Q Consensus 143 ~~l~~~~-------------~~~~~~~-------------~~~i~~~~~-~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i 195 (326)
.++.... .+-+.|. +.+++.+++ +|+. .-++++.++++++.....+......
T Consensus 172 m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpft-f~diqktk~iqiltslmrw~~~~~g 250 (319)
T KOG3832|consen 172 MNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFT-FADIQKTKHIQILTSLMRWAAFILG 250 (319)
T ss_pred hhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCcee-EeccccchhHHHHHHHHHHHhccch
Confidence 6654433 0111111 122222222 2332 3488899999999988888765544
Q ss_pred HHhh-hhhhhcCCCCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhcc
Q 020421 196 VKED-VQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRER 250 (326)
Q Consensus 196 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 250 (326)
+.-+ .+. +.+..+..|+. ..+-++-+.++..+|+|.+|++.|.....++.+
T Consensus 251 ~~l~tmqa---eedaa~a~p~a-rc~cgfgkl~~~aly~~~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 251 ISLATMQA---EEDAAAAHPPA-RCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK 302 (319)
T ss_pred hhhhhhhh---cccccccCCcc-ccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence 4332 221 11122222221 146778888999999999999999998887754
|
|
| >TIGR03428 ureacarb_perm permease, urea carboxylase system | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-09 Score=102.83 Aligned_cols=245 Identities=13% Similarity=0.106 Sum_probs=153.4
Q ss_pred CCCCCCHHHHHHHHHHhh-hhhhcchhHH-HHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchh
Q 020421 28 VTGTASAAQTLGNIIVSI-VGTGVLGLPF-AFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGD 105 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~-iG~GiL~LP~-~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~ 105 (326)
-+|+.+.++.+..-++.+ ++.|+..++. +..++|- ..+...++.++........+.|....+|.. ....+
T Consensus 11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~a-------GG~Y~ 82 (475)
T TIGR03428 11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPIS-------GAIYQ 82 (475)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-------CCHHH
Confidence 567799999999888875 8999998765 5566666 457778888888888898999998888632 33344
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhc------cCCc---h--hHHHH-HHHHHHHHHhhhhc
Q 020421 106 LGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSY------TSLT---Y--RSFIF-LVVPVQILLSWINS 173 (326)
Q Consensus 106 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~------~~~~---~--~~~~~-i~~~~~~pl~~~~~ 173 (326)
.+++.+||...++..+..++................+..+.+.. .... . ..+.+ +..+++..+...+.
T Consensus 83 ~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g 162 (475)
T TIGR03428 83 WSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIG 162 (475)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhh
Confidence 57889999999999998888766555555545444444432211 0010 1 11222 22222333444556
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCC-CC-ccccccccc-ccchhhHHHHHHHhhccccchhchHhhhhcc
Q 020421 174 LSALAPFSIFADICNVLAMTLVVKEDVQKILGGEF-SF-SDRKAVSSN-IRGLPFAGGMAVFCFEGFGMTFALESSMRER 250 (326)
Q Consensus 174 l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~-~~~~~~~~~-~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 250 (326)
.+...+++....+..+..+++++.........+.. .. ........+ ...+..+.....|+|.|.+...++.+|+|||
T Consensus 163 ~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP 242 (475)
T TIGR03428 163 VEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNP 242 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCc
Confidence 67777777766655444444333332222111000 00 010011111 2234456667789999999999999999999
Q ss_pred cc-hHHHHHHHHHHHHHHHHHHHhHhhhhcC
Q 020421 251 GR-FSKLLAQAFTGITLVYVMFGFFGFMAYG 280 (326)
Q Consensus 251 ~~-~~~~~~~~~~~~~~~y~~~~~~gy~~fG 280 (326)
+| .||++..++.++.++|...-+......+
T Consensus 243 ~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 243 RRVAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 66 9999999999887766666555444443
|
A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon. |
| >PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.8e-10 Score=109.46 Aligned_cols=233 Identities=18% Similarity=0.209 Sum_probs=161.0
Q ss_pred HHHhhhhhhcch-hHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHhhhhhhHHHH
Q 020421 41 IIVSIVGTGVLG-LPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLT 119 (326)
Q Consensus 41 l~~~~iG~GiL~-LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~ 119 (326)
.+++++|+|++. .+.+..++|....++..++.++....+...+.|...+.+ +..++.+.+++.+||..++.+
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-------~~Gg~y~y~~~~lg~~~Gf~~ 78 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-------SAGGFYAYASRGLGPALGFAA 78 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-------cccchhhhhhhccCCcCCcee
Confidence 467889999774 677899999988889999999999999999999999985 444666778999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhHHHH--hhhccCCchhHH----HHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHH
Q 020421 120 EFLIFTSQCGGSVAYLVFIGQNLFSI--FKSYTSLTYRSF----IFLVVPVQILLSWINSLSALAPFSIFADICNVLAMT 193 (326)
Q Consensus 120 ~~~~~~~~~g~~~~y~i~~~~~l~~l--~~~~~~~~~~~~----~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 193 (326)
.+..++.............+..++.+ .++.. ....| ..++.++ +......+.+...++.....+..+..++
T Consensus 79 gw~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~-~~~l~~~gv~~~~~~~~~~~~i~~~~li 155 (478)
T PF00324_consen 79 GWAYWLSYIAAIAAEATAAGSFLQFWGYFPGLP--STWVWGILIAIIFILL-ITLLNLFGVRVSGKIEFILTIIKLIALI 155 (478)
T ss_pred eHHHHHHHHHHHHhhhhhhhhhhcccccccccc--ccccccchhhhhhhhh-hhhhhhhhhhccchHHHHHHHHhhhHhh
Confidence 99988888888887777777766666 44421 01222 2222222 2233334555555555444444433333
Q ss_pred HHHHhh-hhhhhcCCCCCc-----cc---cccc--------ccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHH
Q 020421 194 LVVKED-VQKILGGEFSFS-----DR---KAVS--------SNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSK 255 (326)
Q Consensus 194 ~i~~~~-~~~~~~~~~~~~-----~~---~~~~--------~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~ 255 (326)
.++... +.....+.+... +. +.++ .++.++..++...+++|.|.+......+|.||||| +||
T Consensus 156 ~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPr 235 (478)
T PF00324_consen 156 AFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPR 235 (478)
T ss_pred hhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhh
Confidence 333333 111011010000 00 0111 13788999999999999999999999999999976 999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhcCCCc
Q 020421 256 LLAQAFTGITLVYVMFGFFGFMAYGDDT 283 (326)
Q Consensus 256 ~~~~~~~~~~~~y~~~~~~gy~~fG~~~ 283 (326)
+...++..+.++|.......-...+.+.
T Consensus 236 a~~~~~~~~~v~y~~~~~~~~~~~~~~~ 263 (478)
T PF00324_consen 236 ATLLSVLRIGVFYVLTSYALTLAVPYDN 263 (478)
T ss_pred HhhhhhhhhhhhhhhhhhhcccccCccc
Confidence 9999999999999998887666666444
|
A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane |
| >PRK15238 inner membrane transporter YjeM; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-08 Score=95.89 Aligned_cols=237 Identities=15% Similarity=0.103 Sum_probs=134.3
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHH-HHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLST-YYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
.+++.+.++.++..+++++|.+ .+|.++.+.|... ++..++.+++. ......+.|....+|++. .+.+ +.
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~~-i~~~~i~~~~~~l~~al~~aEL~s~~P~~a---GG~Y---~w 75 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYSA-IPWYILSAILFFIPFALMMAEYGSAFKDEK---GGIY---SW 75 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCC---CcHH---HH
Confidence 3567999999999999999976 5688888888753 55555555553 445667788877775210 2334 44
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhHHHHHHH---------HHHhHHHHhhhccCCchh-HHHH--HHHHHHHHHhhhhcC
Q 020421 107 GYKCMGKAGRFLTEFLIFTSQCGGSVAYLVF---------IGQNLFSIFKSYTSLTYR-SFIF--LVVPVQILLSWINSL 174 (326)
Q Consensus 107 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~---------~~~~l~~l~~~~~~~~~~-~~~~--i~~~~~~pl~~~~~l 174 (326)
.++++||+.+++..+..+............. .+....+..+. .+.+.. ...+ +..+.++-....+.+
T Consensus 76 ~~~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~t~vn~~g~ 154 (496)
T PRK15238 76 MNKSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHF-LGLNSTQVVGILAVIWMILVTFVASKGI 154 (496)
T ss_pred HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhh-hcccchHHHHHHHHHHHHHHHHHHccch
Confidence 7899999988876655444333222111110 01111110000 011111 1112 222223334556677
Q ss_pred CchhhHHHHHHHHHHHHHH-HHH---HhhhhhhhcCCCCC------cc-cccccccccchhhHHHHHHHhhccccchhch
Q 020421 175 SALAPFSIFADICNVLAMT-LVV---KEDVQKILGGEFSF------SD-RKAVSSNIRGLPFAGGMAVFCFEGFGMTFAL 243 (326)
Q Consensus 175 ~~l~~~s~~~~~~~~~~~~-~i~---~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i 243 (326)
+..++++.++....+...+ .++ ............+. +. .+.+. +..++..++....|+|.|.+.....
T Consensus 155 ~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~G~e~~~~~ 233 (496)
T PRK15238 155 NKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQ-SPIAVLSFVVFAIFAYGGIEAVGGL 233 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccc-cchHHHHHHHHHHHHHHhHHHHHHH
Confidence 7777777665443322111 111 11101000000010 00 01111 1234667778889999999999999
Q ss_pred Hhhhhcccc-hHHHHHHHHHHHHHHHHHHHhHh
Q 020421 244 ESSMRERGR-FSKLLAQAFTGITLVYVMFGFFG 275 (326)
Q Consensus 244 ~~~m~~p~~-~~~~~~~~~~~~~~~y~~~~~~g 275 (326)
.+|+|||+| .||++..+...+.++|....+..
T Consensus 234 a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 234 VDKTENPEKNFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HHhccCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999865 99999999999999999875544
|
|
| >TIGR00907 2A0304 amino acid permease (GABA permease) | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.7e-08 Score=93.12 Aligned_cols=238 Identities=11% Similarity=0.044 Sum_probs=139.1
Q ss_pred CCCCCCHHHHHHHHHHhhhh--hhcch-hHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcch
Q 020421 28 VTGTASAAQTLGNIIVSIVG--TGVLG-LPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYG 104 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG--~GiL~-LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~ 104 (326)
.+|+.+.++.+...++. +| .|+.. .+.+..++|....+...++.+++.......+.|.....|. .....
T Consensus 10 l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~-------~Gg~y 81 (482)
T TIGR00907 10 LKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPT-------SGGQY 81 (482)
T ss_pred eecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCC-------CccHH
Confidence 56678899888887774 44 66654 4567778888666788999999999999999999988853 33344
Q ss_pred hhHHHhhh----hhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccC---CchhHHH--HHH--HHHHHHHhhhhc
Q 020421 105 DLGYKCMG----KAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTS---LTYRSFI--FLV--VPVQILLSWINS 173 (326)
Q Consensus 105 ~l~~~~~G----~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~---~~~~~~~--~i~--~~~~~pl~~~~~ 173 (326)
+.+++++| +...++..+..++.....+.+.....++.+..+.....+ .....|. .+. ....+.+.....
T Consensus 82 ~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g 161 (482)
T TIGR00907 82 FWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLP 161 (482)
T ss_pred HHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhh
Confidence 44666666 455677777777776666666666666666654422110 1111121 121 222233334445
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCC----Cccc-c---cccccccchhhHHHHHHHhhccccchhchHh
Q 020421 174 LSALAPFSIFADICNVLAMTLVVKEDVQKILGGEFS----FSDR-K---AVSSNIRGLPFAGGMAVFCFEGFGMTFALES 245 (326)
Q Consensus 174 l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~-~---~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 245 (326)
.+...+++....+..++..+++.........++..+ ..+. + .+..+...+..++....|+|.|.+......+
T Consensus 162 ~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~ 241 (482)
T TIGR00907 162 TKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAE 241 (482)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHH
Confidence 555555555544333333221111111110000000 0000 0 1111112344555567799999999999999
Q ss_pred hhhcccc-hHHHHHHHHHHHHHHHHHHHh
Q 020421 246 SMRERGR-FSKLLAQAFTGITLVYVMFGF 273 (326)
Q Consensus 246 ~m~~p~~-~~~~~~~~~~~~~~~y~~~~~ 273 (326)
|+|||+| +||++..+..+..++++...+
T Consensus 242 E~knP~r~iP~Ai~~s~~i~~~~~~~~~l 270 (482)
T TIGR00907 242 EIENPEVVGPRAIIGAVAIGIVTGFCFNI 270 (482)
T ss_pred hcCChhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 9999866 999999988777665444333
|
|
| >TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-07 Score=88.83 Aligned_cols=233 Identities=14% Similarity=0.111 Sum_probs=125.8
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHH--HHHHHHHHHHHHHhc-cccCCCCCcCcch
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLST--YYCMLLLIQCRDKLV-SEDTSSTETKTYG 104 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~--~~~~~~l~~~~~~~~-~~~~~~~~~~~y~ 104 (326)
++++++.+..++..+.++. ++..+| .+++.|+- .+...+.+.+. .-......|.....+ .+ .+.+.|
T Consensus 2 ~~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~~--~i~~~i~~~l~~~lp~al~~AELas~~p~~~----GG~y~w- 71 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVL--AVYEYP-TFATSGFH--LVFFLLLGGILWFIPVALCAAEMATVDGWEE----GGIFAW- 71 (507)
T ss_pred CCcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHcccCCCC----CCeeee-
Confidence 3456899988888877775 446788 47777753 33333333333 336666677766653 21 455555
Q ss_pred hhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHH-HH---HHHHHHHHHhhhhcCCchhhH
Q 020421 105 DLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSF-IF---LVVPVQILLSWINSLSALAPF 180 (326)
Q Consensus 105 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~-~~---i~~~~~~pl~~~~~l~~l~~~ 180 (326)
+++++|++.++...+..++................+...... ...+...+ .. +..+..+.+...+..+...++
T Consensus 72 --v~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i 148 (507)
T TIGR00910 72 --VSNTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKF-PALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKI 148 (507)
T ss_pred --hhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 799999998888877777755432222221222212222111 01122112 22 222222334445566666666
Q ss_pred HHHHHHHHHHH-HHHHHHhhhhhhhcCCCCCc--cccccccccc--chhhHHHHHHHhhccccchhchHhhhhcccc-hH
Q 020421 181 SIFADICNVLA-MTLVVKEDVQKILGGEFSFS--DRKAVSSNIR--GLPFAGGMAVFCFEGFGMTFALESSMRERGR-FS 254 (326)
Q Consensus 181 s~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~ 254 (326)
+..+.+..... .++++.........+.+... +...+.+++. +....+...+|+|.|.+......+|+|||+| +|
T Consensus 149 ~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~P 228 (507)
T TIGR00910 149 AKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYP 228 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCccccc
Confidence 65543322221 22222111111111111100 1111111232 2334444568999999999999999999965 99
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 020421 255 KLLAQAFTGITLVYVMFGF 273 (326)
Q Consensus 255 ~~~~~~~~~~~~~y~~~~~ 273 (326)
|++..++.++.++|....+
T Consensus 229 rAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 229 LAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999988888876544
|
Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009 |
| >TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-06 Score=81.63 Aligned_cols=238 Identities=15% Similarity=0.132 Sum_probs=127.0
Q ss_pred CCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHH-HHHHHHHHHHHHhccccCCCCCcCcchhhHHH
Q 020421 31 TASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTY-YCMLLLIQCRDKLVSEDTSSTETKTYGDLGYK 109 (326)
Q Consensus 31 ~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~ 109 (326)
+++.+.-++..+.++++ +-.+|.+ ++.|... ++.+++.+++.. -......|.....|++ .+.+ +..++
T Consensus 2 ~~~~~~l~~~~~~~v~~--~~~~~~~-a~~G~~~-~~~~~i~~~~~~ip~al~~aEL~~~~P~~----GG~y---~~~~~ 70 (474)
T TIGR03813 2 KLTVVTLAIMNITAVVS--LRGLPAE-AEYGLSA-AFYYLFAAIFFLVPVSLVAAELATAWPEK----GGVF---RWVGE 70 (474)
T ss_pred cccHHHHHHHHHHHHHH--hhcchHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHccCCCC----CCce---eeHhh
Confidence 35666555555555444 3445654 5777633 555555555443 4666777777776532 3344 44899
Q ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhc---cCCchhHHH-H---HHHHHHHHHhhhhcCCchhhHHH
Q 020421 110 CMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSY---TSLTYRSFI-F---LVVPVQILLSWINSLSALAPFSI 182 (326)
Q Consensus 110 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~---~~~~~~~~~-~---i~~~~~~pl~~~~~l~~l~~~s~ 182 (326)
++|+..++...+..++........-+...+..+....+.. .......|. . +.....+.....++++...+++.
T Consensus 71 a~G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~ 150 (474)
T TIGR03813 71 AFGARWGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAK 150 (474)
T ss_pred hcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 9999999999888877664322222222222222111110 012222222 1 12222233345566666666665
Q ss_pred HHHHH-HHHHHHHHHHhhhhhhhcCCCCCc--c-cccccc--cccchhhHHHHHHHhhccccchhchHhhhhcccc-hHH
Q 020421 183 FADIC-NVLAMTLVVKEDVQKILGGEFSFS--D-RKAVSS--NIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSK 255 (326)
Q Consensus 183 ~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~--~-~~~~~~--~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~ 255 (326)
..... .++..++++..++.....+.++.. + .+.++. ++.+...+. ...|+|.|.+......+|+|||+| .+|
T Consensus 151 ~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP~r~iPr 229 (474)
T TIGR03813 151 WGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNPDKNYPI 229 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCcccchhH
Confidence 43221 222112222221111111111100 0 011111 233343333 457899999999999999999865 999
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhcC
Q 020421 256 LLAQAFTGITLVYVMFGFFGFMAYG 280 (326)
Q Consensus 256 ~~~~~~~~~~~~y~~~~~~gy~~fG 280 (326)
++..+..++.++|+...+.-....+
T Consensus 230 Ai~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 230 AILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999987765544444
|
Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain. |
| >COG3949 Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.4e-05 Score=69.90 Aligned_cols=227 Identities=12% Similarity=0.102 Sum_probs=141.0
Q ss_pred HHHHHHHHHhhhhhhcch---hHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHhh
Q 020421 35 AQTLGNIIVSIVGTGVLG---LPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCM 111 (326)
Q Consensus 35 ~~~~~~l~~~~iG~GiL~---LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~ 111 (326)
.+-.+..+++++|+|.=+ .=.-|..-|+.. ....++++.+...+...+.+...+. +..+|.|.-+..+
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~s-~~gIivs~vlf~~~g~vim~ig~~f--------~a~~y~~~~~~v~ 76 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVYS-ILGIILSTVLFTLSGAVIMTIGKKF--------NATSYREILKYVS 76 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHh--------cccchHHHHHHHh
Confidence 345567788999999443 223355667755 6667777777777887777888885 5569999999999
Q ss_pred hhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHH-HHHHHHHHHHhhhhcCCchhhHHHHHHHHHHH
Q 020421 112 GKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFI-FLVVPVQILLSWINSLSALAPFSIFADICNVL 190 (326)
Q Consensus 112 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~-~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 190 (326)
||+..++.|..+.+.+++.++..+...+..+++.++- +.++. ++...++..+.+.++.+.+-.++.+-.-..++
T Consensus 77 ~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~l-----P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi 151 (349)
T COG3949 77 GPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL-----PYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLII 151 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCc-----cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHH
Confidence 9999999999999999999999999999888887753 33344 45555555667777788877666655544444
Q ss_pred HHHHHHHhhhhhhhcCCCCCcccccccccccchhhHHHHHHHhh-ccccchhchHhhhhcccchHHHHHHHHHHHHHHHH
Q 020421 191 AMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCF-EGFGMTFALESSMRERGRFSKLLAQAFTGITLVYV 269 (326)
Q Consensus 191 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~y~ 269 (326)
....+.......-. ++....+.+. .++|.... .+=..+.. .+..++.++.++||+|+...+....+-.+.+++..
T Consensus 152 ~l~~v~~~~~f~~~-~~~a~~~~~~-~~~W~~~~--~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~gglIlgvl~~ 227 (349)
T COG3949 152 ILVLVTLSFQFTNL-GNAAQIVLTK-QGNWKASA--VGYGALNILVAVAVLVPLGGRMESRKVSGIGGLIGGLILGVLLF 227 (349)
T ss_pred HHHHHHHHHHHhhc-cchhhhcCCc-CCChHHHH--HhhhhHHHHhHhHhhhhhcccccccchhhhhhhhhhHHHHHHHH
Confidence 32222211111101 1111111111 11232211 11111111 24556678889999988877766666666655555
Q ss_pred HHHhHhhhhc
Q 020421 270 MFGFFGFMAY 279 (326)
Q Consensus 270 ~~~~~gy~~f 279 (326)
..-..-...+
T Consensus 228 l~nlsLi~~~ 237 (349)
T COG3949 228 LINLSLIALY 237 (349)
T ss_pred HHHHHHHhhc
Confidence 4444333333
|
|
| >KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=7.9e-06 Score=76.09 Aligned_cols=260 Identities=12% Similarity=0.125 Sum_probs=138.7
Q ss_pred CCCCCCHHHHHHHHHHh---hhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcc-
Q 020421 28 VTGTASAAQTLGNIIVS---IVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTY- 103 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~---~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y- 103 (326)
-+|+.|.++.+..-++. .-|.. -++++-+...|...-.-.+++++.+......-|.|....+|.. +..-|
T Consensus 46 f~R~fs~~s~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~Pts-----GgLy~w 119 (550)
T KOG1289|consen 46 LKREFSLFSIFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTS-----GGLYFW 119 (550)
T ss_pred hhhhhhHHHHHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCC-----CcHHHH
Confidence 46677777655443332 11111 1234444445555555568888999999999999999998742 22222
Q ss_pred -hhhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhc-cCC---chhHHHHHHHHHHHHHhhhh--cCCc
Q 020421 104 -GDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSY-TSL---TYRSFIFLVVPVQILLSWIN--SLSA 176 (326)
Q Consensus 104 -~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~-~~~---~~~~~~~i~~~~~~pl~~~~--~l~~ 176 (326)
.+++-+-+||...+++.+...+.+.....+--...++.+.....-. .+. +...+. +...+.+..+++. .-+.
T Consensus 120 aa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~-v~~ai~~v~~lln~~p~r~ 198 (550)
T KOG1289|consen 120 AAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFG-VFEAILFVHGLLNSLPTRV 198 (550)
T ss_pred HHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeeh-HHHHHHHHHHHHhcCCcHH
Confidence 2223334444455555544444333333333333333333322221 111 112222 2222323333332 2234
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhh----hh-hcCC----CCCcccccccccccchhhHHHHHHHhhccccchhchHhhh
Q 020421 177 LAPFSIFADICNVLAMTLVVKEDVQ----KI-LGGE----FSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSM 247 (326)
Q Consensus 177 l~~~s~~~~~~~~~~~~~i~~~~~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m 247 (326)
+++++.++....++.+++..+.... +. .++. ...++...|+.+-..+...+-...+.+.|...-.++.+|.
T Consensus 199 l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~ 278 (550)
T KOG1289|consen 199 LARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEET 278 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHh
Confidence 5566666555444433333222111 10 1100 1123344444334456666778889999999999999999
Q ss_pred hcccc-hHHHHHHHHHHHHHHHHHHHhHhhhhcCCCchhhHhhcCCCC
Q 020421 248 RERGR-FSKLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLNLPKD 294 (326)
Q Consensus 248 ~~p~~-~~~~~~~~~~~~~~~y~~~~~~gy~~fG~~~~~~il~n~~~~ 294 (326)
||++| .||....+..+..++=..+-+.-.+.-+++.+..+..+.++.
T Consensus 279 ~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p 326 (550)
T KOG1289|consen 279 KNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQP 326 (550)
T ss_pred cchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCCh
Confidence 99855 899988888888777777766666677765555555554443
|
|
| >TIGR00800 ncs1 NCS1 nucleoside transporter family | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00023 Score=67.14 Aligned_cols=243 Identities=12% Similarity=0.050 Sum_probs=143.0
Q ss_pred CCCHHHHHHHHHHhhhhhhcchhHHHHHh--hcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHH
Q 020421 31 TASAAQTLGNIIVSIVGTGVLGLPFAFRV--AGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGY 108 (326)
Q Consensus 31 ~~s~~~~~~~l~~~~iG~GiL~LP~~~~~--~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~ 108 (326)
+.++++-+..-++..+...-+.+...... .++..+++..++..++...-..+....-.+ ...++..+.|
T Consensus 13 ~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r---------~Gl~~~v~sR 83 (442)
T TIGR00800 13 TWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAK---------YGLPFPVLSR 83 (442)
T ss_pred CccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHH---------hCCCcchhhh
Confidence 35777666666666665555544443333 445555555555555544444444443333 3457788899
Q ss_pred HhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCC----ch----hHHH--HHHHHHHHHHhhhhcCCchh
Q 020421 109 KCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSL----TY----RSFI--FLVVPVQILLSWINSLSALA 178 (326)
Q Consensus 109 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~----~~----~~~~--~i~~~~~~pl~~~~~l~~l~ 178 (326)
..||.+|..+..+...+...+=........++.+..+++...+. .. ..+. +++..+.+++......+-..
T Consensus 84 ~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~ 163 (442)
T TIGR00800 84 ASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRH 163 (442)
T ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 99999999999999999999999999999998888877764221 10 1222 24444444544454444444
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhh-hcCCC-CCcccccccccccchhhHHHHHHHhh-ccccchhchHhhhhcccchHH
Q 020421 179 PFSIFADICNVLAMTLVVKEDVQKI-LGGEF-SFSDRKAVSSNIRGLPFAGGMAVFCF-EGFGMTFALESSMRERGRFSK 255 (326)
Q Consensus 179 ~~s~~~~~~~~~~~~~i~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~~i~~~m~~p~~~~~ 255 (326)
+....+....+..+...++...... ..+.. ..++.+. +.....+..++...+=.+ ..-.+.+.+.|.+|+|++-.+
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~~ 242 (442)
T TIGR00800 164 LFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHG-STGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAIW 242 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCc-chhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchHH
Confidence 5555555444444333332222211 00000 0010111 112445666665544333 344677899999999887777
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhh----cCCCc
Q 020421 256 LLAQAFTGITLVYVMFGFFGFMA----YGDDT 283 (326)
Q Consensus 256 ~~~~~~~~~~~~y~~~~~~gy~~----fG~~~ 283 (326)
...+++....+....+|+.+-.. +|+..
T Consensus 243 ~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 243 GQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 77888888888888888877765 77543
|
The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism. |
| >PRK11375 allantoin permease; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0016 Score=61.94 Aligned_cols=211 Identities=9% Similarity=-0.004 Sum_probs=114.9
Q ss_pred hcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHhhhhhhHHHHHHHHH-HHHhhhHHHHHHHH
Q 020421 60 AGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIF-TSQCGGSVAYLVFI 138 (326)
Q Consensus 60 ~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~-~~~~g~~~~y~i~~ 138 (326)
.+++.+++..++..++...-..+...... +...++.-++|..||.+|.++..+... +..++=........
T Consensus 57 Ls~~~ai~ai~lG~~i~~~~~~l~g~~G~---------~~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~ 127 (484)
T PRK11375 57 LSTFSIMLAIILSAFFIAAVMVLNGAAGS---------KYGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAG 127 (484)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhccccc---------ccCCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444433333332222 245678889999999999888888774 46666666666667
Q ss_pred HHhHHHHhhhcc-------------CCchhHHHH--HHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020421 139 GQNLFSIFKSYT-------------SLTYRSFIF--LVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKI 203 (326)
Q Consensus 139 ~~~l~~l~~~~~-------------~~~~~~~~~--i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~ 203 (326)
++.+..++.... +.+...+.. ++.++..++. ....+.++++...+.....+..+.+.+..+...
T Consensus 128 g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~-~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~ 206 (484)
T PRK11375 128 SLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIG-FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV 206 (484)
T ss_pred HHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 777665554421 112222322 4444444444 456677777777776666555444444444432
Q ss_pred hcCCCCCccc-c----cccccccchhhHHHHHHHhhc-cccchhchHhhhhcccchHHHHHHHHHHHHHHHHHHHhHh--
Q 020421 204 LGGEFSFSDR-K----AVSSNIRGLPFAGGMAVFCFE-GFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFG-- 275 (326)
Q Consensus 204 ~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~~~~g-- 275 (326)
. ..+..+. + ........+..++...+=++. ...+.|.+.|..|++++-.+...+++.+...+...+|+..
T Consensus 207 -g-~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~ 284 (484)
T PRK11375 207 -G-IGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIA 284 (484)
T ss_pred -C-CchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111000 0 000112234444433333443 4458899999999988877776677777766665555433
Q ss_pred --hhhcCCC
Q 020421 276 --FMAYGDD 282 (326)
Q Consensus 276 --y~~fG~~ 282 (326)
...||+.
T Consensus 285 ~a~~~~g~~ 293 (484)
T PRK11375 285 GASIHYGAD 293 (484)
T ss_pred HHHHHhCCC
Confidence 3456543
|
|
| >TIGR00813 sss transporter, SSS family | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0039 Score=58.15 Aligned_cols=155 Identities=15% Similarity=0.039 Sum_probs=105.4
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-cchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhH
Q 020421 29 TGTASAAQTLGNIIVSIVGTG-VLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLG 107 (326)
Q Consensus 29 ~~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 107 (326)
.|+.+++...+.+..+.+|++ .++.|....+.|+.. ....+..............+..++ .+..|..|+-
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~T~~e~l 72 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAI-GFYELGALVLLIILGWLFVPIFIN--------NGAYTMPEYL 72 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH--------cCCCchhHHH
Confidence 456788888888888888877 457898888888643 222222222233334444444333 4678999999
Q ss_pred HHhhhh-hhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHH
Q 020421 108 YKCMGK-AGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADI 186 (326)
Q Consensus 108 ~~~~G~-~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 186 (326)
++-||+ ..+.+..+...+..+......+...+..++.+.+ .+...-.++..+++......-.++...+...+-.+
T Consensus 73 ~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g----i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~ 148 (407)
T TIGR00813 73 EKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG----LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAV 148 (407)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 999998 4777777777788888888888888888888764 35444444555555566777889998888888766
Q ss_pred HHHHHHHHHH
Q 020421 187 CNVLAMTLVV 196 (326)
Q Consensus 187 ~~~~~~~~i~ 196 (326)
.++...+++.
T Consensus 149 i~~~~~i~~~ 158 (407)
T TIGR00813 149 IMILGTFILP 158 (407)
T ss_pred HHHHHHHHHH
Confidence 6555443333
|
have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli. |
| >TIGR02119 panF sodium/pantothenate symporter | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0038 Score=59.41 Aligned_cols=237 Identities=11% Similarity=0.032 Sum_probs=135.0
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhc-chhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHH----HHHHHHhccccCCCCCcCc
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGV-LGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLL----IQCRDKLVSEDTSSTETKT 102 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~ 102 (326)
..|+.+++.....+..+.+|++. +..|...++.|+....... ......+++...+ .+..++ .+..|
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~T 108 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAM-IQVPTGYFVLGVLGKKFAIISRK--------YNAIT 108 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH--------cCCcc
Confidence 45678999999999999999884 4788888888874311111 1111112222222 222222 47789
Q ss_pred chhhHHHhhhhh-hHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHH
Q 020421 103 YGDLGYKCMGKA-GRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFS 181 (326)
Q Consensus 103 y~~l~~~~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 181 (326)
..|+-++-||++ .+.+..+...+..++.....+...+..++.+++ .+.....++..+++........++...+..
T Consensus 109 ~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g----i~~~~~iii~~~iv~iYt~~GG~~av~~td 184 (471)
T TIGR02119 109 INDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG----LSYLTALFIFSSSVLIYTTFGGFRAVALTD 184 (471)
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999965 567777777777777777777777877777765 455555555556566677788899988888
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh------hc---CCCCCccccccc-cccc--chhhHHH-HHHHhhccccchhchHhhhh
Q 020421 182 IFADICNVLAMTLVVKEDVQKI------LG---GEFSFSDRKAVS-SNIR--GLPFAGG-MAVFCFEGFGMTFALESSMR 248 (326)
Q Consensus 182 ~~~~~~~~~~~~~i~~~~~~~~------~~---~~~~~~~~~~~~-~~~~--~~~~~~~-~~~faf~~~~~i~~i~~~m~ 248 (326)
.+-.+.+++...++......+. .+ +.++ +...++. .++. .....+. ...+...+.+....-.-..|
T Consensus 185 ~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aak 263 (471)
T TIGR02119 185 AIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDP-NLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCMSYK 263 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCc-cccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHHhcC
Confidence 8877666655444443333321 00 0000 0001110 0111 1111111 11222223332222222346
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhHhhhh
Q 020421 249 ERGRFSKLLAQAFTGITLVYVMFGFFGFMA 278 (326)
Q Consensus 249 ~p~~~~~~~~~~~~~~~~~y~~~~~~gy~~ 278 (326)
++|+.+|...++..+...+++...+.|..+
T Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~G~~a 293 (471)
T TIGR02119 264 DSKAMHRAMIIGTIVVGIIMLGMHLAGVLG 293 (471)
T ss_pred CHHHHhhhHhHHHHHHHHHHHHHHHHHHhh
Confidence 667788888877766666666666655443
|
Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi. |
| >PRK09442 panF sodium/panthothenate symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0047 Score=58.97 Aligned_cols=236 Identities=11% Similarity=0.038 Sum_probs=130.7
Q ss_pred CCCCCCHHHHHHHHHHhhhhhh-cchhHHHHHhhcHhhHHHHH--HHHH-HHHHHHHHHHHHHHHHhccccCCCCCcCcc
Q 020421 28 VTGTASAAQTLGNIIVSIVGTG-VLGLPFAFRVAGWLAGCLGV--MIAG-LSTYYCMLLLIQCRDKLVSEDTSSTETKTY 103 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~~--i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y 103 (326)
..|+.+++...+.+..+.+|++ .+..|...++.|+....... .... +...+-...+.+..++ .+..|.
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~--------~~~~T~ 110 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARK--------YNAVTL 110 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------cCCccH
Confidence 3566788888888888888776 55788877777764311111 1111 1111112222222333 477899
Q ss_pred hhhHHHhhhhh-hHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHH
Q 020421 104 GDLGYKCMGKA-GRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSI 182 (326)
Q Consensus 104 ~~l~~~~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 182 (326)
.|+-++-||++ .+.+..+...+..+......+...+..++.+++ .+.....++..++++.......++...+...
T Consensus 111 ~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g----i~~~~~iii~~~iv~iYt~~GGl~av~~TD~ 186 (483)
T PRK09442 111 NDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG----ISYETGLLIFGITVALYTAFGGFRAVVLTDA 186 (483)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 99999999865 456666656666666667777777777777764 4555444555666666788889999888888
Q ss_pred HHHHHHHHHHHHHHHhhhhhh------hcC--CCCCcccccc-cccccchhhHHH---HHHHhhccccchhchHhh--hh
Q 020421 183 FADICNVLAMTLVVKEDVQKI------LGG--EFSFSDRKAV-SSNIRGLPFAGG---MAVFCFEGFGMTFALESS--MR 248 (326)
Q Consensus 183 ~~~~~~~~~~~~i~~~~~~~~------~~~--~~~~~~~~~~-~~~~~~~~~~~~---~~~faf~~~~~i~~i~~~--m~ 248 (326)
+-.+.++...+++........ .+. ..+.+...+. +.++.+.....+ ...+...+.+.. .++- .|
T Consensus 187 iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~--~qR~~aak 264 (483)
T PRK09442 187 LQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHT--AVRCMSYK 264 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHH--HHHHHHcC
Confidence 876665555444433332221 000 0000000111 011111111111 112222233222 3333 46
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhHhhh
Q 020421 249 ERGRFSKLLAQAFTGITLVYVMFGFFGFM 277 (326)
Q Consensus 249 ~p~~~~~~~~~~~~~~~~~y~~~~~~gy~ 277 (326)
++|+.+|...++......+++...+.|..
T Consensus 265 s~~~a~~~~~~~~~~~~~~~~~~~~~G~~ 293 (483)
T PRK09442 265 DSKALHRGIIIGTIVVGFLMFGMHLAGAL 293 (483)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888877777777766666533
|
|
| >TIGR00835 agcS amino acid carrier protein | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00043 Score=64.07 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=95.7
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-cchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcc----
Q 020421 29 TGTASAAQTLGNIIVSIVGTG-VLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTY---- 103 (326)
Q Consensus 29 ~~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y---- 103 (326)
+++.|.+|+.+....+.+|+| |+..|-+....| ..++..+-+.+++..-+.+.-+....++++++ ++.+|
T Consensus 44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~----~~g~~~GGP 118 (425)
T TIGR00835 44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERD----ADGVFRGGP 118 (425)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeC----CCCCEecCh
Confidence 456999999999999999998 999999966665 66677777777777766666666666665432 22234
Q ss_pred -hhhHHHhhhhhhHHHHHHHHHHHHhh-hHHHHHHHHHHhHHHHhhhccCCchhHHHH-HHHHHHHHHhhhhcCCchhhH
Q 020421 104 -GDLGYKCMGKAGRFLTEFLIFTSQCG-GSVAYLVFIGQNLFSIFKSYTSLTYRSFIF-LVVPVQILLSWINSLSALAPF 180 (326)
Q Consensus 104 -~~l~~~~~G~~~~~~~~~~~~~~~~g-~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~ 180 (326)
..+-+...|||...+..++ .+..++ .........++.+++.+ +...|.. +...++........++.+..+
T Consensus 119 ~yyi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~------~~~~~v~~i~l~~l~~~vi~GGik~Ia~v 191 (425)
T TIGR00835 119 MYYIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF------NVPKLVTGIVLTVLTALIIFGGLKRIAKI 191 (425)
T ss_pred HHHHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 6667777888877776666 333322 33444444444444322 2223433 444444444556688888877
Q ss_pred HHHHHHHHHH
Q 020421 181 SIFADICNVL 190 (326)
Q Consensus 181 s~~~~~~~~~ 190 (326)
+...+..+..
T Consensus 192 ~~~lvP~m~~ 201 (425)
T TIGR00835 192 SSVVVPFMAL 201 (425)
T ss_pred HHHHHHHHHH
Confidence 7766554433
|
Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+. |
| >TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0035 Score=58.02 Aligned_cols=207 Identities=10% Similarity=0.016 Sum_probs=127.5
Q ss_pred hcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHH
Q 020421 60 AGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIG 139 (326)
Q Consensus 60 ~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~ 139 (326)
.++..++...++..++...-..+....-.+ ...++.-++|..||++|..+..+...+...+--.......+
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~~---------~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg 96 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGAD---------TGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGA 96 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------cCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544444333333222222 45578888999999999999999999999998888888899
Q ss_pred HhHHHHhhhccCCc-hhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcccccccc
Q 020421 140 QNLFSIFKSYTSLT-YRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSS 218 (326)
Q Consensus 140 ~~l~~l~~~~~~~~-~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 218 (326)
+.+..+.+...+.. ...+..+..++..+.+ ....+.++++...+........+...+....+. +.....+. ++
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~---~~ 170 (386)
T TIGR02358 97 KAASLLGGRLFGEESPMLWILIVGILVTLWL-LSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKA--DLSELWNR---AG 170 (386)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhhhcCC---CC
Confidence 99999887542222 2222333333334333 346677788888777766665555444443331 11111111 11
Q ss_pred cccchhhHHHHHHHh-hccccchhchHhhhhcccchHHHHHHHHHHHHHHHHHHHhHhhhhcCCC
Q 020421 219 NIRGLPFAGGMAVFC-FEGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDD 282 (326)
Q Consensus 219 ~~~~~~~~~~~~~fa-f~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~~~~gy~~fG~~ 282 (326)
+ ..+..++...+-. -......+.+.|..|+|+|..+....+..+...+...+|.....+.++.
T Consensus 171 ~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 171 D-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred C-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1 2233333222211 1233457899999998888888888899999999999998887777654
|
On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate. |
| >PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0045 Score=57.68 Aligned_cols=158 Identities=15% Similarity=0.109 Sum_probs=96.8
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-cchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhH
Q 020421 29 TGTASAAQTLGNIIVSIVGTG-VLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLG 107 (326)
Q Consensus 29 ~~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 107 (326)
.|+.+++...+.+..+.+|++ ++..|...++.|+...+ ..+............+.+-.++ .+..|..|+-
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~~~~r~--------~~~~T~~e~~ 75 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLW-YAIGYAIGFLLFALFFAPRLRR--------SGAVTIPEYL 75 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGH-HHHHHHHHHHHHHHHTHHHHHH--------TT--SHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceee-eccccchhHHHHHHHHHHhhcc--------cchhhhhhhh
Confidence 466889999999999999887 55789888888886532 3333333333344444444443 5778999999
Q ss_pred HHhhhhhh--HHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHH
Q 020421 108 YKCMGKAG--RFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFAD 185 (326)
Q Consensus 108 ~~~~G~~~--~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 185 (326)
++-||++. +.+..+...+.........+...+..++.+++ .+.....++..++++.....-.++...+...+-.
T Consensus 76 ~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g----i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~ 151 (406)
T PF00474_consen 76 EKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG----IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQG 151 (406)
T ss_dssp HHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHHTTCTT------SHHHHHH
T ss_pred hhhcCCchhhhhhcccccchhhhhhhhccccccccchhhccc----hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHH
Confidence 99999998 66666666667777777788888887777764 4666555566666666777888888888887776
Q ss_pred HHHHHHHHHHHHhh
Q 020421 186 ICNVLAMTLVVKED 199 (326)
Q Consensus 186 ~~~~~~~~~i~~~~ 199 (326)
+.+++...++....
T Consensus 152 ~i~~~~~~~~~~~~ 165 (406)
T PF00474_consen 152 VIMIIGAIVVLIFV 165 (406)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcc
Confidence 66555544444433
|
Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A. |
| >PRK12488 acetate permease; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0063 Score=58.98 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=103.1
Q ss_pred CCCCCHHHHHHHHHHhhhhhhc-chhHHHHHhhcHhhHHHHHHHHHHHHHHH-HHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 29 TGTASAAQTLGNIIVSIVGTGV-LGLPFAFRVAGWLAGCLGVMIAGLSTYYC-MLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 29 ~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~~~g~i~~i~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
.++.+++...+.+..+.++++. ++.|...+..|+.. .. ..+...+.+.- ..++.+-.++ .+..|..|.
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~-~~~g~~~g~~~~~~~~a~~lr~--------~g~~T~~d~ 135 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LL-YALGVLAGWPIILFLIAERLRN--------LGKYTFADV 135 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HH-HHHHHHHHHHHHHHHHHHHHHH--------CCCcchHHH
Confidence 5678999999999999888885 57998888888743 21 11111122111 1222222222 356799999
Q ss_pred HHHhhh-hhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHH
Q 020421 107 GYKCMG-KAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFAD 185 (326)
Q Consensus 107 ~~~~~G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 185 (326)
-++-|| |..+.+..+...+.........+...+..++.+++ .+...-.++..+++......-.++...+...+-.
T Consensus 136 l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g----i~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~ 211 (549)
T PRK12488 136 VSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG----ISYLYAVVIVGALMVLYVTFGGMLATTWVQIIKA 211 (549)
T ss_pred HHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 888887 56888888877777777777777777777777754 4555445556666666777889999999988887
Q ss_pred HHHHHHHHHHH
Q 020421 186 ICNVLAMTLVV 196 (326)
Q Consensus 186 ~~~~~~~~~i~ 196 (326)
+.++...+++.
T Consensus 212 ~im~~~~i~~~ 222 (549)
T PRK12488 212 VLLLSGTSFMA 222 (549)
T ss_pred HHHHHHHHHHH
Confidence 66665544443
|
|
| >PRK11017 codB cytosine permease; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.017 Score=53.77 Aligned_cols=207 Identities=18% Similarity=0.087 Sum_probs=114.8
Q ss_pred hhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHH
Q 020421 59 VAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFI 138 (326)
Q Consensus 59 ~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~ 138 (326)
..++.-+++..++...+...-..+....-. +...++..++|..||.+|..+..+...+...+=........
T Consensus 38 GLs~~~ai~aiilG~~i~~~~~~l~~~~G~---------k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~ 108 (404)
T PRK11017 38 GLSFVDFLLAVLIGNLLLGIYTAALGYIGA---------KTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMF 108 (404)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh---------ccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345555555555554443333333322222 24558888999999999999998888887777666666666
Q ss_pred HHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcccccccc
Q 020421 139 GQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSS 218 (326)
Q Consensus 139 ~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 218 (326)
++.+....+ .+...+.++..++..+.... ..+.+++++..+........+...+....+. .+..+..+.++.
T Consensus 109 ~~~l~~~~~----~~~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~-- 180 (404)
T PRK11017 109 AIPVVKATG----LDINLLIVLSGLLMTVTAYF-GISALTILSRIAVPAIALLGGYSVWLAVNDV-GGLDGLKAIVPA-- 180 (404)
T ss_pred HHHHHHHhC----CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CchhhhhcCCCC--
Confidence 666655443 34444444444554444433 3455555555554444443333333332221 111111111111
Q ss_pred cccchhhHHHHHHHhh-ccccchhchHhhhhcccchHHHHHHHHHHHHHHHHHHHhHhhhhcCCC
Q 020421 219 NIRGLPFAGGMAVFCF-EGFGMTFALESSMRERGRFSKLLAQAFTGITLVYVMFGFFGFMAYGDD 282 (326)
Q Consensus 219 ~~~~~~~~~~~~~faf-~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~y~~~~~~gy~~fG~~ 282 (326)
+...+..++...+=.+ ....+.+.+.|..|+|++.......++.+...+...+|...-.+.|+.
T Consensus 181 ~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~~ 245 (404)
T PRK11017 181 EPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNSLMFIFGAAGAAVYGQA 245 (404)
T ss_pred CcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 2334555555444333 335678899999888877556666777777777777777666667653
|
|
| >COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0079 Score=55.82 Aligned_cols=182 Identities=15% Similarity=0.014 Sum_probs=115.9
Q ss_pred chhhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHH
Q 020421 103 YGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSI 182 (326)
Q Consensus 103 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 182 (326)
--.++|..||.+|..+..+.+.+.+.|-.....+..++..... .+.+...+.++..+++...+.. ..+.+.+++.
T Consensus 83 qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~----~~~~~~~~ili~g~l~~l~~if-G~r~l~~l~~ 157 (442)
T COG1457 83 QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG----TGLPVWAGILIIGVLMTLVTIF-GYRALHKLER 157 (442)
T ss_pred hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC----CCCcHHHHHHHHHHHHHHHHHH-hHHHHHHHHH
Confidence 3455889999999999999999999999999999999873322 2345555555554444433333 5555555666
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCCCcccccccccccchhhHHHHHHHhhccc-cchhchHhhhhccc--chHHHHHH
Q 020421 183 FADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGF-GMTFALESSMRERG--RFSKLLAQ 259 (326)
Q Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~-~~i~~i~~~m~~p~--~~~~~~~~ 259 (326)
.+.....+.+....+..+..... .......+ +.++.++..+++..+=.+... +....+.+.+|+|+ |.-.....
T Consensus 158 ~a~~~~~~lf~~l~~~~~~~~~~-~~~~~~~~--~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~ 234 (442)
T COG1457 158 IAVPLLLLLFLYLLALLFRSKGG-LDALWVKG--PTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVL 234 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc-cceeeccC--CCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHH
Confidence 66555555555555444442101 11111111 224666776666655555444 45567788888877 66667778
Q ss_pred HHHHHHHHHHHHHhHhhhhcCCCc-hhhHhhcCC
Q 020421 260 AFTGITLVYVMFGFFGFMAYGDDT-KDIVTLNLP 292 (326)
Q Consensus 260 ~~~~~~~~y~~~~~~gy~~fG~~~-~~~il~n~~ 292 (326)
+......+-..+|...-.+=|+.. ..++...+.
T Consensus 235 G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G 268 (442)
T COG1457 235 GFFLGTSFMMILGAALAAAAGNADSIADVMLGLG 268 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhcc
Confidence 888888888889988888888777 455555554
|
|
| >PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0014 Score=58.79 Aligned_cols=108 Identities=17% Similarity=0.162 Sum_probs=88.5
Q ss_pred CCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHH
Q 020421 30 GTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYK 109 (326)
Q Consensus 30 ~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~ 109 (326)
-..+.+..+.+=..++-|+|.+.=|..-.+-||+++.+.+++...+..-......-..+. + ++.+|.+|++++
T Consensus 50 vP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~Sv-R------~~G~Si~~i~~~ 122 (376)
T PF02554_consen 50 VPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASV-R------HKGKSIGEIAGK 122 (376)
T ss_pred CCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhh-c------CCCccHHHHHHH
Confidence 446778888999999999999999988899999998888888777766655555443332 1 577799999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Q 020421 110 CMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFS 144 (326)
Q Consensus 110 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 144 (326)
..||+++.+..+..++.+.....++....++.+..
T Consensus 123 ~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 123 YLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998888888877777655
|
This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane |
| >PRK09395 actP acetate permease; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.011 Score=57.33 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=97.2
Q ss_pred CCCCCCHHHHHHHHHHhhhhhh-cchhHHHHHhhcHhhHHHHHHHHHHHHH-HHHHHHHHHHHHhccccCCCCCcCcchh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTG-VLGLPFAFRVAGWLAGCLGVMIAGLSTY-YCMLLLIQCRDKLVSEDTSSTETKTYGD 105 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~~i~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~y~~ 105 (326)
..|+.+++...+.+..+.++++ .++.|...+..|+.. .... +...+.. ....++.+ +.++ .+..|+.|
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~-~~~~~g~~~~~~~~~~---~~r~-----~g~~T~~d 136 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYS-IGFLVGWPIILFLIAE---RLRN-----LGKYTFAD 136 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHH-HHHHHHHHHHHHHHHH---HHhh-----CCCccHHH
Confidence 4567888888888888888877 457998888888743 2111 1111111 11222222 2221 46789999
Q ss_pred hHHHhhhh-hhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHH
Q 020421 106 LGYKCMGK-AGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFA 184 (326)
Q Consensus 106 l~~~~~G~-~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 184 (326)
+-++-||+ ..+.+..+...+..+......+...+..++.+.+ .+...-.++..++++.....-.++...+...+-
T Consensus 137 ~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g----i~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ 212 (551)
T PRK09395 137 VASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG----LNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIK 212 (551)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 99998984 5777777766666666666666666666666654 455555556666666677778888888888877
Q ss_pred HHHHHHHHHHH
Q 020421 185 DICNVLAMTLV 195 (326)
Q Consensus 185 ~~~~~~~~~~i 195 (326)
.+.++...+++
T Consensus 213 ~iim~~g~ii~ 223 (551)
T PRK09395 213 AVLLLSGATFM 223 (551)
T ss_pred HHHHHHHHHHH
Confidence 66555544333
|
|
| >COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.027 Score=52.70 Aligned_cols=205 Identities=12% Similarity=0.006 Sum_probs=110.8
Q ss_pred CCcCcchhhHHHhhhhhhHHHHHHHH---HHHHhhhHHHHHHHHHHhHHHHhhhccCC----c-------hhHHHHHHHH
Q 020421 98 TETKTYGDLGYKCMGKAGRFLTEFLI---FTSQCGGSVAYLVFIGQNLFSIFKSYTSL----T-------YRSFIFLVVP 163 (326)
Q Consensus 98 ~~~~~y~~l~~~~~G~~~~~~~~~~~---~~~~~g~~~~y~i~~~~~l~~l~~~~~~~----~-------~~~~~~i~~~ 163 (326)
+...+|+.++|.-||-+|..+-.+.- ...-+|.- .-..+..+..++....+. + ....-+++..
T Consensus 100 ~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvq---ty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ 176 (497)
T COG1953 100 KYGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQ---TYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFF 176 (497)
T ss_pred ccCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHH
Confidence 35679999999999887655443322 22223222 222333333333332110 1 1122224444
Q ss_pred HHHH---HhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcccc----cccccccchhhHHHHHHHhh--
Q 020421 164 VQIL---LSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRK----AVSSNIRGLPFAGGMAVFCF-- 234 (326)
Q Consensus 164 ~~~p---l~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~faf-- 234 (326)
++.. +...+.+++++++...+...+.+..+.+++....+-.. .....+.+ ..+ +....+...-....++
T Consensus 177 ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g-~~~~~~~p~~~~~~~-~~~w~~~~~~~~~v~~~A 254 (497)
T COG1953 177 IFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGG-SSILGELPAGTVSGS-NSSWAFLAGIAAWVGFWA 254 (497)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCC-cCccccCCCCCCCcc-hhHHHHHHHHHHHHHHHH
Confidence 4433 45667899999999988888877777776666665311 11122222 111 1222222222222333
Q ss_pred ccccchhchHhhhhcccchHHHHHHHHHHHH----HHHHHHHhHhhhhcCCCc--hhhHhhcCCCChHHH-HHHHHHHHH
Q 020421 235 EGFGMTFALESSMRERGRFSKLLAQAFTGIT----LVYVMFGFFGFMAYGDDT--KDIVTLNLPKDWSSI-AVQVISYVS 307 (326)
Q Consensus 235 ~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~----~~y~~~~~~gy~~fG~~~--~~~il~n~~~~~~~~-~~~~~~~i~ 307 (326)
...-|.|...|.-|+|+.-.+.-.+++.+.+ ++=...+..++..||+.. +.+++.++++..... +..+.+++.
T Consensus 255 tl~lN~~DFsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~ia 334 (497)
T COG1953 255 TLALNIPDFTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVA 334 (497)
T ss_pred HHhcCCchhhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHH
Confidence 2446778888888887664443344444444 444444557788999885 468999998765554 445555544
|
|
| >TIGR00796 livcs branched-chain amino acid uptake carrier | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.011 Score=54.36 Aligned_cols=216 Identities=13% Similarity=0.188 Sum_probs=110.8
Q ss_pred HHHHhhhhhhcchhHHHHH-hhc--HhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHhhhhhhH
Q 020421 40 NIIVSIVGTGVLGLPFAFR-VAG--WLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGR 116 (326)
Q Consensus 40 ~l~~~~iG~GiL~LP~~~~-~~G--~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~ 116 (326)
.++.-.+|+|.|..|-... ++| |..+.+.+++.++..-....+ ..+ ....+|.++.++ +||+..
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~------~~gG~~~~l~~~-~g~~f~ 69 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALA------LVGGGYDSLSAR-IGKVFG 69 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eee------ecCCCHHHHHHH-hChHHH
Confidence 4667789999999986544 443 566677777777666655543 221 112367776655 667766
Q ss_pred HHHHHHHHHHHhhh-------HHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhh---hhcCCchhhHHHHHHH
Q 020421 117 FLTEFLIFTSQCGG-------SVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSW---INSLSALAPFSIFADI 186 (326)
Q Consensus 117 ~~~~~~~~~~~~g~-------~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~---~~~l~~l~~~s~~~~~ 186 (326)
.+..+.+.+..-.. ..+|... +.+++++. +......+..++.+.+.+ .|.-+-..+++.+-+.
T Consensus 70 ~lf~~~~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~---~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP 142 (378)
T TIGR00796 70 ILFTVILYLTIGPLFAIPRTATVSFEMG----IAPLLHSP---TSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTP 142 (378)
T ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHH----HHhccCcc---cchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHH
Confidence 66665555433221 2233322 33444421 122222344444444433 3333344455555555
Q ss_pred HHHHHHHHHHHhhhhhhhcCCCCCcccccccccccchhhHHHHHHHhhc-------cccchhchHh-hhhcccc-hHHHH
Q 020421 187 CNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFE-------GFGMTFALES-SMRERGR-FSKLL 257 (326)
Q Consensus 187 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-------~~~~i~~i~~-~m~~p~~-~~~~~ 257 (326)
..++.+.+++..++.++..+ ...+. ..+.. -..+.+.+----+.++ +...+-.+.+ ++|||+| .++..
T Consensus 143 ~lLi~l~~lii~g~~~p~g~-~~~~~-~~~~~-~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i 219 (378)
T TIGR00796 143 ALLVTLLALIIKALLWPAGP-ILAAS-GAYAS-QQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTI 219 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCC-cCCcc-ccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56666666666666653221 11111 11100 0123333333333444 6677777777 8999866 55555
Q ss_pred HHHH---HHHHHHHHHHHhHhhhh
Q 020421 258 AQAF---TGITLVYVMFGFFGFMA 278 (326)
Q Consensus 258 ~~~~---~~~~~~y~~~~~~gy~~ 278 (326)
..+. .....+|...+..|...
T Consensus 220 ~~G~ia~i~l~~vY~~L~~lGa~~ 243 (378)
T TIGR00796 220 KAGLIAAVLLAFIYLSLFYLGATS 243 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCc
Confidence 5444 44466666666666544
|
transmembrane helical spanners. |
| >COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.014 Score=55.84 Aligned_cols=153 Identities=18% Similarity=0.089 Sum_probs=104.0
Q ss_pred CCCCCCHHHHHHHHHHhhhh-hhcchhHHHHHhhcHhhHHHHHHH---HHHHHHHHHHHHHHHHHHhccccCCCCCcCcc
Q 020421 28 VTGTASAAQTLGNIIVSIVG-TGVLGLPFAFRVAGWLAGCLGVMI---AGLSTYYCMLLLIQCRDKLVSEDTSSTETKTY 103 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG-~GiL~LP~~~~~~G~~~g~i~~i~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y 103 (326)
..|+.+.+-......-+.++ .-.+.+|...++.|+...+..... ..+...+-...+.+..++ ++..|.
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~--------~~~~T~ 107 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA--------RGATTI 107 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCCccH
Confidence 34556666666666666666 667889999999888765544442 222222333333222211 688899
Q ss_pred hhhHHHhhh-hhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHH
Q 020421 104 GDLGYKCMG-KAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSI 182 (326)
Q Consensus 104 ~~l~~~~~G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 182 (326)
.|+-++-|| |+.+.+..+...+..+..+...+...+..++..+. .++..-.++...++......-.++...+...
T Consensus 108 ~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g----i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~ 183 (493)
T COG0591 108 PDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG----ISYVTGILIGALIVALYTFLGGLRAVVWTDF 183 (493)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----CCHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 999999999 88999999999999999999999999998866665 2444444455555555666777888777776
Q ss_pred HHHHHHHHHH
Q 020421 183 FADICNVLAM 192 (326)
Q Consensus 183 ~~~~~~~~~~ 192 (326)
+-...+...+
T Consensus 184 iqg~im~i~~ 193 (493)
T COG0591 184 IQGLIMLIAL 193 (493)
T ss_pred HHHHHHHHHH
Confidence 6555444433
|
|
| >TIGR02711 symport_actP cation/acetate symporter ActP | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.025 Score=54.93 Aligned_cols=152 Identities=15% Similarity=0.153 Sum_probs=95.6
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-cchhHHHHHhhcHhhHHHHHHHHHHHHH-HHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 29 TGTASAAQTLGNIIVSIVGTG-VLGLPFAFRVAGWLAGCLGVMIAGLSTY-YCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 29 ~~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~~i~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
.++.+++.....+..+.+++. .+..|...+..|+-. .... +...+.+ ....++.+-.++ .+..|..|.
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~-~~~~-~g~~~~~~i~~~~~a~~lrr--------~g~~T~~d~ 135 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDG-LIYS-LGFLVGWPIILFLIAERLRN--------LGRYTFADV 135 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-HHHH-HHHHHHHHHHHHHHHHHHHH--------cCCccHHHH
Confidence 566788887778888877755 568998888888643 2211 1111222 222233333333 356899999
Q ss_pred HHHhhh-hhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHH
Q 020421 107 GYKCMG-KAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFAD 185 (326)
Q Consensus 107 ~~~~~G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 185 (326)
-++-|| |..+.+..+...+..+......+...+..++.+++ .+...-.++..+++........++...+...+-.
T Consensus 136 l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g----i~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~ 211 (549)
T TIGR02711 136 ASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG----LNYHVAVVLVGILMVMYVLFGGMLATTWVQIIKA 211 (549)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 888887 44677766666666666666667777777766654 3544444456666666677788888888888876
Q ss_pred HHHHHHHHH
Q 020421 186 ICNVLAMTL 194 (326)
Q Consensus 186 ~~~~~~~~~ 194 (326)
+.++...++
T Consensus 212 ~im~~g~i~ 220 (549)
T TIGR02711 212 VLLLFGATF 220 (549)
T ss_pred HHHHHHHHH
Confidence 665554443
|
Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits. |
| >KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00047 Score=64.86 Aligned_cols=233 Identities=12% Similarity=0.036 Sum_probs=136.2
Q ss_pred CCCCCCHHHHHHHHH-Hhhhhhh-cchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchh
Q 020421 28 VTGTASAAQTLGNII-VSIVGTG-VLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGD 105 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~-~~~iG~G-iL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~ 105 (326)
++-+-+|+.+++.-. -.+.|.= .|-+++...|+|...+++++.++..++..|..-..-...+- +- .....|.-
T Consensus 26 ~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~--~v---k~Gg~yfl 100 (643)
T KOG2083|consen 26 GPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRG--QV---KSGGVYFL 100 (643)
T ss_pred CceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecc--ee---ccCcEEEE
Confidence 344456666664322 2333333 23589999999999999999888888877774332222221 11 12334433
Q ss_pred hHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHH-----HHHHHHHHHhhhhcCCchhhH
Q 020421 106 LGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIF-----LVVPVQILLSWINSLSALAPF 180 (326)
Q Consensus 106 l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~-----i~~~~~~pl~~~~~l~~l~~~ 180 (326)
++ +-.|+-.+--+.+...+.+.-.+..|++.++|.+.+++... ..+++ +..++...++ .-..+--++.
T Consensus 101 is-~slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~-----s~~~i~gi~~vt~~ill~i~-~ag~~w~~k~ 173 (643)
T KOG2083|consen 101 IS-RSLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETE-----SKEMIDGIGSVTVLILLAIN-VAGVEWEAKL 173 (643)
T ss_pred EE-ecccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhc-----cHHHhcchhHHHHHHHHHhh-hccchhHHHH
Confidence 33 44667666677777888888899999999999999999863 23332 2222222222 2233334444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhc---C---CCC-Cccccccccccc---chhhHHHHHHHhhccccchhchHhhhhcc
Q 020421 181 SIFADICNVLAMTLVVKEDVQKILG---G---EFS-FSDRKAVSSNIR---GLPFAGGMAVFCFEGFGMTFALESSMRER 250 (326)
Q Consensus 181 s~~~~~~~~~~~~~i~~~~~~~~~~---~---~~~-~~~~~~~~~~~~---~~~~~~~~~~faf~~~~~i~~i~~~m~~p 250 (326)
+.+-.+...+.+.--+..++..... + ... ....+.++ ++. .++..|++++=+..|.-.=..+.++.|+|
T Consensus 174 q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~-~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~P 252 (643)
T KOG2083|consen 174 QIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNP-DIDPGYTFFSVFAVFFPAATGILAGANISGDLKDP 252 (643)
T ss_pred HHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCC-CcCCCCceEeeeeeecchhhhhhccccccCCCCCc
Confidence 4433333222222222232222110 0 000 00111111 233 67777788877887777778889999999
Q ss_pred cc-hHHHHHHHHHHHHHHHHHHHh
Q 020421 251 GR-FSKLLAQAFTGITLVYVMFGF 273 (326)
Q Consensus 251 ~~-~~~~~~~~~~~~~~~y~~~~~ 273 (326)
++ .|+....+..+.+.+|+.+..
T Consensus 253 q~~IP~GaL~Ai~vst~~yl~~i~ 276 (643)
T KOG2083|consen 253 QKAIPLGALLAIGVSTLLYLIFIA 276 (643)
T ss_pred hhhcccchhhhhhhhhhhhhhhhh
Confidence 66 899999999999999965543
|
|
| >PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0032 Score=59.32 Aligned_cols=238 Identities=13% Similarity=0.001 Sum_probs=119.5
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcchhHHHHH--hhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 29 TGTASAAQTLGNIIVSIVGTGVLGLPFAFR--VAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 29 ~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~--~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
+|+.++++-+..-.+..+....+.+..... ..++.-+++.+++..++...-.........+ ...++..+
T Consensus 6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r---------~Gl~~~v~ 76 (440)
T PF02133_consen 6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPR---------TGLPTMVL 76 (440)
T ss_dssp G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHC---------C---HHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccc---------cCCCchhc
Confidence 444567776666666666655555444432 2345555666665555554444443333333 44577888
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCC--c------hhHH-HHHHHHHH---HHHhhhhcC
Q 020421 107 GYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSL--T------YRSF-IFLVVPVQ---ILLSWINSL 174 (326)
Q Consensus 107 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~--~------~~~~-~~i~~~~~---~pl~~~~~l 174 (326)
+|..||.+|..+..+...+...|-........++.+..+.+...+. . ...+ .+++.++. .-.......
T Consensus 77 sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~ 156 (440)
T PF02133_consen 77 SRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYGM 156 (440)
T ss_dssp TTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCTHH
T ss_pred chhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999999999999999999999999999988865220 0 0001 11111111 111223345
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCcccccccccccchhhHHHHHHHhhc-cccchhchHhhhhcccch
Q 020421 175 SALAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFE-GFGMTFALESSMRERGRF 253 (326)
Q Consensus 175 ~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~p~~~ 253 (326)
+.++++............+........+. +..+..+.+..+.....+..++...+-.+. ...+.+.+.|.+|++++-
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~~ 234 (440)
T PF02133_consen 157 KALRRLAVIAAPILLVVFIGMLIWALSKA--GGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSDTSA 234 (440)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHC--T-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--HHHH
T ss_pred HHHHhHHhhhhHHHHhhhhheeEEEeecC--CcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCCCCc
Confidence 55555555554443333333333332221 110111111111101123333333332222 224456888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhh
Q 020421 254 SKLLAQAFTGITLVYVMFGFFGFM 277 (326)
Q Consensus 254 ~~~~~~~~~~~~~~y~~~~~~gy~ 277 (326)
.+...++..........+++++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~g~lg~~ 258 (440)
T PF02133_consen 235 WWGFWLGFPGGFIPFVLVGILGAA 258 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeehhhhHHHHHHHHHHHHHH
Confidence 777777777777777776665544
|
Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A. |
| >PRK15419 proline:sodium symporter PutP; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.099 Score=50.21 Aligned_cols=158 Identities=16% Similarity=0.081 Sum_probs=94.4
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcc-hhHHHHHhhcHhhHHHHHHHHHHHH-HHHHHHHHHHHHHhccccCCCCCcCcchh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVL-GLPFAFRVAGWLAGCLGVMIAGLST-YYCMLLLIQCRDKLVSEDTSSTETKTYGD 105 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL-~LP~~~~~~G~~~g~i~~i~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~y~~ 105 (326)
..|+.+++...+.+..+.+++..+ +.|...++.|+..-+.. +...+. ......+..-.. .+.++ ..+..|..|
T Consensus 38 agr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~--~~~~~~~~l~~~~~~~~l~-~~~~~--~~~~~T~~e 112 (502)
T PRK15419 38 GGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIA--IGLTLGAWINWKLVAGRLR-VHTEY--NNNALTLPD 112 (502)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHH--hcCceeHHH
Confidence 457789999999888888888855 68988888887542211 111111 111111111111 01000 046778999
Q ss_pred hHHHhhhhh---hHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHH
Q 020421 106 LGYKCMGKA---GRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSI 182 (326)
Q Consensus 106 l~~~~~G~~---~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 182 (326)
.-++-||++ .+.+..+...+.....+..-+...+..++.+++ .+.....++..++++.....-.++...+...
T Consensus 113 ~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g----i~~~~~iii~~~iv~iYt~~GGl~aV~~TD~ 188 (502)
T PRK15419 113 YFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG----MSYETALWAGAAATILYTFIGGFLAVSWTDT 188 (502)
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999864 344444544555555555555556666666654 4554445566666666778888999888888
Q ss_pred HHHHHHHHHHHH
Q 020421 183 FADICNVLAMTL 194 (326)
Q Consensus 183 ~~~~~~~~~~~~ 194 (326)
+-.+.++...++
T Consensus 189 iQ~~imi~g~i~ 200 (502)
T PRK15419 189 VQASLMIFALIL 200 (502)
T ss_pred HHHHHHHHHHHH
Confidence 877665554433
|
|
| >TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.08 Score=51.51 Aligned_cols=152 Identities=8% Similarity=-0.005 Sum_probs=97.8
Q ss_pred CCCCCCHHHHHHHHHHhhhhhh-cchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTG-VLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
..|+.+++.....+..+.++++ .++.|...+..|+..-...+ -..........++.+-.++ .+..|..|.
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~p~~rr--------~~~~T~~e~ 100 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLM-GWTGGYVLLALLLAPYLRK--------FGKYTVPDF 100 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHH--------CCCccHHHH
Confidence 4677899998888988888776 55788877777763311111 1111111223344444444 467789999
Q ss_pred HHHhhhhh-hHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHH
Q 020421 107 GYKCMGKA-GRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFAD 185 (326)
Q Consensus 107 ~~~~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 185 (326)
-++-||++ .+.+..+...+..+......+...+..++.+.+ .+...-.++..+++......-.++...+...+-.
T Consensus 101 l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g----i~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~ 176 (552)
T TIGR03648 101 IGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE----VDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQY 176 (552)
T ss_pred HHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 88889855 577776666666666666667777777776664 3554445555566666677788888888888776
Q ss_pred HHHHHHH
Q 020421 186 ICNVLAM 192 (326)
Q Consensus 186 ~~~~~~~ 192 (326)
+.+++..
T Consensus 177 iim~ig~ 183 (552)
T TIGR03648 177 IVLIVAY 183 (552)
T ss_pred HHHHHHH
Confidence 5555443
|
This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused. |
| >TIGR02121 Na_Pro_sym sodium/proline symporter | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.14 Score=48.94 Aligned_cols=159 Identities=15% Similarity=0.117 Sum_probs=93.2
Q ss_pred CCCCCCHHHHHHHHHHhhhhhh-cchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCCCCcCcchh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTG-VLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVS-EDTSSTETKTYGD 105 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~y~~ 105 (326)
..|+.+++...+.+..+.+++. .+..|......|+...+. .+-..+........+.+-.++..+ + .+..|..|
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~-~~g~~~~~~~~~~~~~~~~r~~~~~~----~~~~T~~e 108 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWI-AIGLTIGAYINWKFVAPRLRVYTEAA----HNSITLPD 108 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHhh----cCCccHHH
Confidence 3566888888888888888766 456888777888754222 111111122223333332222211 1 57788999
Q ss_pred hHHHhhhhh---hHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHH
Q 020421 106 LGYKCMGKA---GRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSI 182 (326)
Q Consensus 106 l~~~~~G~~---~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 182 (326)
+-++-||++ .+.+..+...+.........+...+..++.+++ .+.....++..++.........++...+...
T Consensus 109 ~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g----i~~~~~iii~~~i~~~Yt~~GGl~av~~TD~ 184 (487)
T TIGR02121 109 FFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG----LDYKTGLLIGALIIVIYTFFGGFLAVSWTDF 184 (487)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 999999964 333444444444444445555566666666554 3544444555566666677778888888887
Q ss_pred HHHHHHHHHHHHH
Q 020421 183 FADICNVLAMTLV 195 (326)
Q Consensus 183 ~~~~~~~~~~~~i 195 (326)
+-.+.++...+++
T Consensus 185 iQ~~i~~~~~~~v 197 (487)
T TIGR02121 185 VQGLLMFFALVLV 197 (487)
T ss_pred HHHHHHHHHHHHH
Confidence 7766655544433
|
This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. |
| >PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.074 Score=49.27 Aligned_cols=155 Identities=17% Similarity=0.158 Sum_probs=84.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHhhhhhh-cchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCc
Q 020421 24 SSGRVTGTASAAQTLGNIIVSIVGTG-VLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKT 102 (326)
Q Consensus 24 ~~~~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 102 (326)
++++++++.|.+|+++..+.+.+|+| |....-+....|. .++..+-+.+++..-+-..=.....+++.++++++-...
T Consensus 11 ~~~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GG 89 (416)
T PF01235_consen 11 KKKEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGG 89 (416)
T ss_pred CCCCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeec
Confidence 34446778999999999999999999 5568888866665 447777777777666655444455555544332211111
Q ss_pred chhhHHHhhhhh-hHHHHHHHHHHHHhhh--HHHHHHHHHHhHHHHhhhccCCchhHHHH-HHHHHHHHHhhhhcCCchh
Q 020421 103 YGDLGYKCMGKA-GRFLTEFLIFTSQCGG--SVAYLVFIGQNLFSIFKSYTSLTYRSFIF-LVVPVQILLSWINSLSALA 178 (326)
Q Consensus 103 y~~l~~~~~G~~-~~~~~~~~~~~~~~g~--~~~y~i~~~~~l~~l~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~ 178 (326)
-.-..++.+|++ ...+..++. +..++. .......+++.+++-+ +.+ .|.. +.+.++..+.....++++.
T Consensus 90 P~yyi~~gl~~k~la~~fai~~-~~~~~~~~~~~Q~nsi~~~~~~~f----~i~--~~~~gi~l~~l~~~vi~GGikrI~ 162 (416)
T PF01235_consen 90 PMYYIEKGLGSKWLAILFAIFL-IIAFGIGFNMVQANSIADALSSAF----GIP--PWITGIILAILVALVIFGGIKRIA 162 (416)
T ss_pred HHHHHHHHhccchHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHhhc----ccc--HHHHHHHHHHHHHHHHHcchhHHH
Confidence 112245555554 344444442 222222 2333333333333322 222 2332 4444444456667777777
Q ss_pred hHHHHHHH
Q 020421 179 PFSIFADI 186 (326)
Q Consensus 179 ~~s~~~~~ 186 (326)
.++..-+-
T Consensus 163 ~v~~~lVP 170 (416)
T PF01235_consen 163 KVSEKLVP 170 (416)
T ss_pred HHHHHHHH
Confidence 66655443
|
One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane |
| >COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.16 Score=46.89 Aligned_cols=154 Identities=18% Similarity=0.101 Sum_probs=86.3
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhh-cchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchh
Q 020421 27 RVTGTASAAQTLGNIIVSIVGTG-VLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGD 105 (326)
Q Consensus 27 ~~~~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~ 105 (326)
++++..|.+|+.+....+.+|+| |-..+-+.+..|.. ++..+=+++++..-+...=....++++.+++++.-+..=.-
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPG-AvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPG-AVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCc-cHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 46778999999999999999999 55688888776653 36666666666655554444445555544332110000011
Q ss_pred hHHHhhhh-hhHHHHHHHHHHHHh-hhHHHHHHHHHHhHHHHhhhccCCchhHHHH-HHHHHHHHHhhhhcCCchhhHHH
Q 020421 106 LGYKCMGK-AGRFLTEFLIFTSQC-GGSVAYLVFIGQNLFSIFKSYTSLTYRSFIF-LVVPVQILLSWINSLSALAPFSI 182 (326)
Q Consensus 106 l~~~~~G~-~~~~~~~~~~~~~~~-g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~ 182 (326)
.-++-+|. |...+..+.+.+... .........+++.++.-++- + .+.. +.+.++..+.....+++..+++.
T Consensus 137 Yi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~~----~--~~~~gi~la~l~~~VI~GGi~rIa~v~~ 210 (452)
T COG1115 137 YIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFGI----P--PLVTGIVLALLVALVIFGGIKRIAKVSS 210 (452)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCC----c--HHHHHHHHHHHHHHHHHcchHHHHHHHH
Confidence 13444443 334444333333222 25555555666666655442 2 3333 44444455566777777777776
Q ss_pred HHHHH
Q 020421 183 FADIC 187 (326)
Q Consensus 183 ~~~~~ 187 (326)
..+.+
T Consensus 211 ~vVPf 215 (452)
T COG1115 211 KVVPF 215 (452)
T ss_pred HHHHH
Confidence 55443
|
|
| >PRK15015 carbon starvation protein A; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.025 Score=54.52 Aligned_cols=106 Identities=14% Similarity=0.160 Sum_probs=81.7
Q ss_pred CCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHh
Q 020421 31 TASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKC 110 (326)
Q Consensus 31 ~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~ 110 (326)
..+.+--+-|=+.++-|+|.+.=|..-.+.||.++.+.+++...+..-...+..-..+. + ++.+|.+|++++.
T Consensus 82 Pt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~-R------~~GrSig~ia~~~ 154 (701)
T PRK15015 82 PTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVST-R------RDGRSLGELVKEE 154 (701)
T ss_pred cCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeee-c------CCCccHHHHHHHH
Confidence 35556677788999999999999998889999998888887776655444443322221 1 5677999999999
Q ss_pred hhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHH
Q 020421 111 MGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLF 143 (326)
Q Consensus 111 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~ 143 (326)
.|+.++.+..+..++.+.....++...+.+.+.
T Consensus 155 iG~~~~~lfli~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 155 MGPTAGVIALVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888888887777777776666664
|
|
| >COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.11 Score=49.13 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=81.2
Q ss_pred CCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHH
Q 020421 30 GTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYK 109 (326)
Q Consensus 30 ~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~ 109 (326)
-..+.+..+-+=+-++-|+|.+.=|..-++.||.++.+.+++...+..=-...++-..+. | ++..|.+|++++
T Consensus 50 VPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~Sv---R----~~G~Si~~ia~~ 122 (575)
T COG1966 50 VPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSV---R----HGGKSIGEIAGK 122 (575)
T ss_pred ccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeee---c----cCCccHHHHHHH
Confidence 346778888899999999999999999999999998888887776665544444332222 1 567799999999
Q ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Q 020421 110 CMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFS 144 (326)
Q Consensus 110 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 144 (326)
..|+..+.+..+...+........+.......+.+
T Consensus 123 ~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~l~~ 157 (575)
T COG1966 123 YLGRTAKVFFLLLALILLILVGAVFAAVIAKLLAN 157 (575)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999988877776666655555555544443
|
|
| >COG4147 DhlC Predicted symporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.27 Score=45.73 Aligned_cols=201 Identities=11% Similarity=0.037 Sum_probs=127.0
Q ss_pred hHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHH-hhhhhhHHHHHHHHHHHHhhhH
Q 020421 53 LPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYK-CMGKAGRFLTEFLIFTSQCGGS 131 (326)
Q Consensus 53 LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~-~~G~~~~~~~~~~~~~~~~g~~ 131 (326)
-+...+..||..|..++.+. +.+-.++ -+.+|+.|.... ..-++.|.+..+.-.+..+...
T Consensus 74 YdG~~Y~iG~~~Gy~i~~fL----------~A~~LRk--------~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~Yl 135 (529)
T COG4147 74 YDGLIYSIGWTGGYPILLFL----------IAEYLRK--------LGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYL 135 (529)
T ss_pred cchHHHHHHHHHHHHHHHHH----------HHHHHHh--------cCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence 34556666666665554332 2233333 367788888554 4445677777777666667677
Q ss_pred HHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhcC-----
Q 020421 132 VAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILGG----- 206 (326)
Q Consensus 132 ~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~----- 206 (326)
+..++-.+..+..+++ .+...-.++..+++........++...|.+.+-.+..+....+....-..+...+
T Consensus 136 iaQmvGaG~li~~l~g----v~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~ 211 (529)
T COG4147 136 IAQMVGAGLLISLLLG----VPYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLF 211 (529)
T ss_pred HHHHHhhHHHHHHHhC----CCceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHH
Confidence 7777777777777766 3555555566777777788889999999999887766665554443333322110
Q ss_pred -----CCCC-----cccccccccccchhhHHHHHHHhhccccchhchHhhhh---cccchHHHHHHHHHHHHHHHHHHHh
Q 020421 207 -----EFSF-----SDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMR---ERGRFSKLLAQAFTGITLVYVMFGF 273 (326)
Q Consensus 207 -----~~~~-----~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~---~p~~~~~~~~~~~~~~~~~y~~~~~ 273 (326)
.++. +..|.. ..++-...++...--..|..-+|++.-..- +-|+-++.+.++..++..+|+..-+
T Consensus 212 ~~~~~~~~~~~~~~~~~pGl--~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ 289 (529)
T COG4147 212 AEAVTVHPKDDGSDIMEPGL--LYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPI 289 (529)
T ss_pred HHHhhcCcccCcccccCCCC--cccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111111 234555566555555567777888765543 2366889999999999999999888
Q ss_pred Hhhh
Q 020421 274 FGFM 277 (326)
Q Consensus 274 ~gy~ 277 (326)
.|+.
T Consensus 290 ig~~ 293 (529)
T COG4147 290 IGAG 293 (529)
T ss_pred HHHH
Confidence 8775
|
|
| >PRK10484 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.97 Score=43.69 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=86.6
Q ss_pred CCCCCCHHHHHHHHHHhhhhhh-cchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTG-VLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
..|+.+++-..+.+..+.++++ .++.|...++.|+..... ..............+..-..+ .+..|..|+
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~-~~~~~~~~~~~~~~~~p~~~r--------~~~~T~~e~ 106 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAW-EVTAAIALIILALIFLPRYLK--------SGITTIPDF 106 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHH-HHHHHHHHHHHHHHHHHHHHh--------cCCccHHHH
Confidence 4567888888888888888777 447898887888643211 111111111222222222222 467799999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhh-HHHHHHHHHHhHHHHhh--hccCCchhHHHH----HHHHHHHHHhhhhcCCchhh
Q 020421 107 GYKCMGKAGRFLTEFLIFTSQCGG-SVAYLVFIGQNLFSIFK--SYTSLTYRSFIF----LVVPVQILLSWINSLSALAP 179 (326)
Q Consensus 107 ~~~~~G~~~~~~~~~~~~~~~~g~-~~~y~i~~~~~l~~l~~--~~~~~~~~~~~~----i~~~~~~pl~~~~~l~~l~~ 179 (326)
-++-||++.+.+......+..... +...+...+..++.++. ...+.+...-.+ +..++.......-.++...+
T Consensus 107 l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~ 186 (523)
T PRK10484 107 LEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAVAV 186 (523)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 999999987776665544433222 22222233333444321 112233332222 22334455566778888888
Q ss_pred HHHHHHHHHHHHHHH
Q 020421 180 FSIFADICNVLAMTL 194 (326)
Q Consensus 180 ~s~~~~~~~~~~~~~ 194 (326)
...+-.+.+++..++
T Consensus 187 TD~iQ~vim~i~~ii 201 (523)
T PRK10484 187 SDTINGIGLLIGGLL 201 (523)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888876665554433
|
|
| >COG0733 Na+-dependent transporters of the SNF family [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.26 Score=45.71 Aligned_cols=226 Identities=16% Similarity=0.040 Sum_probs=118.1
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-cchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhH
Q 020421 29 TGTASAAQTLGNIIVSIVGTG-VLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLG 107 (326)
Q Consensus 29 ~~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 107 (326)
+.-.|...-+....++.+|.| +--.||...+.|-..-.+..++.-+...+...+. | ..-+|+.+.+...+|.++.
T Consensus 6 e~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~-E---f~iGr~~~~~~~~a~~~l~ 81 (439)
T COG0733 6 EQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLA-E---FAIGRRGRKNAVGAFRKLA 81 (439)
T ss_pred cchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHH-H---HHhhhhcCCChhHHHHHhc
Confidence 334566777888999999999 7789999888877664555444444444443322 2 2212222224555666655
Q ss_pred HHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhc---------------cCCchhHH-HH---HHHHHHHHH
Q 020421 108 YKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSY---------------TSLTYRSF-IF---LVVPVQILL 168 (326)
Q Consensus 108 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~---------------~~~~~~~~-~~---i~~~~~~pl 168 (326)
. +|++ ....+......+..++-|.+..+=.+..+.... .+...+.+ .. ....++...
T Consensus 82 ~---~~~~-~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~ 157 (439)
T COG0733 82 P---KKKW-EWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTAL 157 (439)
T ss_pred c---Cccc-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 4 2322 222233333333344444444433333322221 00111111 11 122222223
Q ss_pred hhhhcCCc-hhhHHHHHHHHHHHHHHHHHHhhhhhhhc--CC--CCCcccccccccccchhhHHHHHHHhh-ccccchhc
Q 020421 169 SWINSLSA-LAPFSIFADICNVLAMTLVVKEDVQKILG--GE--FSFSDRKAVSSNIRGLPFAGGMAVFCF-EGFGMTFA 242 (326)
Q Consensus 169 ~~~~~l~~-l~~~s~~~~~~~~~~~~~i~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~~ 242 (326)
...|.+++ ..+.+.+-....++.+++++++.+..+-. +. .-.|+..... |+..+..++|-..|+- .|...+..
T Consensus 158 iv~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~-~~~v~~~AlGQ~FFsLSlG~g~mit 236 (439)
T COG0733 158 IVSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLT-DPKVWLAALGQAFFSLSLGFGIMIT 236 (439)
T ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcC-chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555 66677777666667777777776663211 00 0112222221 3566788899988887 56677788
Q ss_pred hHhhhhcccchHHHHHHHHHH
Q 020421 243 LESSMRERGRFSKLLAQAFTG 263 (326)
Q Consensus 243 i~~~m~~p~~~~~~~~~~~~~ 263 (326)
..+.++|+++..+........
T Consensus 237 YsSYL~k~~~l~~sa~~v~~~ 257 (439)
T COG0733 237 YSSYLSKKSDLVSSALSIVLL 257 (439)
T ss_pred HHhhcCcccchhhhHHHHHHH
Confidence 888898888877654433333
|
|
| >TIGR00796 livcs branched-chain amino acid uptake carrier | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.13 Score=47.20 Aligned_cols=80 Identities=14% Similarity=0.306 Sum_probs=61.3
Q ss_pred CcCcchhhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchh
Q 020421 99 ETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALA 178 (326)
Q Consensus 99 ~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 178 (326)
+..-..+++++.+|+.|+.+..+.+.+.|+.++++....++|.+..+.++ .+++.|.++..+..+.++.. +++++-
T Consensus 253 ~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k---~~y~~~v~~~~l~s~~ia~~-Gl~~Ii 328 (378)
T TIGR00796 253 GAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK---LSYKTWVIVFTLFSFIVANL-GLTQII 328 (378)
T ss_pred cHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHHHh-CHHHHH
Confidence 45566788999999999999999999999999999999999999999775 57777777555544444433 455544
Q ss_pred hHHH
Q 020421 179 PFSI 182 (326)
Q Consensus 179 ~~s~ 182 (326)
.++.
T Consensus 329 ~~~~ 332 (378)
T TIGR00796 329 SISI 332 (378)
T ss_pred HHHH
Confidence 4333
|
transmembrane helical spanners. |
| >PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.075 Score=49.43 Aligned_cols=116 Identities=15% Similarity=0.251 Sum_probs=79.8
Q ss_pred HHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHhhhhhhHHHHHHHHHHHHhhhHHHH
Q 020421 55 FAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAY 134 (326)
Q Consensus 55 ~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y 134 (326)
.....+|.+.+..+.++-+.+.+.....-... +. ..++..-..+++++.+|+.|..+..+.+.+.|.-++++.
T Consensus 222 ~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~----~~---~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL 294 (427)
T PF05525_consen 222 KYTIKAGLIAGILLALIYGGLAYLGATSSGSF----PD---DINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGL 294 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCcccc----cC---CCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666665555554321111 10 013445567779999999999999999999999999999
Q ss_pred HHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHH
Q 020421 135 LVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFS 181 (326)
Q Consensus 135 ~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 181 (326)
...++|++++++++ .+++.|..++.++-+.++.. +++++-.++
T Consensus 295 ~~a~a~yf~~~~~k---isY~~~v~i~~i~S~~ian~-Gl~~Ii~~s 337 (427)
T PF05525_consen 295 ISACAEYFSELFPK---ISYKVWVIIFTIFSFIIANL-GLDQIIKIS 337 (427)
T ss_pred HHHHHHHHHHHhcc---cChHHHHHHHHHHHHHHHHh-CHHHHHHHH
Confidence 99999999999995 58888888666665555543 444433333
|
They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane |
| >PHA02764 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.63 Score=41.15 Aligned_cols=95 Identities=7% Similarity=0.064 Sum_probs=64.0
Q ss_pred CCCCCCHHHHHH-HHHHhhhhhhcchhHHHHHhh--cHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcch
Q 020421 28 VTGTASAAQTLG-NIIVSIVGTGVLGLPFAFRVA--GWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYG 104 (326)
Q Consensus 28 ~~~~~s~~~~~~-~l~~~~iG~GiL~LP~~~~~~--G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~ 104 (326)
--|+.+.+.+++ ++.....|.++ +.|+-+... |.- .+...+++++++.....+..+...++|+. ++.+.|
T Consensus 10 LVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrA----GGdYVY- 82 (399)
T PHA02764 10 IIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLN----GGDYAY- 82 (399)
T ss_pred ceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCC----CceEEE-
Confidence 345677888877 44444444433 556644433 443 36677888888888888888888888653 455555
Q ss_pred hhHHHhhhhhhHHHHHHHHHHHHhhhH
Q 020421 105 DLGYKCMGKAGRFLTEFLIFTSQCGGS 131 (326)
Q Consensus 105 ~l~~~~~G~~~~~~~~~~~~~~~~g~~ 131 (326)
.++++||+.+.+..+..+.......
T Consensus 83 --ISRAFGP~~GFLvG~a~WLtl~~G~ 107 (399)
T PHA02764 83 --IRTAFSSKFYTIFGISLWLTYVLSQ 107 (399)
T ss_pred --hHHhhCccHHHHHHHHHHHHHHhhc
Confidence 7899999988888887776654433
|
|
| >KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.15 Score=49.36 Aligned_cols=217 Identities=13% Similarity=0.070 Sum_probs=113.2
Q ss_pred hhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHhhhhhhHHHHHHHHHHHHhhhH
Q 020421 52 GLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGS 131 (326)
Q Consensus 52 ~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~ 131 (326)
-.++...++|....+..++++-.+..+|..-+ |+-..++.- .+..-|..+.+- +|+-.+--+....++.+...|
T Consensus 89 R~gfIvG~aGll~Tll~lliaY~I~llTvlSi--cAIsTNGaV---~GGGaYymISRs-LGpEfGGSIGllFf~anV~~~ 162 (945)
T KOG1288|consen 89 RFGFIVGQAGLLKTLLMLLIAYAILLLTVLSI--CAISTNGAV---RGGGAYYMISRS-LGPEFGGSIGLLFFVANVFNC 162 (945)
T ss_pred HHhhhhcchHHHHHHHHHHHHHHHHHHHHHHH--hhhccCCce---ecCceEEEEEcc-cCcccCCeeeehhhHHHHhcc
Confidence 46888889999887777777766666666443 333333211 234455554443 444333344445556666677
Q ss_pred HHHHHHHHHhHHHHhhhcc-------C-CchhHHHH----HHHHHHHHHhhhhcCCchhhHHHHHHHHHHHHHHHHHHhh
Q 020421 132 VAYLVFIGQNLFSIFKSYT-------S-LTYRSFIF----LVVPVQILLSWINSLSALAPFSIFADICNVLAMTLVVKED 199 (326)
Q Consensus 132 ~~y~i~~~~~l~~l~~~~~-------~-~~~~~~~~----i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~ 199 (326)
..++..+.|-+-+-+..-. . .+..+|-. +...+.+.+|++. -.-.++.+.+-.+.+......+.+..
T Consensus 163 am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lG-salfAkas~i~f~~is~s~~si~iS~ 241 (945)
T KOG1288|consen 163 AMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLG-SALFAKASNILFVVISVSLFSIPISF 241 (945)
T ss_pred hhhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhh-HHHHHhhhhhhhhHHHHHHhhhhhee
Confidence 7777777776666555210 0 12334433 2222222233331 11122233222222222222222221
Q ss_pred hh-hhhcCC------CC--------------C--------cc--cccccccccchhhHHHHHHHhhccccchhchHhhhh
Q 020421 200 VQ-KILGGE------FS--------------F--------SD--RKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMR 248 (326)
Q Consensus 200 ~~-~~~~~~------~~--------------~--------~~--~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 248 (326)
+. ...++. +. + ++ .+.-+++..++-..|++++-+-.|.-.=-....|+|
T Consensus 242 ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgELk 321 (945)
T KOG1288|consen 242 IFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGELK 321 (945)
T ss_pred EEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCcccc
Confidence 11 110000 00 0 00 000011345677777777666666666677889999
Q ss_pred cccc-hHHHHHHHHHHHHHHHHHHHhHh
Q 020421 249 ERGR-FSKLLAQAFTGITLVYVMFGFFG 275 (326)
Q Consensus 249 ~p~~-~~~~~~~~~~~~~~~y~~~~~~g 275 (326)
+|.| +||-...+.+..+++|..+.++-
T Consensus 322 ~PSkSIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 322 APSKSIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred CccccCCccchHHHHHHHHHHHHHHHHh
Confidence 9966 99999999999999999887643
|
|
| >PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 | Back alignment and domain information |
|---|
Probab=95.46 E-value=2 Score=39.29 Aligned_cols=85 Identities=19% Similarity=0.224 Sum_probs=57.2
Q ss_pred cCcchhhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhh--hhcCCch
Q 020421 100 TKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSW--INSLSAL 177 (326)
Q Consensus 100 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~--~~~l~~l 177 (326)
..+..|..++-+||+..++..+...+.........+...+..++.+++ .+...+.+++.+..+.+.+ .++.+.+
T Consensus 41 g~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g----~~~~~~~~~~~~~~~~ll~~~~~~y~~~ 116 (358)
T PF01566_consen 41 GKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG----IPLWIWVLLVAVIAILLLWLSSGGYRRL 116 (358)
T ss_pred CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCcHHHHHHHHHHHHHHHHHHhccchHH
Confidence 347788888999999999998888888888888888888877776662 3555555544444444444 4555555
Q ss_pred hhHHHHHHHHH
Q 020421 178 APFSIFADICN 188 (326)
Q Consensus 178 ~~~s~~~~~~~ 188 (326)
.++...-...+
T Consensus 117 E~~~~~lv~~m 127 (358)
T PF01566_consen 117 ERILKVLVAVM 127 (358)
T ss_pred HHHHHHHHHHH
Confidence 55554443333
|
The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane |
| >COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.48 Score=43.46 Aligned_cols=117 Identities=15% Similarity=0.211 Sum_probs=82.2
Q ss_pred HHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHhhhhhhHHHHHHHHHHHHhhhHHHHH
Q 020421 56 AFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYL 135 (326)
Q Consensus 56 ~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~ 135 (326)
....+|++.++.+.++-..+.+... ..++...+.+ ++..=..+..++.||+.|..+..+++.+.|.-+++...
T Consensus 225 ~~~~aglIa~i~La~iY~~L~ylGa-----~s~~~~~~~~--nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi 297 (431)
T COG1114 225 YTIKAGLIAAILLALIYLSLFYLGA-----TSASAAGLAA--NGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLI 297 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-----chHhhccccc--chHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777666666666652 1222111111 23444566788999999999999999999999999999
Q ss_pred HHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHH
Q 020421 136 VFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIF 183 (326)
Q Consensus 136 i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 183 (326)
..++|+.+++++. .+++.|..++.++-+.++.. +++++-.+|.-
T Consensus 298 ~a~aefF~~~~p~---~SY~~~v~if~i~sflvan~-GL~~Ii~isvP 341 (431)
T COG1114 298 VACAEFFSKLVPK---LSYKTWVIIFTLISFLVANL-GLEQIIKISVP 341 (431)
T ss_pred HHHHHHHHHhccc---ccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 9999999999996 59999988777766655544 45554444443
|
|
| >PRK00701 manganese transport protein MntH; Reviewed | Back alignment and domain information |
|---|
Probab=95.37 E-value=2.5 Score=39.84 Aligned_cols=48 Identities=6% Similarity=-0.068 Sum_probs=36.8
Q ss_pred cCcchhhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhh
Q 020421 100 TKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFK 147 (326)
Q Consensus 100 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~ 147 (326)
..+..|+.++-+||+..++..+...+...+.....+.-.+-.++.++.
T Consensus 93 G~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~g 140 (439)
T PRK00701 93 GRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFG 140 (439)
T ss_pred CCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 347889999999999888887777777777777777777766665543
|
|
| >PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) | Back alignment and domain information |
|---|
Probab=95.35 E-value=1.5 Score=40.89 Aligned_cols=241 Identities=13% Similarity=0.121 Sum_probs=108.7
Q ss_pred HHHHHHHHHHhhhhhhcchhHHHHHh-h--cHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHh
Q 020421 34 AAQTLGNIIVSIVGTGVLGLPFAFRV-A--GWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKC 110 (326)
Q Consensus 34 ~~~~~~~l~~~~iG~GiL~LP~~~~~-~--G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~ 110 (326)
....-+.++.-..|+|=|..|-...+ + -|+.+.+.+++.+..--.-.. .+... ...++.++++++
T Consensus 5 ~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgv----ia~~~--------~~~~~~~l~~~v 72 (427)
T PF05525_consen 5 ILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGV----IAVAK--------SGGGIEDLASRV 72 (427)
T ss_pred hhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----HHHhh--------cCCCHHHHhccc
Confidence 44455677888899999999876553 3 477777777777665544442 22221 111777777765
Q ss_pred hhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchh---hHHHHHHHH
Q 020421 111 MGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALA---PFSIFADIC 187 (326)
Q Consensus 111 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~---~~s~~~~~~ 187 (326)
--+.+..+. ..+.+ ++|-..+-=+..+-..+.-+....+.+.....++..++.+.+.+.-.++.-+ ++.-+-+-.
T Consensus 73 ~~~f~~if~-~~i~l-~IGP~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~ 150 (427)
T PF05525_consen 73 GPKFALIFT-ILIYL-SIGPLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPI 150 (427)
T ss_pred CcHHHHHHH-HHHHH-HHHhcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence 433333333 22221 1221111112222222221211111122222233333333333333333333 344334444
Q ss_pred HHHHHHHHHHhhhhhhhcCCCCCc-cc--ccccccccc---hhhHHHHHHHhhccccchhchHh-hhhcccchH----HH
Q 020421 188 NVLAMTLVVKEDVQKILGGEFSFS-DR--KAVSSNIRG---LPFAGGMAVFCFEGFGMTFALES-SMRERGRFS----KL 256 (326)
Q Consensus 188 ~~~~~~~i~~~~~~~~~~~~~~~~-~~--~~~~~~~~~---~~~~~~~~~faf~~~~~i~~i~~-~m~~p~~~~----~~ 256 (326)
.+..+.++++.++.++..+..... ++ .++..++.+ ..-+++-.+|+ ...+-.+.+ ..+|+|+.. ++
T Consensus 151 LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg---~iIi~~i~~~g~~~~k~~~~~~~~a 227 (427)
T PF05525_consen 151 LLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFG---IIIINAIRQKGYKDKKEIKKYTIKA 227 (427)
T ss_pred HHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHH---HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 555666666666665432211111 11 112111222 22222222332 222222322 234444433 44
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhcC---CCch-hhHhhcC
Q 020421 257 LAQAFTGITLVYVMFGFFGFMAYG---DDTK-DIVTLNL 291 (326)
Q Consensus 257 ~~~~~~~~~~~y~~~~~~gy~~fG---~~~~-~~il~n~ 291 (326)
-.++.....++|...+..|...-+ ++.+ +.++.+.
T Consensus 228 g~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i 266 (427)
T PF05525_consen 228 GLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQI 266 (427)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHH
Confidence 556666678889998888876554 2333 4555555
|
They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane |
| >PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom | Back alignment and domain information |
|---|
Probab=94.55 E-value=4.5 Score=38.61 Aligned_cols=161 Identities=10% Similarity=0.011 Sum_probs=88.0
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhcchhHHH-----HHh--h--------cHhhHHHHHHHHHHHHHHHHHHHHH---HHH
Q 020421 27 RVTGTASAAQTLGNIIVSIVGTGVLGLPFA-----FRV--A--------GWLAGCLGVMIAGLSTYYCMLLLIQ---CRD 88 (326)
Q Consensus 27 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~-----~~~--~--------G~~~g~i~~i~~~~~~~~~~~~l~~---~~~ 88 (326)
+.+++-|.++-...++.+.+|+|++.-..+ +.+ . ..-.+.....+-+.+..++.+.+.- +..
T Consensus 70 d~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~ 149 (485)
T PF02028_consen 70 DAKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYF 149 (485)
T ss_dssp SS--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhee
Confidence 356778999999999999999999865322 111 0 1122334444444444444443333 333
Q ss_pred HhccccCCCCCcCcchhhHHHhhhh----hhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHH--H--H
Q 020421 89 KLVSEDTSSTETKTYGDLGYKCMGK----AGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFI--F--L 160 (326)
Q Consensus 89 ~~~~~~~~~~~~~~y~~l~~~~~G~----~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~--~--i 160 (326)
.+++ ++..+.++..+-.+|+ +.+.++|+...+...+....-+-.....+..-+++..+.+..... . +
T Consensus 150 ~y~k-----~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii~ 224 (485)
T PF02028_consen 150 FYNK-----GKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIIII 224 (485)
T ss_dssp HHTS--------SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHH
T ss_pred eeec-----CCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3332 2334455555555553 356788888888888878877777777777777776544332222 1 3
Q ss_pred HHHHHHHHhhhhcCCc-hhhHHHHHHHHHHHHH
Q 020421 161 VVPVQILLSWINSLSA-LAPFSIFADICNVLAM 192 (326)
Q Consensus 161 ~~~~~~pl~~~~~l~~-l~~~s~~~~~~~~~~~ 192 (326)
...+++..+....+++ .+++|-+.....+...
T Consensus 225 ~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll 257 (485)
T PF02028_consen 225 VITVIFTISAVSGLDKGIKRLSNINVYLAFALL 257 (485)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333344555566644 5666655544443333
|
The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B. |
| >PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses | Back alignment and domain information |
|---|
Probab=93.56 E-value=4.1 Score=39.44 Aligned_cols=100 Identities=12% Similarity=0.074 Sum_probs=49.7
Q ss_pred HhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhc--CC--CCCcccccccccccchhhHHHHHHHhhc-cccchhc
Q 020421 168 LSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILG--GE--FSFSDRKAVSSNIRGLPFAGGMAVFCFE-GFGMTFA 242 (326)
Q Consensus 168 l~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~i~~ 242 (326)
+...|.+++..++.......-.+.+.++++++....-. +. .-.++..... +..-...|++-.+|+.. |...+..
T Consensus 193 ~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~-~~~vW~~A~~Q~ffsl~ig~G~~it 271 (523)
T PF00209_consen 193 FGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLL-DPKVWIAALGQVFFSLSIGFGIMIT 271 (523)
T ss_dssp TTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTT-SHHHHHHHHHHHHHHTTTTSSHHHH
T ss_pred HheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhh-HHHHHHHHHHHHhhccCCCcceEEE
Confidence 44557777777766655443334444444444432100 00 0011111111 22335678888888884 5677778
Q ss_pred hHhhhhcccchHHHHHHHHHHHHHHH
Q 020421 243 LESSMRERGRFSKLLAQAFTGITLVY 268 (326)
Q Consensus 243 i~~~m~~p~~~~~~~~~~~~~~~~~y 268 (326)
+.+.+|++++..|........-+.+-
T Consensus 272 ~~Sy~~~~~n~~~~a~~v~~~~~~~s 297 (523)
T PF00209_consen 272 YGSYNKFKNNIFRDALIVAFINTLVS 297 (523)
T ss_dssp HHTTS-TTS-SHHHHHHHHHHHHHHH
T ss_pred EcCcCCCCccccccceEEEcCchhhh
Confidence 88888887777665444444443333
|
High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B .... |
| >PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional | Back alignment and domain information |
|---|
Probab=93.35 E-value=1.3 Score=41.41 Aligned_cols=115 Identities=18% Similarity=0.172 Sum_probs=77.9
Q ss_pred HHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHhhhhhhHHHHHHHHHHHHhhhHHHHH
Q 020421 56 AFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYL 135 (326)
Q Consensus 56 ~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~ 135 (326)
....+|.+.+..+.++-+.+.+..... ....+ +. +++..=......+.+|++++.+..+.+++.|+-++++..
T Consensus 227 ~t~~ag~ia~~~L~~vY~gL~~lGa~s----~~~~~-~~--~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi 299 (439)
T PRK15433 227 YTVWAGLMAGVGLTLLYLALFRLGSDS----ASLVD-QS--ANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLT 299 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC----ccccc-CC--CcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777666666666666665521 11111 00 012223345578899999999999999999999999999
Q ss_pred HHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHH
Q 020421 136 VFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSI 182 (326)
Q Consensus 136 i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 182 (326)
..++|.++++++ .+++.|..+..++-++++.. +++++-..+.
T Consensus 300 ~a~a~~f~~~~~----isY~~~v~i~~l~S~~lSn~-G~~~II~~s~ 341 (439)
T PRK15433 300 CACAEFFAQYVP----LSYRTLVFILGGFSMVVSNL-GLSQLIQISV 341 (439)
T ss_pred HHHHHHHHhhcC----CcHHHHHHHHHHHHHHHHHh-HHHHHHHHHH
Confidence 999999999876 47888887777777776655 4444443433
|
|
| >COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.08 E-value=9.3 Score=34.86 Aligned_cols=241 Identities=10% Similarity=0.032 Sum_probs=136.2
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcc-hhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhH
Q 020421 29 TGTASAAQTLGNIIVSIVGTGVL-GLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLG 107 (326)
Q Consensus 29 ~~~~s~~~~~~~l~~~~iG~GiL-~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 107 (326)
+++.+..--.++...+-+++..+ +=|.+-+..|.-+ ..+..+=-...+++.-.+.+=.+...++ .+..+..|+-
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Glgw-vlLa~iqvp~~~l~lgvlgkk~~~~ar~----~nAltI~D~l 112 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGW-VLLAMIQVPTVWLALGVLGKKFAILARE----YNALTINDLL 112 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHH----hCCeeHHHHH
Confidence 45566666667777777776644 5688888877765 3333333344455555554433333322 4666777776
Q ss_pred HHh-hhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHH
Q 020421 108 YKC-MGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADI 186 (326)
Q Consensus 108 ~~~-~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 186 (326)
++- -++...+...+.+.+...+.+.+..+..++.++.... .++..-.+++...+..-......+.....-.+.-.
T Consensus 113 ~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~g----idY~tgL~ifa~~V~iYt~fGGFRAvvltD~IQG~ 188 (473)
T COG4145 113 FARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALG----IDYTTGLLIFAVSVAIYTAFGGFRAVVLTDTIQGL 188 (473)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC----CCchhhHHHHHHHHHHHHhhcceeeeehHHHHHHH
Confidence 655 4667888899999999999999999999999888776 47777666666666666677777776665555444
Q ss_pred HHHHHHHHHHHhhhh------hhhc---CCCCCccccccccc--ccchhhHHHHHHHhhccccchhchH-hhh--hcccc
Q 020421 187 CNVLAMTLVVKEDVQ------KILG---GEFSFSDRKAVSSN--IRGLPFAGGMAVFCFEGFGMTFALE-SSM--RERGR 252 (326)
Q Consensus 187 ~~~~~~~~i~~~~~~------~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~faf~~~~~i~~i~-~~m--~~p~~ 252 (326)
.+++..++....-++ +..+ +.++.--.|+...+ ...+..++.+. -+| ++--.|+.. |.| ||.|.
T Consensus 189 vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwil-v~~-gvlglP~t~vr~ia~kDska 266 (473)
T COG4145 189 VMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWIL-VCF-GVLGLPHTAVRCIAFKDSKA 266 (473)
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHH-HHH-HHhcCcHHHHHHHhccchhH
Confidence 443333332222222 1111 11111111111111 11233333221 122 333334443 333 56666
Q ss_pred hHHHHHHHHHHHHHHHHHH---HhHhhhhcC
Q 020421 253 FSKLLAQAFTGITLVYVMF---GFFGFMAYG 280 (326)
Q Consensus 253 ~~~~~~~~~~~~~~~y~~~---~~~gy~~fG 280 (326)
+.+...++..++.++-+.+ |.+|-+.+-
T Consensus 267 ih~gmiigt~vi~il~~gmhl~G~~graViP 297 (473)
T COG4145 267 IHRGMIIGTIVIAILMLGMHLAGALGRAVIP 297 (473)
T ss_pred HhcCcchHHHHHHHHHHHHHHhhhhhhhhcC
Confidence 7777777777776665554 444555553
|
|
| >KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.49 E-value=3.1 Score=41.24 Aligned_cols=107 Identities=16% Similarity=0.155 Sum_probs=72.8
Q ss_pred HHHHHHHhhhhhhcc-hhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHHhhhhhh
Q 020421 37 TLGNIIVSIVGTGVL-GLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYKCMGKAG 115 (326)
Q Consensus 37 ~~~~l~~~~iG~GiL-~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~ 115 (326)
...-.+-.+.|.=.+ -|-|....+|...+..+.+++.+++..|..-+.-.+..-.- +...+|-.+.+ .+||-.
T Consensus 120 VyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVV-----paGGsYfmISR-sLGPEF 193 (1075)
T KOG2082|consen 120 VYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVV-----PAGGSYFMISR-SLGPEF 193 (1075)
T ss_pred eeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-----cCCCeeEEEec-ccCccc
Confidence 334455666666544 48899999999999999999999999988766544432110 34557766554 466766
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhHHH-Hhhhc
Q 020421 116 RFLTEFLIFTSQCGGSVAYLVFIGQNLFS-IFKSY 149 (326)
Q Consensus 116 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~-l~~~~ 149 (326)
+-.+.++..+..-.....|++..-|.+-. ++|..
T Consensus 194 GgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~a 228 (1075)
T KOG2082|consen 194 GGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAA 228 (1075)
T ss_pred cceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHh
Confidence 66777777777777777788777776655 44443
|
|
| >PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional | Back alignment and domain information |
|---|
Probab=89.81 E-value=18 Score=34.08 Aligned_cols=237 Identities=14% Similarity=0.055 Sum_probs=109.5
Q ss_pred CHHHHHHHHHHhhhhhhcchhHHHHHh-hc--HhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHHH
Q 020421 33 SAAQTLGNIIVSIVGTGVLGLPFAFRV-AG--WLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGYK 109 (326)
Q Consensus 33 s~~~~~~~l~~~~iG~GiL~LP~~~~~-~G--~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~~ 109 (326)
.....-+.++.-..|+|=|..|-...+ +| |+.+.+.+++.+..--.-.. .+... .+ .++.|++++
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgi----iava~-------~~-g~~~~l~~r 76 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTV----VALAK-------VG-GGVDSLSTP 76 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHH----HHHhh-------cC-CCHHHHhhh
Confidence 455667788888999999998876553 43 66666666666544333321 22221 11 267777776
Q ss_pred hhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHh----HHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHH-
Q 020421 110 CMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQN----LFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFA- 184 (326)
Q Consensus 110 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~----l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~- 184 (326)
.- |+...+....+.+ ++|-+.+-=+..+.. +.+++++ + ....++..++.+.+++.-.++.-+.+..++
T Consensus 77 v~-~~f~~~f~~~i~l-~IGP~~aiPRtaavsfEm~i~p~~~~----~-~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK 149 (439)
T PRK15433 77 IG-KVAGVLLATVCYL-AVGPLFATPRTATVSFEVGIAPLTGD----S-ALPLFIYSLVYFAIVILVSLYPGKLLDTVGN 149 (439)
T ss_pred cc-hHHHHHHHHHHHH-HHhhccccCCccccchhheeeccCCc----c-cHHHHHHHHHHHHHHHHHHcChhhHHHHhHH
Confidence 44 4333333222222 222111111111111 1122221 1 112233444444444433344444444444
Q ss_pred --HHHHHHHHHHHHHhhhhhhhcCCC-CCccc--cccccccc---chhhHHHHHHHhhccccchhchHhh-hhcccchH-
Q 020421 185 --DICNVLAMTLVVKEDVQKILGGEF-SFSDR--KAVSSNIR---GLPFAGGMAVFCFEGFGMTFALESS-MRERGRFS- 254 (326)
Q Consensus 185 --~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~--~~~~~~~~---~~~~~~~~~~faf~~~~~i~~i~~~-m~~p~~~~- 254 (326)
+-..+..+.+++..++.++..+.. +.+++ .++..++. +..-+++-.+|+- ..+-.+.+. .+++|+..
T Consensus 150 ~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~---iii~~i~~~G~~~~~~~~k 226 (439)
T PRK15433 150 FLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGI---VIVNAARSRGVTEARLLTR 226 (439)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHcCCCCHHHHHH
Confidence 344455555556666665432211 11111 22222222 2333344444443 333333332 66655443
Q ss_pred ---HHHHHHHHHHHHHHHHHHhHhhhh---cCCC-chhhHhhcC
Q 020421 255 ---KLLAQAFTGITLVYVMFGFFGFMA---YGDD-TKDIVTLNL 291 (326)
Q Consensus 255 ---~~~~~~~~~~~~~y~~~~~~gy~~---fG~~-~~~~il~n~ 291 (326)
++-.++.....++|...+..|... +++. ..+.++...
T Consensus 227 ~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~ 270 (439)
T PRK15433 227 YTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAY 270 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHH
Confidence 444566666788899998888765 3322 234555544
|
|
| >KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.74 E-value=18 Score=34.18 Aligned_cols=249 Identities=12% Similarity=0.013 Sum_probs=121.7
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhc--HhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAG--WLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGD 105 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G--~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~ 105 (326)
.++.-|+++-...=....++++-.-....--+.| |+-+++...+.-++...-. ..+..++. .-..+++-
T Consensus 52 ~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~f~-----~lns~~G~----~yhIsFpv 122 (572)
T KOG2466|consen 52 SRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAIFL-----VLNSRPGS----DYHISFPV 122 (572)
T ss_pred ccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHHHH-----HHccCCCc----ccccceee
Confidence 5666788888877777777777776666666666 4444544444332222211 22221111 22345666
Q ss_pred hHHHhhhhhhHH---HHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhc-------------cCCchhHHHH--HHHHHHHH
Q 020421 106 LGYKCMGKAGRF---LTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSY-------------TSLTYRSFIF--LVVPVQIL 167 (326)
Q Consensus 106 l~~~~~G~~~~~---~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~-------------~~~~~~~~~~--i~~~~~~p 167 (326)
..|.-||-++.. +..+......+|. ..-..++.++.+++.. .+.++..++- ++-++-+|
T Consensus 123 ~sR~sFGiygS~~pIi~R~vma~vwYg~---~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~ 199 (572)
T KOG2466|consen 123 LSRSSFGIYGSLWPIINRVVMACVWYGV---NAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLP 199 (572)
T ss_pred eeeeehhhhHhHHHHHHHHHHHHhhhhh---hhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhh
Confidence 666666665443 3333333333332 2223344444433332 1123333332 33333333
Q ss_pred HhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhc-CCCCCcccccccccccchhhHHHHHHHhhc----cccchhc
Q 020421 168 LSWINSLSALAPFSIFADICNVLAMTLVVKEDVQKILG-GEFSFSDRKAVSSNIRGLPFAGGMAVFCFE----GFGMTFA 242 (326)
Q Consensus 168 l~~~~~l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~faf~----~~~~i~~ 242 (326)
..+ ...++++++-....+....+...+++....+-.. ++..++.... . +.......+-.++.++. ...|.|.
T Consensus 200 ~~~-~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~-~-gs~~aWa~~~~i~~~~~~fstl~~N~pD 276 (572)
T KOG2466|consen 200 FYW-FPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTV-S-GSAHAWAFVRSIMSCIANFSTLIVNAPD 276 (572)
T ss_pred eee-ccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcc-c-ccchhHHHHHHHHHHHhccchhhccCch
Confidence 333 3556666666665555555544444454443211 1111111111 1 12222222223344433 3456778
Q ss_pred hHhhhhcccchHHHHHH----HHHHHHHHHHHHHhHhhhhcCCCch--hhHhhcC
Q 020421 243 LESSMRERGRFSKLLAQ----AFTGITLVYVMFGFFGFMAYGDDTK--DIVTLNL 291 (326)
Q Consensus 243 i~~~m~~p~~~~~~~~~----~~~~~~~~y~~~~~~gy~~fG~~~~--~~il~n~ 291 (326)
..|--|+|.+....-.. .+.+..++=++.+..++..||.+.- -+++.++
T Consensus 277 FsRF~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~ 331 (572)
T KOG2466|consen 277 FSRFAKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQW 331 (572)
T ss_pred hHhhcCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHH
Confidence 88888888775544444 4444445555555678899998764 3666666
|
|
| >KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.44 E-value=1.5 Score=42.40 Aligned_cols=238 Identities=11% Similarity=-0.021 Sum_probs=125.8
Q ss_pred CCCCCHHHHHHHHHHhhhhhh-cchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhH
Q 020421 29 TGTASAAQTLGNIIVSIVGTG-VLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLG 107 (326)
Q Consensus 29 ~~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 107 (326)
.++..++...+.++.+.+|++ ++++|...++.|.-.....+... . ..+..++-..|---+ .+..+..|.-
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l-----~--~~~~~~~~f~Pvf~~--~~v~~~~eYl 114 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNAL-----L--SVLLLGWIFIPVFYR--LGVTTMYEYL 114 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHH-----H--HHHhhheEEEEEEEe--cCeeehhHHH
Confidence 345666666777778888777 66899988888765422211111 1 111222332221100 4566777778
Q ss_pred HHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHH
Q 020421 108 YKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADIC 187 (326)
Q Consensus 108 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 187 (326)
++-||+..+....+...++.+.-.......-+-.+++.... +......+..++..-......++..-|.-.+-...
T Consensus 115 ~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~----~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~~i 190 (585)
T KOG2349|consen 115 EKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGI----NLYLIVVILGLICVFYTALGGLKAVIWTDVVQTVI 190 (585)
T ss_pred HHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhcc----CceeehHHHHHHHHHHHHhcCeeEEEEhhHHHHHH
Confidence 88899988777777777776665555555555455554432 22211112223333345566778888888888877
Q ss_pred HHHHHHHHHHhhhhhhhc---------CC-------CCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhccc
Q 020421 188 NVLAMTLVVKEDVQKILG---------GE-------FSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERG 251 (326)
Q Consensus 188 ~~~~~~~i~~~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~ 251 (326)
++..+..+.+.+..+... +. +...++.....-|.-++.........|..+.+...=+-.+|+-+
T Consensus 191 ml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl~slk 270 (585)
T KOG2349|consen 191 MLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSLPSLK 270 (585)
T ss_pred HHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhccccHH
Confidence 777776666655443211 00 00111111111134344444445555555555544333445546
Q ss_pred chHHHHHHHHHHHHHHHHH---HHhHhhhhc
Q 020421 252 RFSKLLAQAFTGITLVYVM---FGFFGFMAY 279 (326)
Q Consensus 252 ~~~~~~~~~~~~~~~~y~~---~~~~gy~~f 279 (326)
+.++.+........+.... .|++.|..|
T Consensus 271 ~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y 301 (585)
T KOG2349|consen 271 HAKPSLLLFGYGVLLIMFIMVFVGMIIYALY 301 (585)
T ss_pred HhhhhhhhhhhHHHHHHHhhcccceeEeeec
Confidence 6666666555555555444 444555455
|
|
| >PRK09928 choline transport protein BetT; Provisional | Back alignment and domain information |
|---|
Probab=84.67 E-value=45 Score=33.26 Aligned_cols=119 Identities=13% Similarity=-0.024 Sum_probs=60.9
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchh----HHHHH-h--hc-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGL----PFAFR-V--AG-------WLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSE 93 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~L----P~~~~-~--~G-------~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~ 93 (326)
.+++.|.++-+..++.+.+|+|++.- |..-. . .| .-.+....++-+.+..++.+.+.-..-.+-.-
T Consensus 89 ~kPefS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~y 168 (679)
T PRK09928 89 SKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSY 168 (679)
T ss_pred CCCCCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 35667888888899999999998865 32211 1 11 11234444555555555444444433332221
Q ss_pred cCCCCCcCcchhhHH-----HhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhc
Q 020421 94 DTSSTETKTYGDLGY-----KCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSY 149 (326)
Q Consensus 94 ~~~~~~~~~y~~l~~-----~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~ 149 (326)
++ +...+.....+ +..|+.| .++|+...+...+...+-+-+....++.-+...
T Consensus 169 r~--~~pl~issal~pllG~ri~G~~G-~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~l 226 (679)
T PRK09928 169 RY--NLPLTIRSALYPIFGKRINGPIG-HSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVL 226 (679)
T ss_pred cC--CCCCchhHhhhhhcCCCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11133444443 4444444 566666666555555555555555555544444
|
|
| >PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional | Back alignment and domain information |
|---|
Probab=83.60 E-value=43 Score=32.20 Aligned_cols=118 Identities=8% Similarity=-0.091 Sum_probs=70.2
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcchh----HHHHHh---hc--------HhhHHHHHHHHHHHHHHHHHHHHH---HHHHh
Q 020421 29 TGTASAAQTLGNIIVSIVGTGVLGL----PFAFRV---AG--------WLAGCLGVMIAGLSTYYCMLLLIQ---CRDKL 90 (326)
Q Consensus 29 ~~~~s~~~~~~~l~~~~iG~GiL~L----P~~~~~---~G--------~~~g~i~~i~~~~~~~~~~~~l~~---~~~~~ 90 (326)
+++-|.++-...++.+-+|+|++.- |....+ .| .-.+.....+-+.+..++.+.+.- +...+
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~y 162 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFFF 162 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 5667888888899999999999865 322221 12 112334444444444444444433 33344
Q ss_pred ccccCCCCCcCcchhhHHHhhhh-----hhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhcc
Q 020421 91 VSEDTSSTETKTYGDLGYKCMGK-----AGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYT 150 (326)
Q Consensus 91 ~~~~~~~~~~~~y~~l~~~~~G~-----~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~ 150 (326)
+++ .+....++..+-.+|+ +.+.++|+...+...+....-+-+....++.-+++..
T Consensus 163 ~~~----~p~l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~ 223 (504)
T PRK03356 163 VRK----MDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLF 223 (504)
T ss_pred hcC----CCcccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 332 1212456666666663 2467888888887777777777777777777666653
|
|
| >COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.33 E-value=44 Score=31.32 Aligned_cols=73 Identities=11% Similarity=-0.040 Sum_probs=52.8
Q ss_pred cCcchhhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHH-HHHHHHHHHHhhhhcCCch
Q 020421 100 TKTYGDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFI-FLVVPVQILLSWINSLSAL 177 (326)
Q Consensus 100 ~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~-~i~~~~~~pl~~~~~l~~l 177 (326)
..+..|..++.|+|+..++..+...+....+.++..+..+-.++-++. .+..+. +++.+..+.+...++-+.+
T Consensus 76 G~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~-----ip~~~g~iItav~~~iil~~~~~r~~ 149 (416)
T COG1914 76 GKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG-----IPLIIGAVITAVDVLIILLLKGYRLL 149 (416)
T ss_pred CCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHHHHHhcchHHH
Confidence 347788889999999999999999999999999999999988888775 233343 3444444444444433333
|
|
| >PRK09950 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=80.53 E-value=57 Score=31.45 Aligned_cols=154 Identities=12% Similarity=-0.002 Sum_probs=84.9
Q ss_pred CCCCCHHHHHHHHHHhhhhhhcchh----HHHHHh---hc--------HhhHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 020421 29 TGTASAAQTLGNIIVSIVGTGVLGL----PFAFRV---AG--------WLAGCLGVMIAGLSTYYCMLLLIQCRDKL--- 90 (326)
Q Consensus 29 ~~~~s~~~~~~~l~~~~iG~GiL~L----P~~~~~---~G--------~~~g~i~~i~~~~~~~~~~~~l~~~~~~~--- 90 (326)
+++.|.++-...++.+.+|+|++.- |..-.+ .| .-.+.....+-+.+..++.+.+.-..-.+
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~ 160 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFH 160 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5667888888899999999998864 322221 11 11233444454444444444444333332
Q ss_pred -ccccCCCCCcCcchhhHHHhhhh----hhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchh--HHH--HHH
Q 020421 91 -VSEDTSSTETKTYGDLGYKCMGK----AGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYR--SFI--FLV 161 (326)
Q Consensus 91 -~~~~~~~~~~~~y~~l~~~~~G~----~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~--~~~--~i~ 161 (326)
++ ++..+.++..+-.+|+ +.+.++|+...+...+...+-+-+....++.-+.+..+.... ... ++.
T Consensus 161 ~rk-----~~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~v 235 (506)
T PRK09950 161 VRK-----NKGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNNFTVQAFVILL 235 (506)
T ss_pred hhc-----CCCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 22 3444566666666664 345788888888777777777777777777766665333221 111 233
Q ss_pred HHHHHHHhhhhcC-CchhhHHHHHHHH
Q 020421 162 VPVQILLSWINSL-SALAPFSIFADIC 187 (326)
Q Consensus 162 ~~~~~pl~~~~~l-~~l~~~s~~~~~~ 187 (326)
..+++.++....+ |..+++|.+....
T Consensus 236 i~~if~~S~~~Gl~kGIk~LS~~N~~l 262 (506)
T PRK09950 236 SGVIFCLSSYIGIDNGLQRLSKMVGWG 262 (506)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333344555455 2245555444333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 326 | |||
| 3l1l_A | 445 | Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC | 99.77 | |
| 3gia_A | 444 | Uncharacterized protein MJ0609; membrane protein, | 99.67 | |
| 4djk_A | 511 | Probable glutamate/gamma-aminobutyrate antiporter; | 99.47 | |
| 2jln_A | 501 | MHP1; hydantoin, transporter, membrane protein, nu | 98.82 | |
| 3dh4_A | 530 | Sodium/glucose cotransporter; membrane protein, sy | 97.78 | |
| 2xq2_A | 593 | Sodium/glucose cotransporter; transport protein, i | 97.39 | |
| 2a65_A | 519 | Leutaa, Na(+):neurotransmitter symporter (SNF fami | 92.99 | |
| 4ain_A | 539 | Glycine betaine transporter BETP; membrane protein | 84.42 |
| >3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-17 Score=150.24 Aligned_cols=245 Identities=11% Similarity=0.059 Sum_probs=177.7
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhH
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLG 107 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 107 (326)
.+++.+.++.++..+++++|+|++.+|....++|.. +++.+++.++........+.|...+.| +.....+..
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p-------~~Gg~y~~~ 77 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDP-------SPGGSYAYA 77 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCC-------CTTTHHHHH
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCC-------CCCCchhhH
Confidence 567899999999999999999999999988888864 688899999999999999999999885 344566678
Q ss_pred HHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHH-HHHHHHHHHhhhhcCCchhhHHHHHHH
Q 020421 108 YKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIF-LVVPVQILLSWINSLSALAPFSIFADI 186 (326)
Q Consensus 108 ~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~~ 186 (326)
++.+||+.+++..+..++........+....++++..+++.... ....+.+ +..++.+.....++.+...+++.....
T Consensus 78 ~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~ 156 (445)
T 3l1l_A 78 RRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKD-PWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATV 156 (445)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGS-HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccc-cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 99999999999999999988888888888888888776664211 1112222 333333344555677777777776666
Q ss_pred HHHHHHHHHHHhhhhhhhcCCCCCcccc-cccccccchhhHHHHHHHhhccccchhchHhhhhccc-chHHHHHHHHHHH
Q 020421 187 CNVLAMTLVVKEDVQKILGGEFSFSDRK-AVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERG-RFSKLLAQAFTGI 264 (326)
Q Consensus 187 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~-~~~~~~~~~~~~~ 264 (326)
..+..++.++...+.....+ ...+..+ ....++.++..++...+|+|.|.+......+|+|||+ +.+|++..+..++
T Consensus 157 ~~i~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~ 235 (445)
T 3l1l_A 157 LALIPIVGIAVFGWFWFRGE-TYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIA 235 (445)
T ss_dssp HHHHHHHHHHHTTSTTCCCC-CCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhChh-hcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHH
Confidence 65555554444443321111 0001111 1011366788999999999999999999999999985 5999999999999
Q ss_pred HHHHHHHHhHhhhhcCCC
Q 020421 265 TLVYVMFGFFGFMAYGDD 282 (326)
Q Consensus 265 ~~~y~~~~~~gy~~fG~~ 282 (326)
+++|+...+......+.+
T Consensus 236 ~~~y~~~~~~~~~~~~~~ 253 (445)
T 3l1l_A 236 AVCYVLSTTAIMGMIPNA 253 (445)
T ss_dssp HHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhcCCHH
Confidence 999999998877776543
|
| >3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C | Back alignment and structure |
|---|
Probab=99.67 E-value=6.5e-15 Score=137.20 Aligned_cols=239 Identities=11% Similarity=0.102 Sum_probs=173.7
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchhHH-HHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGLPF-AFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~LP~-~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
++++.+.++.++..+++++|+|++.+|. +...+|. ..++.+++.+++.......+.|...++| +.....+.
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P-------~~Gg~y~~ 75 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIV-------SNAGPIAF 75 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCC-------CTTTHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCC-------CCCcHHHh
Confidence 4678999999999999999999998875 4555666 6788899999999999999999999885 33445567
Q ss_pred HHHhhhhhh-HHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCchhHHH---HHHHHHHHHHhhhhcCCchhhHHH
Q 020421 107 GYKCMGKAG-RFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFI---FLVVPVQILLSWINSLSALAPFSI 182 (326)
Q Consensus 107 ~~~~~G~~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~---~i~~~~~~pl~~~~~l~~l~~~s~ 182 (326)
.++.+||+. .....+..++........+....++++..+++.. ....+. .+...+++.....++.+...+++.
T Consensus 76 ~~~~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~ 152 (444)
T 3gia_A 76 IHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAP---INTFNIAITEIGIVAFFTALNFFGSKAVGRAEF 152 (444)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 899999962 3344567777777778888888999998887652 222221 133333334455567777777777
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcCCCCCcccccccccccchhhHHHHHHHhhccccchhchHhhhhcccc-hHHHHHHHH
Q 020421 183 FADICNVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FSKLLAQAF 261 (326)
Q Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~~~~~~~~ 261 (326)
......+..++.++...+... + ..+.. ....+.++.++..++...+|+|.|.+......+|+|||+| .+|++..+.
T Consensus 153 ~~~~~~i~~~~~~ii~~~~~~-~-~~~~~-~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~ 229 (444)
T 3gia_A 153 FIVLVKLLILGLFIFAGLITI-H-PSYVI-PDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISI 229 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-C-GGGTS-CCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHc-C-hhhcC-CCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHH
Confidence 766665555554444444332 1 11111 1112224667888899999999999999999999999966 999999999
Q ss_pred HHHHHHHHHHHhHhhhhcC
Q 020421 262 TGITLVYVMFGFFGFMAYG 280 (326)
Q Consensus 262 ~~~~~~y~~~~~~gy~~fG 280 (326)
.+++++|+...+......+
T Consensus 230 ~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 230 LIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 9999999998887666654
|
| >4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-11 Score=114.56 Aligned_cols=244 Identities=11% Similarity=0.066 Sum_probs=153.0
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhhcchhHHHHHhhcHhhHHHHHHHHHHHHH-HHHHHHHHHHH--HhccccCCCCCcCcc
Q 020421 27 RVTGTASAAQTLGNIIVSIVGTGVLGLPFAFRVAGWLAGCLGVMIAGLSTY-YCMLLLIQCRD--KLVSEDTSSTETKTY 103 (326)
Q Consensus 27 ~~~~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~~G~~~g~i~~i~~~~~~~-~~~~~l~~~~~--~~~~~~~~~~~~~~y 103 (326)
+.+++.+.++.++..++.++| +..+|. ....|... ++..++.+.+.. .....+.|... ..| ....
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~~-~~~~~i~~~~~~l~~al~~ael~s~~~~P--------~GG~ 75 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFSL-VFFLLLGGILWFIPVGLCAAEMATVDGWE--------EGGV 75 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTHH-HHHHHHHHHHTHHHHHHHHHHHHTTSCC-----------CH
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHcccccCC--------CCCh
Confidence 356789999999999999986 567775 45666533 444444444433 36777788887 763 3455
Q ss_pred hhhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHh--hhccCCchhHHHH-HHHHHHHHHhhhhcCCchhhH
Q 020421 104 GDLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIF--KSYTSLTYRSFIF-LVVPVQILLSWINSLSALAPF 180 (326)
Q Consensus 104 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~--~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~ 180 (326)
...+++.+||+.+++..+..++........+....++.+..++ +.........+.+ +..++++.....+..+...++
T Consensus 76 y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~ 155 (511)
T 4djk_A 76 FAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARI 155 (511)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHHHH
T ss_pred hhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 5668999999999999999999888888888888888776553 3321111112222 333333445556677777777
Q ss_pred HHHHHHH-HHHHHHHHHHhhhhhhhcCCCC---Ccccccccc-cccchhhHHHHHHHhhccccchhchHhhhhcccc-hH
Q 020421 181 SIFADIC-NVLAMTLVVKEDVQKILGGEFS---FSDRKAVSS-NIRGLPFAGGMAVFCFEGFGMTFALESSMRERGR-FS 254 (326)
Q Consensus 181 s~~~~~~-~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~-~~ 254 (326)
+...... .+..+++++..++.....+.+. .+..+.++. ...+...++...+|+|.|.+......+|+|||+| .+
T Consensus 156 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip 235 (511)
T 4djk_A 156 AKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYP 235 (511)
T ss_dssp THHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchh
Confidence 7665443 2222222222222211111110 010111111 1224556678899999999999999999999865 99
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhcCCC
Q 020421 255 KLLAQAFTGITLVYVMFGFFGFMAYGDD 282 (326)
Q Consensus 255 ~~~~~~~~~~~~~y~~~~~~gy~~fG~~ 282 (326)
|++..++.+++++|+...+......+++
T Consensus 236 ~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 236 LAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 9999999999999999998777766543
|
| >2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.4e-06 Score=81.91 Aligned_cols=250 Identities=6% Similarity=-0.073 Sum_probs=146.9
Q ss_pred CCCCHHHHHHHHHHhhhhhhcchhHHHHHh-hcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhHH
Q 020421 30 GTASAAQTLGNIIVSIVGTGVLGLPFAFRV-AGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLGY 108 (326)
Q Consensus 30 ~~~s~~~~~~~l~~~~iG~GiL~LP~~~~~-~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~~ 108 (326)
|+.++++-+..-++..++.+-+.+...+.. .++..+++..++..++......+......+. ..++.++.|
T Consensus 25 R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~---------Gl~~~v~~R 95 (501)
T 2jln_A 25 RSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRW---------GINFTVAAR 95 (501)
T ss_dssp CCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHH---------CCCHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhc---------CCChhhhhH
Confidence 446888888777887777777766654443 4456666666666665555554444444443 336899999
Q ss_pred HhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhccCCch-hHHHHHHHHHHHHHhhhhcCCchhhHHHHHHHH
Q 020421 109 KCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSYTSLTY-RSFIFLVVPVQILLSWINSLSALAPFSIFADIC 187 (326)
Q Consensus 109 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~-~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 187 (326)
..||+++..+..+...+..+|-........++.+..++....+.+. ....+++.++.++.. ....+.+++++......
T Consensus 96 ~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~-~~G~~~i~~~~~~~~p~ 174 (501)
T 2jln_A 96 MPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTT-FYGITFIRWMNVFASPV 174 (501)
T ss_dssp TTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888889998887754322332 223334555555555 45677777777777666
Q ss_pred HHHHHHHHHHhhhhhhhcCCCCCcccccccccccchhhHHHHH-HHhhccccchhchHhhhhcccc------------hH
Q 020421 188 NVLAMTLVVKEDVQKILGGEFSFSDRKAVSSNIRGLPFAGGMA-VFCFEGFGMTFALESSMRERGR------------FS 254 (326)
Q Consensus 188 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~faf~~~~~i~~i~~~m~~p~~------------~~ 254 (326)
.++..+.+.+..+.+......+..+.+. +.....+..++... .+.-....+.+.+.+.+|++++ ..
T Consensus 175 ~~i~~i~~~~~~l~~~g~~~~~~~~~~~-~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~ 253 (501)
T 2jln_A 175 LLAMGVYMVYLMLDGADVSLGEVMSMGG-ENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYA 253 (501)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHTTCCC-SSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcchhhhccCC-ccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHH
Confidence 5555554444443331000000001111 01233444444332 2222334667888999988766 33
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhcCCCchhhHhhc
Q 020421 255 KLLAQAFTGITLVYVMFGFFGFMAYGDDTKDIVTLN 290 (326)
Q Consensus 255 ~~~~~~~~~~~~~y~~~~~~gy~~fG~~~~~~il~n 290 (326)
+....+..+...+...+|...-...+.+....++..
T Consensus 254 ~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~ 289 (501)
T 2jln_A 254 TAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITE 289 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHH
Confidence 344455555555555666544333443333444444
|
| >3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0063 Score=57.44 Aligned_cols=159 Identities=11% Similarity=0.009 Sum_probs=92.8
Q ss_pred CCCCCCHHHHHHHHHHhhhhhh-cchhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 28 VTGTASAAQTLGNIIVSIVGTG-VLGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
..|+.+++...+.+..+.+++. .+.+|...+..|+......... ++........+.....+ .+..|..|+
T Consensus 18 aGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~--------~~~~T~~e~ 88 (530)
T 3dh4_A 18 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE--------KGIYTIPEF 88 (530)
T ss_dssp CCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHH--------TTCCSHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHH--------cCCccHHHH
Confidence 3567899999999998888877 5579998888887543211111 11111122222222333 477899999
Q ss_pred HHHhhhhhhHHHHHHHHHH-HHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHH
Q 020421 107 GYKCMGKAGRFLTEFLIFT-SQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFAD 185 (326)
Q Consensus 107 ~~~~~G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 185 (326)
-++-||++.+.+..+...+ +.+..+.+.+...+..++.+++ .+...-.++..++.........++...+...+-.
T Consensus 89 l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G----i~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~ 164 (530)
T 3dh4_A 89 VEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG----IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQV 164 (530)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----CCHHHHHHHHHHHHHHTTC------CCSHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 9999999988777665443 2333333333344545555543 4555445566666666677789999988888887
Q ss_pred HHHHHHHHHHHHhh
Q 020421 186 ICNVLAMTLVVKED 199 (326)
Q Consensus 186 ~~~~~~~~~i~~~~ 199 (326)
+.+++..+++.+..
T Consensus 165 ~im~~g~~~v~~~~ 178 (530)
T 3dh4_A 165 FFLVLGGFMTTYMA 178 (530)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77666554444333
|
| >2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.05 Score=52.02 Aligned_cols=156 Identities=12% Similarity=0.011 Sum_probs=90.1
Q ss_pred CCCCCHHHHHHHHHHhhhhhhc-chhHHHHHhhcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcCcchhhH
Q 020421 29 TGTASAAQTLGNIIVSIVGTGV-LGLPFAFRVAGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDLG 107 (326)
Q Consensus 29 ~~~~s~~~~~~~l~~~~iG~Gi-L~LP~~~~~~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l~ 107 (326)
.|+.+++.....+..+.+++.. +..|...++.|+......+.. ++........+..-..+ .+..|..|.-
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~r--------~~~~T~~e~l 118 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE--------KGIYTIPEFV 118 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHHHHHHH--------TTCCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHh--------CCCCCcHHHH
Confidence 4567899888888888887774 578988888887532221111 11111112222222222 4778999999
Q ss_pred HHhhhhhhHHHHHHHHHH-HHhhhHHHHHHHHHHhHHHHhhhccCCchhHHHHHHHHHHHHHhhhhcCCchhhHHHHHHH
Q 020421 108 YKCMGKAGRFLTEFLIFT-SQCGGSVAYLVFIGQNLFSIFKSYTSLTYRSFIFLVVPVQILLSWINSLSALAPFSIFADI 186 (326)
Q Consensus 108 ~~~~G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 186 (326)
++-||++.+.+..+...+ ..+......+...+..++.+++ .+.....++..++.........++...+...+-.+
T Consensus 119 ~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G----i~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~i 194 (593)
T 2xq2_A 119 EKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG----IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVF 194 (593)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHH
T ss_pred HHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----ccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999887777655443 3333333444445555666554 45544444555555666777889988888887776
Q ss_pred HHHHHHHHHHH
Q 020421 187 CNVLAMTLVVK 197 (326)
Q Consensus 187 ~~~~~~~~i~~ 197 (326)
.++...+++.+
T Consensus 195 iml~~~l~v~~ 205 (593)
T 2xq2_A 195 FLVLGGFMTTY 205 (593)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66555444433
|
| >2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... | Back alignment and structure |
|---|
Probab=92.99 E-value=5.8 Score=36.95 Aligned_cols=221 Identities=13% Similarity=0.025 Sum_probs=108.0
Q ss_pred CCCCHHHHHHHHHHhhhhhh-cchhHHHHHhhcHhhHHHHHH----HHHHHHHHHHHHHHHHHHHhccccCCCCCcCcch
Q 020421 30 GTASAAQTLGNIIVSIVGTG-VLGLPFAFRVAGWLAGCLGVM----IAGLSTYYCMLLLIQCRDKLVSEDTSSTETKTYG 104 (326)
Q Consensus 30 ~~~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~~i----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~ 104 (326)
+=.|...-....+++.+|.| +.-.||...+-|...-++..+ +.++-..+.-..+.|-..+. .+.+....|.
T Consensus 7 ~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~----~r~~~i~a~~ 82 (519)
T 2a65_A 7 HWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQ----GHGTTPAIFY 82 (519)
T ss_dssp CCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----TCCSHHHHHH
T ss_pred cCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhc----cCCCHHHHHH
Confidence 34678888999999999999 778999888877544344333 33333333333333321111 1002233343
Q ss_pred hhHHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhc----------------------------cCCc---
Q 020421 105 DLGYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSY----------------------------TSLT--- 153 (326)
Q Consensus 105 ~l~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~----------------------------~~~~--- 153 (326)
+++++ +....+.+...+..+..++-|.+..+-.+..++... .+.+
T Consensus 83 ~l~~~----~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~ 158 (519)
T 2a65_A 83 LLWRN----RFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGD 158 (519)
T ss_dssp HHSCS----HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSS
T ss_pred HhcCC----cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCc
Confidence 33321 111112222222223233333333332222221111 0000
Q ss_pred -----hhHHHH---HHHHHHHHHhhhhcC-CchhhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCCc-----ccccccc-
Q 020421 154 -----YRSFIF---LVVPVQILLSWINSL-SALAPFSIFADICNVLAMTLVVKEDVQKILGGEFSFS-----DRKAVSS- 218 (326)
Q Consensus 154 -----~~~~~~---i~~~~~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~- 218 (326)
.++-.+ ....++.-++..|.+ +...+++.+...+..+.+++++++++.-.-+.....+ -.|.+..
T Consensus 159 ~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L 238 (519)
T 2a65_A 159 EPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKL 238 (519)
T ss_dssp SCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTST
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHh
Confidence 011112 222223345677888 5577888777666666666666666553210000000 0111110
Q ss_pred -cccchhhHHHHHHHhhc-cccchhchHhhhhcccchHHHHH
Q 020421 219 -NIRGLPFAGGMAVFCFE-GFGMTFALESSMRERGRFSKLLA 258 (326)
Q Consensus 219 -~~~~~~~~~~~~~faf~-~~~~i~~i~~~m~~p~~~~~~~~ 258 (326)
+..-...|.+-++|+.. |...+..+.+.+|++++..+...
T Consensus 239 ~~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~ 280 (519)
T 2a65_A 239 KDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGL 280 (519)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHH
Confidence 12346788888999984 56777777778887777665433
|
| >4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A | Back alignment and structure |
|---|
Probab=84.42 E-value=21 Score=33.27 Aligned_cols=121 Identities=11% Similarity=0.045 Sum_probs=67.0
Q ss_pred CCCCCCHHHHHHHHHHhhhhhhcchh----HHHHHh--------hcHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cc
Q 020421 28 VTGTASAAQTLGNIIVSIVGTGVLGL----PFAFRV--------AGWLAGCLGVMIAGLSTYYCMLLLIQCRDKLVS-ED 94 (326)
Q Consensus 28 ~~~~~s~~~~~~~l~~~~iG~GiL~L----P~~~~~--------~G~~~g~i~~i~~~~~~~~~~~~l~~~~~~~~~-~~ 94 (326)
.+++.|.++-+..++.+-+|+|++.- |..-.+ ...-.+....++-+.+.-++.+.+.-..-.+-. ++
T Consensus 92 ~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk 171 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRV 171 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCT
T ss_pred CCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcC
Confidence 46778999999999999999998854 322111 112234555556555555555555444433322 11
Q ss_pred CCC--CCcCcchhhHHH-hhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHhhhc
Q 020421 95 TSS--TETKTYGDLGYK-CMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFSIFKSY 149 (326)
Q Consensus 95 ~~~--~~~~~y~~l~~~-~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~ 149 (326)
+.+ -+..-|+=++++ ..|+.| .++|+.-.+.......+-+-+....++.-+++.
T Consensus 172 ~~pl~iss~l~PllG~r~~~G~~G-~~IDilav~atv~GvatSLGlg~~Qi~~Gl~~l 228 (539)
T 4ain_A 172 GRKQLLSSAFVPLIGEKGAEGWLG-KLIDILAIIATVFGTACSLGLGALQIGAGLSAA 228 (539)
T ss_dssp CCCSCTTGGGHHHHHHHHTTSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHhHhhcCCCccCCcch-hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 111 122223444555 555554 577777776655555555555555555544444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 326 | |||
| d2a65a1 | 509 | Na(+):neurotransmitter symporter homologue LeuT {A | 93.78 |
| >d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: SNF-like superfamily: SNF-like family: SNF-like domain: Na(+):neurotransmitter symporter homologue LeuT species: Aquifex aeolicus [TaxId: 63363]
Probab=93.78 E-value=2 Score=37.75 Aligned_cols=105 Identities=14% Similarity=0.019 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHhhhhhh-cchhHHHHHhhcHhhHHHHHHHH----HHHHHHHHHHHHHHHHHhccccCCCCCcCcchhh
Q 020421 32 ASAAQTLGNIIVSIVGTG-VLGLPFAFRVAGWLAGCLGVMIA----GLSTYYCMLLLIQCRDKLVSEDTSSTETKTYGDL 106 (326)
Q Consensus 32 ~s~~~~~~~l~~~~iG~G-iL~LP~~~~~~G~~~g~i~~i~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~y~~l 106 (326)
.|..+-+...++..+|.| +.-.|+...+-|...-++..++. +.=..+.-..+.|-.++ .....+..+
T Consensus 5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~--------g~i~~~~~i 76 (509)
T d2a65a1 5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA--------QGHGTTPAI 76 (509)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------TTCCSHHHH
T ss_pred CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC--------CcccHHHHH
Confidence 577888999999999998 66799988776544434444443 33333333344443333 455566666
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhHHHHHHHHHHhHHH
Q 020421 107 GYKCMGKAGRFLTEFLIFTSQCGGSVAYLVFIGQNLFS 144 (326)
Q Consensus 107 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 144 (326)
.....+++....+.+...+..+..++-|.+..+-.+..
T Consensus 77 ~~~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y 114 (509)
T d2a65a1 77 FYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGF 114 (509)
T ss_dssp HHHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555443333444444455555555566665554443
|