Citrus Sinensis ID: 020422

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSVHSLLVGLPLVFHLSLL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHccccHHHHHHHHHHHHHHHHHHHEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEEEHHHHHHHc
Coil and Loop (DISEMBL)
mesvdsrdeeaplvadslqvltpknytrdVHILSCAFLLIFLAYGAaqnlettvntegnlgtISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANlfpswytmvpasLYLGFAASIIWVGEGTYLTAAALSHasnhklhegtvigsfngefwgmfashQFVGNLITLAVlkddkggstsgtTLLFIVFLGVITLGTILMCFLRkeedkgeketadASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEivtpalgvsgvggaMAVYGAFDAISLLGFATFFSVHSLLVGLPLVFHLSLL
Flexible Loop (DISEMBL)
mesvdsrdeeaplvadslqvltpknYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSVHSLLVGLPLVFHLSLL
Low Complexity Region (SEG)
MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSVHSLLVGLPLVFHLSLL
Disordered region (IsUnstruct)
***************DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK**********DASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSVHSLLVGLPLVFHLS**
Disordered Region (DISOPRED)
*************************YTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKE*A*ASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSVHSLLVGLPLVFHLSLL
Disordered Region (DISEMBL)
************LVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE********ADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSVHSLLVGLPLVFHLSLL
Disordered Region (DISPRO)
***********************KNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED***********NFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSVHSLLVGLPLVFHLSLL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSVHSLLVGLPLVFHLSLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	326	2.2.26 [Sep-21-2011]
Q94AA1	464	UNC93-like protein 3 OS=A	no	no	0.904	0.635	0.715	1e-115
Q86WB7	457	Protein unc-93 homolog A	no	no	0.904	0.645	0.315	3e-28
Q6DDL7	460	Protein unc-93 homolog A	N/A	no	0.812	0.576	0.297	1e-25
Q710D3	458	Protein unc-93 homolog A	yes	no	0.904	0.644	0.299	2e-24
Q93380	705	Putative potassium channe	yes	no	0.815	0.377	0.303	2e-24
Q9Y115	538	UNC93-like protein OS=Dro	yes	no	0.935	0.566	0.277	1e-22
Q5SPF7	465	Protein unc-93 homolog A	yes	no	0.837	0.587	0.274	5e-22
A2VE54	457	Protein unc-93 homolog A	yes	no	0.822	0.586	0.292	1e-20
O43934	449	UNC93-like protein MFSD11	no	no	0.702	0.510	0.261	8e-14
Q8BJ51	449	UNC93-like protein MFSD11	no	no	0.702	0.510	0.261	9e-14

>sp|Q94AA1|UN933_ARATH UNC93-like protein 3 OS=Arabidopsis thaliana GN=At3g09470 PE=2 SV=1

 Score =  414 bits (1065), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/302 (71%), Positives = 245/302 (81%), Gaps = 7/302 (2%)

Query: 1   MESVDSRDEEAPLVA---DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE 57
           MES +  DEEAPL++   +  +V   K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1   MESRN--DEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD 58

Query: 58  GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPA 117
             LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPA
Sbjct: 59  --LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPA 116

Query: 118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177
           SLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  GNLIT
Sbjct: 117 SLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLIT 176

Query: 178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVS 237
           LA+LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V     L S
Sbjct: 177 LALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVDSLAS 236

Query: 238 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFD 297
           L + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA D
Sbjct: 237 LPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALD 296

Query: 298 AI 299
           A+
Sbjct: 297 AV 298

Arabidopsis thaliana (taxid: 3702)

>sp|Q86WB7|UN93A_HUMAN Protein unc-93 homolog A OS=Homo sapiens GN=UNC93A PE=2 SV=1

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 157/333 (47%), Gaps = 38/333 (11%)

Query: 28  RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
           R+V ++S  FLL+F AYG  Q+L++++ +E  LG  +L  LY      S+ +  L++  L
Sbjct: 6   RNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPLLIERL 65

Query: 87  GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
           G K  +IL   GY  F   N F SWYT++P S+ LG  A+ +W  + TYLT    +HA  
Sbjct: 66  GCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGNTHAEK 125

Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGST----------------- 189
                  ++  + G F+ +F S    GNLI+  V        T                 
Sbjct: 126 AGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSLVFGQTPSQETLPEEQLTSCGASDCLMA 185

Query: 190 --------SGTTLLFIVFLGVITLGTILM-----CFLRKEED-KGEKETADASVNFYSYL 235
                     +  L    LG+ T   +L       FL+   D + E E    SV F+S L
Sbjct: 186 TTTTNSTQRPSQQLVYTLLGIYTGSGVLAVLMIAAFLQPIRDVQRESEGEKKSVPFWSTL 245

Query: 236 VSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGA 295
           +S  K    L  D R+ L+I L  YSGLQQ F+ +E+T+  VT  LG+  VG  M  + A
Sbjct: 246 LSTFK----LYRDKRLCLLILLPLYSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFSA 301

Query: 296 FDAIS--LLGFATFFSVHSLLVGLPLVFHLSLL 326
            DA+   L G  + ++  ++L  L  V H+S +
Sbjct: 302 TDALCSVLYGKVSQYTGRAVLYVLGAVTHVSCM 334

Homo sapiens (taxid: 9606)

>sp|Q6DDL7|UN93A_XENLA Protein unc-93 homolog A OS=Xenopus laevis GN=unc93a PE=2 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 148/319 (46%), Gaps = 54/319 (16%)

Query: 28  RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
           +++ I+S  FLL+F A+G  Q+L++++N++  LG  SL ++Y +    S+ V  +V++ +
Sbjct: 5   KNILIVSFGFLLLFTAFGGLQSLQSSLNSDEGLGVASLSVIYAALIVSSVFVPPIVIKKI 64

Query: 87  GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
           G K  ++     Y  +   N + SWYT++P SL LGF  + +W  + TYLT +   +A  
Sbjct: 65  GCKWTIVASMCCYITYSLGNFYASWYTLIPTSLILGFGGAPLWAAKCTYLTESGNRYAEK 124

Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL--------------------KDDKG 186
                  ++  + G F+ +F S    GNLI+  +                      D  G
Sbjct: 125 KGKLAKDIVNQYFGLFFLIFQSSGVWGNLISSLIFGQNYPAGSNDSFTDYSQCGANDCPG 184

Query: 187 -------GSTSGTTLLFIVFLGVIT----LGTILMCF------LRKEEDK-GEKETADAS 228
                  G+T  T  L    LGV T    L  IL+        LR ++ K G KE     
Sbjct: 185 TNFGNGTGTTKPTKSLIYTLLGVYTGSGVLAVILIAVFLDTINLRTDQLKPGTKEE---- 240

Query: 229 VNFYSYLVSLSKSI---TTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSG 285
                   S SK I      L D R  L+IPL  YSG +Q F+  ++TK  VT +LG+  
Sbjct: 241 --------SFSKKILATVRHLKDKRQCLLIPLTMYSGFEQGFLSGDYTKSYVTCSLGIHF 292

Query: 286 VGGAMAVYGAFDAISLLGF 304
           VG  M  + A +A+  L F
Sbjct: 293 VGYVMICFAATNAVCSLLF 311

Xenopus laevis (taxid: 8355)

>sp|Q710D3|UN93A_MOUSE Protein unc-93 homolog A OS=Mus musculus GN=Unc93a PE=2 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 152/334 (45%), Gaps = 39/334 (11%)

Query: 28  RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
           ++V ++SC FLL+F AYG  QNL++++ +E  LG  +L  LY S    S+ +  ++++  
Sbjct: 6   KNVLVVSCGFLLLFTAYGGLQNLQSSLYSEQGLGVATLSTLYASVLLSSMFLPPILIKKC 65

Query: 87  GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
           G K  ++     Y +F   N   +WYT++P S+ LG  A+ +W  +GTYLT      A  
Sbjct: 66  GCKWTIVGSMCCYVVFSLGNFHANWYTLIPTSILLGLGAAPLWSAQGTYLTTMGNLQAEK 125

Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL-------------------KDDKGG 187
                  V+  + G F+ +F S    GNLI+  V                    KD   G
Sbjct: 126 VGKLGKDVVNQYFGIFFLVFQSSGVWGNLISSLVFGKMSMQEAIPEEQLMSCGAKDCLMG 185

Query: 188 STS------GTTLLFIVFLGVIT----LGTILMC-FLRKEEDK--GEKETADASVNFYSY 234
             +       +  L    LG+ T    L  +L+  FL   EDK   E E        +S 
Sbjct: 186 PAATNSTHHPSQQLIYTLLGIYTGCGVLAILLVAVFLESLEDKLENEGERRPRPPPLWST 245

Query: 235 LVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYG 294
           L+S       L  D R+ L++ L  YSG QQ F+  E+TK  VT ALG+  VG  M  + 
Sbjct: 246 LLS----TFMLFRDKRLCLLMFLPLYSGFQQEFLSGEYTKSYVTCALGIHFVGYVMICFS 301

Query: 295 AFDAIS--LLGFATFFSVHSLLVGLPLVFHLSLL 326
           A  A+   L G  + ++  + L  L    H S +
Sbjct: 302 AMTALCSLLYGKISKYTGRAALYALGAAIHFSCI 335

Mus musculus (taxid: 10090)

>sp|Q93380|UNC93_CAEEL Putative potassium channel regulatory protein unc-93 OS=Caenorhabditis elegans GN=unc-93 PE=1 SV=4

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 145/310 (46%), Gaps = 44/310 (14%)

Query: 32  ILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVLGSKN 90
           ILS AFL +F A+   QNL+T+VN  G+LG+ SL  LY S    SL V S ++  LG K 
Sbjct: 252 ILSVAFLFLFTAFNGLQNLQTSVN--GDLGSDSLVALYLSLAISSLFVPSFMINRLGCKL 309

Query: 91  ALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH 150
             ++    Y+L++  NL P++ +M+PAS++ G AAS IW  +  Y+T   + +AS +   
Sbjct: 310 TFLIAIFVYFLYIVINLRPTYSSMIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFES 369

Query: 151 EGTVIGSFNGEFWGMFASHQFVGNLI-----TLAVLKDDKGGSTS--------------- 190
           + TVI  F G F+ +    Q VGN++     TL+  +  +G   S               
Sbjct: 370 QTTVIVRFFGYFFMIVHCGQVVGNMVSSYIFTLSYSQALRGPEDSIYDSCGYQFPKNLSD 429

Query: 191 ------------GTTLLFIVFLG----VITLGTILMCFLRKEEDKGEKETADASVNFYSY 234
                          +   V L     VI  G I+  FL                N   +
Sbjct: 430 LTELAESNLARPPQKVYVAVCLAYLACVIISGMIMSMFLNALAKDARNRKMAQKFNSEIF 489

Query: 235 LVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYG 294
            + L       L +++ +L++PL  ++GL+QAF+   +TK  V   LG+  +G  MA +G
Sbjct: 490 YLMLKH-----LINIKFMLLVPLTIFNGLEQAFLVGVYTKAFVGCGLGIWQIGFVMACFG 544

Query: 295 AFDAISLLGF 304
             DA+  L F
Sbjct: 545 ISDAVCSLVF 554

May contribute to coordination of muscle contraction as regulatory subunit of a nonessential potassium channel complex.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9Y115|UN93L_DROME UNC93-like protein OS=Drosophila melanogaster GN=CG4928 PE=2 SV=1

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 163/350 (46%), Gaps = 45/350 (12%)

Query: 20  VLTPKNYTR---DVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSF--TC 74
           VL P    R   ++ I+S AF++ F A+    NL++++N +  LGT+SL  +Y +   +C
Sbjct: 33  VLNPGEKWRILKNISIISIAFMVQFTAFQGTANLQSSINAKDGLGTVSLSAIYAALVVSC 92

Query: 75  FSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGT 134
             L  +L++R L  K  L+     Y  ++A  LFP +YT+VPA + +G  A+ +W  + T
Sbjct: 93  IFL-PTLIIRKLTVKWTLVCSMLCYAPYIAFQLFPRFYTLVPAGILVGMGAAPMWASKAT 151

Query: 135 YLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL------------- 181
           YLT     +A   +     +I  F G F+  + S +  GNLI+  VL             
Sbjct: 152 YLTQVGQVYAKITEQAVDAIIVRFFGFFFLAWQSAELWGNLISSLVLSSGAHGGGSSSNT 211

Query: 182 ---KDDKG--GSTSGTT-----------------LLFIVFLGVITLG-TILMCFLRKEED 218
              ++D    G+   TT                  + +++L  I     I+  FL   + 
Sbjct: 212 TVSEEDLQFCGANFCTTGSGGHGNLERPPEDEIFEISMIYLSCIVAAVCIIAFFLDPLKR 271

Query: 219 KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT 278
            GEK     S    S L  LS +    +    + L+IP+  + G++QAF+ A+FT+  V 
Sbjct: 272 YGEKRKGSNSAAELSGLQLLSATFRQ-MKKPNLQLLIPITVFIGMEQAFIGADFTQAYVA 330

Query: 279 PALGVSGVGGAMAVYGAFDAIS--LLGFATFFSVHSLLVGLPLVFHLSLL 326
            ALGV+ +G  M  +G  +A+   L G    +   + ++ L  V H +L+
Sbjct: 331 CALGVNKIGFVMICFGVVNALCSILFGSVMKYIGRTPIIVLGAVVHFTLI 380

Drosophila melanogaster (taxid: 7227)

>sp|Q5SPF7|UN93A_DANRE Protein unc-93 homolog A OS=Danio rerio GN=unc93a PE=3 SV=1

 Score =  105 bits (262), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 85/310 (27%), Positives = 148/310 (47%), Gaps = 37/310 (11%)

Query: 27  TRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRV 85
           T++V ++S  FLL+F AYG  Q+L++++N E  +G ISL ++Y +    S+ +  ++++ 
Sbjct: 5   TKNVLVVSFGFLLLFTAYGGLQSLQSSLNAEEGMGVISLSVIYAAIILSSMFLPPIMIKN 64

Query: 86  LGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145
           LG K  +++    Y  +   NL P W +++  S  LG   S +W  + TYLT +      
Sbjct: 65  LGCKWTIVVSMGCYVAYSFGNLAPGWASLMSTSAILGMGGSPLWSAKCTYLTISGNRQGQ 124

Query: 146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-------------------- 185
            H      +I  + G F+ +F S    GNL++  +   D+                    
Sbjct: 125 KHNKKGQDLINQYFGIFFFIFQSSGVWGNLMSSLIFGQDQNIVPKENLEFCGVSTCLDNF 184

Query: 186 ---GGSTSGTTLLFIVFLGV-ITLGTILMCF-------LRKEEDKGEKETADASVNFYSY 234
              G ST  +  L    LG  I +G + + F       + ++E K E  +   + +F+  
Sbjct: 185 TVIGNSTRPSKHLVDTLLGCYIGVGLLAIIFVAVFLDNIDRDEAK-EFRSTKGNKSFWDT 243

Query: 235 LVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYG 294
            ++  K +       R+LL+IPL  YSG +Q+F+  E+TK  VT ALG+  VG  M  + 
Sbjct: 244 FLATFKLLRD----PRLLLLIPLTMYSGFEQSFLSGEYTKNYVTCALGIHNVGFVMICFA 299

Query: 295 AFDAISLLGF 304
           A +++    F
Sbjct: 300 ASNSLCSFAF 309

Danio rerio (taxid: 7955)

>sp|A2VE54|UN93A_BOVIN Protein unc-93 homolog A OS=Bos taurus GN=UNC93A PE=2 SV=1

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 141/304 (46%), Gaps = 36/304 (11%)

Query: 28  RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
           ++V +LS  FLL+F AYG  Q+L++++ +E  LG  +L  LY      S+ +  +++  L
Sbjct: 6   KNVLVLSFGFLLLFTAYGGLQSLQSSLYSEEGLGVAALSTLYGGMLLSSMFLPPVLIGKL 65

Query: 87  GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
           G K  L+L    Y  F   N + SWYT++PAS+ +G  A+ +W  +GTYLT      A  
Sbjct: 66  GCKWTLVLAMCCYVAFSLGNFYASWYTLIPASVLVGLGAAALWSAQGTYLTIVGNMQARK 125

Query: 147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLI---------TLAVLKDDK------------ 185
                  V+  + G F+ +F S    GNLI         T   + +++            
Sbjct: 126 TGQVGKDVVSQYFGIFFLIFQSSGVWGNLISSLVFGQMPTQGTIPEEQLQACGASDCLMA 185

Query: 186 ----GGSTSGTTLLFIVFLGVIT----LGTILMC-FLRKEED-KGEKETADASVNFYSYL 235
                 +   +  L    LG+ T    L  +LM  FL    D + E E    +  F+S L
Sbjct: 186 TLSANSTNRPSQDLIYTLLGIYTGCGFLAVLLMAVFLEPVRDAQPEGEDEKQAPPFWSTL 245

Query: 236 VSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGA 295
           +S  K +      + +LL       SG +QAF+  ++T+   T ALG+  VG  M  +GA
Sbjct: 246 LSTFKLLRDKRLRLLILLP----MLSGFEQAFLSGDYTRSYTTCALGIQFVGYVMICFGA 301

Query: 296 FDAI 299
            DA+
Sbjct: 302 ADAL 305

Bos taurus (taxid: 9913)

>sp|O43934|MFS11_HUMAN UNC93-like protein MFSD11 OS=Homo sapiens GN=MFSD11 PE=2 SV=2

 Score = 78.2 bits (191), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 116/256 (45%), Gaps = 27/256 (10%)

Query: 29  DVHILSCAFLLIFLAYGAAQNLETTVNTEGNL------GTISLGILYTSFTCFSLVASLV 82
           ++ IL  AF+ +F A+    N+  TV    N       G  S+ I+Y  F+  +L+   V
Sbjct: 10  NIIILGVAFMFMFTAFQTCGNVAQTVIRSLNRTDFHGSGYTSMAIIYGVFSASNLITPSV 69

Query: 83  VRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142
           V ++G + ++      Y +++A  + P  ++   AS+++G AA+++W  +G  LT  +  
Sbjct: 70  VAIVGPQLSMFASGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDE 129

Query: 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGV 202
           H+          IG  +G FW +  S  F GNL      +     S S    +FI    +
Sbjct: 130 HS----------IGRNSGIFWALLQSSLFFGNLYIYFAWQGKTQISESDRRTVFIALTVI 179

Query: 203 ITLGTILMCFLRKEEDK---GEKETAD--------ASVNFYSYLVSLSKSITTLLADVRM 251
             +GT+L   +RK + +   GE E++D        ++ N  +  V   K    L     M
Sbjct: 180 SLVGTVLFFLIRKPDSENVLGEDESSDDQDMEVNESAQNNLTKAVDAFKKSFKLCVTKEM 239

Query: 252 LLIIPLFAYSGLQQAF 267
           LL+    AY+GL+  F
Sbjct: 240 LLLSITTAYTGLELTF 255

Homo sapiens (taxid: 9606)

>sp|Q8BJ51|MFS11_MOUSE UNC93-like protein MFSD11 OS=Mus musculus GN=Mfsd11 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 115/256 (44%), Gaps = 27/256 (10%)

Query: 29  DVHILSCAFLLIFLAYGAAQNLETTVNTEGNL------GTISLGILYTSFTCFSLVASLV 82
           ++ IL  AF+ +F A+    N+  TV    N       G  SL I+Y  F+  +L+   V
Sbjct: 10  NIVILGVAFMFMFTAFQTCGNVAQTVIRSLNSTDFHGSGYTSLAIIYGVFSASNLITPSV 69

Query: 83  VRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142
           V ++G + ++ +    Y +++A  + P  ++   AS+++G AA+++W  +G  LT  +  
Sbjct: 70  VAIVGPQISMFVSGLFYSMYIAVFIQPFPWSFYTASVFIGIAAAVLWTAQGNCLTINSDE 129

Query: 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGV 202
           H           IG  +G FW +  S  F GNL      +     S      +FI    +
Sbjct: 130 HT----------IGRNSGIFWALLQSSLFFGNLYIYFAWQGKTQISEHDRRTVFIALTVI 179

Query: 203 ITLGTILMCFLRKEEDK---GEKETAD--------ASVNFYSYLVSLSKSITTLLADVRM 251
             +GT+L   +RK + +   GE+E+ D        ++ N  +  V   K    L     M
Sbjct: 180 SLVGTVLFFLIRKPDPENVLGEEESCDDQDMEATESAQNNVTKAVDAFKKSLRLCVTREM 239

Query: 252 LLIIPLFAYSGLQQAF 267
           LL+    AY+GL+  F
Sbjct: 240 LLLSVTTAYTGLELTF 255

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
359481565	444	PREDICTED: UNC93-like protein-like [Viti	0.917	0.673	0.765	1e-129
255581050	439	conserved hypothetical protein [Ricinus	0.917	0.681	0.745	1e-123
297833712	437	hypothetical protein ARALYDRAFT_317751 [	0.901	0.672	0.726	1e-115
224087399	442	predicted protein [Populus trichocarpa]	0.917	0.676	0.732	1e-114
51971130	437	unnamed protein product [Arabidopsis tha	0.904	0.675	0.715	1e-113
30680880	437	UNC93-like protein [Arabidopsis thaliana	0.904	0.675	0.715	1e-113
30680871	464	UNC93-like protein [Arabidopsis thaliana	0.904	0.635	0.715	1e-113
449439988	430	PREDICTED: UNC93-like protein 3-like [Cu	0.904	0.686	0.716	1e-112
449530173	430	PREDICTED: UNC93-like protein 3-like [Cu	0.904	0.686	0.716	1e-112
449439994	430	PREDICTED: UNC93-like protein 3-like [Cu	0.904	0.686	0.702	1e-110

>gi|359481565|ref|XP_002273762.2| PREDICTED: UNC93-like protein-like [Vitis vinifera] gi|147782828|emb|CAN76819.1| hypothetical protein VITISV_029718 [Vitis vinifera] gi|297741472|emb|CBI32604.3| unnamed protein product [Vitis vinifera]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/299 (76%), Positives = 262/299 (87%)

Query: 1   MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNL 60
           M+SVDSRDEE+PLV    Q  T +N+TRDVHILSC+FLLIFLAYGA QNLE++VNT+ +L
Sbjct: 1   MDSVDSRDEESPLVVSDSQSKTLQNHTRDVHILSCSFLLIFLAYGATQNLESSVNTDEDL 60

Query: 61  GTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLY 120
           GTI+LGILY SFT FSL+ASLVVR++GSKNALILGTTGYWLF+AANL P W TMVPAS+Y
Sbjct: 61  GTIALGILYLSFTIFSLIASLVVRMMGSKNALILGTTGYWLFMAANLKPRWSTMVPASVY 120

Query: 121 LGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
           LGFAAS+IWVG+GTYLTA A SHA+++ LHEGTVIG+FNGEFWGMFASHQF GNLITLA+
Sbjct: 121 LGFAASVIWVGQGTYLTATARSHANDNNLHEGTVIGNFNGEFWGMFASHQFAGNLITLAL 180

Query: 181 LKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSK 240
           LKD   GS  GTTLLFIVFL  +TLGTILM FLR+ ++KGE+ + + +V FYSY VSLSK
Sbjct: 181 LKDGTKGSAGGTTLLFIVFLCSMTLGTILMWFLRRRDNKGEEGSLEPAVGFYSYAVSLSK 240

Query: 241 SITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299
           S+ T L DVRMLLIIPLF YSGLQQAFVWAEFTK IVTPALGVSGVGG+MAV+GAFDAI
Sbjct: 241 SVITPLFDVRMLLIIPLFVYSGLQQAFVWAEFTKYIVTPALGVSGVGGSMAVFGAFDAI 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581050|ref|XP_002531341.1| conserved hypothetical protein [Ricinus communis] gi|223529063|gb|EEF31048.1| conserved hypothetical protein [Ricinus communis]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 223/299 (74%), Positives = 260/299 (86%)

Query: 1   MESVDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNL 60
           M + D+RDEE PLV D+LQ   P+N+TRD+HILS AFLL+FLAYGAAQNL+TT+NT  +L
Sbjct: 1   MATEDARDEERPLVLDNLQNHAPQNHTRDIHILSSAFLLVFLAYGAAQNLQTTINTVHDL 60

Query: 61  GTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLY 120
           GTISLGILY SFT FS++ASLVVR LGSKNA++LGTTGYWLF+AANL P+WYTMVPASLY
Sbjct: 61  GTISLGILYLSFTFFSVIASLVVRFLGSKNAVVLGTTGYWLFIAANLMPTWYTMVPASLY 120

Query: 121 LGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
           LGFAASIIWVG+GTYLT+ A SHA+++ LHEGTVIG+FNGEFWG+FA HQ VGNLI+LA+
Sbjct: 121 LGFAASIIWVGQGTYLTSTARSHAADYDLHEGTVIGNFNGEFWGVFACHQLVGNLISLAI 180

Query: 181 LKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSK 240
           L+D  GG+TSGTTLLF VFL ++TLG ILMCFL K   KGE+   D+SV+ YS L+S SK
Sbjct: 181 LRDGTGGTTSGTTLLFFVFLCIVTLGIILMCFLSKRVPKGEEGREDSSVSLYSSLISKSK 240

Query: 241 SITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299
           S+   L D+RMLLIIPL AYSGLQQAFVWAEFTK+IVTPALGVSGVGG+MAVYGAFDAI
Sbjct: 241 SVIAPLLDIRMLLIIPLIAYSGLQQAFVWAEFTKDIVTPALGVSGVGGSMAVYGAFDAI 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833712|ref|XP_002884738.1| hypothetical protein ARALYDRAFT_317751 [Arabidopsis lyrata subsp. lyrata] gi|297330578|gb|EFH60997.1| hypothetical protein ARALYDRAFT_317751 [Arabidopsis lyrata subsp. lyrata]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/300 (72%), Positives = 246/300 (82%), Gaps = 6/300 (2%)

Query: 4   VDSR-DEEAPLVA---DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGN 59
           +DSR DEEAPLV+   +  +    K+YTRDVHILS +FLLIFLAYGAAQNLETTVN +  
Sbjct: 1   MDSRNDEEAPLVSASGEDRKFRAGKSYTRDVHILSISFLLIFLAYGAAQNLETTVNKD-- 58

Query: 60  LGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASL 119
           LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPASL
Sbjct: 59  LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPASL 118

Query: 120 YLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179
           YLGFAASIIWVG+GTYLT+ A SHA +H LHEG+VIG FNGEFW MFA HQ  GNLITLA
Sbjct: 119 YLGFAASIIWVGQGTYLTSIARSHAKDHGLHEGSVIGVFNGEFWAMFACHQLFGNLITLA 178

Query: 180 VLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLS 239
           +LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  KE   + V     LVSL 
Sbjct: 179 LLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKEPVGSPVGLVDSLVSLP 238

Query: 240 KSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299
           + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA DA+
Sbjct: 239 RMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALDAV 298

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087399|ref|XP_002308151.1| predicted protein [Populus trichocarpa] gi|222854127|gb|EEE91674.1| predicted protein [Populus trichocarpa]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/303 (73%), Positives = 257/303 (84%), Gaps = 4/303 (1%)

Query: 1   MESVDS-RDEEAPLVADSLQV---LTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNT 56
           M S+D+ RDEE P VA +  V    T +N+T+DVHILS AFLLIFLAYGAAQNLETT+NT
Sbjct: 1   MASMDNNRDEEEPFVAAAASVDNSETLRNHTKDVHILSSAFLLIFLAYGAAQNLETTLNT 60

Query: 57  EGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVP 116
           + ++GTISLGILY SFT FSL+AS VVR +GSKNA++LGT+GYWLF+AANL P+WYTMVP
Sbjct: 61  KDDMGTISLGILYVSFTFFSLIASSVVRFMGSKNAVLLGTSGYWLFIAANLKPTWYTMVP 120

Query: 117 ASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI 176
           ASLYLGFAASIIWVG+GTYLT+ A S A ++ LHEGTVIG+FNGEFWGMFASHQFVGNLI
Sbjct: 121 ASLYLGFAASIIWVGQGTYLTSTARSQARDYHLHEGTVIGNFNGEFWGMFASHQFVGNLI 180

Query: 177 TLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLV 236
           +LA+L++   GSTSGTTLLF VFL  +TLGTIL+CFL K  D GE+   D+SV+ YS L 
Sbjct: 181 SLAILRNGTEGSTSGTTLLFTVFLCSMTLGTILVCFLSKRVDGGEEGPKDSSVSLYSSLT 240

Query: 237 SLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAF 296
           SLSKS+ T L DVRMLLIIPL AYSGLQQAFVWAEFT++I TPALGVSGVGG+MAVYGAF
Sbjct: 241 SLSKSVITPLLDVRMLLIIPLIAYSGLQQAFVWAEFTEKIATPALGVSGVGGSMAVYGAF 300

Query: 297 DAI 299
           D I
Sbjct: 301 DTI 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971130|dbj|BAD44257.1| unnamed protein product [Arabidopsis thaliana] gi|51971419|dbj|BAD44374.1| unnamed protein product [Arabidopsis thaliana]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/302 (71%), Positives = 244/302 (80%), Gaps = 7/302 (2%)

Query: 1   MESVDSRDEEAPLVA---DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE 57
           MES    DEEAPL++   +  +V   K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1   MES--RNDEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD 58

Query: 58  GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPA 117
             LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPA
Sbjct: 59  --LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPA 116

Query: 118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177
           SLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  GNLIT
Sbjct: 117 SLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLIT 176

Query: 178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVS 237
           LA+LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V     L S
Sbjct: 177 LALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVDSLAS 236

Query: 238 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFD 297
           L + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA D
Sbjct: 237 LPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALD 296

Query: 298 AI 299
           A+
Sbjct: 297 AV 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680880|ref|NP_850546.1| UNC93-like protein [Arabidopsis thaliana] gi|51971813|dbj|BAD44571.1| unnamed protein product [Arabidopsis thaliana] gi|222423196|dbj|BAH19575.1| AT3G09470 [Arabidopsis thaliana] gi|332641250|gb|AEE74771.1| UNC93-like protein [Arabidopsis thaliana]

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/302 (71%), Positives = 244/302 (80%), Gaps = 7/302 (2%)

Query: 1   MESVDSRDEEAPLVA---DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE 57
           MES    DEEAPL++   +  +V   K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1   MES--RNDEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD 58

Query: 58  GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPA 117
             LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPA
Sbjct: 59  --LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPA 116

Query: 118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177
           SLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  GNLIT
Sbjct: 117 SLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLIT 176

Query: 178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVS 237
           LA+LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V     L S
Sbjct: 177 LALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVDSLAS 236

Query: 238 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFD 297
           L + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA D
Sbjct: 237 LPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALD 296

Query: 298 AI 299
           A+
Sbjct: 297 AV 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680871|ref|NP_187558.2| UNC93-like protein [Arabidopsis thaliana] gi|67462074|sp|Q94AA1.1|UN933_ARATH RecName: Full=UNC93-like protein 3 gi|15146218|gb|AAK83592.1| AT3g09470/F11F8_4 [Arabidopsis thaliana] gi|28460681|gb|AAO43565.1| At3g09470/F11F8_4 [Arabidopsis thaliana] gi|332641249|gb|AEE74770.1| UNC93-like protein [Arabidopsis thaliana]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/302 (71%), Positives = 245/302 (81%), Gaps = 7/302 (2%)

Query: 1   MESVDSRDEEAPLVA---DSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE 57
           MES +  DEEAPL++   +  +V   K YTRDVHILS +FLLIFLAYGAAQNLETTVN +
Sbjct: 1   MESRN--DEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD 58

Query: 58  GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPA 117
             LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPA
Sbjct: 59  --LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPA 116

Query: 118 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT 177
           SLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  GNLIT
Sbjct: 117 SLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLIT 176

Query: 178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVS 237
           LA+LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V     L S
Sbjct: 177 LALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVDSLAS 236

Query: 238 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFD 297
           L + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA D
Sbjct: 237 LPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALD 296

Query: 298 AI 299
           A+
Sbjct: 297 AV 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439988|ref|XP_004137767.1| PREDICTED: UNC93-like protein 3-like [Cucumis sativus]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/296 (71%), Positives = 252/296 (85%), Gaps = 1/296 (0%)

Query: 4   VDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI 63
           +DS DEEA L+ ++  +  P NYTRDVH+LS AFLLIFLAYGAAQNLE+TVNTE +LGT 
Sbjct: 1   MDSVDEEARLLVNNAPISAPVNYTRDVHVLSFAFLLIFLAYGAAQNLESTVNTEEDLGTT 60

Query: 64  SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGF 123
           SLGILY SFT FSLVASLVVR LG+KNALILGTTGYWLF AANL P+W+TMVPASLYLGF
Sbjct: 61  SLGILYLSFTFFSLVASLVVRALGTKNALILGTTGYWLFTAANLKPTWFTMVPASLYLGF 120

Query: 124 AASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183
           AASIIWV +GTYLT+ A +HA  + LHEGTVIG+FNGEFWG+FASHQ +GN+I+L VLKD
Sbjct: 121 AASIIWVAQGTYLTSTARNHARKNGLHEGTVIGNFNGEFWGVFASHQVIGNIISLVVLKD 180

Query: 184 DKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSIT 243
           + GGST+GTT+LFI+FL V+TLG +LM FLRKE+ K E+E +  S + +S ++SLSKS+ 
Sbjct: 181 EAGGSTNGTTVLFIIFLCVVTLGIVLMWFLRKEDSK-EEEPSLPSASLHSSILSLSKSVV 239

Query: 244 TLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299
             LAD RM+L IPL AYSGLQ AFVWA+FTK++VTP+LGVSGVGGAMAVYGA DA+
Sbjct: 240 APLADRRMILTIPLIAYSGLQAAFVWAKFTKQVVTPSLGVSGVGGAMAVYGAADAV 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530173|ref|XP_004172070.1| PREDICTED: UNC93-like protein 3-like [Cucumis sativus]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/296 (71%), Positives = 252/296 (85%), Gaps = 1/296 (0%)

Query: 4   VDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI 63
           +DS DEEA L+ ++  +  P NYTRDVH+LS AFLLIFLAYGAAQNLE+TVNTE +LGT 
Sbjct: 1   MDSVDEEARLLVNNAPISAPVNYTRDVHVLSFAFLLIFLAYGAAQNLESTVNTEEDLGTT 60

Query: 64  SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGF 123
           SLGILY SFT FSLVASLVVR LG+KNALILGTTGYWLF AANL P+W+TMVPASLYLGF
Sbjct: 61  SLGILYLSFTFFSLVASLVVRALGTKNALILGTTGYWLFTAANLKPTWFTMVPASLYLGF 120

Query: 124 AASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183
           AASIIWV +GTYLT+ A +HA  + LHEGTVIG+FNGEFWG+FASHQ +GN+I+L VLKD
Sbjct: 121 AASIIWVAQGTYLTSTARNHARKNGLHEGTVIGNFNGEFWGVFASHQVIGNIISLVVLKD 180

Query: 184 DKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSIT 243
           + GGST+GTT+LFI+FL V+TLG +LM FLRKE+ K E+E +  S + +S ++SLSKS+ 
Sbjct: 181 EAGGSTNGTTVLFIIFLCVVTLGIVLMWFLRKEDSK-EEEPSLPSASLHSSILSLSKSVV 239

Query: 244 TLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299
             LAD RM+L IPL AYSGLQ AFVWA+FTK++VTP+LGVSGVGGAMAVYGA DA+
Sbjct: 240 APLADRRMILTIPLIAYSGLQAAFVWAKFTKQVVTPSLGVSGVGGAMAVYGAADAV 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439994|ref|XP_004137770.1| PREDICTED: UNC93-like protein 3-like [Cucumis sativus]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/296 (70%), Positives = 250/296 (84%), Gaps = 1/296 (0%)

Query: 4   VDSRDEEAPLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI 63
           +DS DEEA L+ ++  +  P NYTRDVH+LS AFLLIFLAYGAAQNLE+TVNTE +LGT 
Sbjct: 1   MDSVDEEARLLVNNAPISAPVNYTRDVHVLSFAFLLIFLAYGAAQNLESTVNTEEDLGTT 60

Query: 64  SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGF 123
           SLGILY SFT FSLVA+LVVR LG+KNALILGTTGYWLF AANL P+W+TMVP+S+YLGF
Sbjct: 61  SLGILYLSFTFFSLVAALVVRALGTKNALILGTTGYWLFTAANLKPTWFTMVPSSVYLGF 120

Query: 124 AASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD 183
           AASIIWV +GTYLT+ A +HA  + LHEGTVIG+FNGEFW +FASHQ +GN+I+L VLKD
Sbjct: 121 AASIIWVAQGTYLTSTARNHARKNGLHEGTVIGNFNGEFWAVFASHQVIGNIISLVVLKD 180

Query: 184 DKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSIT 243
           + GGST+GTT+LFI+FL V+TLG +LM FLRK ED  E+E + +S +  S + SLSKS+ 
Sbjct: 181 EAGGSTNGTTVLFIIFLCVVTLGIVLMWFLRK-EDSKEEEPSLSSSSLRSSIFSLSKSVV 239

Query: 244 TLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299
             LAD+RM+L IPL +YSGLQ AFVWA+FTKE+VTP+LGVSGVGGAMAVYGA DA+
Sbjct: 240 APLADIRMILTIPLISYSGLQAAFVWAKFTKEVVTPSLGVSGVGGAMAVYGAADAV 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
TAIR|locus:2074929	464	AT3G09470 "AT3G09470" [Arabido	0.932	0.655	0.703	2.5e-106
UNIPROTKB|Q86WB7	457	UNC93A "Protein unc-93 homolog	0.469	0.334	0.357	1.1e-34
FB|FBgn0027556	538	CG4928 [Drosophila melanogaste	0.509	0.308	0.333	7.7e-31
WB|WBGene00006822	705	unc-93 [Caenorhabditis elegans	0.441	0.204	0.394	1.7e-29
UNIPROTKB|Q93380	705	unc-93 "Putative potassium cha	0.441	0.204	0.394	1.7e-29
MGI|MGI:1933250	458	Unc93a "unc-93 homolog A (C. e	0.466	0.331	0.341	1.2e-28
UNIPROTKB|A2VE54	457	UNC93A "Protein unc-93 homolog	0.469	0.334	0.344	2.9e-28
UNIPROTKB|E2QT36	456	UNC93A "Uncharacterized protei	0.469	0.335	0.324	3.8e-28
ZFIN|ZDB-GENE-041014-304	467	unc93a "unc-93 homolog A (C. e	0.487	0.340	0.293	2.5e-27
DICTYBASE|DDB_G0291720	425	DDB_G0291720 [Dictyostelium di	0.858	0.658	0.299	7.1e-25

TAIR|locus:2074929 AT3G09470 "AT3G09470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 218/310 (70%), Positives = 248/310 (80%)

Query:     4 VDSR-DEEAPLVADS---LQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGN 59
             ++SR DEEAPL++ S    +V   K YTRDVHILS +FLLIFLAYGAAQNLETTVN +  
Sbjct:     1 MESRNDEEAPLISASGEDRKVRAGKCYTRDVHILSISFLLIFLAYGAAQNLETTVNKD-- 58

Query:    60 LGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASL 119
             LGTISLGILY SF   S+VASLVVR++GSKNAL+LGTTGYWLFVAANL PSW+TMVPASL
Sbjct:    59 LGTISLGILYVSFMFCSMVASLVVRLMGSKNALVLGTTGYWLFVAANLKPSWFTMVPASL 118

Query:   120 YLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA 179
             YLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  GNLITLA
Sbjct:   119 YLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFGNLITLA 178

Query:   180 VLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLS 239
             +LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V     L SL 
Sbjct:   179 LLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVDSLASLP 238

Query:   240 KSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAI 299
             + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVYGA DA+
Sbjct:   239 RMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVYGALDAV 298

Query:   300 SLLGFATFFS 309
               +    F S
Sbjct:   299 CSMTAGRFTS 308

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q86WB7 UNC93A "Protein unc-93 homolog A" [Homo sapiens (taxid:9606)]

 Score = 252 (93.8 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
 Identities = 55/154 (35%), Positives = 84/154 (54%)

Query:    28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
             R+V ++S  FLL+F AYG  Q+L++++ +E  LG  +L  LY      S+ +  L++  L
Sbjct:     6 RNVLVVSFGFLLLFTAYGGLQSLQSSLYSEEGLGVTALSTLYGGMLLSSMFLPPLLIERL 65

Query:    87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
             G K  +IL   GY  F   N F SWYT++P S+ LG  A+ +W  + TYLT    +HA  
Sbjct:    66 GCKGTIILSMCGYVAFSVGNFFASWYTLIPTSILLGLGAAPLWSAQCTYLTITGNTHAEK 125

Query:   147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
                    ++  + G F+ +F S    GNLI+  V
Sbjct:   126 AGKRGKDMVNQYFGIFFLIFQSSGVWGNLISSLV 159

GO:0005886 "plasma membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0027556 CG4928 [Drosophila melanogaster (taxid:7227)]

 Score = 244 (91.0 bits), Expect = 7.7e-31, Sum P(2) = 7.7e-31
 Identities = 57/171 (33%), Positives = 95/171 (55%)

Query:    28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSF--TCFSLVASLVVRV 85
             +++ I+S AF++ F A+    NL++++N +  LGT+SL  +Y +   +C  L  +L++R 
Sbjct:    44 KNISIISIAFMVQFTAFQGTANLQSSINAKDGLGTVSLSAIYAALVVSCIFL-PTLIIRK 102

Query:    86 LGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145
             L  K  L+     Y  ++A  LFP +YT+VPA + +G  A+ +W  + TYLT     +A 
Sbjct:   103 LTVKWTLVCSMLCYAPYIAFQLFPRFYTLVPAGILVGMGAAPMWASKATYLTQVGQVYAK 162

Query:   146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--GGSTSGTTL 194
               +     +I  F G F+  + S +  GNLI+  VL      GGS+S TT+
Sbjct:   163 ITEQAVDAIIVRFFGFFFLAWQSAELWGNLISSLVLSSGAHGGGSSSNTTV 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

WB|WBGene00006822 unc-93 [Caenorhabditis elegans (taxid:6239)]

 Score = 248 (92.4 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
 Identities = 58/147 (39%), Positives = 88/147 (59%)

Query:    32 ILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVLGSKN 90
             ILS AFL +F A+   QNL+T+VN  G+LG+ SL  LY S    SL V S ++  LG K 
Sbjct:   252 ILSVAFLFLFTAFNGLQNLQTSVN--GDLGSDSLVALYLSLAISSLFVPSFMINRLGCKL 309

Query:    91 ALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH 150
               ++    Y+L++  NL P++ +M+PAS++ G AAS IW  +  Y+T   + +AS +   
Sbjct:   310 TFLIAIFVYFLYIVINLRPTYSSMIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFES 369

Query:   151 EGTVIGSFNGEFWGMFASHQFVGNLIT 177
             + TVI  F G F+ +    Q VGN+++
Sbjct:   370 QTTVIVRFFGYFFMIVHCGQVVGNMVS 396

GO:0016021 "integral to membrane" evidence=IEA

GO:0016477 "cell migration" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0055120 "striated muscle dense body" evidence=IDA

UNIPROTKB|Q93380 unc-93 "Putative potassium channel regulatory protein unc-93" [Caenorhabditis elegans (taxid:6239)]

 Score = 248 (92.4 bits), Expect = 1.7e-29, Sum P(2) = 1.7e-29
 Identities = 58/147 (39%), Positives = 88/147 (59%)

Query:    32 ILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVLGSKN 90
             ILS AFL +F A+   QNL+T+VN  G+LG+ SL  LY S    SL V S ++  LG K 
Sbjct:   252 ILSVAFLFLFTAFNGLQNLQTSVN--GDLGSDSLVALYLSLAISSLFVPSFMINRLGCKL 309

Query:    91 ALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH 150
               ++    Y+L++  NL P++ +M+PAS++ G AAS IW  +  Y+T   + +AS +   
Sbjct:   310 TFLIAIFVYFLYIVINLRPTYSSMIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFES 369

Query:   151 EGTVIGSFNGEFWGMFASHQFVGNLIT 177
             + TVI  F G F+ +    Q VGN+++
Sbjct:   370 QTTVIVRFFGYFFMIVHCGQVVGNMVS 396

GO:0015459 "potassium channel regulator activity" evidence=IGI

GO:0043266 "regulation of potassium ion transport" evidence=IGI

GO:0006937 "regulation of muscle contraction" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=NAS

MGI|MGI:1933250 Unc93a "unc-93 homolog A (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 234 (87.4 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
 Identities = 53/155 (34%), Positives = 86/155 (55%)

Query:    28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
             ++V ++SC FLL+F AYG  QNL++++ +E  LG  +L  LY S    S+ +  ++++  
Sbjct:     6 KNVLVVSCGFLLLFTAYGGLQNLQSSLYSEQGLGVATLSTLYASVLLSSMFLPPILIKKC 65

Query:    87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
             G K  ++     Y +F   N   +WYT++P S+ LG  A+ +W  +GTYLT      A  
Sbjct:    66 GCKWTIVGSMCCYVVFSLGNFHANWYTLIPTSILLGLGAAPLWSAQGTYLTTMGNLQAEK 125

Query:   147 -HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
               KL +  V+  + G F+ +F S    GNLI+  V
Sbjct:   126 VGKLGKD-VVNQYFGIFFLVFQSSGVWGNLISSLV 159

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A2VE54 UNC93A "Protein unc-93 homolog A" [Bos taurus (taxid:9913)]

 Score = 232 (86.7 bits), Expect = 2.9e-28, Sum P(2) = 2.9e-28
 Identities = 53/154 (34%), Positives = 83/154 (53%)

Query:    28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
             ++V +LS  FLL+F AYG  Q+L++++ +E  LG  +L  LY      S+ +  +++  L
Sbjct:     6 KNVLVLSFGFLLLFTAYGGLQSLQSSLYSEEGLGVAALSTLYGGMLLSSMFLPPVLIGKL 65

Query:    87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
             G K  L+L    Y  F   N + SWYT++PAS+ +G  A+ +W  +GTYLT      A  
Sbjct:    66 GCKWTLVLAMCCYVAFSLGNFYASWYTLIPASVLVGLGAAALWSAQGTYLTIVGNMQARK 125

Query:   147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
                    V+  + G F+ +F S    GNLI+  V
Sbjct:   126 TGQVGKDVVSQYFGIFFLIFQSSGVWGNLISSLV 159

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QT36 UNC93A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 220 (82.5 bits), Expect = 3.8e-28, Sum P(2) = 3.8e-28
 Identities = 50/154 (32%), Positives = 82/154 (53%)

Query:    28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRVL 86
             ++V ++S  FLL+F AYG  Q+L++++  E  LG  +L  LY      S+ +  L+++  
Sbjct:     6 KNVLVVSFGFLLLFTAYGGLQSLQSSLYREEGLGVTALSTLYGGVLLSSMFLPPLLIKKF 65

Query:    87 GSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN 146
             G K  +++    Y  F   N + SWYT++P S+ LG  A+ +W  + TYLT    + A N
Sbjct:    66 GCKWTIVVSMCCYVAFSLGNFYASWYTLIPTSILLGLGAAPLWSAQCTYLTIMGNTEAKN 125

Query:   147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV 180
                    V+  + G F+ +F S    GNLI+  V
Sbjct:   126 VGKVGRDVVNQYFGIFFLIFQSSGVWGNLISSLV 159

GO:0005886 "plasma membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-041014-304 unc93a "unc-93 homolog A (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
 Identities = 47/160 (29%), Positives = 85/160 (53%)

Query:    27 TRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSL-VASLVVRV 85
             T++V ++S  FLL+F AYG  Q+L++++N E  +G ISL ++Y +    S+ +  ++++ 
Sbjct:     5 TKNVLVVSFGFLLLFTAYGGLQSLQSSLNAEEGMGVISLSVIYAAIILSSMFLPPIMIKN 64

Query:    86 LGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS 145
             LG K  +++    Y  +   NL P W +++  S  LG   S +W  + TYLT +      
Sbjct:    65 LGCKWTIVVSMGCYVAYSFGNLAPGWASLMSTSAILGMGGSPLWSAKCTYLTISGNRQGQ 124

Query:   146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK 185
              H      +I  + G F+ +F S    GNL++  +   D+
Sbjct:   125 KHNKKGQDLINQYFGIFFFIFQSSGVWGNLMSSLIFGQDQ 164

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

DICTYBASE|DDB_G0291720 DDB_G0291720 [Dictyostelium discoideum (taxid:44689)]

 Score = 284 (105.0 bits), Expect = 7.1e-25, P = 7.1e-25
 Identities = 96/321 (29%), Positives = 162/321 (50%)

Query:     9 EEAPLVADSLQVLTP--KNYTR-DVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISL 65
             E  PL+    Q   P  +N ++ ++ +L  +F ++F A+   Q L+TT+N   NLG+ SL
Sbjct:    12 EVQPLLNSDYQYSKPSFRNRSKYNIIVLGLSFCILFSAFSPTQELQTTINK--NLGSDSL 69

Query:    66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAA 125
              +LY   +  + ++  V+  LG + +LI+GT  Y  ++AAN+  +  T+  AS+ LG   
Sbjct:    70 AVLYAFLSVTNFISPFVILKLGERLSLIVGTLTYSAYIAANIKVTIPTLYGASVLLGIGG 129

Query:   126 SIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK 185
             +I+W  +G+++   +          E T IG+  G F+ +F  +Q +GNL T A++  DK
Sbjct:   130 AILWTAQGSFVIQCST---------EST-IGANTGLFFALFQINQIIGNLGTAALI--DK 177

Query:   186 GGSTSGTTLLFIVFLGVITLGTILMCFLRKE---EDKGE-KETADASVNFYSYLVSLSKS 241
              G  +   +LF++FLGV  L  +    L K     DKG+  E  + +++    L+S    
Sbjct:   178 AGLQN--EVLFLIFLGVSLLSILGFAILGKPVKVNDKGQIVEKENQTMSIRDRLLS---- 231

Query:   242 ITTLLADVR--MLLIIPLFAYSGLQQAFVWAEFT----KEIVTPALGVSG---VGGAMAV 292
              T +L   R   LL+ PL  YSG+ Q+F +  F     KE +   + V G     G+M +
Sbjct:   232 -TIVLFKDRPIQLLVAPLL-YSGISQSFFFGVFPQLLGKEWIGYVMAVFGFCDAAGSMIM 289

Query:   293 YGAFDAIS---LLGFATFFSV 310
                 D      L+ F+T F +
Sbjct:   290 GKLSDIFGRKILVVFSTVFCI 310

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	326
pfam05978	157	pfam05978, UNC-93, Ion channel regulatory protein	5e-15

>gnl|CDD|114686 pfam05978, UNC-93, Ion channel regulatory protein UNC-93

 Score = 71.2 bits (175), Expect = 5e-15
 Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 20/154 (12%)

Query: 33  LSCAFLLIFLAYGAAQNLETTV----------NTEGNLGTISLGILYTSFTCFSLVASLV 82
           L   FL +F A+ +   +  +V                G  SL I+Y  FT   L A  V
Sbjct: 1   LGFGFLFLFTAFDSQGFILESVIHSLHERDPGTISAYAGYYSLAIIYFFFTVSCLFAPSV 60

Query: 83  VRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS 142
           V +L  K A+++G   Y  F    LF + Y +  +S  LG  A+ +W G+G YLT     
Sbjct: 61  VDILTPKWAMVIGALCYASFQLGFLFLNSYYLYFSSALLGVGAAFLWTGQGQYLT----E 116

Query: 143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI 176
           +++         I       W +  S    G + 
Sbjct: 117 NSTRET------IERNTSIQWAIGKSSLIFGGIF 144

This family of proteins is a component of a multi-subunit protein complex which is involved in the coordination of muscle contraction. UNC-93 is most likely an ion channel regulatory protein. Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
KOG3097	390	consensus Predicted membrane protein [Function unk	99.95
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.93
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.92
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.92
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.91
PRK03545	390	putative arabinose transporter; Provisional	99.91
PRK10642	490	proline/glycine betaine transporter; Provisional	99.9
PRK09705	393	cynX putative cyanate transporter; Provisional	99.9
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.9
PRK12307	426	putative sialic acid transporter; Provisional	99.89
KOG2533	495	consensus Permease of the major facilitator superf	99.89
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.89
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.89
PRK11663	434	regulatory protein UhpC; Provisional	99.89
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.89
PLN00028	476	nitrate transmembrane transporter; Provisional	99.89
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.88
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.88
PRK10133	438	L-fucose transporter; Provisional	99.88
PRK09952	438	shikimate transporter; Provisional	99.88
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.88
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.88
PRK10091	382	MFS transport protein AraJ; Provisional	99.88
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.88
TIGR00900	365	2A0121 H+ Antiporter protein.	99.88
TIGR00891	405	2A0112 putative sialic acid transporter.	99.88
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.87
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.87
PRK15075	434	citrate-proton symporter; Provisional	99.87
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.87
PRK03633	381	putative MFS family transporter protein; Provision	99.87
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.86
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.86
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.86
TIGR00893	399	2A0114 d-galactonate transporter.	99.86
PRK09874	408	drug efflux system protein MdtG; Provisional	99.86
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.85
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.85
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.85
PRK03699	394	putative transporter; Provisional	99.85
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.85
TIGR00895	398	2A0115 benzoate transport.	99.84
PRK11010	491	ampG muropeptide transporter; Validated	99.84
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.84
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.84
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.84
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.84
PRK11043	401	putative transporter; Provisional	99.83
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.83
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.83
PRK12382	392	putative transporter; Provisional	99.83
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	99.83
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.82
PRK10504	471	putative transporter; Provisional	99.82
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.82
PRK10054	395	putative transporter; Provisional	99.82
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.82
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.82
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.82
PRK10489	417	enterobactin exporter EntS; Provisional	99.81
PRK03893	496	putative sialic acid transporter; Provisional	99.81
PRK05122	399	major facilitator superfamily transporter; Provisi	99.81
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.81
TIGR00805	633	oat sodium-independent organic anion transporter.	99.81
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.81
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.8
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.79
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.78
TIGR00898	505	2A0119 cation transport protein.	99.78
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.78
KOG2532	466	consensus Permease of the major facilitator superf	99.78
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.77
KOG0569	485	consensus Permease of the major facilitator superf	99.77
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.77
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.77
TIGR00901	356	2A0125 AmpG-related permease.	99.76
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.75
PRK11902	402	ampG muropeptide transporter; Reviewed	99.75
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.75
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.74
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.74
PRK09528	420	lacY galactoside permease; Reviewed	99.73
KOG0254	513	consensus Predicted transporter (major facilitator	99.73
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.7
PRK15011	393	sugar efflux transporter B; Provisional	99.67
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.67
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.66
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.61
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.59
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.58
KOG2615	451	consensus Permease of the major facilitator superf	99.57
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.56
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.55
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.55
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.54
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.54
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.53
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.53
PTZ00207	591	hypothetical protein; Provisional	99.49
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.44
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.39
KOG2563	480	consensus Permease of the major facilitator superf	99.38
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.37
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.36
PRK09669	444	putative symporter YagG; Provisional	99.36
PRK05122	399	major facilitator superfamily transporter; Provisi	99.34
PRK10429	473	melibiose:sodium symporter; Provisional	99.33
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.33
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.33
PRK15011	393	sugar efflux transporter B; Provisional	99.27
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.25
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.25
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.24
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.24
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.23
PF13347	428	MFS_2: MFS/sugar transport protein	99.23
PRK12382	392	putative transporter; Provisional	99.21
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.18
PRK10642	490	proline/glycine betaine transporter; Provisional	99.17
PRK11462	460	putative transporter; Provisional	99.16
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.16
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.15
PRK09848	448	glucuronide transporter; Provisional	99.1
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.09
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.09
PRK09874	408	drug efflux system protein MdtG; Provisional	99.09
PRK03699	394	putative transporter; Provisional	99.09
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.07
PRK09528	420	lacY galactoside permease; Reviewed	99.04
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.01
PRK10489	417	enterobactin exporter EntS; Provisional	99.0
PRK11010	491	ampG muropeptide transporter; Validated	98.98
COG2211	467	MelB Na+/melibiose symporter and related transport	98.95
TIGR00898	505	2A0119 cation transport protein.	98.95
PRK10504	471	putative transporter; Provisional	98.95
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.95
PRK03633	381	putative MFS family transporter protein; Provision	98.94
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.94
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.93
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.93
PRK09705	393	cynX putative cyanate transporter; Provisional	98.92
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.91
PRK03545	390	putative arabinose transporter; Provisional	98.91
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.9
PRK09952	438	shikimate transporter; Provisional	98.89
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.85
TIGR00895	398	2A0115 benzoate transport.	98.83
TIGR00893	399	2A0114 d-galactonate transporter.	98.83
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.82
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.81
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.81
TIGR00900	365	2A0121 H+ Antiporter protein.	98.78
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.77
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.77
PRK11663	434	regulatory protein UhpC; Provisional	98.76
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.75
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.75
KOG3626	735	consensus Organic anion transporter [Secondary met	98.74
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.72
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.71
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.7
PRK09848	448	glucuronide transporter; Provisional	98.7
TIGR00901	356	2A0125 AmpG-related permease.	98.7
TIGR00891	405	2A0112 putative sialic acid transporter.	98.7
PRK03893	496	putative sialic acid transporter; Provisional	98.69
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.69
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.68
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.67
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.67
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.64
PRK10054	395	putative transporter; Provisional	98.63
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.62
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.62
PF13347	428	MFS_2: MFS/sugar transport protein	98.61
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.59
PRK15075	434	citrate-proton symporter; Provisional	98.59
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.58
PRK12307	426	putative sialic acid transporter; Provisional	98.58
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.58
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.57
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.56
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.55
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.55
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.54
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.53
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.53
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.51
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.51
PRK11902	402	ampG muropeptide transporter; Reviewed	98.49
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.48
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.48
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.47
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.45
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.43
PLN00028	476	nitrate transmembrane transporter; Provisional	98.43
PRK10091	382	MFS transport protein AraJ; Provisional	98.42
PRK09669	444	putative symporter YagG; Provisional	98.41
PRK11043	401	putative transporter; Provisional	98.4
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.34
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.33
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.3
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.29
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.29
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.28
PRK10429	473	melibiose:sodium symporter; Provisional	98.27
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.26
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.25
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.25
KOG3762	618	consensus Predicted transporter [General function	98.25
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.22
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.22
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.21
COG2211	467	MelB Na+/melibiose symporter and related transport	98.19
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.16
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.16
PRK10133	438	L-fucose transporter; Provisional	98.13
COG0477	338	ProP Permeases of the major facilitator superfamil	98.12
PRK11462	460	putative transporter; Provisional	98.09
KOG0569	485	consensus Permease of the major facilitator superf	98.04
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.98
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.97
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.95
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.92
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.9
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.82
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.6
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	97.57
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.57
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.53
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.48
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.44
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	97.38
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.3
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.3
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.22
KOG0254	513	consensus Predicted transporter (major facilitator	97.01
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.0
KOG2532	466	consensus Permease of the major facilitator superf	96.93
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.87
KOG3764	464	consensus Vesicular amine transporter [Intracellul	96.81
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.34
PF12832	77	MFS_1_like: MFS_1 like family	96.22
KOG0637	498	consensus Sucrose transporter and related proteins	96.22
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	96.21
PF12832	77	MFS_1_like: MFS_1 like family	95.72
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	95.55
KOG2533	495	consensus Permease of the major facilitator superf	95.48
PRK03612	521	spermidine synthase; Provisional	95.15
KOG3810	433	consensus Micronutrient transporters (folate trans	94.84
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	94.74
PRK15462	493	dipeptide/tripeptide permease D; Provisional	94.08
KOG2816	463	consensus Predicted transporter ADD1 (major facili	94.0
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	93.89
KOG2615	451	consensus Permease of the major facilitator superf	93.65
PTZ00207	591	hypothetical protein; Provisional	93.13
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	93.11
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	92.88
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	92.61
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	91.5
KOG0637	498	consensus Sucrose transporter and related proteins	91.34
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	90.93
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	90.61
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	90.51
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	89.66
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	89.14
KOG3098	461	consensus Uncharacterized conserved protein [Funct	88.95
COG3202	509	ATP/ADP translocase [Energy production and convers	86.02
KOG2563	480	consensus Permease of the major facilitator superf	84.05
KOG1330	493	consensus Sugar transporter/spinster transmembrane	83.97
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	82.52

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=99.95  E-value=1.2e-26  Score=203.53  Aligned_cols=312  Identities=36%  Similarity=0.487  Sum_probs=244.6

Q ss_pred             CCCCCCCccccccc--cc-cCccccchhHHHHHHHHHHHHHHHHhHHhhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHH
Q 020422            5 DSRDEEAPLVADSL--QV-LTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASL   81 (326)
Q Consensus         5 ~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~   81 (326)
                      +-+++++|..-++.  .+ ...+...||+.+++.++++.|.+|...+++|..++.  +.+..+++..|.....++++.+.
T Consensus         3 ~~~~~~~~~~s~~~~~~~~r~~~~~~knv~i~s~~fl~~f~a~~gl~nlq~~vn~--~lg~~sl~~~y~~l~~s~m~~~~   80 (390)
T KOG3097|consen    3 LVGAYPNYNESEEEERRYRRKRLGILKNVLILSIAFLLTFTAYLGLQNLQTSVNY--DLGTVSLGALYLSLIDSSMFMPL   80 (390)
T ss_pred             ccccccCCCCCCcccchhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--CcccchhhhhhHHHHHHHHHHHH
Confidence            44667777776644  11 233458999999999999999999999999999986  66667788899999999999999


Q ss_pred             HHHHhchhhHHHHHhHHHHHHHHHhhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcC-CCcccchhhHHH
Q 020422           82 VVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK-LHEGTVIGSFNG  160 (326)
Q Consensus        82 l~d~~Grr~~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~-~~~~~~rg~~~g  160 (326)
                      +.+++|.|++++++...|..+.+.++.|.+.+++++.+..|+|.++.|.+.++|++++.++|+.+++ +..+....+..|
T Consensus        81 ~Ir~~g~K~tm~lav~~Y~lyiA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~~~~~~ffg  160 (390)
T KOG3097|consen   81 LIRFLGTKWTMVLAVFPYALYIAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGDGMKVRFFG  160 (390)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccCceeeeehh
Confidence            9999999999999999999999999999999999999999999999999999999999999988773 444444578889


Q ss_pred             HHHHHHHHhHHHHHHHHHHHhc----C---C-C-----C--------C--CCCchhH--------HHHHHHHHHHHHHHH
Q 020422          161 EFWGMFASHQFVGNLITLAVLK----D---D-K-----G--------G--STSGTTL--------LFIVFLGVITLGTIL  209 (326)
Q Consensus       161 i~~~~~~~g~~~G~li~~~l~~----~---~-~-----~--------~--~~~wr~~--------~f~~~~~~~~l~~il  209 (326)
                      .|+.+++.+...|++++..+..    .   . +     .        +  ..+.++.        .=.++..+.+++.++
T Consensus       161 ~Ffii~~~~qv~gn~issli~~~~~~~~~~~sn~t~~~~CG~~f~~~g~~a~~nlt~p~~~~~lvls~i~L~c~via~~~  240 (390)
T KOG3097|consen  161 EFFIIFQCAQVWGNLISSLIMTLFLHGALSGSNLTFSVECGANFCGSGDKAEGNLTLPPSYVILVLSLIFLPCMVIAVLI  240 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceeeeecccccCCccccccCCccCCCCCceEEeeHHHHHHHHHHHHH
Confidence            9999998888888776644321    1   0 0     0        0  0111110        001334444444433


Q ss_pred             HHhccCCcc---ccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccccCcchH
Q 020422          210 MCFLRKEED---KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGV  286 (326)
Q Consensus       210 ~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  286 (326)
                      ..+.-....   +++.        .+.+..+.++-.++.++|+++.++.|...+.|++++|..+.|+..+..|..|.+.+
T Consensus       241 ~~~~~~~l~r~~~~r~--------~~~~~l~i~~l~~~~l~~~r~~llvP~tif~GleqaF~~~~fTk~~V~c~~Gv~~i  312 (390)
T KOG3097|consen  241 MLFFLGALKRYGEKRL--------ASVSGLNIFQLTFKHLRDIRLRLLVPLTIFSGLEQAFLCADFTKAYVACALGVSRI  312 (390)
T ss_pred             HHHHHHHHhhhhhhhh--------hcccccchHHHHHHHhcCcceeeeehhhhhhHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence            333222211   1111        12233455666778999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHhhcCC
Q 020422          287 GGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFHLSLL  326 (326)
Q Consensus       287 g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~~~~~  326 (326)
                      |.++..+++++++.+.+.|.++.+  |.+....|+++|++++
T Consensus       313 gf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li  354 (390)
T KOG3097|consen  313 GFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLI  354 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence            999999999999999999999999  9999999999998753

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.93  E-value=9.5e-24  Score=194.16  Aligned_cols=257  Identities=12%  Similarity=0.068  Sum_probs=187.2

Q ss_pred             ccccchhHHHHHHH-HHHHHHHHHhHH---hhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHH
Q 020422           23 PKNYTRDVHILSCA-FLLIFLAYGAAQ---NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTG   98 (326)
Q Consensus        23 ~~~~~~~~~~l~l~-~~~~~~~~~~~~---~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~   98 (326)
                      .++.++.++.++++ |....+.|...+   .++++++.+....-...+++-.+.++++++...+.||+.||++++....+
T Consensus         8 ~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~l   87 (394)
T COG2814           8 RKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLAL   87 (394)
T ss_pred             cccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence            34566777777777 455566666543   55666665533322335555567889999999999999999999999999


Q ss_pred             HHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHH
Q 020422           99 YWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT  177 (326)
Q Consensus        99 ~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~  177 (326)
                      +.+..... ++|||..++++|++.|+..|.+|+...++.++..          ||++|+++.++...+.+++.++|..++
T Consensus        88 Fi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lv----------pp~~~~~Aiaiv~~G~tlA~v~GvPLG  157 (394)
T COG2814          88 FIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLV----------PPGKRGRALALVFTGLTLATVLGVPLG  157 (394)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CccchhhHHHHHHHHHHHHHHHhccHH
Confidence            98888764 8999999999999999999999999999999987          999999999999999999999999999


Q ss_pred             HHHhcCCCCCCCCchhHHHHHHHHHHHHHHH-HHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHH
Q 020422          178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIP  256 (326)
Q Consensus       178 ~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~i-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  256 (326)
                      .++-+.     .|||.. |++..+++++..+ ++..+| |+..+ ++       ++.+.    ++..+.+|+|+.+....
T Consensus       158 t~ig~~-----~GWR~~-F~~ia~l~ll~~~~~~~~lP-~~~~~-~~-------~~~~~----~~~~~~l~~p~v~~~l~  218 (394)
T COG2814         158 TFLGQL-----FGWRAT-FLAIAVLALLALLLLWKLLP-PSEIS-GS-------LPGPL----RTLLRLLRRPGVLLGLL  218 (394)
T ss_pred             HHHHHH-----hhHHHH-HHHHHHHHHHHHHHHHHhCC-CccCC-CC-------CCcch----hHHHHHhcCchHHHHHH
Confidence            888654     589985 5555566655443 345677 11111 11       11122    23347789999887544


Q ss_pred             HH--HHhhHHHHHhhhccccccc-ccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          257 LF--AYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       257 ~~--~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      ..  .+.|....|  ++..|.+. ..+++.+.+++++..+|++..+|+.++|+++||
T Consensus       219 ~t~l~~~g~F~~f--tYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr  273 (394)
T COG2814         219 ATFLFMTGHFALY--TYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR  273 (394)
T ss_pred             HHHHHHcchhhhH--HhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            32  223332222  12223332 235677789999999999999999999999999

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.92  E-value=7e-24  Score=198.70  Aligned_cols=286  Identities=28%  Similarity=0.399  Sum_probs=220.5

Q ss_pred             ccccchhHHHHHHHHHHHHHHHHhHHhhhhhhc----------CCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHH
Q 020422           23 PKNYTRDVHILSCAFLLIFLAYGAAQNLETTVN----------TEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNAL   92 (326)
Q Consensus        23 ~~~~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~----------~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l   92 (326)
                      .++.++++..++.++++++.++.....+++++.          .+++.|..+.+++|..|+++++++|.+.|+.|+|+.+
T Consensus         4 ~~~~~~~v~~lg~g~~~~f~~~~s~~fi~esvi~sv~~~~~g~i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~l   83 (461)
T KOG3098|consen    4 RRFELLNVLMLGFGFLFLFTAYDSQGFIAESVIHSVHERGPGGISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWAL   83 (461)
T ss_pred             ccchhheeeehhhhHHHHhHhhhhhHHHHHHHHHHHHhcCCCCcCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHH
Confidence            567899999999999999999998877766652          2467888899999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHHhhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHH
Q 020422           93 ILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFV  172 (326)
Q Consensus        93 ~~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~  172 (326)
                      ++|..+|..+..+++.+|-+.++.+.+++|+|.+.+|.+++.|+++++          .+++++++.+++|+.+..+.++
T Consensus        84 v~ga~~y~~f~~gfl~~N~y~~yfssallG~Gaallw~GqG~ylt~~s----------t~~tie~Nisi~Wai~~~~li~  153 (461)
T KOG3098|consen   84 VIGATCYAAFPLGFLFPNSYYLYFSSALLGFGAALLWTGQGGYLTSNS----------TRETIERNISIFWAIGQSSLII  153 (461)
T ss_pred             HHHhHHHHHHHHHHHhcchHHHHHHHHHhhhhHHheecccceehhhcC----------ChhhHHHHHHHHHHHHHHHHHh
Confidence            999999999999998888888889999999999999999999999997          7788999999999999999999


Q ss_pred             HHHHHHHHhcCCC-C--CCCCchhH-------------HHHHHHHHHHHHHHHHHhccCCccccccccccccchhhchHH
Q 020422          173 GNLITLAVLKDDK-G--GSTSGTTL-------------LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLV  236 (326)
Q Consensus       173 G~li~~~l~~~~~-~--~~~~wr~~-------------~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~  236 (326)
                      |+++...+....+ +  ...+.+..             ++.++.....++++...++|.+....+++.     . +.+.+
T Consensus       154 Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~~~~-----~-~~~~~  227 (461)
T KOG3098|consen  154 GGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKDVVNCKSS-----S-ETSFS  227 (461)
T ss_pred             hhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccchhhhhhh-----c-cccHH
Confidence            9988777655432 1  11222211             111111112222222233333222211110     1 13567


Q ss_pred             HHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccccccc-ccCc---chHHHHHHHHHHHHHHHHHHhhhhhhh--
Q 020422          237 SLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP-ALGV---SGVGGAMAVYGAFDAISLLGFATFFSV--  310 (326)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~---~~~g~~~~~~gi~~~~g~~~~G~l~Dr--  310 (326)
                      ++++...+.+++++++.+.|.++++|+..+|+.+.|+..+... ..+.   ...++.+...|+++.++....+.+++|  
T Consensus       228 ~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir  307 (461)
T KOG3098|consen  228 ELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIR  307 (461)
T ss_pred             HHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Confidence            7788888999999999999999999999999988887665321 2222   245777888899999999999999998  


Q ss_pred             ---hhhHHhHHHHHhhc
Q 020422          311 ---HSLLVGLPLVFHLS  324 (326)
Q Consensus       311 ---R~~~~~~g~~~~~~  324 (326)
                         |++.+..+.++|..
T Consensus       308 ~fg~~~~~~~~~~~~~~  324 (461)
T KOG3098|consen  308 GFGRKPTVLIGIIIHLI  324 (461)
T ss_pred             hcccCcchhHHHHHHHH
Confidence               57888888888764

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.92  E-value=7.1e-23  Score=194.01  Aligned_cols=274  Identities=12%  Similarity=0.083  Sum_probs=181.6

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhHHhhhhhhcCCCCchh----HHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHH
Q 020422           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGT----ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (326)
Q Consensus        25 ~~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~g~----~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~  100 (326)
                      ..++..+++.+++.+.+..+...+...+.+.++.+.+.    ...+..+.++++++++.|++.||+|||+++..+.++++
T Consensus         5 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~   84 (412)
T TIGR02332         5 LFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWG   84 (412)
T ss_pred             ehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHH
Confidence            35666777777777767777766655555544443333    23566777889999999999999999999999999988


Q ss_pred             HHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHH
Q 020422          101 LFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA  179 (326)
Q Consensus       101 ~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~  179 (326)
                      +..... +++|++.+++.|+++|++.+..+++...++.+++          |+++||+++|+++.+..+|..+|+++++.
T Consensus        85 ~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~rg~~~~~~~~~~~~g~~~~~~~~~~  154 (412)
T TIGR02332        85 IASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWF----------PAYFRARANALFMIAMPVTMALGLILSGY  154 (412)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877764 7889999999999999999999998888999987          78899999999999999999999999877


Q ss_pred             HhcCCC-CCCCCchhHHHHHHHHHHHH-HHHHHHhccCCccccc---ccccc-c-----------cchhh--chHHHHHH
Q 020422          180 VLKDDK-GGSTSGTTLLFIVFLGVITL-GTILMCFLRKEEDKGE---KETAD-A-----------SVNFY--SYLVSLSK  240 (326)
Q Consensus       180 l~~~~~-~~~~~wr~~~f~~~~~~~~l-~~il~~~l~~~~~~~~---~~~~~-~-----------~~~~~--~~~~~~~~  240 (326)
                      +..... .+..+||+. |.+..+..++ ..+..+++||++++++   +++++ .           +++++  .......+
T Consensus       155 l~~~~~~~~~~gwr~~-f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (412)
T TIGR02332       155 ILALDGLMALKGWQWL-FLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQR  233 (412)
T ss_pred             HHhCCCCCCccchhHH-HHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHH
Confidence            753211 123589974 5454444443 3344567788654321   00000 0           00000  00000011


Q ss_pred             HHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccccccc---ccCcchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          241 SITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP---ALGVSGVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       241 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      ...+.++++.++.....+++......... .+.|.+..+   +.+....+.......++..+|.++.|+++||
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr  305 (412)
T TIGR02332       234 SMLREIFTPAIMLYTLAYFCLTNTLSAIN-IWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDR  305 (412)
T ss_pred             HHHHHhcChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcc
Confidence            22333445666655444333332222222 233444332   2334567888888999999999999999999

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.91  E-value=1.6e-22  Score=192.72  Aligned_cols=231  Identities=10%  Similarity=0.048  Sum_probs=146.4

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhh--------HHHHHHHHHhhhhhHHHHhhhhHHH
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSW--------YTMVPASLYLGFAASIIWVGEGTYL  136 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~--------~~l~~~r~l~G~g~g~~~~~~~~~l  136 (326)
                      +..+.+..+++++.|+++||+|||+++..+.+++++.+... +++++        ..+++.|+++|++.|..++...+++
T Consensus        70 ~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i  149 (432)
T PRK10406         70 AAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYM  149 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHH
Confidence            34444555889999999999999999999999998888764 56665        3588899999999999999999999


Q ss_pred             HHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC---CCCCCchhHHHHHHHHHHHHHHHHHHhc
Q 020422          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLLFIVFLGVITLGTILMCFL  213 (326)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~---~~~~~wr~~~f~~~~~~~~l~~il~~~l  213 (326)
                      +|+.          |+++||++.++...+...|..+++++...+.....   ....+||.. |++..+.+++...+...+
T Consensus       150 ~e~~----------p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~-F~i~~~~~ll~~~~~~~~  218 (432)
T PRK10406        150 SEVA----------VEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIP-FALGAVLAVVALWLRRQL  218 (432)
T ss_pred             HHhC----------CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHH-HHHHHHHHHHHHHHHhcC
Confidence            9997          88999999999888888888877766544432110   013689984 443333333332222334


Q ss_pred             cCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCcchHHHHHH
Q 020422          214 RKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMA  291 (326)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~  291 (326)
                      ||+++.++++      .++   +   ++..+.+|+++.+..............+....+.|.+..  .+.+.++.+....
T Consensus       219 ~e~~~~~~~~------~~~---~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~  286 (432)
T PRK10406        219 DETSQQETRA------LKE---A---GSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMT  286 (432)
T ss_pred             CCCchHHHhh------hcc---c---ccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            4433211100      000   0   112244566766654433222211111111223344332  2445556777777


Q ss_pred             HHHHHHHHHHHHhhhhhhh--hhhHHhHHH
Q 020422          292 VYGAFDAISLLGFATFFSV--HSLLVGLPL  319 (326)
Q Consensus       292 ~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~  319 (326)
                      ...++..++..+.|+++||  ||+.++.+.
T Consensus       287 i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~  316 (432)
T PRK10406        287 AALFVFMLIQPLIGALSDKIGRRTSMLCFG  316 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence            7777888889999999999  665544443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.91  E-value=3.2e-22  Score=187.94  Aligned_cols=220  Identities=13%  Similarity=0.050  Sum_probs=154.6

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        64 ~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      ..+.....+++++++.|+++||+|||+++..+.+++++.++.. +++|++.+++.|+++|++.+..++...+++.++.  
T Consensus        49 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~--  126 (390)
T PRK03545         49 MLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVA--  126 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence            3455566778889999999999999999999998888877664 7899999999999999999999998888888886  


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHH-HHhccCCccccc
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKGE  221 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il-~~~l~~~~~~~~  221 (326)
                              |+++|++++|++..+.++|..+|+.++..+.+.     .+||+. |++..++.++..++ ...+||+++++ 
T Consensus       127 --------~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~-----~gw~~~-f~~~~~~~~l~~~~~~~~~~~~~~~~-  191 (390)
T PRK03545        127 --------PAGKKAQALSLLATGTALAMVLGLPLGRVIGQY-----LGWRTT-FLAIGGGALITLLLLIKLLPLLPSEH-  191 (390)
T ss_pred             --------ChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH-----hcHHHH-HHHHHHHHHHHHHHHHHhCCCCCCCC-
Confidence                    889999999999999999999999998776543     479874 55555555444333 33455532211 


Q ss_pred             cccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc-cccCcchHHHHHHHHHHHHHHH
Q 020422          222 KETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAIS  300 (326)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~gi~~~~g  300 (326)
                       +         .+    .++..+.+|+|+++......+..........+..++.+.+ .+.+.+..+..+...++++.++
T Consensus       192 -~---------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g  257 (390)
T PRK03545        192 -S---------GS----LKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIG  257 (390)
T ss_pred             -c---------ch----HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH
Confidence             1         01    1223356778877654332222111111111222232322 2455667888888899999999


Q ss_pred             HHHhhhhhhh--hhhH
Q 020422          301 LLGFATFFSV--HSLL  314 (326)
Q Consensus       301 ~~~~G~l~Dr--R~~~  314 (326)
                      +.+.|+++||  ||.+
T Consensus       258 ~~~~g~l~dr~~~~~~  273 (390)
T PRK03545        258 SVLFSRLGNRHPSGFL  273 (390)
T ss_pred             HHHHHHHhhccchhHH
Confidence            9999999999  5543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.90  E-value=8.5e-22  Score=190.68  Aligned_cols=276  Identities=11%  Similarity=0.023  Sum_probs=167.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHhh----hhhhcCCCCc--h---hHH-HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHh
Q 020422           27 TRDVHILSCAFLLIFLAYGAAQNL----ETTVNTEGNL--G---TIS-LGILYTSFTCFSLVASLVVRVLGSKNALILGT   96 (326)
Q Consensus        27 ~~~~~~l~l~~~~~~~~~~~~~~l----~~~l~~~~~~--g---~~~-~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~   96 (326)
                      +|-++...++.++-+..+...+..    .+.+..+.+.  .   ... .++.++++++++++.|+++||+|||+++.++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            444555556666655455444333    3333322211  1   111 36667788999999999999999999999999


Q ss_pred             HHHHHHHHHh-hhhhhHH--------HHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHH
Q 020422           97 TGYWLFVAAN-LFPSWYT--------MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFA  167 (326)
Q Consensus        97 ~~~~~~~~~~-~~~~~~~--------l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~  167 (326)
                      ++++++++.+ ++||+..        ++++|+++|++.|..+++..++++|++          |+++||+..++...+..
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~----------p~~~Rg~~~~~~~~~~~  164 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYS----------PDRKRGFMGSWLDFGSI  164 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhC----------CCCCCcHHHHHHHHHHH
Confidence            9999988865 7888764        788999999999999999999999997          88999999999988888


Q ss_pred             HhHHHHHHHHHHHhcCCC---CCCCCchhHHHHHHHHHHHHHHHHHHhccCCcccccc-cc-cc--cc---chhhchHHH
Q 020422          168 SHQFVGNLITLAVLKDDK---GGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEK-ET-AD--AS---VNFYSYLVS  237 (326)
Q Consensus       168 ~g~~~G~li~~~l~~~~~---~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~-~~-~~--~~---~~~~~~~~~  237 (326)
                      +|..+|+.+...+.....   ....+||+. |++....++++.++...+||+++..+. +. ++  .+   +.++.++  
T Consensus       165 ~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~-f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~--  241 (490)
T PRK10642        165 AGFVLGAGVVVLISTIVGEANFLDWGWRIP-FFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSF--  241 (490)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHhcCccHHHH-HHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCH--
Confidence            888888776544432110   113689984 444444444444444567776432110 00 00  00   0001112  


Q ss_pred             HHHHHHHhhhcchhHHHH-HHHHHhhHHHHHhhhccccccccc--ccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hh
Q 020422          238 LSKSITTLLADVRMLLII-PLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HS  312 (326)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~  312 (326)
                        ++..+  ++++.+... ...+.......... .+.|.+..+  +.+.+..++......++..++.++.|+++||  ||
T Consensus       242 --~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr  316 (490)
T PRK10642        242 --KEIAT--KHWRSLLTCIGLVIATNVTYYMLL-TYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR  316 (490)
T ss_pred             --HHHHH--HhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence              22111  122222222 11111111111111 234444322  3444455666677778888999999999999  77


Q ss_pred             hHHhHHHH
Q 020422          313 LLVGLPLV  320 (326)
Q Consensus       313 ~~~~~g~~  320 (326)
                      +.++.+.+
T Consensus       317 ~~~~~~~~  324 (490)
T PRK10642        317 PFVILGSV  324 (490)
T ss_pred             HHHHHHHH
Confidence            76666553

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.90  E-value=5.6e-22  Score=186.70  Aligned_cols=243  Identities=11%  Similarity=0.032  Sum_probs=162.5

Q ss_pred             hhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHH
Q 020422           49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASI  127 (326)
Q Consensus        49 ~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~  127 (326)
                      .++++++.+..+.....+..+.++++++++.|++.||+|||+++..+..++++..+.. ++++++.++++|+++|++.+.
T Consensus        34 ~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~  113 (393)
T PRK09705         34 QLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGI  113 (393)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHH
Confidence            4455555444444445677778889999999999999999999999999999888765 889999999999999999999


Q ss_pred             HHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHH
Q 020422          128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT  207 (326)
Q Consensus       128 ~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~  207 (326)
                      .++....++.++.           +++|++++|++..+...|..+|+.++..+....    .+||...+ .+....++..
T Consensus       114 ~~~~~~~~~~~~~-----------~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~----~~w~~~~~-~~~~~~~~~~  177 (393)
T PRK09705        114 IQAVMPSVIKRRF-----------QQRTPLVMGLWSAALMGGGGLGAAITPWLVQHS----ETWYQTLA-WWALPAVVAL  177 (393)
T ss_pred             HhhhhhHHHHHHc-----------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHH-HHHHHHHHHH
Confidence            9888877777663           478999999999999999999998887765432    36887432 2333333332


Q ss_pred             HHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccccCcchHH
Q 020422          208 ILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVG  287 (326)
Q Consensus       208 il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  287 (326)
                      +..+...+++++++++       ++.+       ..+.+++++.+.+.....+..........+.++.+.+.+.+.++.+
T Consensus       178 ~~~~~~~~~~~~~~~~-------~~~~-------~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag  243 (393)
T PRK09705        178 FAWWWQSAREVASSHK-------TTTT-------PVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSG  243 (393)
T ss_pred             HHHHHHhcCCCccccC-------CCcC-------CcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhh
Confidence            2222222211111110       0001       0133456666654443333322222222223333333455666788


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHH
Q 020422          288 GAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVF  321 (326)
Q Consensus       288 ~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~  321 (326)
                      .....++++..+|+++.|++.||  ||+.++.+..+
T Consensus       244 ~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l  279 (393)
T PRK09705        244 SLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVL  279 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence            99999999999999999999999  66655555433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.90  E-value=3.4e-21  Score=181.50  Aligned_cols=220  Identities=11%  Similarity=0.017  Sum_probs=154.6

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        64 ~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      ..+.......+++++.|++.||+|||+++..+.++.++..... +.++++.+++.|+++|++.+..++...+++.++.  
T Consensus        60 ~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~--  137 (394)
T PRK10213         60 SVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLV--  137 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc--
Confidence            3455566778889999999999999999999999888766654 6789999999999999999999999888888886  


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHH-HhccCCccccc
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGE  221 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~-~~l~~~~~~~~  221 (326)
                              |+++|+++.++++.+.++|..+|++++..+.+.     .+||+. |.+..++.++..+.. ..+||+++++ 
T Consensus       138 --------~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~-----~gw~~~-f~~~~~l~~~~~l~~~~~~p~~~~~~-  202 (394)
T PRK10213        138 --------PPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL-----IGWRNV-FNAAAVMGVLCIFWIIKSLPSLPGEP-  202 (394)
T ss_pred             --------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCHHHH-HHHHHHHHHHHHHHHHHHCCCCCccc-
Confidence                    889999999999999999999999999888653     479874 444444333322222 2345432111 


Q ss_pred             cccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccccc-ccccCcchHHHHHHHHHHHHHHH
Q 020422          222 KETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAIS  300 (326)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~gi~~~~g  300 (326)
                       +      ++.       ++.++.+|+|+++......+............++|.+. ..+.+.+..+..+..++++..++
T Consensus       203 -~------~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig  268 (394)
T PRK10213        203 -S------HQK-------QNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVG  268 (394)
T ss_pred             -c------cch-------hHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence             0      000       11235677888876543322222111111222334333 23556667889899999999999


Q ss_pred             HHHhhhhhhh-hhhH
Q 020422          301 LLGFATFFSV-HSLL  314 (326)
Q Consensus       301 ~~~~G~l~Dr-R~~~  314 (326)
                      +.+.|++.|| +|+.
T Consensus       269 ~~~~~~l~~r~~~~~  283 (394)
T PRK10213        269 TSLSSFILKRSVKLA  283 (394)
T ss_pred             HHHHHHHHhccchhH
Confidence            9999999999 5444

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.89  E-value=2.3e-21  Score=183.93  Aligned_cols=280  Identities=9%  Similarity=0.036  Sum_probs=169.7

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHhhh----hhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHH
Q 020422           27 TRDVHILSCAFLLIFLAYGAAQNLE----TTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (326)
Q Consensus        27 ~~~~~~l~l~~~~~~~~~~~~~~l~----~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~  102 (326)
                      +++...+.++++.....+.....+.    ++++.+........+...+.+.+++++.|+++||+|||+++..+.+.+++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~   96 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVG   96 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            3445555555544444443333333    344433333333456666778889999999999999999999999988887


Q ss_pred             HHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422          103 VAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (326)
Q Consensus       103 ~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~  181 (326)
                      .... ++++++.++++|++.|++.+..++....++.|+.          |+++|+++.+++..+..+|..+++.+...+.
T Consensus        97 ~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~  166 (426)
T PRK12307         97 TGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESW----------PKHLKSKASAFLVSGFGIGNIIAAYFMPSFA  166 (426)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhC----------CHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence            7654 7889999999999999999999998888999986          8889999999999999999999887776654


Q ss_pred             cCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHh
Q 020422          182 KDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYS  261 (326)
Q Consensus       182 ~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  261 (326)
                      ..     .+||+. |++.....++...+....||+++.++++.++...+++..+++...+..+.+++++++.........
T Consensus       167 ~~-----~~w~~~-f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (426)
T PRK12307        167 EA-----YGWRAA-FFVGLLPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVL  240 (426)
T ss_pred             cc-----CCHHHH-HHHHHHHHHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHH
Confidence            32     479874 332221111111111123333211110000000000111111111234556677665433221111


Q ss_pred             hHHHH--H-hhhcccccccccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHh
Q 020422          262 GLQQA--F-VWAEFTKEIVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFH  322 (326)
Q Consensus       262 g~~~~--~-~~~~~~~~~~~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~  322 (326)
                      .....  + ....+++.+...+.+.+..+......+++..+++++.|+++||  ||+.+..+.+..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~  306 (426)
T PRK12307        241 FSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMS  306 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            11111  1 1222232233334555677888888899999999999999999  777666665443

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.7e-22  Score=191.64  Aligned_cols=280  Identities=16%  Similarity=0.121  Sum_probs=195.2

Q ss_pred             cccCccccchhHHHHHHHHH--HHHHHHHh--------HHhhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhch
Q 020422           19 QVLTPKNYTRDVHILSCAFL--LIFLAYGA--------AQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGS   88 (326)
Q Consensus        19 ~~~~~~~~~~~~~~l~l~~~--~~~~~~~~--------~~~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Gr   88 (326)
                      +|+.+|+.++.+-+..+.++  ..+..+..        +.++.++.+...+.-+...++++++|++++++++.+.||++.
T Consensus        31 ~~~~~~~l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~l  110 (495)
T KOG2533|consen   31 PPKEERKLLRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPL  110 (495)
T ss_pred             cchHhhHHHHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCCh
Confidence            34556654444444444433  33333321        123445555444555556788999999999999999999999


Q ss_pred             hhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHH
Q 020422           89 KNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFA  167 (326)
Q Consensus        89 r~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~  167 (326)
                      .+.+....++++++++.. ..+|++.+++.|+++|+.++..||+...+++.++          .++|||+.+|++++..+
T Consensus       111 s~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy----------~~~e~g~r~~~~~a~~~  180 (495)
T KOG2533|consen  111 SKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWY----------GKSERGLRMGIWYASAS  180 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhc----------ChhhhhhhHHHHHHhcc
Confidence            999999999999888664 6889999999999999999999999999999998          77999999999999999


Q ss_pred             HhHHHHHHHHHHHhcCCC-CCCCCchhHHHHHHHHHHH-HHHHHHHhccCCcccc---cccc-----ccccch--hhchH
Q 020422          168 SHQFVGNLITLAVLKDDK-GGSTSGTTLLFIVFLGVIT-LGTILMCFLRKEEDKG---EKET-----ADASVN--FYSYL  235 (326)
Q Consensus       168 ~g~~~G~li~~~l~~~~~-~~~~~wr~~~f~~~~~~~~-l~~il~~~l~~~~~~~---~~~~-----~~~~~~--~~~~~  235 (326)
                      +|+++|+++++.+.+..+ ....+||+ .|++-+++++ .++++++++|+.+.+.   ++++     ++.++.  +..+.
T Consensus       181 ~g~i~ggliA~g~~~~~~~~~~~gW~~-~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~  259 (495)
T KOG2533|consen  181 LGNIFGGLIAYGVFKLNGSGGLAGWRW-LFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIEN  259 (495)
T ss_pred             hhhHHHHHHHHHhhhhcCCCCcCCcee-ehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCccc
Confidence            999999999988765222 23578998 4666666665 4556677888755421   1110     011100  00000


Q ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccc--cCcchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          236 VSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPA--LGVSGVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      +.+.+.+.+.++||++|......+++......+. .+.|.+..+.  .+..+...+...+.++++++.+++|.++||
T Consensus       260 ~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~-~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr  335 (495)
T KOG2533|consen  260 KFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFS-YWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDR  335 (495)
T ss_pred             ccCHHHHHHHHhchhHHHHHHHHHHHhhccccHH-HHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHH
Confidence            0123456789999999998776665544322222 3344443332  444467788888999999999999999999

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.89  E-value=1.1e-20  Score=179.24  Aligned_cols=268  Identities=13%  Similarity=0.040  Sum_probs=169.3

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHhhhhhhcC-CCCchh----HHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHH
Q 020422           26 YTRDVHILSCAFLLIFLAYGAAQNLETTVNT-EGNLGT----ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (326)
Q Consensus        26 ~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~-~~~~g~----~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~  100 (326)
                      .+|++++..+++...|......+.+...+.. +.+.+.    ...++...++++..++.|++.||+|+|+++.++.++++
T Consensus        32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~  111 (462)
T PRK15034         32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI  111 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            3578888888888878777766665555432 333322    23456667888889999999999999999999998887


Q ss_pred             HHHHHh-hh-----hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHH
Q 020422          101 LFVAAN-LF-----PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN  174 (326)
Q Consensus       101 ~~~~~~-~~-----~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~  174 (326)
                      +.+... ++     ++++.+++.|++.|++ +..+++....+++++          |+++||++.|++....++|..+++
T Consensus       112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wf----------p~~~rG~A~Gi~~g~G~~G~~l~~  180 (462)
T PRK15034        112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFF----------PKAKQGSALGINGGLGNLGVSVMQ  180 (462)
T ss_pred             HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHC----------CHhHhHHHHHHHHHHHhhHHHHHH
Confidence            777654 44     7899999999999998 668888888888886          888999999999877778877766


Q ss_pred             HHHHHHh-----cCCC--------CCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhchHHHHHHH
Q 020422          175 LITLAVL-----KDDK--------GGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKS  241 (326)
Q Consensus       175 li~~~l~-----~~~~--------~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (326)
                      ++...+.     ....        .+..+||.. .++...+.++..++.+++.++.++++           .+    +++
T Consensus       181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~-~~~~~~~~iv~~i~~~~~~~~~~~~~-----------~~----~~~  244 (462)
T PRK15034        181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANA-AWIWVPLLAIATIAAWSGMNDIASSR-----------AS----IAD  244 (462)
T ss_pred             HHHHHHHHHHHHHHhccccccccccchHHHHHH-HHHHHHHHHHHHHHHHHhCCCccccc-----------cC----HHH
Confidence            6554322     1110        012346653 33444444444444444333222110           11    233


Q ss_pred             HHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHH
Q 020422          242 ITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPL  319 (326)
Q Consensus       242 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~  319 (326)
                      ..+.+|+|+.|++....+.+.....- .+.+.|.+..+..+............+...++.+++|+++||  |++++..+.
T Consensus       245 ~~~vlk~~~~Wllslly~~tFG~fvg-~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~  323 (462)
T PRK15034        245 QLPVLQRLHLWLLSLLYLATFGSFIG-FSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINF  323 (462)
T ss_pred             HHHHhCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHH
Confidence            45688999999877655433211111 122333333333322222222333456677888999999999  666655555


Q ss_pred             HH
Q 020422          320 VF  321 (326)
Q Consensus       320 ~~  321 (326)
                      +.
T Consensus       324 i~  325 (462)
T PRK15034        324 IF  325 (462)
T ss_pred             HH
Confidence            43

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.89  E-value=5.5e-22  Score=190.84  Aligned_cols=262  Identities=9%  Similarity=-0.084  Sum_probs=165.1

Q ss_pred             HHHHHHHHHhHHhhhhhhcCCCCchh----HHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh------
Q 020422           37 FLLIFLAYGAAQNLETTVNTEGNLGT----ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN------  106 (326)
Q Consensus        37 ~~~~~~~~~~~~~l~~~l~~~~~~g~----~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~------  106 (326)
                      +++.+..+...+...+++.++.+.+.    +..+..+.++++++++.|+++||+|||+++..+.+++++.+...      
T Consensus        38 ~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~  117 (467)
T PRK09556         38 YLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGS  117 (467)
T ss_pred             HHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhc
Confidence            44444444444444444443333322    23456677889999999999999999999998888776655432      


Q ss_pred             hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCC
Q 020422          107 LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG  186 (326)
Q Consensus       107 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~  186 (326)
                      .+++++.+++.|+++|++++..+++..+++++++          |+++||+++|++..+.++|.++|+++...+..... 
T Consensus       118 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~----------~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~-  186 (467)
T PRK09556        118 GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWT----------PRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF-  186 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHc----------CccceeeeEEeeecccchhhhHHHHHHHHHHHhhc-
Confidence            2578999999999999999999999889999987          88999999999999999999999888765543211 


Q ss_pred             CCCCchhHHHHHHHHHHHH-HHHHHHhccCCccccc-cccc-----c--ccc----hhhchHHHHHHHHHHhhhcchhHH
Q 020422          187 GSTSGTTLLFIVFLGVITL-GTILMCFLRKEEDKGE-KETA-----D--ASV----NFYSYLVSLSKSITTLLADVRMLL  253 (326)
Q Consensus       187 ~~~~wr~~~f~~~~~~~~l-~~il~~~l~~~~~~~~-~~~~-----~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~  253 (326)
                       ..+||. .|.+.+++.++ +++.+++.++++++.. .+.+     +  .++    +++.+.++.++  .+.+|+|.++.
T Consensus       187 -~~~~~~-~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~  262 (467)
T PRK09556        187 -DGHVIG-MFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFV--EYVLKNPVIWL  262 (467)
T ss_pred             -cCcchh-HHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHH--HHHHcChHHHH
Confidence             125776 34444444443 3333344555432110 0000     0  000    00111111111  13678888887


Q ss_pred             HHHHHHHhhHHHHHhhhcccccccc--cccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhH
Q 020422          254 IIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLL  314 (326)
Q Consensus       254 l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~  314 (326)
                      .....++......... .+.|.+..  .+++..+.+.......++..+++++.|+++||  ||+.
T Consensus       263 ~~~~~~~~~~~~~~~~-~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~  326 (467)
T PRK09556        263 LCFANIFLYIVRIGID-NWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA  326 (467)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence            6655443332221112 23343332  34556677888888889999999999999999  4443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.89  E-value=5.2e-21  Score=182.41  Aligned_cols=227  Identities=11%  Similarity=0.017  Sum_probs=155.4

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      .+...+++++++++.|++.||+|||+++.++.+++++..... ..++++.+++.|++.|++.|..++...+++.+++   
T Consensus        64 ~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~---  140 (434)
T PRK11663         64 ATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWY---  140 (434)
T ss_pred             HHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhC---
Confidence            455666778889999999999999999999999888777664 7889999989999999999998888888888886   


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHH-HHHHHHhccCCccccc-
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTILMCFLRKEEDKGE-  221 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l-~~il~~~l~~~~~~~~-  221 (326)
                             |+++||+++|+++.+.++|..+|+++.+.+...     .+||+. |.+.+++.++ ..+..++++|++++.. 
T Consensus       141 -------~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~gw~~~-f~~~~i~~~~~~~~~~~~~~~~p~~~~~  207 (434)
T PRK11663        141 -------SRTERGGWWAIWNTAHNVGGALIPLVVGAIALH-----YGWRYG-MMIAGIIAIVVGLFLCWRLRDKPQAMGL  207 (434)
T ss_pred             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccHHHH-HHHHHHHHHHHHHHHHHHcCCCHhhcCC
Confidence                   778999999999999999999999988777643     479874 4444444333 3334456676543210 


Q ss_pred             -c------ccccc-cch--hhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCcchHHHH
Q 020422          222 -K------ETADA-SVN--FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGA  289 (326)
Q Consensus       222 -~------~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~g~~  289 (326)
                       +      +.++. .+.  ++.+.++.++  .+.+++++++.....++........... +.|.+..  .+.+..+.+..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~l~~~~g~s~~~a~~~  284 (434)
T PRK11663        208 PSVGEWRHDALELAQQQEGAGLSRKEILT--KYVLLNPYIWLLSFSYVLVYVVRAAIND-WGNLYMSETLGVDLVTANSA  284 (434)
T ss_pred             CCcccccccccccchhccccCCChhhhHH--HHHhcChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCCHHHHHHH
Confidence             0      00000 000  0112222111  1256778877755443333222222222 3333332  35566677888


Q ss_pred             HHHHHHHHHHHHHHhhhhhhh
Q 020422          290 MAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       290 ~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      ...++++..+++++.|+++||
T Consensus       285 ~~~~~~~~~~g~~~~g~l~dr  305 (434)
T PRK11663        285 VSMFELGGFIGALVAGWGSDK  305 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhHHH
Confidence            888999999999999999998

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.89  E-value=6e-21  Score=176.76  Aligned_cols=249  Identities=11%  Similarity=0.022  Sum_probs=159.5

Q ss_pred             hhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHH
Q 020422           49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASI  127 (326)
Q Consensus        49 ~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~  127 (326)
                      .++++++.+...-....+....++++++++.|+++||+|||+++..+.++.++..+.. +++|++.++++|.+.|++.+.
T Consensus        28 ~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  107 (377)
T TIGR00890        28 PLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGI  107 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3344444333322334567777888999999999999999999999998887777654 788999999999999999998


Q ss_pred             HHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHH
Q 020422          128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT  207 (326)
Q Consensus       128 ~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~  207 (326)
                      .++....++.++.           +++|+++.+++..+..+|..+++.+...+..     ..+||+. |.+.++..++..
T Consensus       108 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~-f~~~~~~~~~~~  170 (377)
T TIGR00890       108 AYGIALNTAVKWF-----------PDKRGLASGIIIGGYGLGSFILSPLITSVIN-----LEGVPAA-FIYMGIIFLLVI  170 (377)
T ss_pred             HHHhHHHHHHHHc-----------CcccHHHHHHHHHhcchhHhHHHHHHHHHHh-----cccHHHH-HHHHHHHHHHHH
Confidence            8877766666663           4689999999999988888776555444432     2479874 544455444433


Q ss_pred             -HHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccccCcchH
Q 020422          208 -ILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGV  286 (326)
Q Consensus       208 -il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  286 (326)
                       +..+++++++++++++.++     ... +  .++..+.+|+++++.+....+...+........+++...+.+.+.++.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~-----~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (377)
T TIGR00890       171 VLGAFLIGYPPGQLIKTNIE-----VSV-K--DYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFL  242 (377)
T ss_pred             HHHHHheecCchhccccCcc-----cch-h--hhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHH
Confidence             3344555544322111000     000 0  112335667888776554433333322222222222222223444567


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHh
Q 020422          287 GGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFH  322 (326)
Q Consensus       287 g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~  322 (326)
                      +......+++..+++++.|+++||  ||+.+..+.+..
T Consensus       243 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~  280 (377)
T TIGR00890       243 VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGIS  280 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence            888888999999999999999999  666655554433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.89  E-value=9.7e-21  Score=182.65  Aligned_cols=231  Identities=14%  Similarity=0.065  Sum_probs=145.7

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      .+..+.++.+++++.|+++||+|||+++..+.+++++..+.. +.+++..++++|+++|++.+...+ ...+++++.   
T Consensus        77 ~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~---  152 (476)
T PLN00028         77 GIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVS-CQYWMSTMF---  152 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHH-HHHHHHHhc---
Confidence            445556777888999999999999999999888887776654 678888888999999999986543 445677775   


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcC---C-CCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccc
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD---D-KGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK  219 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~---~-~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~  219 (326)
                             |+++||++.|+.....++|..+|+.+...+...   . .....+||+. |++.+++.++..++.++++++.++
T Consensus       153 -------~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~-f~i~g~l~l~~~l~~~~~~~~~p~  224 (476)
T PLN00028        153 -------NGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIA-FFVPGLLHIIMGILVLTLGQDLPD  224 (476)
T ss_pred             -------ChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHH-HHHHHHHHHHHHHHHHHHcCcCCC
Confidence                   888999999999888888888877665444221   1 0112479984 555555555444444444432221


Q ss_pred             cc-cccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc-cccCcchHHHHHHHHHHHH
Q 020422          220 GE-KETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFD  297 (326)
Q Consensus       220 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~gi~~  297 (326)
                      .+ ++..+....++.+..   +.+.+.+++++.+.+...++..........+..++.+.. .+.+.+..+.....+++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~  301 (476)
T PLN00028        225 GNYRELKKSGTMPKDSFS---KVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMN  301 (476)
T ss_pred             CchhhHHhcCccccccHH---HHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            11 100000000111111   223456788887765544332211111112122222222 2556667888888999999


Q ss_pred             HHHHHHhhhhhhh
Q 020422          298 AISLLGFATFFSV  310 (326)
Q Consensus       298 ~~g~~~~G~l~Dr  310 (326)
                      .++++++|+++||
T Consensus       302 ~ig~~~~G~lsDr  314 (476)
T PLN00028        302 LFARPAGGYLSDV  314 (476)
T ss_pred             HHHHhhhHHHHHH
Confidence            9999999999998

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.88  E-value=2.5e-20  Score=173.82  Aligned_cols=243  Identities=14%  Similarity=0.043  Sum_probs=164.1

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHH
Q 020422           50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASII  128 (326)
Q Consensus        50 l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~  128 (326)
                      ++++++.+........+.......+++++.|++.||+|||+++..+.++.++..... ..++++.+++.|++.|++.+..
T Consensus        31 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  110 (385)
T TIGR00710        31 IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAG  110 (385)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHH
Confidence            444454443333334566667778889999999999999999999988877766654 6788888899999999999999


Q ss_pred             HhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHH
Q 020422          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI  208 (326)
Q Consensus       129 ~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~i  208 (326)
                      .+...+++.|+.          |+++|++..|+......+|..+|+.+++.+...     .+||.. |.+..+..++..+
T Consensus       111 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~~~~~~-~~~~~~~~~~~~~  174 (385)
T TIGR00710       111 SVISQALVRDIY----------PGEELSRIYSILMPVLALAPAVAPLLGGYILVW-----LSWHAI-FAFLSLAGILLSA  174 (385)
T ss_pred             HHHHHHHHHHhc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCHHHH-HHHHHHHHHHHHH
Confidence            998888888886          888999999999999999999999998877543     468874 4444444444333


Q ss_pred             H-HHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCcch
Q 020422          209 L-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSG  285 (326)
Q Consensus       209 l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~  285 (326)
                      + .+..||++++++++       +.   ++..++..+.+|+|+++............ .+....+.|.+..  .+.+.++
T Consensus       175 ~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~  243 (385)
T TIGR00710       175 LIFFILPETLPYEARI-------QI---STYFETFLLLLKSKMFWGYALIYGASFGG-FFAFFSGAPFVYIDIMGVSPSV  243 (385)
T ss_pred             HHHHhCCCCCCCcccC-------CH---HHHHHHHHHHHcCchhHHHHHHHHHHHHH-HHHHHHcChHHHHHHcCCCHHH
Confidence            3 34456543322111       01   11123344567788877654332221111 1111122333322  3455667


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHH
Q 020422          286 VGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPL  319 (326)
Q Consensus       286 ~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~  319 (326)
                      .+......+++..++.++.|+++||  ||+.+..+.
T Consensus       244 ~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~  279 (385)
T TIGR00710       244 FGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGL  279 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            8888888999999999999999999  555444443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.88  E-value=9.4e-23  Score=187.59  Aligned_cols=290  Identities=13%  Similarity=0.047  Sum_probs=194.4

Q ss_pred             CCCCCCCCccccccccc-cCccccchhHHHHHHHHHHHHHHHHhHH----hhhhhhcCC-CCchhHHHHHHHHHHhhhhh
Q 020422            4 VDSRDEEAPLVADSLQV-LTPKNYTRDVHILSCAFLLIFLAYGAAQ----NLETTVNTE-GNLGTISLGILYTSFTCFSL   77 (326)
Q Consensus         4 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~l~~~~~~~~~~~~~----~l~~~l~~~-~~~g~~~~~~~~~~~~~~~l   77 (326)
                      .+..+..+|++..+..| .++++.++.+.++.+.-++.+.....+.    .+|+.+|.+ ..+|.++ .....++.++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~-~vf~v~~~i~sP   86 (493)
T KOG1330|consen    8 RTTTSSGNPLIELEGLDHLSMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQ-TVFIVVFMIASP   86 (493)
T ss_pred             CCCccCCCcccccccccccccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchh-HHHHHHHHHHHH
Confidence            34456788888753322 6888999999999998888888776654    556666654 5566654 455578899999


Q ss_pred             hHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchh
Q 020422           78 VASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIG  156 (326)
Q Consensus        78 ~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg  156 (326)
                      +.|.++||+.||+++.+|..+|.+.+++. +...+|++.++|.+.|+|++...+.+++.++|.+          |+++|+
T Consensus        87 l~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f----------~~~~Rs  156 (493)
T KOG1330|consen   87 LFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSF----------PDDKRS  156 (493)
T ss_pred             HHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcC----------cchhhh
Confidence            99999999999999999999999988764 7788999999999999999999999999999987          889999


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHH-HHHHHHhccCCccccccccccccchhhchH
Q 020422          157 SFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTILMCFLRKEEDKGEKETADASVNFYSYL  235 (326)
Q Consensus       157 ~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l-~~il~~~l~~~~~~~~~~~~~~~~~~~~~~  235 (326)
                      +.+++|+.+...|..+|.+.+..+....    ..||+. |+..++++++ +++.+++.+||+++.+++..+.. +..++.
T Consensus       157 ~~~~ify~~ipvGsglG~vvgs~va~~~----~~Wr~a-f~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~-~~~~~~  230 (493)
T KOG1330|consen  157 RVLGIFYFAIPVGSGLGYVVGSVVASLT----FWWRWA-FRGSAVLGVIVGLLVFLFVREPERGARDEVDGEN-KMVKPF  230 (493)
T ss_pred             HHHHHhhhhcccccceeEEeeeeeccCc----cceEEE-EEeehHHHHHHHHHHHhhccCcccccccccccCC-cCCCCc
Confidence            9999999999999988887776654432    248874 6566666655 44556778887763222111100 000111


Q ss_pred             HHHHHHHHHhhhcchhHHHHHHHH-HhhHHHHH--hhhccccccc-ccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          236 VSLSKSITTLLADVRMLLIIPLFA-YSGLQQAF--VWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~--~~~~~~~~~~-~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      ....++++...|++.+......+. ..+...++  +...+.++.. -.+.+.+...+...+...++.+|.+++|.++||
T Consensus       231 ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~  309 (493)
T KOG1330|consen  231 TSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDK  309 (493)
T ss_pred             cchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHH
Confidence            122344445555555544332221 12221122  1111212211 112222333444556667788999999999998

>PRK10133 L-fucose transporter; Provisional

Probab=99.88  E-value=1.1e-20  Score=180.29  Aligned_cols=291  Identities=11%  Similarity=0.081  Sum_probs=180.7

Q ss_pred             CccccccccccCccccchhHHHHHHHHHHHHHHHHhHHhhhhhhcCCCCchh----HHHHHHHHHHhhhhhhHHHHHHHh
Q 020422           11 APLVADSLQVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGT----ISLGILYTSFTCFSLVASLVVRVL   86 (326)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~g~----~~~~~~~~~~~~~~l~~g~l~d~~   86 (326)
                      |..=+-||.|.+.++....++++.+.++..-........+.+.+.++.+.+.    ...+..+.++.+++++.|++.||+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~   88 (438)
T PRK10133          9 QSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL   88 (438)
T ss_pred             hhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344557777777778888888888777665555555544444443333332    335666678889999999999999


Q ss_pred             chhhHHHHHhHHHHHHHHHh----hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHH
Q 020422           87 GSKNALILGTTGYWLFVAAN----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEF  162 (326)
Q Consensus        87 Grr~~l~~g~~~~~~~~~~~----~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~  162 (326)
                      |||+++..+..++++....+    .++++..++++|+++|+|.|..+++...++.++.          ++++|++.++++
T Consensus        89 G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~----------~~~~~~~~~s~~  158 (438)
T PRK10133         89 SYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG----------PESSGHFRLNLA  158 (438)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC----------ChhhHHHHHHHH
Confidence            99999999999988877542    4689999999999999999999999888888764          666677789999


Q ss_pred             HHHHHHhHHHHHHHHHHHhc-CCC------------CCCCCchhH-------HHHHHHHHHHHHHHHHHhccCCcccccc
Q 020422          163 WGMFASHQFVGNLITLAVLK-DDK------------GGSTSGTTL-------LFIVFLGVITLGTILMCFLRKEEDKGEK  222 (326)
Q Consensus       163 ~~~~~~g~~~G~li~~~l~~-~~~------------~~~~~wr~~-------~f~~~~~~~~l~~il~~~l~~~~~~~~~  222 (326)
                      ...+.+|..+|++++..+.. ...            ....+||..       .|.....+..+..++..+.+.|+.++++
T Consensus       159 ~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~  238 (438)
T PRK10133        159 QTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN  238 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence            99999999999988765431 100            000134321       1222122221111222222222111111


Q ss_pred             ccccccchhhchHHHHHHHHHHhhhcchhHHHHHH-HHHhhHHHHHhhhcccccccc--cccCcchHHHHHHHHHHHHHH
Q 020422          223 ETADASVNFYSYLVSLSKSITTLLADVRMLLIIPL-FAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAFDAI  299 (326)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~gi~~~~  299 (326)
                      + +   +++..+.   .++..+.+++|+++..... +++.+.+.+. ..+.++.+.+  .+.+....++.+..+.++..+
T Consensus       239 ~-~---~~~~~~~---~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~v  310 (438)
T PRK10133        239 H-S---DAKQGSF---SASLSRLARIRHWRWAVLAQFCYVGAQTAC-WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFI  310 (438)
T ss_pred             c-c---cccccch---hhhHHHHHhCchHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHH
Confidence            0 0   0011111   1223356778887654332 2223333222 2222222222  356677889999999999999


Q ss_pred             HHHHhhhhhhh--hhhHHhHHH
Q 020422          300 SLLGFATFFSV--HSLLVGLPL  319 (326)
Q Consensus       300 g~~~~G~l~Dr--R~~~~~~g~  319 (326)
                      |+.++|++.||  ||+++..+.
T Consensus       311 G~~~~g~l~~r~g~~~~l~~~~  332 (438)
T PRK10133        311 GRFTGTWLISRFAPHKVLAAYA  332 (438)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHH
Confidence            99999999999  555544444

>PRK09952 shikimate transporter; Provisional

Probab=99.88  E-value=1.3e-20  Score=179.95  Aligned_cols=237  Identities=14%  Similarity=0.076  Sum_probs=143.1

Q ss_pred             HHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhH--------HHHHHHHHhhhhhHHHHhhhhHHHH
Q 020422           67 ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWY--------TMVPASLYLGFAASIIWVGEGTYLT  137 (326)
Q Consensus        67 ~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~--------~l~~~r~l~G~g~g~~~~~~~~~l~  137 (326)
                      +.++...+++++.|+++||+|||+++..+.+++++.++.. +++++.        .+++.|.++|++.|..+++...++.
T Consensus        72 ~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~  151 (438)
T PRK09952         72 VGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV  151 (438)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence            4445567888899999999999999999999999888765 777765        5778999999999999999899999


Q ss_pred             HHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC---CCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 020422          138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLLFIVFLGVITLGTILMCFLR  214 (326)
Q Consensus       138 ~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~---~~~~~wr~~~f~~~~~~~~l~~il~~~l~  214 (326)
                      |+.          |+++||+..+....+..+|..++..+...+.....   ....+||.. |.+..+..++...+...+|
T Consensus       152 e~~----------p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~-f~~~~~~~l~~~~l~~~~~  220 (438)
T PRK09952        152 ESA----------PKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIP-FLFSIVLVLIALWVRNGME  220 (438)
T ss_pred             HhC----------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHH-HHHHHHHHHHHHHHHHhCC
Confidence            987          88899999998888888888887766554432211   113689974 4433333332222222344


Q ss_pred             CCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccccC--cchHHHHHHH
Q 020422          215 KEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG--VSGVGGAMAV  292 (326)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~  292 (326)
                      |+++..++..++.+.+++.+..      ....++|+.+........+.....+....+.+.+..+..+  .+........
T Consensus       221 es~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~  294 (438)
T PRK09952        221 ESAEFEQQQHEQAAAKKRIPVI------EALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLL  294 (438)
T ss_pred             CChhHHHHHhhcccccccCCHH------HHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            4432111100000000011111      1234566655543322211111111111233333322233  3333344455


Q ss_pred             HHHHHHHHHHHhhhhhhh--hhhHHhHHHH
Q 020422          293 YGAFDAISLLGFATFFSV--HSLLVGLPLV  320 (326)
Q Consensus       293 ~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~  320 (326)
                      .++...++..+.|+++||  ||+.+..+.+
T Consensus       295 ~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~  324 (438)
T PRK09952        295 VGGLSCLTIPCFAWLADRFGRRRVYITGAL  324 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            677778889999999999  6666655543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.88  E-value=1.9e-20  Score=176.53  Aligned_cols=233  Identities=14%  Similarity=0.062  Sum_probs=150.1

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      .+...++..+++++.|+++||+|||+++..+.++.++..+.. +.++++.+++.|++.|++.+..++...+++.|+.   
T Consensus        56 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~---  132 (406)
T PRK11551         56 FSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAV---  132 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc---
Confidence            455556677888999999999999999999988777766554 6788998999999999999999988888999986   


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHH-HHHHhccCCcccccc
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT-ILMCFLRKEEDKGEK  222 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~-il~~~l~~~~~~~~~  222 (326)
                             |+++|++++++++.+..+|..+++.++..+..     ..+||.. |.+..++.++.. +..+++||+++++++
T Consensus       133 -------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~  199 (406)
T PRK11551        133 -------GPRLRGTAVSLMYCGVPFGGALASVIGVLAAG-----DAAWRHI-FYVGGVGPLLLVPLLMRWLPESRAFAQA  199 (406)
T ss_pred             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----ccCHHHH-HHHHHHHHHHHHHHHHHhCCCChhHHhc
Confidence                   78899999999999999999999888766543     2478874 444444333332 334567876542211


Q ss_pred             ccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccccCcchHHHHHHHHHHHHHHHHH
Q 020422          223 ETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAISLL  302 (326)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gi~~~~g~~  302 (326)
                      +.++   +++.+..   +...+..++++.+.+....+.............++...+.+.+....+......+++..++++
T Consensus       200 ~~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~  273 (406)
T PRK11551        200 AGAG---KQRAPVL---RALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSL  273 (406)
T ss_pred             cCcc---hhhhhhH---HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHH
Confidence            1000   0111111   111111112222222222221111111112222222333455666788888899999999999


Q ss_pred             Hhhhhhhh--hhhHHhHHH
Q 020422          303 GFATFFSV--HSLLVGLPL  319 (326)
Q Consensus       303 ~~G~l~Dr--R~~~~~~g~  319 (326)
                      +.|+++||  ||+.+..+.
T Consensus       274 ~~g~l~dr~g~~~~~~~~~  292 (406)
T PRK11551        274 LIGALMDRLRPRRVVLLIY  292 (406)
T ss_pred             HHHHHHHHHhHHHHHHHHH
Confidence            99999999  555544443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.88  E-value=2.7e-21  Score=176.50  Aligned_cols=266  Identities=8%  Similarity=0.020  Sum_probs=190.9

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhhcCCCCchhH----HHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-h
Q 020422           33 LSCAFLLIFLAYGAAQNLETTVNTEGNLGTI----SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L  107 (326)
Q Consensus        33 l~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~----~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~  107 (326)
                      .-++++.+|..+...+..++++.++.+.+-.    ..+.++++|+++.++.|.++||.++|..+..|+++.++..+.+ +
T Consensus        34 ~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gf  113 (448)
T COG2271          34 IFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGF  113 (448)
T ss_pred             HHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhh
Confidence            3444666666666666666666655433222    2577788999999999999999999999999999998888776 7


Q ss_pred             hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHH--HHHhcCCC
Q 020422          108 FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT--LAVLKDDK  185 (326)
Q Consensus       108 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~--~~l~~~~~  185 (326)
                      .++...+.+.-.++|+.+|.-||++...+++++          +.+|||+..+++++..++|..+-+++.  +.+..+  
T Consensus       114 s~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wf----------sr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~--  181 (448)
T COG2271         114 SPSLFLFAVLWVLNGWFQGMGWPPCARTITHWF----------SRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH--  181 (448)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHc----------CccccCceEEEehhhhhcccchHHHHHHHHHHHhc--
Confidence            889999888999999999999999999999997          889999999999999999998888877  555432  


Q ss_pred             CCCCCchhHHHHHHHHHHH-HHHHHHHhccCCcccc--------cccccc--ccchhh--chHHHHHHHHHHhhhcchhH
Q 020422          186 GGSTSGTTLLFIVFLGVIT-LGTILMCFLRKEEDKG--------EKETAD--ASVNFY--SYLVSLSKSITTLLADVRML  252 (326)
Q Consensus       186 ~~~~~wr~~~f~~~~~~~~-l~~il~~~l~~~~~~~--------~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~  252 (326)
                         .+||.. |+..+++++ +++++.+.++|++++.        ++|..+  .+++++  .+.++.+.  ..+++||.+|
T Consensus       182 ---~~w~~~-f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~--~YVL~Nk~iW  255 (448)
T COG2271         182 ---GGWRAA-FYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFV--KYVLKNKLIW  255 (448)
T ss_pred             ---cchhHH-HHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHH--HHHHcChHHH
Confidence               479875 545555554 4555666778766531        111111  111111  33444443  2578999999


Q ss_pred             HHHHHHHHhhHHHHHhhhcccccccc--cccCcchHHHHHHHHHHHHHHHHHHhhhhhhh----hhhHHhH
Q 020422          253 LIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAFDAISLLGFATFFSV----HSLLVGL  317 (326)
Q Consensus       253 ~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr----R~~~~~~  317 (326)
                      .+....++.-..-.- ..++.|.+..  ++.+.....+....+-.++..|++++|++|||    ||-+..+
T Consensus       256 ~la~a~vfvYivR~g-i~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~  325 (448)
T COG2271         256 LLALANVFVYVVRYG-INDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMAL  325 (448)
T ss_pred             HHHHHHHHHHHHHHH-HhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHH
Confidence            887665444332211 2244555443  46667788999999999999999999999999    5544333

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.88  E-value=2.8e-20  Score=174.39  Aligned_cols=261  Identities=10%  Similarity=-0.011  Sum_probs=171.2

Q ss_pred             hhHHHHHHHHHHHHHHHHhHH----hhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHH
Q 020422           28 RDVHILSCAFLLIFLAYGAAQ----NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (326)
Q Consensus        28 ~~~~~l~l~~~~~~~~~~~~~----~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~  103 (326)
                      |.++.+..+.+..........    .++++++.+........+....++.+++++.|++.||+|||+++..+.++.++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            445555555444433333333    3444444443333334667778888999999999999999999999998888777


Q ss_pred             HHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          104 AAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       104 ~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                      +.. +++|++.+++.|++.|++.+...+....++.++.          |+++|+++.+++..+..+|..+|+.++..+..
T Consensus        83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  152 (382)
T PRK10091         83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKII----------KPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ  152 (382)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC----------ChHHhhHHHHHHHHHHHHHHHHhccHHHHHhh
Confidence            654 7889999999999999999998887777777775          77889999999999999999999988877654


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHHHH-HHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHh
Q 020422          183 DDKGGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYS  261 (326)
Q Consensus       183 ~~~~~~~~wr~~~f~~~~~~~~l~~i-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  261 (326)
                      .     .+||+. |.+..+..++..+ ..+.+||++++++.           +.++.    .+.+|+++.+......+..
T Consensus       153 ~-----~gwr~~-f~~~~~~~~~~~~~~~~~lp~~~~~~~~-----------~~~~~----~~~~~~~~~~~~~~~~~~~  211 (382)
T PRK10091        153 E-----FSWRYT-FLLIAVFNIAVLASIYFWVPDIRDEAKG-----------GLREQ----FHFLRSPAPWLIFAATMFG  211 (382)
T ss_pred             h-----ccHHHH-HHHHHHHHHHHHHHHHHhCCCCCccccc-----------CHHHH----HHHhcChHHHHHHHHHHHH
Confidence            3     479874 5444444443332 33456664321110           11111    2445677666544332222


Q ss_pred             hHHHHHhhhcccccccc-cccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHH
Q 020422          262 GLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPL  319 (326)
Q Consensus       262 g~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~  319 (326)
                      ......+.+..++.+.. .+.+.++.++.....+++..+++++.|++.||  ||+.+..+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~  272 (382)
T PRK10091        212 NAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTD  272 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHH
Confidence            11111111222333322 35566788888999999999999999999999  555544443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.88  E-value=6.5e-20  Score=177.76  Aligned_cols=276  Identities=13%  Similarity=0.066  Sum_probs=175.6

Q ss_pred             HHHHHHHHHHHHHHHhHH----hhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh
Q 020422           31 HILSCAFLLIFLAYGAAQ----NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN  106 (326)
Q Consensus        31 ~~l~l~~~~~~~~~~~~~----~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~  106 (326)
                      ..+.++.++........+    .+..+++.+.+...+..+...++++.++++.|+++||+|||++++.+.+++++..+.+
T Consensus         9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~   88 (495)
T PRK14995          9 VIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAA   88 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            333444444444443343    3344444444333444556666778888999999999999999999999988877654


Q ss_pred             -hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC
Q 020422          107 -LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK  185 (326)
Q Consensus       107 -~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~  185 (326)
                       .++|++.++++|+++|+|.+...+.....+.+..         .|+++|++++|++.....+|..+||.+++.+.+.  
T Consensus        89 ~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~---------~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~--  157 (495)
T PRK14995         89 AFSPTASWLIATRALLAIGAAMIVPATLAGIRATF---------TEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH--  157 (495)
T ss_pred             HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--
Confidence             7899999999999999999998887666665553         2678999999999999999999999999888654  


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHH-HHHhccCCcccccc--ccccc--------------c--chhh-chH----------
Q 020422          186 GGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEEDKGEK--ETADA--------------S--VNFY-SYL----------  235 (326)
Q Consensus       186 ~~~~~wr~~~f~~~~~~~~l~~i-l~~~l~~~~~~~~~--~~~~~--------------~--~~~~-~~~----------  235 (326)
                         .+||+. |++...+.++..+ ..+++|++++++++  |....              .  .... .++          
T Consensus       158 ---~gwr~~-f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  233 (495)
T PRK14995        158 ---FYWGSV-FLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGA  233 (495)
T ss_pred             ---CChHHH-HHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence               479984 5454544444433 34556664332111  10000              0  0000 000          


Q ss_pred             -------HHHHHH-----HHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCcchHHHHHHHHHHHHHHHH
Q 020422          236 -------VSLSKS-----ITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAFDAISL  301 (326)
Q Consensus       236 -------~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~gi~~~~g~  301 (326)
                             ..+.+.     ..+.+|++.+.......+..++...... .+.|.+.+  .+.++.+.|+.+...+++..+++
T Consensus       234 ~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~  312 (495)
T PRK14995        234 LLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFE-LLMAQELQFVHGLSPLEAGMFMLPVMVASGFSG  312 (495)
T ss_pred             HHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence                   000000     0245666666554433333322211111 22233322  45667789999999999999999


Q ss_pred             HHhhhhhhh--hhhHHhHHHHHh
Q 020422          302 LGFATFFSV--HSLLVGLPLVFH  322 (326)
Q Consensus       302 ~~~G~l~Dr--R~~~~~~g~~~~  322 (326)
                      .+.|++.||  ||+++..|.++.
T Consensus       313 ~~~g~l~~r~g~~~~~~~g~~~~  335 (495)
T PRK14995        313 PIAGILVSRLGLRLVATGGMALS  335 (495)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHH
Confidence            999999999  677766666543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.88  E-value=4e-20  Score=170.70  Aligned_cols=235  Identities=13%  Similarity=0.016  Sum_probs=156.3

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhh-----hhHHHHHHHHHhhhhhHHHHhhhhHHHHH
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFP-----SWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~-----~~~~l~~~r~l~G~g~g~~~~~~~~~l~~  138 (326)
                      .++..+...+++++.|+++||+|||+++..+.++.++..... +.+     +++.+++.|++.|++.+..+++..+++.|
T Consensus        40 ~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~  119 (365)
T TIGR00900        40 ALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPD  119 (365)
T ss_pred             HHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455556777889999999999999999999888766655443 444     88888899999999999999998999999


Q ss_pred             HhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 020422          139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (326)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~  218 (326)
                      +.          |+++|++..|+...+.++|..+|+++++.+...     .+||+. |++..+..++..++.+.++++++
T Consensus       120 ~~----------~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~  183 (365)
T TIGR00900       120 LV----------PEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT-----LGIKWA-IWVDAVGFAISALLIVSVRIPEL  183 (365)
T ss_pred             cC----------CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHH-HHHHHHHHHHHHHHHHhcccccC
Confidence            87          788999999999999999999999998887653     468874 44434434444333344433222


Q ss_pred             ccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccccccc--ccCcchHHHHHHHHHHH
Q 020422          219 KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAF  296 (326)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~gi~  296 (326)
                      +++++.+ .   ++...++..+...+.+|+|+++......+............+.|.+..+  +.+..+.+......+++
T Consensus       184 ~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (365)
T TIGR00900       184 AASEIQA-L---SNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLG  259 (365)
T ss_pred             CCccccc-c---chhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            1111100 0   0011111112233456778777655443333322221221233444332  45566788889999999


Q ss_pred             HHHHHHHhhhhhhh--hhhHHhHHH
Q 020422          297 DAISLLGFATFFSV--HSLLVGLPL  319 (326)
Q Consensus       297 ~~~g~~~~G~l~Dr--R~~~~~~g~  319 (326)
                      ..+++.+.+++.||  ||+.+..+.
T Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~~~~  284 (365)
T TIGR00900       260 ALLGALLLGLLGRYFKRMALMTGAI  284 (365)
T ss_pred             HHHHHHHHHHHHHHhchhHHHHHHH
Confidence            99999999999999  555555443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.88  E-value=4.4e-20  Score=173.12  Aligned_cols=280  Identities=11%  Similarity=0.021  Sum_probs=169.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHhhhhhh----cCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHH
Q 020422           27 TRDVHILSCAFLLIFLAYGAAQNLETTV----NTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (326)
Q Consensus        27 ~~~~~~l~l~~~~~~~~~~~~~~l~~~l----~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~  102 (326)
                      ++.+..+.++++.....+...+.+.+++    +.+........++......+++++.|.++||+|||+++..+.++.++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~   90 (405)
T TIGR00891        11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAG   90 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3444555555555555555444444444    333333333356667788899999999999999999999998888776


Q ss_pred             HHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422          103 VAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (326)
Q Consensus       103 ~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~  181 (326)
                      .+.. +.++++.++..|++.|++.+..++...+++.|+.          |+++|+++.+++..+..+|..+|+.++..+.
T Consensus        91 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~  160 (405)
T TIGR00891        91 TLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESW----------PKHLRNKASGLLISGYAVGAVVAAQVYSLVV  160 (405)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhC----------ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6654 6789999999999999999999999889999986          8899999999999999999999999887765


Q ss_pred             cCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccc-cccccc-cch------hhchHHHHHH----HHHHhhh-c
Q 020422          182 KDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGE-KETADA-SVN------FYSYLVSLSK----SITTLLA-D  248 (326)
Q Consensus       182 ~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~-~~~~~~-~~~------~~~~~~~~~~----~~~~~~~-~  248 (326)
                      ...   ..+||.. |.+..+..++..+....+||+++.++ ++.++. .+.      ++...++..+    ..++..+ +
T Consensus       161 ~~~---~~~w~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (405)
T TIGR00891       161 PVW---GDGWRAL-FFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKR  236 (405)
T ss_pred             Hhc---CccHHHH-HHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhh
Confidence            432   1358874 43333333333334455676543111 110000 000      0000000001    1111111 1


Q ss_pred             ch-hHHHHHHHHHhhHHHHHhhhcccccccc--cccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHH
Q 020422          249 VR-MLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVF  321 (326)
Q Consensus       249 ~~-~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~  321 (326)
                      +. +..+.......+....... .+.|.+..  .+.+.++.+......+++..+++++.|+++||  ||+.+..+.+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~  313 (405)
T TIGR00891       237 WPTFVYLVVLVLFANLYSHPIQ-DLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLA  313 (405)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHH
Confidence            11 1111111111111111111 12233322  24556678888888999999999999999999  66665555443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.87  E-value=9.4e-20  Score=172.05  Aligned_cols=245  Identities=12%  Similarity=0.055  Sum_probs=162.0

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHH
Q 020422           50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASII  128 (326)
Q Consensus        50 l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~  128 (326)
                      ++++++.+........+..+.++.+++++.|+++||+|||+++..+...+++..+.. .+++++.++..|+++|++.+..
T Consensus        39 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~  118 (406)
T PRK15402         39 VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFI  118 (406)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhH
Confidence            334444443333344566777788889999999999999999999988877766654 6788888899999999999988


Q ss_pred             HhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHH
Q 020422          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI  208 (326)
Q Consensus       129 ~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~i  208 (326)
                      ++...+++.|..          |+++|++..++.......+..+|+.++..+.+.     .+||+. |++..++.++..+
T Consensus       119 ~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-----~~w~~~-~~~~~~~~~~~~~  182 (406)
T PRK15402        119 GAVGYAAIQESF----------EEADAIKITALMANVALLAPLLGPLVGAALIHV-----LPWRGM-FVLFAALAALSFF  182 (406)
T ss_pred             HHHHHHHHHHHh----------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCccHH-HHHHHHHHHHHHH
Confidence            887778888776          778899999998888888899999988776543     478874 4444555444433


Q ss_pred             H-HHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCcch
Q 020422          209 L-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSG  285 (326)
Q Consensus       209 l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~  285 (326)
                      . .+..||++++++++         .+.++..++..+.++||+++...............+. .+.|.+..  .+.+..+
T Consensus       183 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~g~~~~~  252 (406)
T PRK15402        183 GLWRAMPETAGRVGEK---------LSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWI-ALSPVILISGEQLSSYE  252 (406)
T ss_pred             HHHHhCCCCCcccccc---------ccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHH
Confidence            3 34456543321111         0111122233467788888775544333322211111 12233322  2445556


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHH
Q 020422          286 VGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLV  320 (326)
Q Consensus       286 ~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~  320 (326)
                      .++......++..+++++.|+++||  ||+.+..+.+
T Consensus       253 ~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~  289 (406)
T PRK15402        253 YGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLW  289 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            7777777777888999999999999  5555555543

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.87  E-value=3.5e-20  Score=171.93  Aligned_cols=276  Identities=9%  Similarity=0.012  Sum_probs=166.9

Q ss_pred             hHHHHHHHHHHHHHHHHhHHh-----hhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHH
Q 020422           29 DVHILSCAFLLIFLAYGAAQN-----LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (326)
Q Consensus        29 ~~~~l~l~~~~~~~~~~~~~~-----l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~  103 (326)
                      +.+...++++..+..+.....     ++++++.+........+...++..+++++.|++.||+|||+++..+.++.++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            345556666665555554443     334444443333334566667788999999999999999999999998888776


Q ss_pred             HHh-hhh-hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422          104 AAN-LFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (326)
Q Consensus       104 ~~~-~~~-~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~  181 (326)
                      +.. +.+ +++.+++.|+++|++.+. ++....+++++.          |+++|+++.+++....++|..+|+.++..+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  150 (366)
T TIGR00886        82 LWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFF----------PKKIQGTALGLAAGWGNMGGGVAQFVMPPII  150 (366)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhc----------CHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            654 677 899999999999999765 455567777776          7889999999998888888888877765554


Q ss_pred             cCC-----CCCCCCchhHHHHHHHHHHH-HHHHHHHhccCCccccccccc-cccchhhchHHHHHHHHHHhhhcchhHHH
Q 020422          182 KDD-----KGGSTSGTTLLFIVFLGVIT-LGTILMCFLRKEEDKGEKETA-DASVNFYSYLVSLSKSITTLLADVRMLLI  254 (326)
Q Consensus       182 ~~~-----~~~~~~wr~~~f~~~~~~~~-l~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  254 (326)
                      ...     +....+||+..++...++.. +..+...+.+|.+++++++.+ +.........++..++..+.+++|+++..
T Consensus       151 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (366)
T TIGR00886       151 GSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWIL  230 (366)
T ss_pred             HHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhH
Confidence            321     01124788753233333332 333334445553332111110 00000000001112234567788887765


Q ss_pred             HHHHHHhhHHHHHhhhccccccccc--ccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHh
Q 020422          255 IPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVG  316 (326)
Q Consensus       255 ~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~  316 (326)
                      ....+.......... .+.+.+..+  +.+..+.+.......++..++.++.|+++||  ||+...
T Consensus       231 ~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~  295 (366)
T TIGR00886       231 ALLYSVTFGSFLGVS-SIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLL  295 (366)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHH
Confidence            443332211111111 222333322  3455677888888888999999999999999  544433

>PRK15075 citrate-proton symporter; Provisional

Probab=99.87  E-value=2.8e-20  Score=177.42  Aligned_cols=270  Identities=12%  Similarity=0.051  Sum_probs=158.8

Q ss_pred             hHHHHHHHHHHHHHHHHhHHhhhhhhcCC-----CCchhHHHH--H---HHHHHhhhhhhHHHHHHHhchhhHHHHHhHH
Q 020422           29 DVHILSCAFLLIFLAYGAAQNLETTVNTE-----GNLGTISLG--I---LYTSFTCFSLVASLVVRVLGSKNALILGTTG   98 (326)
Q Consensus        29 ~~~~l~l~~~~~~~~~~~~~~l~~~l~~~-----~~~g~~~~~--~---~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~   98 (326)
                      ....+.++.++.+..+...+...+.+..+     .+.+....+  .   .++...+++++.|+++||+|||++++.+.++
T Consensus        16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~   95 (434)
T PRK15075         16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI   95 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence            44445555566666666555444444322     222322211  1   1222346789999999999999999999998


Q ss_pred             HHHHHHHh-hhhhhH--------HHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHh
Q 020422           99 YWLFVAAN-LFPSWY--------TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASH  169 (326)
Q Consensus        99 ~~~~~~~~-~~~~~~--------~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g  169 (326)
                      +++.++.. +++++.        .+++.|+++|++.|..+++...+++|++          |+++||++++++..+.+.|
T Consensus        96 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~----------p~~~rg~~~~~~~~~~~~g  165 (434)
T PRK15075         96 MASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA----------TPGRKGFYTSWQSASQQVA  165 (434)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhC----------CcccchHHHHHHHHHHHHH
Confidence            88877765 677765        4678999999999999998889999987          8899999999999888888


Q ss_pred             HHHHHHHHHHHhcCCC---CCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhchHHHHHHHHHHhh
Q 020422          170 QFVGNLITLAVLKDDK---GGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLL  246 (326)
Q Consensus       170 ~~~G~li~~~l~~~~~---~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (326)
                      ..+|+.++..+.....   ....+||.. |++..   ... ++.+++++..++.++...+   +++.+.++.++   +..
T Consensus       166 ~~~g~~~g~~l~~~~~~~~~~~~gWr~~-f~~~~---~~~-~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~---~~~  234 (434)
T PRK15075        166 VVFAALLGYLLNQWLSPAQMAEWGWRIP-FLIGC---LIV-PFIFLIRRSLEETEEFLAR---KHRPSMREIFR---SLA  234 (434)
T ss_pred             HHHHHHHHHHHHHhCCHHHHhccchHHH-HHHHH---HHH-HHHHHHHHhcCCCHHHHHh---hhccccccHHH---HHH
Confidence            8888888766543211   124689974 33211   111 2222233222211110000   00111111111   223


Q ss_pred             hcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHH
Q 020422          247 ADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPL  319 (326)
Q Consensus       247 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~  319 (326)
                      ++++.+..............+....+.|.+..  .+.+.++.++....+++++.+++++.|+++||  ||+..+.+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~  311 (434)
T PRK15075        235 ANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFT  311 (434)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            44444432222111111111111223444433  24555667788888889999999999999999  666555443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.87  E-value=1.7e-19  Score=170.98  Aligned_cols=236  Identities=13%  Similarity=0.081  Sum_probs=164.9

Q ss_pred             hhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHH
Q 020422           49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASI  127 (326)
Q Consensus        49 ~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~  127 (326)
                      .+.++++.+.+......++.++++++++++.|+++||+|||++++.+..++++..+.. .++|++.++++|+++|++.+.
T Consensus        41 ~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~  120 (413)
T PRK15403         41 NVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICF  120 (413)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            3455566555556666888889999999999999999999999999998888777664 788999999999999999986


Q ss_pred             HHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHH
Q 020422          128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT  207 (326)
Q Consensus       128 ~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~  207 (326)
                      ..+....++.|..          |+++|+++++++..+..+|..+|+++++.+.+.     .+||+. |++..+..+++.
T Consensus       121 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~-----~gw~~~-f~~~~~~~~i~~  184 (413)
T PRK15403        121 IATVGYVTVQEAF----------GQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF-----VHWKVL-FAIIAVMGLIAF  184 (413)
T ss_pred             HHHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCHHHH-HHHHHHHHHHHH
Confidence            6555556666665          778899999999999999999999998877643     479874 555555555554


Q ss_pred             HH-HHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccccccc--ccCcc
Q 020422          208 IL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVS  284 (326)
Q Consensus       208 il-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~  284 (326)
                      ++ .+.+||++++++++         .+.++..++..+.+|||+++............. +.+..+.|.+..+  +.+..
T Consensus       185 ~~~~~~lp~~~~~~~~~---------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~-~~~~~~~P~~l~~~~g~s~~  254 (413)
T PRK15403        185 VGLLLAMPETVKRGAVP---------FSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPM-MSWVAVSPVILIDAGGMTTS  254 (413)
T ss_pred             HHHHHhCCCCccccCCC---------CChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHhChHHHHHhcCCCHH
Confidence            43 34577754321111         011222344557789999987655443332221 1121234444332  45566


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          285 GVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       285 ~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      +.++.......+..+++.+.+++.+|
T Consensus       255 ~~gl~~~~~~~~~~i~~~l~~~~~~~  280 (413)
T PRK15403        255 QFAWTQVPVFGAVIVANAIVARFVKD  280 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            78888877788888888888876643

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.87  E-value=6.3e-20  Score=171.89  Aligned_cols=264  Identities=16%  Similarity=0.205  Sum_probs=164.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhHHhhhhhhcCCCCchh----HHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHH
Q 020422           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGT----ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (326)
Q Consensus        25 ~~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~g~----~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~  100 (326)
                      +.+|+++.+.++.++.-.++.....+.+.+.++.+.+.    ...+...++..+++++.|+++||+|||+++..+.++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~   82 (381)
T PRK03633          3 TYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888888876665555555444444433333322    23556666778889999999999999999999998888


Q ss_pred             HHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHH
Q 020422          101 LFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA  179 (326)
Q Consensus       101 ~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~  179 (326)
                      +..... ..+|++.++++|+++|++.+..++...+.+.+..          ++++|+++++++..+.++|..+|+.++..
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  152 (381)
T PRK03633         83 AGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSG----------TSRNRGRLLAAYMMVYYLGTVLGQLLVSK  152 (381)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            766654 6889999999999999999998887666666654          77899999999999999999999998877


Q ss_pred             HhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHH
Q 020422          180 VLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA  259 (326)
Q Consensus       180 l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  259 (326)
                      +....     .| ...+. ...... ..+...+.+.++++++++       +..+.       .+.+++|.++......+
T Consensus       153 l~~~~-----~~-~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~-------~~~~~-------~~~~~~~~~~~~~~~~~  210 (381)
T PRK03633        153 VSTEL-----MS-VLPWV-TGLVLA-AILPLLFTRILNQQAENH-------DSTSI-------WPMLKLRQARLGVNGCI  210 (381)
T ss_pred             ccccc-----cc-hHHHH-HHHHHH-HHHHHHHhcccCCCCCCC-------CCCCH-------HHHHHhcchHHHHHHHH
Confidence            64321     11 11121 111111 112122222221111100       01111       23456666554333222


Q ss_pred             HhhHHHHHhhhccccccc-ccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHH
Q 020422          260 YSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVF  321 (326)
Q Consensus       260 ~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~  321 (326)
                      ..+......+. +.|.+. ..+.+.+..+.......++..+++.+.|+++||  ||+.+..+..+
T Consensus       211 ~~~~~~~~~~~-~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~  274 (381)
T PRK03633        211 ISGIVLGSLYG-LMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFV  274 (381)
T ss_pred             HHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHH
Confidence            22222222222 223332 334555677888888889999999999999999  55555444433

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.86  E-value=8.5e-20  Score=170.25  Aligned_cols=248  Identities=13%  Similarity=0.052  Sum_probs=166.9

Q ss_pred             hhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHH
Q 020422           49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASI  127 (326)
Q Consensus        49 ~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~  127 (326)
                      .+.++++.+........+.......+++++.|+++||+|||+++..+.++.++..... ..++++.++..|++.|++.+.
T Consensus        16 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~   95 (377)
T PRK11102         16 VIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAA   95 (377)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            3344554443333333566667778889999999999999999999998887776654 678888889999999999999


Q ss_pred             HHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHH
Q 020422          128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT  207 (326)
Q Consensus       128 ~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~  207 (326)
                      .++...+++.++.          |+++|+++.++.+....+|..+|+.+++.+...     .+||.. |.+...+.++..
T Consensus        96 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~-~~~~~~~~~~~~  159 (377)
T PRK11102         96 ASVVINALMRDMF----------PKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW-----FSWHAI-FWVLALAAILAA  159 (377)
T ss_pred             HHHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cChHHH-HHHHHHHHHHHH
Confidence            9888888888886          788999999999999999999999998777543     468773 444444444433


Q ss_pred             H-HHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc-cccCcch
Q 020422          208 I-LMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSG  285 (326)
Q Consensus       208 i-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~  285 (326)
                      + ..+++||++++++++        +.+.++..++..+.+++++.+...............+....+..+.. .+.+.++
T Consensus       160 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~  231 (377)
T PRK11102        160 ALVFFFIPETLPKERRQ--------PFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQN  231 (377)
T ss_pred             HHHHHhCCccCcccccC--------CCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHH
Confidence            3 345667654322111        11112223344466778877654433222211111111111222222 3556678


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHH
Q 020422          286 VGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLV  320 (326)
Q Consensus       286 ~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~  320 (326)
                      .+......+++..++..+.|++.||  ||+.+..+.+
T Consensus       232 ~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~  268 (377)
T PRK11102        232 FGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLW  268 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            8999999999999999999999999  6665555443

>TIGR00897 2A0118 polyol permease family

Probab=99.86  E-value=1.8e-19  Score=170.03  Aligned_cols=237  Identities=11%  Similarity=0.100  Sum_probs=146.2

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh----h-hhhhHHHHHHHHHhhhh
Q 020422           50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN----L-FPSWYTMVPASLYLGFA  124 (326)
Q Consensus        50 l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~----~-~~~~~~l~~~r~l~G~g  124 (326)
                      +.++.+.+.+......+....++.+++++.|++.||+|||+++..+..++++..+..    . .++++.++..|.+.|++
T Consensus        39 ~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g  118 (402)
T TIGR00897        39 FLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLG  118 (402)
T ss_pred             HHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcc
Confidence            334444333222223455666778889999999999999999999988877655432    2 35788888899999999


Q ss_pred             hHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhH-HHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHH
Q 020422          125 ASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQ-FVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVI  203 (326)
Q Consensus       125 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~-~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~  203 (326)
                      .+...+....++.++.          |+++||+++|++..+.+.|. .+|++++..+...     .+|+...+ ......
T Consensus       119 ~~~~~~~~~~~~~~~~----------~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~-----~g~~~~~~-~~~~~~  182 (402)
T TIGR00897       119 YPLFAYSFLVWVVYNT----------KQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA-----FGEMNTLW-SALAFV  182 (402)
T ss_pred             hHHHHhHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cchHHHHH-HHHHHH
Confidence            9887777666777765          78899999999999999986 5788887665433     34433222 222222


Q ss_pred             HHHHHHH-HhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc-ccc
Q 020422          204 TLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PAL  281 (326)
Q Consensus       204 ~l~~il~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~~  281 (326)
                      .++.++. ++.++++++++++ +      +.+..+..+...+.+|+|+++......+...... +....+.|.+.+ .+.
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~g~  254 (402)
T TIGR00897       183 LTGGVIALFSNKDIFTPQHMQ-T------REKFSELGKAATILFTNPNVLLGGMVRIINTIGL-FGFAVFLPMFVAELGF  254 (402)
T ss_pred             HHHHHHHHhccCCCCCccccc-C------CcchhhHHHHHHHHHcChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence            2223333 3344432211111 0      0011111122335678888876554433222221 111123344432 345


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          282 GVSGVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       282 ~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      +.++.+......+++..+++++.|+++||
T Consensus       255 s~~~~~~~~~~~~~~~~ig~~~~g~l~dr  283 (402)
T TIGR00897       255 STSEWLQIWGTFFFTNIVFNVIFGIVGDK  283 (402)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55567777788889999999999999999

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.86  E-value=1.2e-19  Score=174.77  Aligned_cols=249  Identities=11%  Similarity=0.011  Sum_probs=151.6

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-h------------hhhhHHHHHHHHHhhhhhHHHHh
Q 020422           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L------------FPSWYTMVPASLYLGFAASIIWV  130 (326)
Q Consensus        64 ~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~------------~~~~~~l~~~r~l~G~g~g~~~~  130 (326)
                      ..+..+++..+++++.|+++||+|||++++.+.+++.+..+.. +            .+++..++++|+++|++.|..++
T Consensus        60 ~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~  139 (479)
T PRK10077         60 CVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASM  139 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhh
Confidence            4566777888999999999999999999999988876655432 2            12356778999999999999999


Q ss_pred             hhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC---CCCCCchhHHHHHHHHHHHHHH
Q 020422          131 GEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLLFIVFLGVITLGT  207 (326)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~---~~~~~wr~~~f~~~~~~~~l~~  207 (326)
                      ...++++|++          |+++||+++++...+..+|..++++++..+.....   ....+||+. |++.++..++..
T Consensus       140 ~~~~~i~e~~----------~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~-f~~~~~~~~~~~  208 (479)
T PRK10077        140 LSPMYIAEIA----------PAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYM-FASEAIPALLFL  208 (479)
T ss_pred             HHHHHHHhhC----------ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHH-HHHHHHHHHHHH
Confidence            9999999997          88999999999998888998888777665543211   124689874 545555555555


Q ss_pred             HHHHhccCCccc----ccccccc-ccch--hhchHHHHHHHHHHhhh-----cchhHHHHHHHHHh-----hHHHHH---
Q 020422          208 ILMCFLRKEEDK----GEKETAD-ASVN--FYSYLVSLSKSITTLLA-----DVRMLLIIPLFAYS-----GLQQAF---  267 (326)
Q Consensus       208 il~~~l~~~~~~----~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~-----g~~~~~---  267 (326)
                      +..+++||+++.    .++++.+ ..++  +....++..++..+..+     .++.+......+..     .+....   
T Consensus       209 ~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (479)
T PRK10077        209 MLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGIN  288 (479)
T ss_pred             HHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChh
Confidence            556778886542    1111000 0000  00000111111111111     11111111111111     111110   


Q ss_pred             hhhccccccc-ccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHhh
Q 020422          268 VWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFHL  323 (326)
Q Consensus       268 ~~~~~~~~~~-~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~~  323 (326)
                      ....+.|.+. ..+.+.+...+.....+++..+++++.|+++||  ||++++.+.++..
T Consensus       289 ~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~  347 (479)
T PRK10077        289 VVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMA  347 (479)
T ss_pred             HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHH
Confidence            0111223332 223333445666677888899999999999999  7877777765544

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.86  E-value=3.1e-20  Score=172.58  Aligned_cols=244  Identities=11%  Similarity=0.050  Sum_probs=161.6

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHH
Q 020422           50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASII  128 (326)
Q Consensus        50 l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~  128 (326)
                      ++++++.+........+...+...+++++.|+++||+|||+++..+.+++++..... +.++++.++++|++.|++.+..
T Consensus        20 ~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~   99 (399)
T TIGR00893        20 LQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPF   99 (399)
T ss_pred             HHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh
Confidence            344444333332334566667778889999999999999999999998887776664 6789999999999999999999


Q ss_pred             HhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHH
Q 020422          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI  208 (326)
Q Consensus       129 ~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~i  208 (326)
                      ++....++.|+.          |+++|++++++.....++|..+|+.+++.+...     .+||+. |....+..++..+
T Consensus       100 ~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~-~~~~~~~~~~~~~  163 (399)
T TIGR00893       100 FPGIILIVASWF----------PASERATAVSIFNSAQGLGGIIGGPLVGWILIH-----FSWQWA-FIIEGVLGIIWGV  163 (399)
T ss_pred             hhHHHHHHHHhC----------CHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh-----CCchHH-HHHHHHHHHHHHH
Confidence            999999999987          888999999999999999999999998876553     368873 4444444444333


Q ss_pred             H-HHhccCCcccccccc--cc-c-cch------hhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccccc
Q 020422          209 L-MCFLRKEEDKGEKET--AD-A-SVN------FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV  277 (326)
Q Consensus       209 l-~~~l~~~~~~~~~~~--~~-~-~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~  277 (326)
                      + .++.||++++++...  ++ . ...      ++.+.++...+..+.+++|+++......+.......... .+.+.+.
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  242 (399)
T TIGR00893       164 LWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFL-TWFPTYL  242 (399)
T ss_pred             HhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHH-HHHHHHH
Confidence            3 344555443211100  00 0 000      000000011223456778887766554443333322222 2233332


Q ss_pred             cc--ccCcchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          278 TP--ALGVSGVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       278 ~~--~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      .+  +.+..+.++.....++++.++.++.|+++||
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  277 (399)
T TIGR00893       243 VQERGLSILEAGFMASLPGIVGFIGMILGGRLSDL  277 (399)
T ss_pred             HHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22  3445577888888899999999999999999

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.86  E-value=2.9e-19  Score=168.30  Aligned_cols=274  Identities=13%  Similarity=0.070  Sum_probs=162.4

Q ss_pred             ccccCccccchhHHHHHHHHHHHHHHHHhHH----hhhhhhcCCCCch-----hHHHHHHHHHHhhhhhhHHHHHHHhch
Q 020422           18 LQVLTPKNYTRDVHILSCAFLLIFLAYGAAQ----NLETTVNTEGNLG-----TISLGILYTSFTCFSLVASLVVRVLGS   88 (326)
Q Consensus        18 ~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~----~l~~~l~~~~~~g-----~~~~~~~~~~~~~~~l~~g~l~d~~Gr   88 (326)
                      ++|.||++   +...+.++.++...++....    .+.++++.+.+..     ....++.++...+++++.|+++||+||
T Consensus         7 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~   83 (408)
T PRK09874          7 DTPINWKR---NLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGR   83 (408)
T ss_pred             CCCCcHHH---HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCc
Confidence            56677755   44444444444433333222    2333443332211     122455566778889999999999999


Q ss_pred             hhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHH
Q 020422           89 KNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFA  167 (326)
Q Consensus        89 r~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~  167 (326)
                      |+++..+.+..++..... ..++++.+++.|++.|++.+ ..+....++.+..          |+++|+++.|+...+..
T Consensus        84 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~  152 (408)
T PRK09874         84 KIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQV----------PRNKSGWALGTLSTGGV  152 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhc----------CHhhhhHHHHHHHHHHH
Confidence            999999888777665554 67788889999999999865 4455556666654          78899999999999999


Q ss_pred             HhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHH-HHhccCCccccccccccccchhhchHHHHHHHHHHhh
Q 020422          168 SHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLL  246 (326)
Q Consensus       168 ~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (326)
                      .|..+|+.+++.+...     .+||.. |++..++.++..++ .+++||+.++.+++       +..+    .++..+.+
T Consensus       153 ~g~~~~~~~~~~l~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~  215 (408)
T PRK09874        153 SGALLGPLAGGLLADS-----YGLRPV-FFITASVLFLCFLVTLFCIRENFQPVSKK-------EMLH----MREVVTSL  215 (408)
T ss_pred             HHHHHHHHHHHHHHHH-----hCHHHH-HHHHHHHHHHHHHHHHHHhccCcccccch-------hhhH----HHHHHHhC
Confidence            9999999998877543     368763 54555544444333 34566643211110       0111    12334566


Q ss_pred             hcchhHHHH-HHHHHhhHHHHHhhhcccccccccccCcc----hHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHH
Q 020422          247 ADVRMLLII-PLFAYSGLQQAFVWAEFTKEIVTPALGVS----GVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPL  319 (326)
Q Consensus       247 ~~~~~~~l~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~  319 (326)
                      ++++.+... ...+............++.+..+...+.+    ..+......+++..++....|+++||  ||+.+..+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~  295 (408)
T PRK09874        216 KNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITAL  295 (408)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHH
Confidence            777765422 21111111111111112211111111112    23555566788888899999999999  666665555


Q ss_pred             HHh
Q 020422          320 VFH  322 (326)
Q Consensus       320 ~~~  322 (326)
                      ++.
T Consensus       296 ~~~  298 (408)
T PRK09874        296 IFS  298 (408)
T ss_pred             HHH
Confidence            443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.85  E-value=4e-19  Score=165.81  Aligned_cols=232  Identities=9%  Similarity=-0.012  Sum_probs=145.5

Q ss_pred             hhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHhh-hhhhHHHHHHHHHhhhhhHH
Q 020422           49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANL-FPSWYTMVPASLYLGFAASI  127 (326)
Q Consensus        49 ~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~~-~~~~~~l~~~r~l~G~g~g~  127 (326)
                      .++++++.+.+.-....+..+.++++++++.|+++||+|||+++..+............ .+++..++..|+++|+|++.
T Consensus        16 ~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~   95 (368)
T TIGR00903        16 LVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF   95 (368)
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH
Confidence            55566665533322335677788899999999999999999887655444433333233 37899999999999999996


Q ss_pred             HHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHH
Q 020422          128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT  207 (326)
Q Consensus       128 ~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~  207 (326)
                      . ......++++.          |+++|++++++...+..+|..++++++..+.+.     .+||.. |.+.++++++..
T Consensus        96 ~-~~~~~~~~~~~----------~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~-----~gWr~~-f~~~~~l~~~~~  158 (368)
T TIGR00903        96 L-LNAFAPAASQI----------REERRDLVISLLSFAMYLGIIFALAAGLKIYTA-----GGLQLL-IIPIAAVAAAGI  158 (368)
T ss_pred             H-HHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cchHHH-HHHHHHHHHHHH
Confidence            4 44445567765          889999999999999999999999998887653     589974 544455554433


Q ss_pred             -HHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccccCcchH
Q 020422          208 -ILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGV  286 (326)
Q Consensus       208 -il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  286 (326)
                       +..+++||+++++++..      +..   +..++.++.+|||.++.+....++.........++.++.+.+.+.+.+ .
T Consensus       159 ~~~~~~lp~~p~~~~~~~------~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~  228 (368)
T TIGR00903       159 ILVLAALPALPFQAAEGF------GFK---DAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-A  228 (368)
T ss_pred             HHHHHHcCCCCCCCCCCc------chH---HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-H
Confidence             34467788654321110      000   111234567888888876655443322222223333333322234433 4


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          287 GGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       287 g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      +.......+++.++   .++++||
T Consensus       229 ~~~~~l~~~~g~~g---~~~~~d~  249 (368)
T TIGR00903       229 GDAVALAILAGLIG---VAVIPDR  249 (368)
T ss_pred             HHHHHHHHHHHHHH---HHHhhHH
Confidence            54455545544554   4677776

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.85  E-value=5.3e-19  Score=166.10  Aligned_cols=244  Identities=11%  Similarity=0.055  Sum_probs=161.4

Q ss_pred             hhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHH
Q 020422           49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASI  127 (326)
Q Consensus        49 ~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~  127 (326)
                      .+.++++.+........+.....+.+++++.|+++||+|||++++.+.+++++..... ..+++..+++.|+++|++.+.
T Consensus        28 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~  107 (392)
T PRK10473         28 RIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGC  107 (392)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhH
Confidence            3344444333222233555666778889999999999999999999988887766654 677888888899999999999


Q ss_pred             HHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHH
Q 020422          128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT  207 (326)
Q Consensus       128 ~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~  207 (326)
                      .++...+++.+..          |+++|+++.++.+....++..+|++++..+...     .+||.. |.+..++.++..
T Consensus       108 ~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~-----~g~~~~-~~~~~~~~~i~~  171 (392)
T PRK10473        108 CYVVAFAILRDTL----------DDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK-----FPWQSL-FYTMAAMGILVL  171 (392)
T ss_pred             HHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----cChHHH-HHHHHHHHHHHH
Confidence            9988888888886          788999999999999999999999888776543     468863 444444444433


Q ss_pred             H-HHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCcc
Q 020422          208 I-LMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVS  284 (326)
Q Consensus       208 i-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~  284 (326)
                      + ..+++||++++++++        +.+.   .++..+.+++++++...............+. .+.+.+..  .+.+..
T Consensus       172 ~~~~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~  239 (392)
T PRK10473        172 LLSLFILKETRPARAPA--------ASSK---PRENSESLLNRFFLSRLVITTLSVTVILTFV-NTSPVLLMEQMGFSRG  239 (392)
T ss_pred             HHHHHHcCCCCCcccCC--------ccch---HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-HhCHHHHHHHcCCCHH
Confidence            3 345567654322111        0011   1222355677776653332221111111111 22232222  245556


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHH
Q 020422          285 GVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLV  320 (326)
Q Consensus       285 ~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~  320 (326)
                      +.+..+...+++..++..+.|++.||  ||+.+..+.+
T Consensus       240 ~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~  277 (392)
T PRK10473        240 EYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQV  277 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            77888888999999999999999999  6666665554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.85  E-value=4.6e-20  Score=176.04  Aligned_cols=138  Identities=14%  Similarity=0.065  Sum_probs=106.8

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hh---hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHH
Q 020422           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF---PSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (326)
Q Consensus        64 ~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~---~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~  139 (326)
                      ..+..+++..+++++.|+++||+|||++++.+.+++++..+.. ..   .+++.+++.|++.|++.+..++....+++++
T Consensus        76 ~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~  155 (481)
T TIGR00879        76 VVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEI  155 (481)
T ss_pred             HHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHcc
Confidence            4567777888999999999999999999999998887766543 32   2445788899999999999999888889888


Q ss_pred             hHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHH---HHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 020422          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT---LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~---~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~  216 (326)
                      .          |+++|+++.+++..+..+|..+|++++   ....     ...+||+. |++.....++..+..+++||+
T Consensus       156 ~----------~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~-----~~~~w~~~-f~~~~~~~~~~~~~~~~l~~~  219 (481)
T TIGR00879       156 A----------PKALRGALTSLYQLAITFGILVAYGFGSGKVSLN-----NTLGWRIP-LGLQLIPAGLLFLGLFFLPES  219 (481)
T ss_pred             C----------ChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCC-----CCccHHHH-HHHHHHHHHHHHHHHhcCCCC
Confidence            6          889999999999999999999999887   2221     13589874 444444444444555677775


Q ss_pred             c
Q 020422          217 E  217 (326)
Q Consensus       217 ~  217 (326)
                      +
T Consensus       220 ~  220 (481)
T TIGR00879       220 P  220 (481)
T ss_pred             h
Confidence            4

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03699 putative transporter; Provisional

Probab=99.85  E-value=2.9e-19  Score=168.26  Aligned_cols=261  Identities=14%  Similarity=0.021  Sum_probs=160.8

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHhhhhhhcCCCCch----hHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHH
Q 020422           28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLG----TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (326)
Q Consensus        28 ~~~~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~g----~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~  103 (326)
                      |-.+...+++++........+.+.+++.++.+.+    ....+...+++.+++++.|++.||+|||+++..+.++.++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~   86 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAV   86 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4444554554444333344444334443332222    223455667788889999999999999999999988877766


Q ss_pred             HHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          104 AAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       104 ~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                      ... +.++++.++++|.++|++.|..++....++.+..          |+++|+++.+.......+|..+++.+...+..
T Consensus        87 ~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  156 (394)
T PRK03699         87 AGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVY----------EGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA  156 (394)
T ss_pred             HHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhc----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            654 6788988999999999999988887778888875          77889999998888888888888888766543


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhh
Q 020422          183 DDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSG  262 (326)
Q Consensus       183 ~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  262 (326)
                      .    ..+||+. |.+..++.++..++.++.+.|+.+++++ +    +++..    .    +...+++++......+...
T Consensus       157 ~----~~gw~~~-f~~~~~~~~~~~~~~~~~~~p~~~~~~~-~----~~~~~----~----~~~~~~~~~~~~~~~~~~~  218 (394)
T PRK03699        157 R----SIEWYWV-YACIGLVYVAIFILTLFSEFPALGKHAP-K----ADKPV----A----KEKWGIGVLFLAIAALLYI  218 (394)
T ss_pred             c----cccHHHH-HHHHHHHHHHHHHHHHhcCCccccccCc-c----ccCcc----c----cccCChHHHHHHHHHHHHH
Confidence            2    2479874 4444444433333333322222111111 0    00000    0    1112344444333322222


Q ss_pred             HHHHHhhhcccccccc--cccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhH
Q 020422          263 LQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGL  317 (326)
Q Consensus       263 ~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~  317 (326)
                      ....... .+.|.+..  .+++.++.+.....+.++..+|.++.|+++||  ||+.+..
T Consensus       219 ~~~~~~~-~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~  276 (394)
T PRK03699        219 LAQLTFI-SWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTV  276 (394)
T ss_pred             HHHHHHH-HHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHH
Confidence            2111112 23344432  25566678888888889999999999999999  5444443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.85  E-value=5.3e-19  Score=170.34  Aligned_cols=254  Identities=9%  Similarity=-0.037  Sum_probs=166.0

Q ss_pred             hhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHH
Q 020422           51 ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIW  129 (326)
Q Consensus        51 ~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~  129 (326)
                      .++++.+.+...+..+....+..++.++.|++.||+|||+++..+.+++++..... ..+|+..+++.|+++|++.+..+
T Consensus        29 ~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~  108 (485)
T TIGR00711        29 AGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLI  108 (485)
T ss_pred             HHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHH
Confidence            33444333322333556666778888999999999999999999999888877654 78899999999999999999999


Q ss_pred             hhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHH-
Q 020422          130 VGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI-  208 (326)
Q Consensus       130 ~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~i-  208 (326)
                      +...+++.++.          |+++|+++.+++.....+|..+|+.+++.+...     .+||+. |++...+.++..+ 
T Consensus       109 ~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~~w~~~-f~~~~~~~~~~~~~  172 (485)
T TIGR00711       109 PLSFSTLLNIY----------PPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN-----YHWRWI-FLINVPIGIIVVVV  172 (485)
T ss_pred             HHHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC-----cCceeh-hhhhhHHHHHHHHH
Confidence            99899999987          888999999999999999999999998877543     479874 4444444444333 


Q ss_pred             HHHhccCCccccccccccc----------------cchhhchHH---------------------HHHH-----HHHHhh
Q 020422          209 LMCFLRKEEDKGEKETADA----------------SVNFYSYLV---------------------SLSK-----SITTLL  246 (326)
Q Consensus       209 l~~~l~~~~~~~~~~~~~~----------------~~~~~~~~~---------------------~~~~-----~~~~~~  246 (326)
                      ..+++||++++++++.+..                ...++..+.                     .+.+     ...+.+
T Consensus       173 ~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (485)
T TIGR00711       173 AFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLF  252 (485)
T ss_pred             HHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHH
Confidence            3345665433211110000                000000000                     0000     012456


Q ss_pred             hcchhHHHHHHHHHhhHHHHHhhhccccccccc--ccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHH
Q 020422          247 ADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVF  321 (326)
Q Consensus       247 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~  321 (326)
                      |+++++......+..++.... ...+.|.+..+  +.+..+.++.+...+++..+++++.|++.||  ||+++..|.++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~  330 (485)
T TIGR00711       253 KYRNFTIGCVYMSLLGLGLYG-SFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLIL  330 (485)
T ss_pred             cCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence            677766654433333322111 11233433332  4556678999999999999999999999999  66666666543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00895 2A0115 benzoate transport

Probab=99.84  E-value=5e-19  Score=165.26  Aligned_cols=233  Identities=14%  Similarity=0.081  Sum_probs=146.3

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      .+....+..+++++.|+++||+|||+++..+.++.++..... ..++++.+++.|++.|++.+..++...+++.++.   
T Consensus        58 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---  134 (398)
T TIGR00895        58 FSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYA---  134 (398)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHc---
Confidence            345556667888999999999999999999988777766554 6788888889999999999999999899999986   


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHH-HHHHHHHhccCCccc---
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVIT-LGTILMCFLRKEEDK---  219 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~-l~~il~~~l~~~~~~---  219 (326)
                             |+++|+++.++...+..+|..+|+.+++.+...     .+|+.. |.+.+++.. ...+...++||+++.   
T Consensus       135 -------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (398)
T TIGR00895       135 -------PKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV-----FGWRSL-FYVGGIAPLLLLLLLMRFLPESIDFLVS  201 (398)
T ss_pred             -------CHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc-----ccceee-hhhhhhHHHHHHHHHHHhCCCCChHHHh
Confidence                   778999999999999999999999988777543     468763 433333333 333445567765421   


Q ss_pred             cccccc---------------cccchhhchHHHHHHHHHHhhhc----chhHHHHHHHHHhhHHHHHhhhccccccc-cc
Q 020422          220 GEKETA---------------DASVNFYSYLVSLSKSITTLLAD----VRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TP  279 (326)
Q Consensus       220 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~~~~~~~~~~~~-~~  279 (326)
                      ++++..               +...++.....+..++..+.+++    ++.+.+....+.......... .+.|.+. ..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  280 (398)
T TIGR00895       202 KRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLT-NWLPKLMVEL  280 (398)
T ss_pred             cCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHc
Confidence            100000               00000000000011122222222    222222111111111111111 2233322 23


Q ss_pred             ccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhH
Q 020422          280 ALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLL  314 (326)
Q Consensus       280 ~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~  314 (326)
                      +.+.++.+......+++..++.++.|+++||  ||+.
T Consensus       281 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  317 (398)
T TIGR00895       281 GFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVT  317 (398)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence            4556678888888999999999999999999  5533

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.84  E-value=1.3e-18  Score=168.51  Aligned_cols=276  Identities=11%  Similarity=0.037  Sum_probs=169.7

Q ss_pred             cccCccccchhHHHHHHHHHHHHHHHHhHHhhhhhhcCCCCchhHHHHHH-HHHH-hhhhhhHHHHHHHh-----chhhH
Q 020422           19 QVLTPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGIL-YTSF-TCFSLVASLVVRVL-----GSKNA   91 (326)
Q Consensus        19 ~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~-~~~~-~~~~l~~g~l~d~~-----Grr~~   91 (326)
                      +|+||.+.+|...++.+++............+...+. +.+.+....+.. .... .+++++.++++||+     |||+.
T Consensus         4 ~~l~~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~   82 (491)
T PRK11010          4 QYLRIFQQPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRG   82 (491)
T ss_pred             hHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCchH
Confidence            4889999889888888876555444433333333332 323333222222 1122 25789999999999     99986


Q ss_pred             -HHHHhHHHHHHHHHh-h---hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHH
Q 020422           92 -LILGTTGYWLFVAAN-L---FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMF  166 (326)
Q Consensus        92 -l~~g~~~~~~~~~~~-~---~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~  166 (326)
                       ++.+.+..++..... +   .++++.+.+.+++.|++.+...+...++..|+.          |++|||++.++...+.
T Consensus        83 ~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~----------~~~~rg~~~~i~~~g~  152 (491)
T PRK11010         83 WLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVL----------PAEERGAGAAISVLGY  152 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------ChhhhHHHHHHHHHHH
Confidence             556666555544332 3   246777888899999999998888888999986          7899999999999999


Q ss_pred             HHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhchHHHHHHHHHHhh
Q 020422          167 ASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLL  246 (326)
Q Consensus       167 ~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (326)
                      .+|..+|+.++..+...    ..+||.. |++.++..++..+..+++||++++++++ +    +.+.+..   ++..+.+
T Consensus       153 ~lG~llg~~l~~~l~~~----~~GWr~~-f~i~a~l~ll~~l~~~~~~e~~~~~~~~-~----~~~~~~~---~~l~~~~  219 (491)
T PRK11010        153 RLAMLVSGGLALWLADR----YLGWQGM-YWLMAALLIPCIIATLLAPEPTDTIPVP-K----TLEQAVV---APLRDFF  219 (491)
T ss_pred             HHHHHHHHHHHHHHHhc----ccCHHHH-HHHHHHHHHHHHHHHHhcCCCccccccc-c----chhhhHH---HHHHHHH
Confidence            99999998888777542    1479874 5555555555555555677764321111 0    0011111   2233455


Q ss_pred             hcchhHHHHHHHHHhhHHHHHhhhccccccc-ccccCcchHHHHHHHH-HHHHHHHHHHhhhhhhh--hhhHHhHH
Q 020422          247 ADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV-TPALGVSGVGGAMAVY-GAFDAISLLGFATFFSV--HSLLVGLP  318 (326)
Q Consensus       247 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~-gi~~~~g~~~~G~l~Dr--R~~~~~~g  318 (326)
                      ++++.+......+.......+.....++.+. ..+.+.++.++..... .++.++|.+++|+++||  ||+.++.+
T Consensus       220 ~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~  295 (491)
T PRK11010        220 GRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIF  295 (491)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            6666654433322222222222222333332 2355667788877544 46888999999999999  54444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.84  E-value=2.3e-19  Score=164.91  Aligned_cols=227  Identities=15%  Similarity=0.143  Sum_probs=147.0

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH-hhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        64 ~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      ..+.......+++++.|+++||+|||+++..+.++.++.... .++++.+.++++|++.|++.+..+++...++.++.  
T Consensus        37 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~--  114 (352)
T PF07690_consen   37 LFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWF--  114 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccc--
Confidence            355566677888999999999999999999999888777433 34477778899999999999999999999999986  


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHH-HHhccCCccccc
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKGE  221 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il-~~~l~~~~~~~~  221 (326)
                              |+++|+++.++.....++|..+|+.+++.+.+.     .+||+. |++.+++.++..++ .+++++++++++
T Consensus       115 --------~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-----~~~~~~-~~~~~~~~~~~~il~~~~~~~~~~~~~  180 (352)
T PF07690_consen  115 --------PPEERGRAFGILSAGFSLGSILGPLLGGFLISY-----FGWRWA-FLISAILSLIAAILFILFLPEPPPPRE  180 (352)
T ss_dssp             --------CTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-----CHHCCH-HHHHHHHHHHHHHHHHCCC---STTTT
T ss_pred             --------hhhhhhhccccccchhhhhhhcccchhhhhhhc-----cccccc-cccccchhhhhhhhHhhhhhhcccccc
Confidence                    778999999999999999999999998887633     468874 55555555555443 244555443322


Q ss_pred             cccccccchhhchHHHHHHH-HHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccC-cchHHHHHHHHHHHH
Q 020422          222 KETADASVNFYSYLVSLSKS-ITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALG-VSGVGGAMAVYGAFD  297 (326)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~-~~~~g~~~~~~gi~~  297 (326)
                      ++.++.++   ...++.+++ ..+..+++.++......+..++...... .+.+.+..  .+.+ ..+.+..+...++..
T Consensus       181 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  256 (352)
T PF07690_consen  181 RESPKESE---SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFS-FFLPLYLQEVLGFSGPSQAGLLFSIFGIVG  256 (352)
T ss_dssp             --SSTTTT-----HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHH-HHHHHHCCHHHHCCTHHHHHHHHHHHHHHH
T ss_pred             cccccccc---cccccccccccccccccchhhhhhhhhhHHHHHHHHhh-cccchhhhhccCCCHHHHHHHHHHHHHHHH
Confidence            21111000   000111111 2233445555422222222222211111 22233222  2344 456788888889999


Q ss_pred             HHHHHHhhhhhhh
Q 020422          298 AISLLGFATFFSV  310 (326)
Q Consensus       298 ~~g~~~~G~l~Dr  310 (326)
                      .+++.+.|+++||
T Consensus       257 ~~~~~~~~~l~~~  269 (352)
T PF07690_consen  257 IIGSLLAGRLSDR  269 (352)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999999

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.84  E-value=7.3e-19  Score=168.52  Aligned_cols=227  Identities=10%  Similarity=-0.033  Sum_probs=145.9

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hh----hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHH
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF----PSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~----~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~  139 (326)
                      .+...+.+++++++.|+++||+|||++++.+.+++++..... +.    ++++.++..|++.|++.|..++.....+.++
T Consensus        69 ~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~  148 (452)
T PRK11273         69 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW  148 (452)
T ss_pred             HHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence            566667778899999999999999999999998877766543 32    3677788899999999998888777777776


Q ss_pred             hHhhhhhcCCCcccchhhHHHHHHHHHHHhHH-HHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHH-HHHHHHhccCCc
Q 020422          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQF-VGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTILMCFLRKEE  217 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~-~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l-~~il~~~l~~~~  217 (326)
                      +          |+++||+++|+++.+.++|.. .+++++..+...     .+||+. |++..++.++ ..+..+++||++
T Consensus       149 ~----------~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----~gw~~~-f~i~~~~~~~~~~l~~~~~~~~~  212 (452)
T PRK11273        149 W----------SQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF-----NDWHAA-LYMPAFAAILVALFAFAMMRDTP  212 (452)
T ss_pred             C----------ChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-----ccHHHH-HHHHHHHHHHHHHHHHHHccCCH
Confidence            5          788999999999888888864 455544333221     378874 5444444444 334456677754


Q ss_pred             ccc---cc-c-ccccc----c--hhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCcc
Q 020422          218 DKG---EK-E-TADAS----V--NFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVS  284 (326)
Q Consensus       218 ~~~---~~-~-~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~  284 (326)
                      ++.   ++ + .++.+    .  .++.+.++.+.  ...+|++.++......++......... .+.|.+..  .+++.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~P~~l~~~~g~s~~  289 (452)
T PRK11273        213 QSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFM--QYVLPNKLLWYIAIANVFVYLLRYGIL-DWSPTYLKEVKHFALD  289 (452)
T ss_pred             hhcCCCChhhhhhccccccccccCCCccHHHHHH--HHHHcChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCHH
Confidence            421   00 0 00000    0  00111222111  135678888775544333332222222 23444433  245566


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          285 GVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       285 ~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      ..+.....++++..++.++.|+++||
T Consensus       290 ~~~~~~~~~~~~~~~g~~~~G~l~dr  315 (452)
T PRK11273        290 KSSWAYFLYEYAGIPGTLLCGWMSDK  315 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888889999999999999998

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.84  E-value=1.4e-18  Score=163.60  Aligned_cols=229  Identities=10%  Similarity=0.013  Sum_probs=149.5

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      .+...+.+++.+++.|+++||+|||++++.+.+++++..+.. ..++.   +..|+++|++.+..+|+..+++.|+.   
T Consensus        44 ~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~---  117 (393)
T PRK11195         44 QMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELL---  117 (393)
T ss_pred             HHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence            455567788899999999999999999999998887766543 44443   56899999999999999999999997   


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccc
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKE  223 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~  223 (326)
                             |+++|+++.|+.....+.|..+||.+++.+...      .|+.. +.+...+..++.+..+.+||+++++++.
T Consensus       118 -------~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~------~~~~~-~~i~~~~~~~~~~~~~~l~~~~~~~~~~  183 (393)
T PRK11195        118 -------PGEKLVKANGWMEGSTIAAILLGTVLGGALADP------HAEAA-LAVCALIYLLAALFNLFIPRLGARRPGQ  183 (393)
T ss_pred             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHHHHhcCCCCccccccc
Confidence                   889999999999999999999999999888642      24442 3333333333444446677754322111


Q ss_pred             cccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHh-hHHHHH--hhhcccccccccccCcchHHHHHHHHHHHHHHH
Q 020422          224 TADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYS-GLQQAF--VWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIS  300 (326)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~gi~~~~g  300 (326)
                      +.    +.....++...+..+.+++|.+.......... +.....  ....|.+..  .+.+..+.|+.+...+++..++
T Consensus       184 ~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--lg~s~~~~G~~~~~~~~g~i~g  257 (393)
T PRK11195        184 SW----NPIALLRDFFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVA--LGITLNQPAYLQAVVAIGIAVG  257 (393)
T ss_pred             CC----CHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCChhHHHHHHHHHHHHHHHH
Confidence            00    00001111112223456777765433222111 111111  111122221  2455668899999999999999


Q ss_pred             HHHhhhhhhh--hhhHHhHHH
Q 020422          301 LLGFATFFSV--HSLLVGLPL  319 (326)
Q Consensus       301 ~~~~G~l~Dr--R~~~~~~g~  319 (326)
                      +++.+++.||  +++.+..|.
T Consensus       258 ~~~~~~l~~~~~~~~~~~~g~  278 (393)
T PRK11195        258 AGAAARLVTLETVLRVLPAGI  278 (393)
T ss_pred             HHHHHHHhcCCcccchHHHHH
Confidence            9999999998  444444443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.84  E-value=1.3e-19  Score=167.92  Aligned_cols=244  Identities=12%  Similarity=0.027  Sum_probs=157.2

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHH
Q 020422           50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASII  128 (326)
Q Consensus        50 l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~  128 (326)
                      ++++++.+........+...+...+++++.|+++||+|||+++..+.++.++..+.. +.++++.+++.|++.|++.+..
T Consensus        21 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  100 (379)
T TIGR00881        21 LVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMG  100 (379)
T ss_pred             HHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Confidence            334444333333333566667778889999999999999999999998887776654 6789999999999999999999


Q ss_pred             HhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHH-HHHHHHhcCCCCCCCCchhHHHHHHHHHHHH-H
Q 020422          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN-LITLAVLKDDKGGSTSGTTLLFIVFLGVITL-G  206 (326)
Q Consensus       129 ~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~-li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l-~  206 (326)
                      ++...+++.++.          |+++|+++.++...+..+|..+|+ +++..+...     .+||.. |.+..++.++ +
T Consensus       101 ~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~  164 (379)
T TIGR00881       101 WPPCGRTVTKWF----------SRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-----YSWHWV-FIVPGIIAIIVS  164 (379)
T ss_pred             CCchHHHHHHhc----------CHhhheeeEeehhccchhHHHHHHHHHHHHHHhc-----CCchhH-HHHHHHHHHHHH
Confidence            999888999987          788999999999999999999998 455554332     478874 4444444433 3


Q ss_pred             HHHHHhccCCccccc---ccc--ccc----cchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccccc
Q 020422          207 TILMCFLRKEEDKGE---KET--ADA----SVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV  277 (326)
Q Consensus       207 ~il~~~l~~~~~~~~---~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~  277 (326)
                      ++..++.+|++++++   .+.  .+.    .++++.+.........+.+++|.++.+....+.......... .+.+.+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  243 (379)
T TIGR00881       165 LICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGIL-DWSPLYL  243 (379)
T ss_pred             HHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            333445565433211   000  000    000000000000112345677887765544333322222222 2223332


Q ss_pred             c--cccCcchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          278 T--PALGVSGVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       278 ~--~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      .  .+.+..+.+......+++..++.++.|+++||
T Consensus       244 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r  278 (379)
T TIGR00881       244 TQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDK  278 (379)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence            2  24555678888889999999999999999997

>PRK11043 putative transporter; Provisional

Probab=99.83  E-value=4e-18  Score=160.57  Aligned_cols=232  Identities=11%  Similarity=0.029  Sum_probs=151.7

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHH
Q 020422           50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASII  128 (326)
Q Consensus        50 l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~  128 (326)
                      ++++++.+........++....+.+++++.|+++||+|||+++..+.++.++..... +.++++.+++.|+++|++.+..
T Consensus        32 i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~  111 (401)
T PRK11043         32 IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSA  111 (401)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHH
Confidence            344444433333334566677788999999999999999999999888777665544 6788888899999999999887


Q ss_pred             HhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHH
Q 020422          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI  208 (326)
Q Consensus       129 ~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~i  208 (326)
                      .+...+++.+..          |++++++..+.......++..+|+.+++.+...     .+||.. |.+..+..++..+
T Consensus       112 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-----~g~~~~-~~~~~~~~~~~~~  175 (401)
T PRK11043        112 AVIWQALVIDRY----------PAQKANRVFATIMPLVALSPALAPLLGAWLLNH-----FGWQAI-FATLFAITLLLIL  175 (401)
T ss_pred             HHHHHHHHHHhc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CChHHH-HHHHHHHHHHHHH
Confidence            776666676665          778888999988888889999999998777543     478874 4444444544444


Q ss_pred             HHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccccCcchHHH
Q 020422          209 LMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGG  288 (326)
Q Consensus       209 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~  288 (326)
                      +.++++|++++++++      ++    +   ++.++.+|+++++.....+.........+....+..+...+.+.++.++
T Consensus       176 ~~~~~~~~~~~~~~~------~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~  242 (401)
T PRK11043        176 PTLRLKPSKKARKQS------QD----A---LTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGL  242 (401)
T ss_pred             HHHHcCCCCCccccc------hH----H---HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHH
Confidence            445555533221110      01    1   1233556777766543322222111111111222222223455567788


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhh
Q 020422          289 AMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       289 ~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      .+....++..+|+.+.+++.||
T Consensus       243 ~~~~~~~~~~~g~~~~~~l~~r  264 (401)
T PRK11043        243 SYVPQTIAFLVGGYGCRAALQK  264 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888999999999999

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.83  E-value=4.4e-19  Score=170.50  Aligned_cols=227  Identities=9%  Similarity=-0.080  Sum_probs=153.1

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-h--hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhH
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~  141 (326)
                      .+..+.++.+++++.|+++||+|||+++..+.+++++..+.. .  .+++..+++.|+++|++.+..++....++.++. 
T Consensus        82 ~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~-  160 (465)
T TIGR00894        82 LSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWA-  160 (465)
T ss_pred             HHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcC-
Confidence            455666778889999999999999999999998887776553 2  345777888999999999999999999999986 


Q ss_pred             hhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH-hccCCcccc
Q 020422          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC-FLRKEEDKG  220 (326)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~-~l~~~~~~~  220 (326)
                               |+++|+++.|++..+.++|..+|+++.+.+....    .+||.. |.+.++..++..++++ +.+|++++.
T Consensus       161 ---------~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~----~gw~~~-f~i~~~~~~~~~~~~~~~~~~~p~~~  226 (465)
T TIGR00894       161 ---------PPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW----GGWPMI-FYVFGIVGCAWSLLWFVFPADDPSIH  226 (465)
T ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCCCee-hhhhhHHHHHHHHHHHHHhcCCcccC
Confidence                     8899999999999999999999999987775431    279874 5455555544433333 344433211


Q ss_pred             c-cccccc-------cchh-hchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccccccc--ccCcchHHHH
Q 020422          221 E-KETADA-------SVNF-YSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGA  289 (326)
Q Consensus       221 ~-~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~g~~  289 (326)
                      + .++++.       ++++ +.+.+   ....+.++++.++......+.......... .+.|.+..+  +.+..+.++.
T Consensus       227 ~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lp~~l~~~~g~s~~~~g~~  302 (465)
T TIGR00894       227 PCISKFEKKYINSSLQGQKGSTRQS---LPIKAIPKSLPVWAIWFAIFGHFWLYTILP-TYLPTFISWVLRVSGKENGLL  302 (465)
T ss_pred             CCCCHHHHHHHHhhcccccCCCCCC---CCHHHHhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcChHHhHHH
Confidence            1 100000       0000 00000   113356777887766554433322222222 233444322  4556678888


Q ss_pred             HHHHHHHHHHHHHHhhhhhhh
Q 020422          290 MAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       290 ~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      .....++..++.+++|+++||
T Consensus       303 ~~~~~~~~~i~~~~~g~l~d~  323 (465)
T TIGR00894       303 SSLPYLFAWLCSIFAGYLADF  323 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            888899999999999999997

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.83  E-value=6.2e-18  Score=158.96  Aligned_cols=233  Identities=11%  Similarity=0.026  Sum_probs=150.7

Q ss_pred             hhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHH
Q 020422           49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASI  127 (326)
Q Consensus        49 ~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~  127 (326)
                      .+.++++.+........+.....+.+++++.|+++||+|||+++..+.++..+..... ..++++.+++.|++.|++.+.
T Consensus        33 ~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~  112 (394)
T PRK11652         33 DMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGV  112 (394)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhH
Confidence            3444555444444444566677888899999999999999999999988877766654 678888899999999999988


Q ss_pred             HHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHH-H
Q 020422          128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-G  206 (326)
Q Consensus       128 ~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l-~  206 (326)
                      ..+....+..+..          ++++++++.+++..+..++..+|+.+++.+.+.     .+||.. |.+..+..++ .
T Consensus       113 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-----~g~~~~-f~~~~~~~~~~~  176 (394)
T PRK11652        113 GGVMARTLPRDLY----------EGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL-----FGWRAC-YLFLLLLGAGVT  176 (394)
T ss_pred             HHHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cChHHH-HHHHHHHHHHHH
Confidence            7766666666654          678899999999888899999999888777543     478874 4444443333 2


Q ss_pred             HHHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccccccc--ccCcc
Q 020422          207 TILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVS  284 (326)
Q Consensus       207 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~  284 (326)
                      .+..+++||+++++++         +.+.+   +...+.+++|+++......+.......... .+.+.+..+  +.+..
T Consensus       177 ~~~~~~~~~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~  243 (394)
T PRK11652        177 FSMARWMPETRPADAR---------RTRVL---ASYRTLLSNRRFNCYLLMLIGTLAGIAVFE-ACSGVLMGAVLGLSSM  243 (394)
T ss_pred             HHHHHhCCccCccccc---------hhHHH---HHHHHHHcChHHHHHHHHHHHHHHHHHHHH-HhChHHHHHHcCCCHH
Confidence            2334556664332111         01111   223355677776643322221111111111 112222222  34455


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          285 GVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       285 ~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      +.++......++..+++.+.+++.||
T Consensus       244 ~~~~~~~~~~~~~~~g~~~~~~l~~~  269 (394)
T PRK11652        244 TVSILFILPIPAAFFGAWFAGRPNKR  269 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67877778888888899999999998

>PRK12382 putative transporter; Provisional

Probab=99.83  E-value=3.9e-18  Score=160.20  Aligned_cols=154  Identities=15%  Similarity=0.095  Sum_probs=110.0

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhHHh-----hhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHH
Q 020422           25 NYTRDVHILSCAFLLIFLAYGAAQN-----LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGY   99 (326)
Q Consensus        25 ~~~~~~~~l~l~~~~~~~~~~~~~~-----l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~   99 (326)
                      +..+.++.+.++.++.+........     ++++++.+...-....+.......+++++.|+++||+|||+++..+.+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~   91 (392)
T PRK12382         12 SANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLAC   91 (392)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHH
Confidence            3444444444444444443332222     34455544333333466777788889999999999999999999988766


Q ss_pred             HHHHHHh---------hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhH
Q 020422          100 WLFVAAN---------LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQ  170 (326)
Q Consensus       100 ~~~~~~~---------~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~  170 (326)
                      .+..+.+         ..++++.+++.|+++|++.+..+++..+++.+..          |+++|++++++...+...|.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~a~~~~~~~~~~g~  161 (392)
T PRK12382         92 GLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLV----------GPKHSGKVMSWNGMAMYGAL  161 (392)
T ss_pred             HHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----------CccccchhhhHHHHHHHHHH
Confidence            5433221         1357788889999999999998888878887775          88999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCchh
Q 020422          171 FVGNLITLAVLKDDKGGSTSGTT  193 (326)
Q Consensus       171 ~~G~li~~~l~~~~~~~~~~wr~  193 (326)
                      .+|++++..+...     .+||.
T Consensus       162 ~~g~~~~~~l~~~-----~g~~~  179 (392)
T PRK12382        162 AAGAPLGLLLHSH-----FGFAA  179 (392)
T ss_pred             HHHHHHHHHHHhc-----cChHH
Confidence            9999998777543     46875

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=99.83  E-value=2.7e-19  Score=145.29  Aligned_cols=141  Identities=37%  Similarity=0.704  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhhc----------CCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHH
Q 020422           33 LSCAFLLIFLAYGAAQNLETTVN----------TEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (326)
Q Consensus        33 l~l~~~~~~~~~~~~~~l~~~l~----------~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~  102 (326)
                      ++++++++|++|++.+.+++++.          .+++.|..++++.|..++++++++|.+.+++|+|+.+++|.++|.++
T Consensus         1 Lg~~f~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y   80 (156)
T PF05978_consen    1 LGIGFMFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIY   80 (156)
T ss_pred             CchHHHHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            46889999999999987777662          24678999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          103 VAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       103 ~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                      .++++.|+++.++.+.++.|+|.+++|++++.|+++++          ++++|+|..|++|...+.+.++|+++..++.+
T Consensus        81 ~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s----------~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen   81 IASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYS----------TEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             HHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC----------CHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999987          67899999999999999999999999888765


Q ss_pred             C
Q 020422          183 D  183 (326)
Q Consensus       183 ~  183 (326)
                      .
T Consensus       151 ~  151 (156)
T PF05978_consen  151 G  151 (156)
T ss_pred             C
Confidence            4

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.82  E-value=7.5e-18  Score=159.55  Aligned_cols=259  Identities=12%  Similarity=0.071  Sum_probs=159.6

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhhhhhcCCCCch----hHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH
Q 020422           30 VHILSCAFLLIFLAYGAAQNLETTVNTEGNLG----TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA  105 (326)
Q Consensus        30 ~~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~g----~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~  105 (326)
                      .+++.+.++..-........+.+.++++.+.+    ....+..+.++.+++++.|++.||+|||+++..+.+++++....
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            34444444444333333333334443332322    23356667788889999999999999999999999888776654


Q ss_pred             h----hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422          106 N----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (326)
Q Consensus       106 ~----~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~  181 (326)
                      .    ..++++.++..|++.|+|.|..+++...++.+..          |+++|++..++.+..+++|..+|++++..+.
T Consensus        85 ~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        85 FWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMG----------PESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHC----------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3    2357888889999999999999999888998886          7788999999999999999999999987665


Q ss_pred             cCCCC---------------------CCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhchHHHHHH
Q 020422          182 KDDKG---------------------GSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSK  240 (326)
Q Consensus       182 ~~~~~---------------------~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (326)
                      .....                     ...+||.. |.+.+++.++..++..+.+.|+.+++++       ++.+.++.  
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-fl~~a~~~~~~~~~~~~~~~p~~~~~~~-------~~~~~~~~--  224 (410)
T TIGR00885       155 LSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTP-YMIIGAVVLAVALLIMLTKMPALNHSDA-------KQISFSAS--  224 (410)
T ss_pred             hcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCcccc-------ccccchhh--
Confidence            32100                     01358763 5444444443333333333332111111       01111111  


Q ss_pred             HHHHhhhcchhHHHH-HHHHHhhHHHHHhhhcccccccccccCc--chHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          241 SITTLLADVRMLLII-PLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       241 ~~~~~~~~~~~~~l~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                       ..+.+|+|+++... ..+++.+.+... ++.++++......+.  +..+.....+..+..+|+++++++.||
T Consensus       225 -~~~~~~~~~~~~~~l~~f~yvg~e~~~-~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r  295 (410)
T TIGR00885       225 -LSRLARIRHYREGVIAQFFYVGVQIMC-WTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISY  295 (410)
T ss_pred             -HHHHHhChhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             22456777777643 445566666444 223333222111222  223334445556778999999999999

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10504 putative transporter; Provisional

Probab=99.82  E-value=6e-18  Score=162.81  Aligned_cols=278  Identities=8%  Similarity=-0.065  Sum_probs=173.6

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHhhhhhhcCCCCch----hHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHH
Q 020422           26 YTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLG----TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL  101 (326)
Q Consensus        26 ~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~g----~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~  101 (326)
                      ..++++.+.+++++............+.+.++.+.+    ....+...++.++++++.|+++||+|||++++.+.+++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~   87 (471)
T PRK10504          8 VRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTL   87 (471)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            345677777776665555444443333333332222    2234555566678889999999999999999998887776


Q ss_pred             HHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 020422          102 FVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (326)
Q Consensus       102 ~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l  180 (326)
                      ..+.. +.++++.+++.|+++|++.+..++...+++.+..          |+++|+++.|+.....++|..+|+.+++.+
T Consensus        88 ~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l  157 (471)
T PRK10504         88 GSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIV----------PREQYMAAMTFVTLPGQVGPLLGPALGGLL  157 (471)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            66553 6788888899999999999999988888888876          788999999999999999999999998877


Q ss_pred             hcCCCCCCCCchhHHHHHHHHHHHHHHHHH-HhccCCcccc-ccccccc--------------cchhhchH---------
Q 020422          181 LKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEEDKG-EKETADA--------------SVNFYSYL---------  235 (326)
Q Consensus       181 ~~~~~~~~~~wr~~~f~~~~~~~~l~~il~-~~l~~~~~~~-~~~~~~~--------------~~~~~~~~---------  235 (326)
                      .+.     .+||+. |.+......++.++. ...|+++.++ +.|....              ...+...+         
T Consensus       158 ~~~-----~gw~~~-f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (471)
T PRK10504        158 VEY-----ASWHWI-FLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLV  231 (471)
T ss_pred             Hhh-----ccHHHH-HHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHH
Confidence            653     478874 444444444443333 3344432211 1110000              00000000         


Q ss_pred             ------------HHHH----HHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCcchHHHHHHHHHHHH
Q 020422          236 ------------VSLS----KSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAFD  297 (326)
Q Consensus       236 ------------~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~gi~~  297 (326)
                                  ++..    ....+.+|||+++......++....... ...+.|.+.+  .+.+....++.+....++.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~  310 (471)
T PRK10504        232 AVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGM-LPFMTPVFLQIGLGFSPFHAGLMMIPMVLGS  310 (471)
T ss_pred             HHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence                        0000    0012456778777655444433332221 1123333332  2444557788888888888


Q ss_pred             HHHHHHhhhhhhh--hhhHHhHHHH
Q 020422          298 AISLLGFATFFSV--HSLLVGLPLV  320 (326)
Q Consensus       298 ~~g~~~~G~l~Dr--R~~~~~~g~~  320 (326)
                      .++..+.|+++||  ||+++..+.+
T Consensus       311 ~~~~~~~~~l~~r~g~~~~~~~~~~  335 (471)
T PRK10504        311 MGMKRIVVQVVNRFGYRRVLVATTL  335 (471)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHH
Confidence            8888999999999  6666655554

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.82  E-value=1.6e-18  Score=173.44  Aligned_cols=144  Identities=12%  Similarity=0.028  Sum_probs=115.6

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        64 ~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      ..++.+++..++++++|+++||+|||++++++.++++++.+.. ++++++.++++|++.|++.|...+...+++++++  
T Consensus       207 l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~--  284 (742)
T TIGR01299       207 LGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFL--  284 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
Confidence            3566778889999999999999999999999998888777654 7889999999999999999999999999999997  


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC--------CCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--------GGSTSGTTLLFIVFLGVITLGTILMCFLR  214 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~--------~~~~~wr~~~f~~~~~~~~l~~il~~~l~  214 (326)
                              |+++||+.++++.....+|.++++.++..+....+        ....+||+. +++.++..++.+++.+++|
T Consensus       285 --------p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l-~~i~~lp~ll~ll~~~~lP  355 (742)
T TIGR01299       285 --------AQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVF-VIVCAFPCVFAIGALTFMP  355 (742)
T ss_pred             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHH-HHHHHHHHHHHHHHHHHcC
Confidence                    88999999999999999999999888766553211        012468873 4444444555556667889


Q ss_pred             CCcc
Q 020422          215 KEED  218 (326)
Q Consensus       215 ~~~~  218 (326)
                      |+++
T Consensus       356 ESPr  359 (742)
T TIGR01299       356 ESPR  359 (742)
T ss_pred             CCHH
Confidence            9764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10054 putative transporter; Provisional

Probab=99.82  E-value=3.1e-18  Score=161.43  Aligned_cols=267  Identities=14%  Similarity=0.072  Sum_probs=166.0

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhHHh-hhhhhcCCCCchh----HHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHH
Q 020422           25 NYTRDVHILSCAFLLIFLAYGAAQN-LETTVNTEGNLGT----ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGY   99 (326)
Q Consensus        25 ~~~~~~~~l~l~~~~~~~~~~~~~~-l~~~l~~~~~~g~----~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~   99 (326)
                      +.+|+.+.+.++.++...++..... +...+.++.+.+.    ...+.......+++++.|+++||+|||++++++.++.
T Consensus         4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~   83 (395)
T PRK10054          4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAF   83 (395)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHH
Confidence            4566677777776666555544332 2223322323222    2244445566778899999999999999999988877


Q ss_pred             HHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHH
Q 020422          100 WLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL  178 (326)
Q Consensus       100 ~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~  178 (326)
                      ++..+.. +.++++.+++.|.+.|.+.+...+...++..|..          |+++|+++.|+.+...++|..+|+.+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~~~~~g~~~~~~~lg~~igp~l~~  153 (395)
T PRK10054         84 ASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNL----------SSTSKTKIFSLNYTMLNIGWTVGPPLGT  153 (395)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655544 6788888888898988888877777777777765          7889999999999999999999999988


Q ss_pred             HHhcCCCCCCCCchhHHHHHHHHHHHHHHHH-HHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHH
Q 020422          179 AVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPL  257 (326)
Q Consensus       179 ~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  257 (326)
                      .+..      .+|+.. |....++.+++.++ .+++||++++++++       ++..     .+..+.+|||+++.....
T Consensus       154 ~l~~------~g~~~~-f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-------~~~~-----~~~~~~~~~~~~~~~~~~  214 (395)
T PRK10054        154 LLVM------QSINLP-FWLAAICSAFPLVFIQIWVQRSEKAIATE-------TGSV-----WSPSVLLQDKALLWFTCS  214 (395)
T ss_pred             HHHH------hccCcH-HHHHHHHHHHHHHHHHHHHhccccccccc-------hhhh-----hhhhhhccCceehHHHHH
Confidence            7753      257763 54545555554333 34455543321111       0101     112356788888765544


Q ss_pred             HHHhhHHHHHh---hhcccccccccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHH
Q 020422          258 FAYSGLQQAFV---WAEFTKEIVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLV  320 (326)
Q Consensus       258 ~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~  320 (326)
                      .+...+.....   ...|.+.....+.+.+..+......++.........|++.||  ||+.+..+.+
T Consensus       215 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~  282 (395)
T PRK10054        215 GFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTL  282 (395)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHH
Confidence            33322221111   112222221122333456667777776666677888999998  5665555543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.82  E-value=2.6e-18  Score=166.83  Aligned_cols=143  Identities=15%  Similarity=0.031  Sum_probs=110.1

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhh------hHHHHHHHHHhhhhhHHHHhhhhHHHH
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPS------WYTMVPASLYLGFAASIIWVGEGTYLT  137 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~------~~~l~~~r~l~G~g~g~~~~~~~~~l~  137 (326)
                      .+...++..+++++.|+++||+|||+++.++.+++.+..+.. ++++      +..+++.|+++|++.|..++....|++
T Consensus        62 ~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~  141 (502)
T TIGR00887        62 NGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITS  141 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            455566778889999999999999999999988887766543 4443      678889999999999999999999999


Q ss_pred             HHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC------------------CCCCCchhHHHHHH
Q 020422          138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK------------------GGSTSGTTLLFIVF  199 (326)
Q Consensus       138 ~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~------------------~~~~~wr~~~f~~~  199 (326)
                      |++          |+++||++.++.+....+|..+|+.++..+.....                  ...++||.. +.+.
T Consensus       142 e~~----------p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~-~~~~  210 (502)
T TIGR00887       142 EFA----------TKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRIL-IGFG  210 (502)
T ss_pred             Hhc----------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHH-HHHH
Confidence            997          88999999999999999999999988766543110                  012479874 4333


Q ss_pred             HHHHHHHHHHHHhccCCcc
Q 020422          200 LGVITLGTILMCFLRKEED  218 (326)
Q Consensus       200 ~~~~~l~~il~~~l~~~~~  218 (326)
                      .+..++..+..+++||+++
T Consensus       211 ~ip~~i~~~~~~~lpESpr  229 (502)
T TIGR00887       211 AVPALLALYFRLTIPETPR  229 (502)
T ss_pred             HHHHHHHHHHHHhCCCCHH
Confidence            4444444455577899765

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.82  E-value=4.1e-18  Score=162.68  Aligned_cols=230  Identities=10%  Similarity=-0.014  Sum_probs=150.5

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hh----hhhHHHHHHHHHhhhhhHHHHhhhhHHHH
Q 020422           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF----PSWYTMVPASLYLGFAASIIWVGEGTYLT  137 (326)
Q Consensus        63 ~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~----~~~~~l~~~r~l~G~g~g~~~~~~~~~l~  137 (326)
                      ...+....++.+++++.|+++||+|||+++..+.+++++..... ..    +++..+++.|.+.|++.|..++....++.
T Consensus        65 ~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~  144 (438)
T TIGR00712        65 FALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMV  144 (438)
T ss_pred             HHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            34566667788889999999999999999999888777665543 22    45677778899999999998888778888


Q ss_pred             HHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHH-HHHHHHhccCC
Q 020422          138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTILMCFLRKE  216 (326)
Q Consensus       138 ~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l-~~il~~~l~~~  216 (326)
                      ++.          |+++||+++|+++.+.++|..+++.+.......    ..+||.. |++.+++.++ .++..+++||+
T Consensus       145 ~~~----------~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~----~~~w~~~-f~~~~~~~~i~~~~~~~~~~~~  209 (438)
T TIGR00712       145 HWW----------SQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW----FNDWHAA-LYFPAICAIIVALFAFAMMRDT  209 (438)
T ss_pred             Hhc----------CcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH----hhhhHHH-HHHHHHHHHHHHHHHHHhccCC
Confidence            876          889999999999999999999988776543322    1479874 5554555444 33445667775


Q ss_pred             ccccc--c-c--cccc----cch--hhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCc
Q 020422          217 EDKGE--K-E--TADA----SVN--FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGV  283 (326)
Q Consensus       217 ~~~~~--~-~--~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~  283 (326)
                      +++.+  + +  ..+.    ..+  ++.+.++.+.  .+.+|+++++......+.......... .+.|.+..  .+.+.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~l~~~~g~s~  286 (438)
T TIGR00712       210 PQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFM--QYVLPNKLLWYIAIANVFVYLLRYGVL-DWSPTYLKEVKHFAL  286 (438)
T ss_pred             HHhcCCCCchhcccccccccccccccccchHHHHH--HHHccCchHHHHHHHHHHHHHHHHHHH-HhHHHHHHHccCCCh
Confidence            43210  0 0  0000    000  0011111111  135688888776544333222111112 23344333  34566


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          284 SGVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       284 ~~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      ...++....+++++.++++++|+++||
T Consensus       287 ~~~~~~~~~~~~~~~ig~~~~g~l~dr  313 (438)
T TIGR00712       287 DKSSWAYFLYEYAGIPGTLLCGWMSDK  313 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678888888999999999999999999

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.82  E-value=5e-18  Score=162.90  Aligned_cols=243  Identities=10%  Similarity=-0.022  Sum_probs=150.5

Q ss_pred             hhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHH-HHHHhhhhhHHH
Q 020422           51 ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVP-ASLYLGFAASII  128 (326)
Q Consensus        51 ~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~-~r~l~G~g~g~~  128 (326)
                      +++++.+.+......+..+....++.++.|+++||+|||++++.+.++.++..+.. ++++++.++. .|++.|++.+..
T Consensus        46 ~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~  125 (455)
T TIGR00892        46 QQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFN  125 (455)
T ss_pred             HHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhh
Confidence            33444333333333455556677888999999999999999999988777766554 6777777654 579999999987


Q ss_pred             HhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHH
Q 020422          129 WVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI  208 (326)
Q Consensus       129 ~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~i  208 (326)
                      ++...+++.++.           +++|+++.|+...+..+|..+++.+++.+...     .+||+. |++.+++.++..+
T Consensus       126 ~~~~~~~~~~~~-----------~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~-----~gwr~~-f~~~~~~~~~~~v  188 (455)
T TIGR00892       126 FQPSLTMLGKYF-----------YRRRPLANGLAMAGSPVFLSTLAPLNQYLFES-----FGWRGS-FLILGGLLLHCCV  188 (455)
T ss_pred             hhHHHHHHHHHH-----------HhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH-----hChHHH-HHHHHHHHHHHHH
Confidence            666666777764           46899999999999999999999888776543     479874 5555555554444


Q ss_pred             HHHhccCCccc----ccc--cccc-c-cchh--hchHHHHHHHH--HHhhhcchhHHHHHHHHHhhHHHHHhhhcccccc
Q 020422          209 LMCFLRKEEDK----GEK--ETAD-A-SVNF--YSYLVSLSKSI--TTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEI  276 (326)
Q Consensus       209 l~~~l~~~~~~----~~~--~~~~-~-~~~~--~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~  276 (326)
                      ..+++++++++    +++  +..+ . ..++  ..+..++.++.  .+.+++|+++......+..++........++++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~  268 (455)
T TIGR00892       189 CGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYA  268 (455)
T ss_pred             HHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHH
Confidence            33333322111    000  0000 0 0000  00111111111  2567888887655443333222111111222222


Q ss_pred             cccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          277 VTPALGVSGVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       277 ~~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      ...+.+....+......+++..+++++.|+++||
T Consensus       269 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~  302 (455)
T TIGR00892       269 KDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGL  302 (455)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            2234556678888899999999999999999996

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.81  E-value=2.5e-18  Score=163.00  Aligned_cols=230  Identities=12%  Similarity=-0.020  Sum_probs=148.6

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh------hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHH
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN------LFPSWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~------~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~  138 (326)
                      .+...+...+++++.|+++||+|||+++..+.++.++.....      ..++++.+++.|++.|++.+...++..+++.+
T Consensus        58 ~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~  137 (417)
T PRK10489         58 VTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPA  137 (417)
T ss_pred             HHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            455556677888999999999999999988776655433221      14577888889999999999887877777777


Q ss_pred             HhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 020422          139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (326)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~  218 (326)
                      +.          |+++|+++.++.....++|..+|+.+++.+...     .+|++. |.+..+..++..++.+.+|++++
T Consensus       138 ~~----------~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~-----~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~  201 (417)
T PRK10489        138 LV----------GRENLMQAGAITMLTVRLGSVISPALGGLLIAA-----GGVAWN-YGLAAAGTFITLLPLLRLPALPP  201 (417)
T ss_pred             cc----------CHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH-----HhhHHH-HHHHHHHHHHHHHHHHhCCCCCC
Confidence            75          778999999999999999999999998877543     357663 44444444444445556666433


Q ss_pred             ccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCcchHHHHHHHHHHH
Q 020422          219 KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAF  296 (326)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~gi~  296 (326)
                      +++++.     +...+.+   +.....+++|.++......+....... .. .+.|.+..  .+.+.+..++.....+++
T Consensus       202 ~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~p~~~~~~~g~~~~~~g~~~~~~~~g  271 (417)
T PRK10489        202 PPQPRE-----HPLRSLL---AGFRFLLASPVVGGIALLGGLLTMASA-VR-VLYPALADEVWQMGAAQIGLLYAAVPLG  271 (417)
T ss_pred             CCcccc-----cchHHHH---HHHHHHHcChHHHHHHHHHHHHHHHHh-HH-HhhHHHHHhccCCChhHhHHHHHHHHHH
Confidence            211110     0111111   122345567776554332222111111 11 22333333  245566788888999999


Q ss_pred             HHHHHHHhhhhhhh-h-hhHHhHHHH
Q 020422          297 DAISLLGFATFFSV-H-SLLVGLPLV  320 (326)
Q Consensus       297 ~~~g~~~~G~l~Dr-R-~~~~~~g~~  320 (326)
                      ..++.++.+++.|| | ++.+..+.+
T Consensus       272 ~~ig~~~~~~l~~~~~~~~~l~~~~~  297 (417)
T PRK10489        272 AALGALTSGWLAHSARPGLLMLLSTL  297 (417)
T ss_pred             HHHHHHHHHHhhhccCcchHHHHHHH
Confidence            99999999999998 3 444444443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.81  E-value=9.1e-18  Score=162.45  Aligned_cols=154  Identities=15%  Similarity=0.095  Sum_probs=116.5

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHhhhhhhcCCCCc----hhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHH
Q 020422           26 YTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNL----GTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL  101 (326)
Q Consensus        26 ~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~----g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~  101 (326)
                      .++.+..+.+++++....+.....+.+.+..+.+.    .....+..+++..+++++.|+++||+|||++++.+.++.++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~   97 (496)
T PRK03893         18 QWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSV   97 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            34455566666555554554444444444333322    22335566677788899999999999999999999888777


Q ss_pred             HHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 020422          102 FVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (326)
Q Consensus       102 ~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l  180 (326)
                      ..+.. +.++++.+++.|++.|++.+..++....++.+..          |+++|+++.+++..+..+|..+|+.+...+
T Consensus        98 ~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  167 (496)
T PRK03893         98 GTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESW----------PKHLRNKASGFLISGFSIGAVVAAQVYSLV  167 (496)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66654 6789999999999999999999998888888886          888999999999999999999999888776


Q ss_pred             hcCCCCCCCCchhH
Q 020422          181 LKDDKGGSTSGTTL  194 (326)
Q Consensus       181 ~~~~~~~~~~wr~~  194 (326)
                      ...     .+||+.
T Consensus       168 ~~~-----~~w~~~  176 (496)
T PRK03893        168 VPV-----WGWRAL  176 (496)
T ss_pred             hcc-----CCHHHH
Confidence            543     479874

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.81  E-value=6.9e-18  Score=158.83  Aligned_cols=154  Identities=14%  Similarity=0.089  Sum_probs=110.8

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhHHh-----hhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHH
Q 020422           25 NYTRDVHILSCAFLLIFLAYGAAQN-----LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGY   99 (326)
Q Consensus        25 ~~~~~~~~l~l~~~~~~~~~~~~~~-----l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~   99 (326)
                      +..+++..+.+..+..+.+......     ++++++.+...-....+..+..+.+++++.|+++||+|||+++..+.+++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~   91 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC   91 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence            4556666666665555444333322     22333323222223356666778899999999999999999999998877


Q ss_pred             HHHHHHh----hh-----hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhH
Q 020422          100 WLFVAAN----LF-----PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQ  170 (326)
Q Consensus       100 ~~~~~~~----~~-----~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~  170 (326)
                      ++..+..    ..     .++..+++.|+++|++.+..+++..+++.++.          |+++|+++.++.......|.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~  161 (399)
T PRK05122         92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRV----------GALHTGRVISWNGIATYGAL  161 (399)
T ss_pred             HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhc----------ChhhhccchhhhhhhhhHHH
Confidence            6544322    12     24667888999999999999988888888776          88999999999988889999


Q ss_pred             HHHHHHHHHHhcCCCCCCCCchh
Q 020422          171 FVGNLITLAVLKDDKGGSTSGTT  193 (326)
Q Consensus       171 ~~G~li~~~l~~~~~~~~~~wr~  193 (326)
                      .+|+.++..+.+.     .+|+.
T Consensus       162 ~~g~~l~~~l~~~-----~g~~~  179 (399)
T PRK05122        162 AIGAPLGVLLYHW-----GGLAG  179 (399)
T ss_pred             HHHHHHHHHHHHc-----ccHHH
Confidence            9999998777653     46876

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.81  E-value=1.4e-18  Score=161.89  Aligned_cols=225  Identities=14%  Similarity=0.031  Sum_probs=142.8

Q ss_pred             HHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhH--------HHHHHHHHhhhhhHHHHhhhhHHHHHHhH
Q 020422           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWY--------TMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (326)
Q Consensus        71 ~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~--------~l~~~r~l~G~g~g~~~~~~~~~l~~~~~  141 (326)
                      ...+++++.|+++||+|||+++..+.+++++..... +.+++.        .+++.|+++|++.+..+++..++++|+. 
T Consensus        47 ~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~-  125 (394)
T TIGR00883        47 ARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYA-  125 (394)
T ss_pred             HhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcC-
Confidence            334678999999999999999999998887766654 556543        4778999999999999998888998886 


Q ss_pred             hhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC---CCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 020422          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (326)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~---~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~  218 (326)
                               |+++|++..++...+..+|..+|++++..+.....   ....+||.. |.+..++.+++.++...++|+++
T Consensus       126 ---------~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~~~~  195 (394)
T TIGR00883       126 ---------PPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIP-FLVSAVLVLIGLYLRRNLEETPV  195 (394)
T ss_pred             ---------CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHH-HHHHHHHHHHHHHHHHhcCCChh
Confidence                     88999999999999999999999887765543111   123578863 44444444444333344565443


Q ss_pred             ccccccccccchhhchHHHHHHHHHHhhhcch--hHHHHHHHHHhhHHHHHhhhcccccccc--cccCcchHHHHHHHHH
Q 020422          219 KGEKETADASVNFYSYLVSLSKSITTLLADVR--MLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYG  294 (326)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~g  294 (326)
                      .++++.++  ++...+.       .+.+++++  ++......+.......... .+.+.+..  .+.+.++.+......+
T Consensus       196 ~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~  265 (394)
T TIGR00883       196 FEKAQEKH--KKKRGPI-------RETLTKHRKPFLLGLGLVIATTTTFYLIT-TYLPTYLTQTLGLSANSALLVLMLSL  265 (394)
T ss_pred             HHHHHhcc--ccccCCH-------HHHHHhchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCChhHHHHHHHHHH
Confidence            21111000  0011111       23333433  3333332222222211111 23333332  2345567788888888


Q ss_pred             HHHHHHHHHhhhhhhh--hhhHHh
Q 020422          295 AFDAISLLGFATFFSV--HSLLVG  316 (326)
Q Consensus       295 i~~~~g~~~~G~l~Dr--R~~~~~  316 (326)
                      ++..++..+.|+++||  ||+.+.
T Consensus       266 ~~~~~~~~~~g~l~dr~g~~~~~~  289 (394)
T TIGR00883       266 ILFFITIPLSGALSDRIGRRPVLI  289 (394)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHH
Confidence            9999999999999999  555444

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.81  E-value=2e-18  Score=171.39  Aligned_cols=250  Identities=16%  Similarity=0.081  Sum_probs=159.1

Q ss_pred             hhhhhhcCC-CCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhh-----------------
Q 020422           49 NLETTVNTE-GNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFP-----------------  109 (326)
Q Consensus        49 ~l~~~l~~~-~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~-----------------  109 (326)
                      .+++.++.+ .+.|.+ .+...++++++.++.+++.||+|||+.+.+|.+++++..+.+ +.+                 
T Consensus        58 ~iek~F~lss~~~G~i-~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~  136 (633)
T TIGR00805        58 TIERRFKLSTSSSGLI-NGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGN  136 (633)
T ss_pred             hhhhhhCCCCCcceee-eehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccc
Confidence            344444433 233333 456667788889999999999999999999999888877654 321                 


Q ss_pred             ----------------------------------hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccch
Q 020422          110 ----------------------------------SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVI  155 (326)
Q Consensus       110 ----------------------------------~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~r  155 (326)
                                                        .+..++++|+++|+|.++.++...+|+.|+.          |+++|
T Consensus       137 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~----------~~~~~  206 (633)
T TIGR00805       137 LSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFA----------KSKNS  206 (633)
T ss_pred             ccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccC----------Ccccc
Confidence                                              2456778999999999999999999999997          88999


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHHhcCCC-----------CCCCCchh-----HHHHHHHHHHHHHHHHHHhccCCccc
Q 020422          156 GSFNGEFWGMFASHQFVGNLITLAVLKDDK-----------GGSTSGTT-----LLFIVFLGVITLGTILMCFLRKEEDK  219 (326)
Q Consensus       156 g~~~gi~~~~~~~g~~~G~li~~~l~~~~~-----------~~~~~wr~-----~~f~~~~~~~~l~~il~~~l~~~~~~  219 (326)
                      +++.|+++.+..+|..+|+++++.+.....           ....+|||     ..|.+.+++.++..+.++++|++.++
T Consensus       207 ~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~  286 (633)
T TIGR00805       207 PLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPK  286 (633)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC
Confidence            999999999999999999999887764321           00112222     23444444554444445566654321


Q ss_pred             c----ccc-ccccc----chh--h---chHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCc
Q 020422          220 G----EKE-TADAS----VNF--Y---SYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGV  283 (326)
Q Consensus       220 ~----~~~-~~~~~----~~~--~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~  283 (326)
                      +    +.+ .++..    ..+  .   ...++..+..++.+++|.++......+........+. .+.|.+..  .+++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~-~~lP~yl~~~~g~s~  365 (633)
T TIGR00805       287 EGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYI-TFLPKYLENQYGISS  365 (633)
T ss_pred             cccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCcH
Confidence            1    000 00000    000  0   0112223445678899988876554333322222122 23344333  34556


Q ss_pred             chHHHHHHHHHH-HHHHHHHHhhhhhhh
Q 020422          284 SGVGGAMAVYGA-FDAISLLGFATFFSV  310 (326)
Q Consensus       284 ~~~g~~~~~~gi-~~~~g~~~~G~l~Dr  310 (326)
                      ++.++++....+ +.++|.+++|+++||
T Consensus       366 ~~ag~l~~~~~i~~~~vG~~l~G~l~~r  393 (633)
T TIGR00805       366 AEANFLIGVVNLPAAGLGYLIGGFIMKK  393 (633)
T ss_pred             HHHHHHhhhhhhhHHHHHHhhhhheeee
Confidence            677877776665 567899999999998

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00896 CynX cyanate transporter

Probab=99.81  E-value=5.3e-18  Score=157.20  Aligned_cols=241  Identities=10%  Similarity=0.072  Sum_probs=151.9

Q ss_pred             hhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHhhhhhhHHHHHHHHHhhhhhHHHH
Q 020422           50 LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIW  129 (326)
Q Consensus        50 l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~  129 (326)
                      ++++++.+........+..++.+.+++++.|++.||+|||+++.++.++.++..+....++++.++..|++.|++.+...
T Consensus        26 l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~g~~~~~  105 (355)
T TIGR00896        26 IRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALIGVGIAIIN  105 (355)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh
Confidence            34444433333233456777788899999999999999999999988776665544456788888899999999999887


Q ss_pred             hhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 020422          130 VGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL  209 (326)
Q Consensus       130 ~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il  209 (326)
                      +....++.+.           .+++|+++.+++..+..+|..+|+.+...+.+..   ..+||.. |....+..++.  +
T Consensus       106 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~---~~~w~~~-f~~~~~~~~~~--~  168 (355)
T TIGR00896       106 VLLPSLIKRD-----------FPQRVGLMTGLYSMALMGGAALAAAATVPLAQHS---GGHWQQA-LAWWALPALLA--L  168 (355)
T ss_pred             ccchHHHHHh-----------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHH-HHHHHHHHHHH--H
Confidence            7766666665           3468999999999999999999998877665432   1248763 33333322222  2


Q ss_pred             HHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccc-cccccCcchHHH
Q 020422          210 MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEI-VTPALGVSGVGG  288 (326)
Q Consensus       210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~  288 (326)
                      ..++|+.+++++++.+    .+..+       .++.+|+|+++.....+........... .+.|.+ .+.+.+.++.+.
T Consensus       169 ~~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lp~~~~~~g~~~~~~g~  236 (355)
T TIGR00896       169 LAWIPQVRRRVAANQT----TTRLT-------PVRIWRSPLAWQVTVFFGLQSGLYYSLI-GWLPAILISHGASAATAGS  236 (355)
T ss_pred             HHHhhhhccccCCCCC----CCCCC-------CchhhcCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHH
Confidence            2334443221111100    00001       1245567777654433222222111112 223333 234556667889


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhh---hhhHHhHHH
Q 020422          289 AMAVYGAFDAISLLGFATFFSV---HSLLVGLPL  319 (326)
Q Consensus       289 ~~~~~gi~~~~g~~~~G~l~Dr---R~~~~~~g~  319 (326)
                      .....+++..+++++.|+++||   ||..+..+.
T Consensus       237 ~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~  270 (355)
T TIGR00896       237 LLALMQLAQAASALLIPALARRVKDQRGIVAVLA  270 (355)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHH
Confidence            9999999999999999999999   454444443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.80  E-value=6e-17  Score=152.91  Aligned_cols=249  Identities=11%  Similarity=0.041  Sum_probs=152.9

Q ss_pred             HHHHHHHHHHHHHHHhHHhhhhhhcCCCCchhHHHHHHH----HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh
Q 020422           31 HILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILY----TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN  106 (326)
Q Consensus        31 ~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~----~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~  106 (326)
                      +++...++.....+.....+...+..+.+.+....+...    ....+.+++.|+++||+|||+++..+.++.++..+..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~   93 (400)
T PRK11646         14 FLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATM   93 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333344333343333333333    3345557889999999999999999999887776654


Q ss_pred             -hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC
Q 020422          107 -LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK  185 (326)
Q Consensus       107 -~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~  185 (326)
                       ..++++.+++.|+++|++.+..+++..+++.+..          |+++|+++.|+.....++|..+|+.+++.+..   
T Consensus        94 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~----------~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~---  160 (400)
T PRK11646         94 AIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLI----------RPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ---  160 (400)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence             6778888889999999999998888888888876          78899999999999999999999999888762   


Q ss_pred             CCCCCchhHHHHHHHHHHHHHH-HHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHH
Q 020422          186 GGSTSGTTLLFIVFLGVITLGT-ILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQ  264 (326)
Q Consensus       186 ~~~~~wr~~~f~~~~~~~~l~~-il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  264 (326)
                         .+||+. |++.....++.. +..+++||+++++  +        +.+.++   +..+.++|++++......+.....
T Consensus       161 ---~g~~~~-f~~~~~~~~~~~i~~~~~~~~~~~~~--~--------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  223 (400)
T PRK11646        161 ---YDFRLV-CATGAVLFVLAAAFNAWLLPAYKLST--V--------RTPVRE---GMTRVLRDKRFVTYVLTLTGYYML  223 (400)
T ss_pred             ---hhHHHH-HHHHHHHHHHHHHHHHHhCCcccccc--c--------chhhHH---HHHHHHcCchHHHHHHHHHHHHHH
Confidence               368763 444344333333 2234455422111  0        001111   233566788776543332221111


Q ss_pred             HHHhhhccccccccc-ccCcchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          265 QAFVWAEFTKEIVTP-ALGVSGVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       265 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      .... ..+.|.+..+ ..+.+..++.....++....+....+++.||
T Consensus       224 ~~~~-~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  269 (400)
T PRK11646        224 AVQV-MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEK  269 (400)
T ss_pred             HHHH-HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111 1233443332 2345567877777777776666666777775

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.79  E-value=1.9e-16  Score=148.60  Aligned_cols=241  Identities=14%  Similarity=0.085  Sum_probs=162.6

Q ss_pred             hhhhhcCCCCc-hhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHH
Q 020422           50 LETTVNTEGNL-GTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASI  127 (326)
Q Consensus        50 l~~~l~~~~~~-g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~  127 (326)
                      +.++++.+.+. -....+.++.+|+++++++|.++||+|.|+++.++.+.+++.++.. ++++...+.+.|++.|+++|+
T Consensus        52 L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~  131 (511)
T TIGR00806        52 LLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAA  131 (511)
T ss_pred             HHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444333 3334677778899999999999999999999999999999988876 778999999999999999999


Q ss_pred             HHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHH--HHHHHHHHHH
Q 020422          128 IWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLL--FIVFLGVITL  205 (326)
Q Consensus       128 ~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~--f~~~~~~~~l  205 (326)
                      .+ +...|+..+.          |+++|+++.|++.++..+|.+++++++..+. .     .+||...  ..+..+...+
T Consensus       132 ~~-A~~syI~~Wf----------P~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s-----~gWr~y~~Ln~Isl~s~~~  194 (511)
T TIGR00806       132 RI-AYSSYIFSLV----------PPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-T-----LGWISYSTLNIISLVFMTF  194 (511)
T ss_pred             HH-HHHHHHHHHC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-----cCchhHHHHHHHHHHHHHH
Confidence            99 8899999997          8899999999999999999999999987743 2     4788622  1233344456


Q ss_pred             HHHHHHhccCCccc----ccc--------c--c--cccc--chh-hc-----hHHHHHHHHHHhhhcchhHHHHHH--HH
Q 020422          206 GTILMCFLRKEEDK----GEK--------E--T--ADAS--VNF-YS-----YLVSLSKSITTLLADVRMLLIIPL--FA  259 (326)
Q Consensus       206 ~~il~~~l~~~~~~----~~~--------~--~--~~~~--~~~-~~-----~~~~~~~~~~~~~~~~~~~~l~~~--~~  259 (326)
                      +.++.+++|.+++.    +++        +  .  .+..  ..+ .+     ..+...+++.+..+|++++.....  +.
T Consensus       195 a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a  274 (511)
T TIGR00806       195 SVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFN  274 (511)
T ss_pred             HHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHH
Confidence            77778899965541    110        0  0  0000  000 00     112223455566788887764432  33


Q ss_pred             HhhHHHHHhhhcccccccc--cccCcchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          260 YSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       260 ~~g~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      .+|..+..   .|.+.+-.  +.-..+..|.+-++..+.++++++..|++-.+
T Consensus       275 ~~g~~qv~---~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~  324 (511)
T TIGR00806       275 SAGYYLIT---YYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIR  324 (511)
T ss_pred             hhHHHHHH---HHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCC
Confidence            34444332   22222211  11111256777777777788889999998665

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.78  E-value=3.7e-17  Score=173.25  Aligned_cols=243  Identities=14%  Similarity=0.060  Sum_probs=154.3

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH----hhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA----NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~----~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~  140 (326)
                      .++..+.+.++++++|+++||+|||++++++.++..++.+.    ...++++.+++.|+++|++.+..+++..+++.++.
T Consensus        53 ~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  132 (1146)
T PRK08633         53 NALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELV  132 (1146)
T ss_pred             HHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhc
Confidence            45566677888999999999999999999887665444432    23567889999999999999999999999999987


Q ss_pred             HhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCC---C-CCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 020422          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD---K-GGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (326)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~---~-~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~  216 (326)
                                |+++|++++|++..+.++|.++|+++++.+....   . ....+|++..+++.....++++++.+.+|+.
T Consensus       133 ----------~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (1146)
T PRK08633        133 ----------GKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKV  202 (1146)
T ss_pred             ----------CcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCC
Confidence                      8899999999999999999999999988876431   0 0011233322222223333444445566665


Q ss_pred             ccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc-cccCcc-hHHHHHHHHH
Q 020422          217 EDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVS-GVGGAMAVYG  294 (326)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~-~~g~~~~~~g  294 (326)
                      ++......++   .+....++....+...++++.++......+............++.++.. .+.+.. ..++.+...+
T Consensus       203 ~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~  279 (1146)
T PRK08633        203 PAAAPEVFDK---KKYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASA  279 (1146)
T ss_pred             CCCCcccccc---cccccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            4322111000   0111111212233345677776665443332222222222223222221 244555 6788899999


Q ss_pred             HHHHHHHHHhhhhhhh--hhhHHhHHHH
Q 020422          295 AFDAISLLGFATFFSV--HSLLVGLPLV  320 (326)
Q Consensus       295 i~~~~g~~~~G~l~Dr--R~~~~~~g~~  320 (326)
                      ++..+++++.|+++||  |+.++..+.+
T Consensus       280 ig~~~g~~~~g~l~~r~~~~~~~~~~~~  307 (1146)
T PRK08633        280 IGIGIGSLLAGRLSGRHIELGLVPLGAL  307 (1146)
T ss_pred             HHHHHHHHHHHHHhCCceEccchhHHHH
Confidence            9999999999999999  4444444443

>TIGR00898 2A0119 cation transport protein

Probab=99.78  E-value=1.1e-17  Score=162.24  Aligned_cols=238  Identities=14%  Similarity=0.072  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhH
Q 020422           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (326)
Q Consensus        63 ~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~  141 (326)
                      ...++.++++.+++++.|+++||+|||+++.++.++.++..+.. ++++++.+++.|++.|++.+..++...+++.|+. 
T Consensus       131 ~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~-  209 (505)
T TIGR00898       131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFL-  209 (505)
T ss_pred             HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheec-
Confidence            34677778889999999999999999999999998887777654 7899999999999999999999999899999987 


Q ss_pred             hhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccc--
Q 020422          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK--  219 (326)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~--  219 (326)
                               |+++|++..+++..+...|.+++++++..+.        +||+. |++..+..++..+..+++||+++.  
T Consensus       210 ---------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--------~wr~~-~~~~~i~~~~~~~~~~~~~esp~~l~  271 (505)
T TIGR00898       210 ---------PKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--------DWRWL-QLAVSLPTFLFFLLSWFVPESPRWLI  271 (505)
T ss_pred             ---------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--------HHHHH-HHHHHHHHHHHHHHHHhcCCChHHHH
Confidence                     8899999999998888899888888875542        38874 545555555555556778886531  


Q ss_pred             --cccccc-----------cc--cchh-hch-HH---HHH--HHHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccccc
Q 020422          220 --GEKETA-----------DA--SVNF-YSY-LV---SLS--KSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV  277 (326)
Q Consensus       220 --~~~~~~-----------~~--~~~~-~~~-~~---~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~  277 (326)
                        .+.++.           +.  ..+. ... .+   +..  ....+.+++|+++..........+...+..  +...+.
T Consensus       272 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  349 (505)
T TIGR00898       272 SQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY--YGLVLD  349 (505)
T ss_pred             HCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH--HHHhcc
Confidence              110000           00  0000 000 00   000  123456677777665443322222211111  111111


Q ss_pred             ccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHh
Q 020422          278 TPALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFH  322 (326)
Q Consensus       278 ~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~  322 (326)
                      ....+.+ ........++....+.++.++++||  ||..+..+.++.
T Consensus       350 ~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~  395 (505)
T TIGR00898       350 LGNLGGN-IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLA  395 (505)
T ss_pred             ccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            1122222 2334455677888899999999999  776666655443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.78  E-value=6.7e-17  Score=171.33  Aligned_cols=226  Identities=13%  Similarity=0.039  Sum_probs=151.3

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhchhhHHHH---HhHHHHHHHH-HhhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHH
Q 020422           64 SLGILYTSFTCFSLVASLVVRVLGSKNALIL---GTTGYWLFVA-ANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (326)
Q Consensus        64 ~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~---g~~~~~~~~~-~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~  139 (326)
                      ..++..+.+.++++++|+++||+|||+++..   ..+.+..... +...++++.++++|+++|++.+..+++..+++.++
T Consensus        57 ~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~  136 (1140)
T PRK06814         57 AGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDH  136 (1140)
T ss_pred             HHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhh
Confidence            3455667788999999999999999998643   2222222222 23457899999999999999999999999999998


Q ss_pred             hHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccc
Q 020422          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK  219 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~  219 (326)
                      .          |+++|++++|+...+.++|.++|+++++.+...     .+|+.. |+......+++.++.++++++++.
T Consensus       137 ~----------~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  200 (1140)
T PRK06814        137 L----------NKDELLGANALVEAGTFIAILLGTIIGGLATIS-----GNFVIL-VALLMGIAVLGWLASLFIPKTGNA  200 (1140)
T ss_pred             c----------CccccchhhHHHHHHHHHHHHHHHHHHHHHHhc-----cccHHH-HHHHHHHHHHHHHHHhhCCCCCCC
Confidence            7          889999999999999999999999999988754     368763 333333334444455666665432


Q ss_pred             cccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc-cccCcchHHHHHHHHHHHHH
Q 020422          220 GEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDA  298 (326)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~gi~~~  298 (326)
                      ......     +.....+....+....+++.++.....+++..+........++.++.. .+.+....|+.+..++++.+
T Consensus       201 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~  275 (1140)
T PRK06814        201 APDLKI-----DRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVA  275 (1140)
T ss_pred             CCCCee-----ccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence            111100     001111111223345677887776655444433332223333332221 23455678999999999999


Q ss_pred             HHHHHhhhhhhh
Q 020422          299 ISLLGFATFFSV  310 (326)
Q Consensus       299 ~g~~~~G~l~Dr  310 (326)
                      +|+++.|+++|+
T Consensus       276 ig~~~~g~l~~~  287 (1140)
T PRK06814        276 VGSFLASKLSEG  287 (1140)
T ss_pred             HHHHHHHHHhCC
Confidence            999999999986

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.78  E-value=8.9e-18  Score=160.17  Aligned_cols=223  Identities=12%  Similarity=0.048  Sum_probs=163.6

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-h--hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhH
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~  141 (326)
                      .+..+.++.++++++|++.||+|.|+++..+.++.++.++.. +  ..+++.+++.|+++|+++|..+++.....+.|+ 
T Consensus        79 ~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~-  157 (466)
T KOG2532|consen   79 FSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWA-  157 (466)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeEC-
Confidence            566677778889999999999999999999999988888764 3  235567788999999999999999999999997 


Q ss_pred             hhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH-hccCCcccc
Q 020422          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC-FLRKEEDKG  220 (326)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~-~l~~~~~~~  220 (326)
                               |++||++..++..++.++|.+++.++++.+.+.    +.||+.. |.++++++++-.++++ +..|++.+.
T Consensus       158 ---------P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s----~~GW~si-fY~~g~~g~i~~~~w~~~~~d~P~~h  223 (466)
T KOG2532|consen  158 ---------PPNERSTFIAILTAGSQLGTIITMPVSGLLCES----SLGWPSI-FYVFGIVGLIWFILWFLFYSDSPSKH  223 (466)
T ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc----CCCCchH-HHHHHHHHHHHHHHHHHHhcCCcccC
Confidence                     999999999999999999999999888888654    3689874 5567777666555543 344433321


Q ss_pred             c----cccccccc-------h--hhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCcch
Q 020422          221 E----KETADASV-------N--FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSG  285 (326)
Q Consensus       221 ~----~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~  285 (326)
                      +    +|.+..+.       +  .+.+       .+++++++.+|......+.-.+....+. .|.|.|..  .+++.+.
T Consensus       224 ~~is~~El~~I~~~k~~~~~~~~~~vP-------~~~i~ts~~vwai~~~~f~~~~~~~~l~-~y~PtY~~~VL~f~v~~  295 (466)
T KOG2532|consen  224 PNISEKELKYIEKGKSEAHVKKKPPVP-------YKAILTSPPVWAIWISAFGGNWGFYLLL-TYLPTYLKEVLGFDVRE  295 (466)
T ss_pred             CCCCHHHHHHHHhcccccccCCCCCCC-------HHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhh
Confidence            1    01000000       0  0112       2367788998876655443333322222 45566654  3567778


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          286 VGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       286 ~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      .|+..++..+...+..+++|.++||
T Consensus       296 ~G~~salP~l~~~~~k~~~g~lsD~  320 (466)
T KOG2532|consen  296 TGFLSALPFLAMAIVKFVAGQLSDR  320 (466)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.77  E-value=1.3e-16  Score=149.51  Aligned_cols=266  Identities=10%  Similarity=-0.009  Sum_probs=162.5

Q ss_pred             hHHHHHHHHHHHHHHHHhHHhhhhhhcCCCCchhH----HHHHHHHHHhhhhhhHHHHHHHhchhhHH----HHHhHHHH
Q 020422           29 DVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI----SLGILYTSFTCFSLVASLVVRVLGSKNAL----ILGTTGYW  100 (326)
Q Consensus        29 ~~~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~----~~~~~~~~~~~~~l~~g~l~d~~Grr~~l----~~g~~~~~  100 (326)
                      ....+++.++..+.++.......+.+.++.+.+..    ..+.......+++++.++++||+||+...    ..+..++.
T Consensus         5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~   84 (382)
T TIGR00902         5 PFRWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFA   84 (382)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            44557777777776665554444444333333332    24455566678889999999999985433    23222222


Q ss_pred             HHHHHhhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 020422          101 LFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (326)
Q Consensus       101 ~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l  180 (326)
                      +. ....+++++.+++.|.++|.+.+...+...++..+            ++++|+++.|......++|.++|+++++.+
T Consensus        85 ~~-~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~------------~~~~~~~~~g~~~~~~slG~~~g~~l~g~l  151 (382)
T TIGR00902        85 AA-FSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANT------------WQKQFGLDYGKVRLIGSAAFIIGSALFGGL  151 (382)
T ss_pred             HH-HHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHH------------HHHHcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            21 11246788888889999999998877776665443            246789999999999999999999998888


Q ss_pred             hcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC-ccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHH
Q 020422          181 LKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE-EDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA  259 (326)
Q Consensus       181 ~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  259 (326)
                      .+.     .+||.. |.+......+. ++.+.++++ +++++++ +    ++..+    .++..+.+|||+++......+
T Consensus       152 ~~~-----~g~~~~-f~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~----~~~~~----~~~~~~~l~~~~~~~~l~~~~  215 (382)
T TIGR00902       152 IGM-----FDEQNI-LAILTAGLAFM-LIGFLIKPTIPPKDAIP-E----DESQG----DSAFIALLKNPMNLRFLAAVC  215 (382)
T ss_pred             HHH-----cChhHH-HHHHHHHHHHH-HHHHHcCCCCCCCcccc-c----ccccc----chhHHHHHcChHHHHHHHHHH
Confidence            654     479874 43333322222 222333432 2211111 0    00111    122346778898887655443


Q ss_pred             HhhHHHHHhhhcccccccccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHhh
Q 020422          260 YSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFHL  323 (326)
Q Consensus       260 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~~  323 (326)
                      ........+.+.+++.+.+.+.+.+++|.......+++.++..+.+++.||  +|+++..+.+...
T Consensus       216 l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~  281 (382)
T TIGR00902       216 LIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACV  281 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHH
Confidence            332222223333333333345566678888888888899999999999999  5666667766554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.77  E-value=6.8e-17  Score=153.10  Aligned_cols=247  Identities=17%  Similarity=0.124  Sum_probs=165.5

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH----hhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA----NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~----~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~  140 (326)
                      .++.+++..++++++++++||+|||..++++.+...+...+    ...+++.+++.+|++.|+..|.......-|+.|.+
T Consensus        66 vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~s  145 (485)
T KOG0569|consen   66 VSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEIS  145 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcC
Confidence            56677777888999999999999999999888765444433    24678999999999999999999999999999998


Q ss_pred             HhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccc-
Q 020422          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK-  219 (326)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~-  219 (326)
                                |++.||....+...+..+|..+|..++..-.-+.   ...|+. ++....+.+++..++..++||+++- 
T Consensus       146 ----------P~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt---~~~W~~-l~~~~~i~~~~~l~~l~~~PESPk~L  211 (485)
T KOG0569|consen  146 ----------PKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGT---EDLWPY-LLAFPLIPALLQLALLPFLPESPKYL  211 (485)
T ss_pred             ----------hhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCC---CcchHH-HHHHHHHHHHHHHHHHhcCCCCcchH
Confidence                      8899999988888788888777766653222111   245765 3444455556666677889997751 


Q ss_pred             ---cc-ccccc----------c-cchhh---chHHH------HHHHHHHhhhcchhHHHHHHHHHhhHHHHH--hhh--c
Q 020422          220 ---GE-KETAD----------A-SVNFY---SYLVS------LSKSITTLLADVRMLLIIPLFAYSGLQQAF--VWA--E  271 (326)
Q Consensus       220 ---~~-~~~~~----------~-~~~~~---~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~--~~~--~  271 (326)
                         +. +++++          . +...+   ...++      +..++++.++++..+.-....+...+.+.+  ...  .
T Consensus       212 l~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~  291 (485)
T KOG0569|consen  212 LIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFF  291 (485)
T ss_pred             HHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHH
Confidence               11 11100          0 00000   00000      111355777887777643322222222222  111  1


Q ss_pred             cccc-ccccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHhhcC
Q 020422          272 FTKE-IVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFHLSL  325 (326)
Q Consensus       272 ~~~~-~~~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~~~~  325 (326)
                      |... +.+.++..+..-++....++.+.+.++++..+.||  ||++++.+...+.++
T Consensus       292 Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~  348 (485)
T KOG0569|consen  292 YSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVA  348 (485)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            2222 23446666778889999999999999999999999  999999998877654

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.77  E-value=1.8e-16  Score=147.35  Aligned_cols=225  Identities=12%  Similarity=-0.019  Sum_probs=135.2

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHHH-HhHHHHHHHHH-hhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALIL-GTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~~-g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      +.......+.+++.|.++||+|||+.++. +.+..++.... ..+++++.+++.|.++|.+.+...+...++..++.   
T Consensus        40 ~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~---  116 (375)
T TIGR00899        40 TGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHA---  116 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh---
Confidence            33334456678889999999999887665 44444444443 36788888888899998888877777666666664   


Q ss_pred             hhhcCCCcccchhhH--HHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHH-HHhccCCcccc
Q 020422          144 ASNHKLHEGTVIGSF--NGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKG  220 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~--~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il-~~~l~~~~~~~  220 (326)
                             |+++|++.  .++...+.++|..+|+.+++.+.+.     .+||+. |++.+.+.++..++ .+++||+++++
T Consensus       117 -------~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-----~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~  183 (375)
T TIGR00899       117 -------DRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG-----FGFTVM-FLTAALAFVLCGVLVWLFLPSYPRGA  183 (375)
T ss_pred             -------hhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh-----cccHHH-HHHHHHHHHHHHHHHHHhCCCcccCc
Confidence                   44555543  6777778889999999988877643     479873 55555554444333 35577754322


Q ss_pred             ccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCcchHHHHHHHHHHHHH
Q 020422          221 EKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAFDA  298 (326)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~gi~~~  298 (326)
                      +++.      ++.+    .   .+.+++++++.+....+............+ +.+..  .+.+.++.+.......+...
T Consensus       184 ~~~~------~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~g~~~~~~~~~~~  249 (375)
T TIGR00899       184 PGAL------TRLE----V---RGLLASRDTRLLFVACTLMWGCNILYIINM-PLLIIHELGLPDKLAGLMMGTAAGLEI  249 (375)
T ss_pred             cccc------Ccch----h---hhhhcCcchHHHHHHHHHHHHHHHHHHhhh-HHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            1110      0111    1   123456665543332221111111111122 22222  24555667777766666777


Q ss_pred             HHHHHhhhhhhh--hhhHHhHHHH
Q 020422          299 ISLLGFATFFSV--HSLLVGLPLV  320 (326)
Q Consensus       299 ~g~~~~G~l~Dr--R~~~~~~g~~  320 (326)
                      ++..+.|+++||  ||+.+..+.+
T Consensus       250 ~~~~~~g~l~~r~g~~~~~~~~~~  273 (375)
T TIGR00899       250 PFMLLAGYLIKRFGKRRLMLLAAL  273 (375)
T ss_pred             HHHHhHHHHHHHhcchhHHHHHHH
Confidence            788999999999  6665555443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.77  E-value=8.1e-17  Score=147.36  Aligned_cols=208  Identities=15%  Similarity=0.166  Sum_probs=148.4

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        64 ~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      ..+.......+++++.|+++||+|||+.+..+.++..+..... ..++++.++++|++.|++.+..++...+++.|+.  
T Consensus        39 ~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--  116 (352)
T cd06174          39 IVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWF--  116 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhC--
Confidence            3555666778889999999999999999999998887776654 5688899999999999999999999999999986  


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcccccc
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEK  222 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~  222 (326)
                              |+|+|++..++.....++|..+|+.++..+.+.     .+||.. +.+..+..+++.++..+++        
T Consensus       117 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~--------  174 (352)
T cd06174         117 --------PPKERGRALGLFSAGFGLGALLGPLLGGLLAES-----LGWRWL-FLILAILGLLLALLLLFLL--------  174 (352)
T ss_pred             --------CccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----hhHHHH-HHHHHHHHHHHHHHHHHHH--------
Confidence                    778999999999999999999999998887653     357763 4444444444444443333        


Q ss_pred             ccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccccccc--ccCcchHHHHHHHHHHHHHHH
Q 020422          223 ETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAIS  300 (326)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~gi~~~~g  300 (326)
                                                |+++......+.......... .+.+.+..+  +.+..+.+......+++..++
T Consensus       175 --------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  227 (352)
T cd06174         175 --------------------------RLLLLLALAFFLLSFGYYGLL-TYLPLYLQEVLGLSAAEAGLLLSLFGLGGILG  227 (352)
T ss_pred             --------------------------HHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence                                      111222111111111111111 122222222  455667889999999999999


Q ss_pred             HHHhhhhhhh--hhh-HHhHHHHHh
Q 020422          301 LLGFATFFSV--HSL-LVGLPLVFH  322 (326)
Q Consensus       301 ~~~~G~l~Dr--R~~-~~~~g~~~~  322 (326)
                      ..+.|+++||  ||+ .+..+.+..
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~  252 (352)
T cd06174         228 ALLGGLLSDRLGRRRLLLLIGLLLA  252 (352)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            9999999999  666 666555544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00901 2A0125 AmpG-related permease

Probab=99.76  E-value=4.1e-16  Score=144.50  Aligned_cols=227  Identities=9%  Similarity=0.042  Sum_probs=137.6

Q ss_pred             hhhHHHHHHHh-----chhhHH-HHHhHHHHHHHHHh-hh---hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhh
Q 020422           76 SLVASLVVRVL-----GSKNAL-ILGTTGYWLFVAAN-LF---PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS  145 (326)
Q Consensus        76 ~l~~g~l~d~~-----Grr~~l-~~g~~~~~~~~~~~-~~---~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~  145 (326)
                      .++.|+++||+     |||+.+ +.+.+..++..... +.   .+.+.+...+++.|++.+...++..+++.|+.     
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~-----  112 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEIL-----  112 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence            88999999998     899975 55666555554332 33   34555666677888888888888888898886     


Q ss_pred             hcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC---CCCCCchhHHHHHHHHHHHHHHHHHH-hccCCccccc
Q 020422          146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSGTTLLFIVFLGVITLGTILMC-FLRKEEDKGE  221 (326)
Q Consensus       146 ~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~---~~~~~wr~~~f~~~~~~~~l~~il~~-~l~~~~~~~~  221 (326)
                           |+++|+++.|+...+..+|..+|+.++..+.....   ...++||.. |++.++..++..++.+ ..||+.++++
T Consensus       113 -----~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~-f~i~ai~~l~~~~~~~~~~~e~~~~~~  186 (356)
T TIGR00901       113 -----SDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI-FFWTALLILPGLLVTLFLAKEPQEDAS  186 (356)
T ss_pred             -----CHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH-HHHHHHHHHHHHHHHHHhccCCCcccc
Confidence                 88999999999999999999999998877654321   112349874 5555554444444433 3466433211


Q ss_pred             cccccccchhhchHHHHHHHHHHhhhcch---hHHHHHHHHHhhHHHHHhhhcccccccccccCcchHHHHHHHHH-HHH
Q 020422          222 KETADASVNFYSYLVSLSKSITTLLADVR---MLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYG-AFD  297 (326)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g-i~~  297 (326)
                       +++    ++..+.++.+   .+.++++.   .+.+....+............+++.....+.+.++.+......+ ++.
T Consensus       187 -~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~  258 (356)
T TIGR00901       187 -VPK----PLTQAVLKPI---REFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGA  258 (356)
T ss_pred             -cch----hHHHHHHHHH---HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHH
Confidence             100    0111222222   23445554   44433332222222222222233333223455667787777666 467


Q ss_pred             HHHHHHhhhhhhh--hhhHHhHHHHH
Q 020422          298 AISLLGFATFFSV--HSLLVGLPLVF  321 (326)
Q Consensus       298 ~~g~~~~G~l~Dr--R~~~~~~g~~~  321 (326)
                      .++.+++|+++||  ||+.++.+.++
T Consensus       259 ~~g~~~~g~l~~r~g~~~~l~~~~~~  284 (356)
T TIGR00901       259 ILGGLIGGIIMQPLNILYALLLFGIV  284 (356)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            7899999999999  66665555544

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.75  E-value=8.5e-17  Score=147.20  Aligned_cols=261  Identities=12%  Similarity=0.064  Sum_probs=168.2

Q ss_pred             CccccchhHHHHHHHHHHHHHHHHhHHhhhhhhcCCCCchhHHHHHHH----HHHhhhhhhHHHHHHHhchhhHHHHHhH
Q 020422           22 TPKNYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILY----TSFTCFSLVASLVVRVLGSKNALILGTT   97 (326)
Q Consensus        22 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~----~~~~~~~l~~g~l~d~~Grr~~l~~g~~   97 (326)
                      +++...||.++-.+.+...|......+.+...++.+.+++....+.+.    ++-++.-++.|.+.||||.|++...+.+
T Consensus         8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~   87 (417)
T COG2223           8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSML   87 (417)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHH
Confidence            455677788877777777777777777777777766655554433333    3445556789999999999999999988


Q ss_pred             HHHHHHHHh-h---hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHH
Q 020422           98 GYWLFVAAN-L---FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG  173 (326)
Q Consensus        98 ~~~~~~~~~-~---~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G  173 (326)
                      +..+-+... +   .++++.+++.+++.|++.|-+-.+ ..+++.++          |||++|.+.|++. ..++|..+.
T Consensus        88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~-m~~~s~~f----------P~~~qG~AlGI~g-~GN~G~av~  155 (417)
T COG2223          88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVG-MPNASFFF----------PKEKQGLALGIAG-AGNLGVAVA  155 (417)
T ss_pred             HHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcc-cccccccC----------ChhhhhHHHHHhc-cccccHHHH
Confidence            766644432 2   456679999999999999865444 45777776          8999999999998 777888777


Q ss_pred             HHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHH-HHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhH
Q 020422          174 NLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT-ILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRML  252 (326)
Q Consensus       174 ~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~-il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (326)
                      ..++..+.....  ...|+.. -.++....++.. ..++.+.|.++.+. ..+     +..+  .   +++...++++.|
T Consensus       156 q~~~P~v~~~~g--~~~w~~~-~~i~~~~l~v~~v~~~~~~~d~p~~r~-~~~-----~~~~--~---~~~~v~~~~~~W  221 (417)
T COG2223         156 QLVAPLVAVAFG--FLAWRNV-AGIYVVALAIAAVLAWLGMNDVPEHRA-SVK-----PQLP--A---QLKAVFSNKDTW  221 (417)
T ss_pred             HHHHHHHHHHHh--hHHHHHH-HHHHHHHHHHHHHHHHHHhCCChhhhc-ccc-----ccch--h---HHHHHhcCcchH
Confidence            777665544320  0027663 333444444433 34455666444211 100     0000  2   223556788888


Q ss_pred             HHHHHHHHh-hHHHHHhhhccccccccc--ccCcchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          253 LIIPLFAYS-GLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       253 ~l~~~~~~~-g~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      .+....+.+ |-...+ . .+.+++..+  +.+....|.....+.+.+.+...++|+++||
T Consensus       222 ~lsllY~~tFG~Fvgf-s-~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR  280 (417)
T COG2223         222 LLSLLYFATFGGFVGF-S-AYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDR  280 (417)
T ss_pred             HHHHHHHHHHHHHHHH-H-HHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhh
Confidence            877654433 222222 2 233343333  3445566777888888888999999999999

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.75  E-value=1.3e-15  Score=143.68  Aligned_cols=224  Identities=12%  Similarity=0.090  Sum_probs=141.1

Q ss_pred             hhhhhhHHHHHHHh-----chhh-HHHHHhHHHHHHHHH-hhh---hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           73 TCFSLVASLVVRVL-----GSKN-ALILGTTGYWLFVAA-NLF---PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        73 ~~~~l~~g~l~d~~-----Grr~-~l~~g~~~~~~~~~~-~~~---~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      .+.+++.|+++||+     |||+ .+.++.++.++.... .+.   ++++.++...++.++..+...++..+++.++.  
T Consensus        46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~--  123 (402)
T PRK11902         46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVL--  123 (402)
T ss_pred             HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            46788999999999     8876 677766666554443 233   35666777777888888888888888899886  


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcccccc
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEK  222 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~  222 (326)
                              |++||+++.++...+.++|..+|+.++..+....    .+||.. |++.++..++..+..+++||+++++++
T Consensus       124 --------~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~----~gw~~~-f~i~a~~~l~~~l~~~~~~e~~~~~~~  190 (402)
T PRK11902        124 --------HPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV----LGWGNT-YLLMAGLMLAGALTTLWAPEPEVPARP  190 (402)
T ss_pred             --------ChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc----cCHHHH-HHHHHHHHHHHHHHHHhcCCCcccccc
Confidence                    8889999999999999999999988877765421    379874 545455444444444566765432211


Q ss_pred             ccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc-cccCcchHHHHHHHHHH-HHHHH
Q 020422          223 ETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGA-FDAIS  300 (326)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~gi-~~~~g  300 (326)
                      ++     +.+.+.   .++..+.+|+|.++.+....+.......+.....++.+.. .+.+.++.++.+...+. +..++
T Consensus       191 ~~-----~~~~~~---~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g  262 (402)
T PRK11902        191 PR-----SLGEAV---VGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVG  262 (402)
T ss_pred             cc-----hhHHHH---HHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHH
Confidence            10     001111   2234466788887765443332222211111122222222 34556677887766554 57889


Q ss_pred             HHHhhhhhhh--hhhHHhHHH
Q 020422          301 LLGFATFFSV--HSLLVGLPL  319 (326)
Q Consensus       301 ~~~~G~l~Dr--R~~~~~~g~  319 (326)
                      ..++|++.||  ||+.+..+.
T Consensus       263 ~~~~g~l~~r~g~~~~l~~~~  283 (402)
T PRK11902        263 ALAGGTLMVRLGLYRSLMLFG  283 (402)
T ss_pred             HHHHHHHHHHHhHHHHHHHHH
Confidence            9999999999  455444433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.75  E-value=4e-16  Score=146.24  Aligned_cols=263  Identities=12%  Similarity=-0.025  Sum_probs=153.3

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhhcCCCCchhH----HHHHHHHHHhhhhhhHHHHHHHhchh----hHHHHHhHHHHHHHH
Q 020422           33 LSCAFLLIFLAYGAAQNLETTVNTEGNLGTI----SLGILYTSFTCFSLVASLVVRVLGSK----NALILGTTGYWLFVA  104 (326)
Q Consensus        33 l~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~----~~~~~~~~~~~~~l~~g~l~d~~Grr----~~l~~g~~~~~~~~~  104 (326)
                      ....+++.+.++.......+....+.+.+..    ..+...+...+++++.|++.||+|||    +.+.++..+..+ ..
T Consensus         9 ~~~~~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~   87 (382)
T PRK11128          9 LALSYFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAV-AF   87 (382)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHH-HH
Confidence            3444555555544443332223223232222    24555556677789999999999983    333333222211 11


Q ss_pred             HhhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCC
Q 020422          105 ANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD  184 (326)
Q Consensus       105 ~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~  184 (326)
                      ....++++.++..|.+.|++.+..++...++..++            +++|+++.+......++|..+||++++.+... 
T Consensus        88 ~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~------------~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~-  154 (382)
T PRK11128         88 WFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW------------QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW-  154 (382)
T ss_pred             HHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH------------HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH-
Confidence            22457888888899999999998888766666554            24577878888888899999999999888654 


Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHH
Q 020422          185 KGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQ  264 (326)
Q Consensus       185 ~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  264 (326)
                          .+||.. |++..+..++..+..++.||++++++++      ++.++.   .++..+.+|||+++......+..+..
T Consensus       155 ----~g~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~---~~~~~~i~~~~~~~~~~~~~~l~~~~  220 (382)
T PRK11128        155 ----FGEQAI-LWILTAGVASMLLGQLLRPTIMPQGESR------QQESAG---WPAWKALLKEPTVWRFLLCVSLLQGS  220 (382)
T ss_pred             ----cChhHH-HHHHHHHHHHHHHHHHccCCCCCccccc------cccccc---cchHHHHHcChhHHHHHHHHHHHHHH
Confidence                479874 4444433333333333444432211111      000000   12234677888888655443333322


Q ss_pred             HHHhhhcccccccccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHhh
Q 020422          265 QAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFHL  323 (326)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~~  323 (326)
                      .......++++..+.+.+.+..|.......++..++..+.|++.||  +|+.+..+.+...
T Consensus       221 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~  281 (382)
T PRK11128        221 HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGV  281 (382)
T ss_pred             hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence            2222222333332234555577888888888888889999999999  5665665655443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.74  E-value=6.6e-16  Score=145.39  Aligned_cols=271  Identities=14%  Similarity=0.092  Sum_probs=150.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHhh-----hhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHH
Q 020422           28 RDVHILSCAFLLIFLAYGAAQNL-----ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (326)
Q Consensus        28 ~~~~~l~l~~~~~~~~~~~~~~l-----~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~  102 (326)
                      ++.+.+....++++.++......     .++++.+...-....++..++..+++++.|+++||+|||+.++.+.+++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~   81 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVL   81 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            35566666666665555443322     2223333222223356666777888999999999999999998877665443


Q ss_pred             HHHh----hhh-----hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHH
Q 020422          103 VAAN----LFP-----SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG  173 (326)
Q Consensus       103 ~~~~----~~~-----~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G  173 (326)
                      ....    ..+     .+...++.|++.|++.+...+....+..+..            +++++..|......++|..+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------------~~~~~~~g~~~~~~~~g~~~g  149 (396)
T TIGR00882        82 FAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS------------RNSNFEYGKARMFGCVGWALC  149 (396)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh------------hhcccccchhhhhcccHHHHH
Confidence            3221    111     2334455677888887776666555554432            234556666677778999999


Q ss_pred             HHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh-ccCCccccccccccccchhhchHHHHHHHHHHhhhcchhH
Q 020422          174 NLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF-LRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRML  252 (326)
Q Consensus       174 ~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (326)
                      +++++.+..      .+|+. .|++.+.+.++..++.++ .+|++++++.+.+...++++    ++.++..+.+|||+++
T Consensus       150 ~~~~g~l~~------~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~  218 (396)
T TIGR00882       150 ASIAGILFS------IDPQI-VFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASA----FSLKLALELFRQRKFW  218 (396)
T ss_pred             HHHHhhhhc------cCchH-HHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCC----CCHHHHHHHHcCCcHH
Confidence            999876642      36876 354545555544433333 33332211111000000011    1123345677888876


Q ss_pred             HHHHHHHHhhHHHHH---hhhccccccc-ccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHH
Q 020422          253 LIIPLFAYSGLQQAF---VWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVF  321 (326)
Q Consensus       253 ~l~~~~~~~g~~~~~---~~~~~~~~~~-~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~  321 (326)
                      ......+........   ....|.+.+. .++.+.+..|.......+...++....|++.||  ||+.++.+.++
T Consensus       219 ~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l  293 (396)
T TIGR00882       219 MFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTI  293 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence            554432222111111   1112222221 123344567888888888889999999999999  66666665543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.74  E-value=1e-17  Score=151.64  Aligned_cols=225  Identities=17%  Similarity=0.119  Sum_probs=167.2

Q ss_pred             CCchhHHHHHHHHHHhhhh----hhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhh
Q 020422           58 GNLGTISLGILYTSFTCFS----LVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGE  132 (326)
Q Consensus        58 ~~~g~~~~~~~~~~~~~~~----l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~  132 (326)
                      .+..+...++++..+++.|    ++.|.+.||+|+|..+++|.+.....++.+ +..+++.++++|.+||+|.+..+++.
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence            4455556778888887776    567899999999999999999988888876 78899999999999999999999999


Q ss_pred             hHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 020422          133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF  212 (326)
Q Consensus       133 ~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~  212 (326)
                      .+.+++.++         +++|||+++|+...+.++|-.+||.+++++.+..     | ....|++.+.+.++...+-++
T Consensus       181 lamlAd~f~---------~d~er~~vmGialgfislG~lvgPpfGGilYe~~-----G-k~aPFlVL~~v~Lld~~L~l~  245 (464)
T KOG3764|consen  181 LAMLADVFP---------EDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-----G-KSAPFLVLAIVLLLDGALQLL  245 (464)
T ss_pred             HHHHHHHcc---------cchhhhHHHHHHHHHHhccceecCCcccchHhhc-----C-CcCcHHHHHHHHHHHHHHHHh
Confidence            999988863         6778999999999999999999999999987653     2 344688888888776666666


Q ss_pred             ccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccccC-cc-hHHHHH
Q 020422          213 LRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG-VS-GVGGAM  290 (326)
Q Consensus       213 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~-~~g~~~  290 (326)
                      +-|+.+.++++.     .+.++       +++.++||..+........+++..++.-..+ +.+..+.+. +. ++|.+.
T Consensus       246 vi~p~~~~~~~~-----~~~~~-------~~~Ll~dP~I~~~agai~~~n~~lafLePtl-slwm~e~m~~p~w~~G~~f  312 (464)
T KOG3764|consen  246 VIEPTEMDPDST-----EQGTP-------MWSLLMDPYILLIAGAITFSNSSLAFLEPTL-SLWMLETMFTPGWEVGLAF  312 (464)
T ss_pred             eeCccccCcccc-----ccCcc-------HHHHHhCchHhhhhcchhhccchHHHhCccc-HHHHHHhccCCCcceeeee
Confidence            555433222110     11222       3467788998886655556666666643222 222223332 33 567777


Q ss_pred             HHHHHHHHHHHHHhhhhhhh
Q 020422          291 AVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       291 ~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      ....+.-.+++.+.|.++||
T Consensus       313 Lp~~~~y~ig~~lfg~la~k  332 (464)
T KOG3764|consen  313 LPASLSYAIGTNLFGKLADK  332 (464)
T ss_pred             cccccchhccCchHHHHHHh
Confidence            77788888999999999999

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.73  E-value=4.6e-16  Score=147.63  Aligned_cols=275  Identities=13%  Similarity=0.060  Sum_probs=145.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhHH-hhhhhhcCCCCchh----HHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHH
Q 020422           28 RDVHILSCAFLLIFLAYGAAQ-NLETTVNTEGNLGT----ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (326)
Q Consensus        28 ~~~~~l~l~~~~~~~~~~~~~-~l~~~l~~~~~~g~----~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~  102 (326)
                      ++.+.+.+.+++.+.++.... .+...+..+.+.+.    ...++......+++++.|+++||+|||++++++..+.++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~   89 (420)
T PRK09528         10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVL   89 (420)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            456666666666655544332 22222222222222    2356666777888999999999999999998876655443


Q ss_pred             HHHhh----hhhhH-HHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHH
Q 020422          103 VAANL----FPSWY-TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT  177 (326)
Q Consensus       103 ~~~~~----~~~~~-~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~  177 (326)
                      .....    .+.+. .......+.|+..+..+.+....+.++.++        .++++|+.+|......++|..+|+.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~g~~~~~~~~g~~i~~~~~  161 (420)
T PRK09528         90 FGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER--------VSRRSGFEYGRARMWGSLGWALCAFIA  161 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH--------HHhhccccchhhHHhhhHHHHHHHHHH
Confidence            32111    11111 011122333433333333322223333322        134567788888888899999999998


Q ss_pred             HHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHH
Q 020422          178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPL  257 (326)
Q Consensus       178 ~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  257 (326)
                      +.+..      .+|+. .|.+..+..++..++.+++++++++++++.++.+.+++   +...++..+.+|||+++.+...
T Consensus       162 g~l~~------~~~~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~l~l~  231 (420)
T PRK09528        162 GILFN------INPQI-NFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANAS---AVSLKDALALLKLPKFWFLVLY  231 (420)
T ss_pred             HHHHh------cCchH-hHHHHHHHHHHHHHHHhcccccccchhhhccchhcccc---cccHHHHHHHccCCCeEeehHH
Confidence            77753      25765 35554555555444444444333222111000000011   1123444567788887654433


Q ss_pred             HHHhhHHHHHhhhccccc----ccccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHH
Q 020422          258 FAYSGLQQAFVWAEFTKE----IVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLV  320 (326)
Q Consensus       258 ~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~  320 (326)
                      ..............++..    +.+.+.+.+..+.+.....++..++.++.|+++||  ||+.+..+.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  300 (420)
T PRK09528        232 VIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGT  300 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence            222221111111112211    11223444567888888888999999999999999  6665555444

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.73  E-value=3.9e-16  Score=152.02  Aligned_cols=245  Identities=16%  Similarity=0.080  Sum_probs=154.6

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      .+..+++-+++++++|+++|++|||++++++.+.+.+..+.. .++|+..++++|++.|+|.|........|++|++   
T Consensus        95 ~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEia---  171 (513)
T KOG0254|consen   95 TSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIA---  171 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcC---
Confidence            456666778889999999999999999999999998887765 8899999999999999999999999999999997   


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcccc---
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKG---  220 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~---  220 (326)
                             |++.||...+.++....+|..+|..++...-..    ..+||.. +.+..+.+++-.+..+++||+++..   
T Consensus       172 -------p~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~----~~~Wr~~-~~~~~i~~~~~~~~~~~~pesp~~L~~~  239 (513)
T KOG0254|consen  172 -------PAHIRGTLVSLYQLFITIGILLGYCINYGTSKV----YAGWRIP-LGLALIPAVILALGMLFLPESPRWLIEK  239 (513)
T ss_pred             -------ChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC----CccHHHH-HHHHHHHHHHHHHHHHhCCCChHHHHHc
Confidence                   889999999999888888888885555444211    1479864 4343444444334477888876521   


Q ss_pred             -cccccc-------c--cchhh---chHHHH-HHH--------HHHhhhcchhHH-HHHHHHHhhHHHHH---hhhcccc
Q 020422          221 -EKETAD-------A--SVNFY---SYLVSL-SKS--------ITTLLADVRMLL-IIPLFAYSGLQQAF---VWAEFTK  274 (326)
Q Consensus       221 -~~~~~~-------~--~~~~~---~~~~~~-~~~--------~~~~~~~~~~~~-l~~~~~~~g~~~~~---~~~~~~~  274 (326)
                       +.+..+       .  +.+..   ...+.+ ..+        .++.+..|+.+. .........+++..   ....|.+
T Consensus       240 g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~  319 (513)
T KOG0254|consen  240 GRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYST  319 (513)
T ss_pred             CChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehH
Confidence             100000       0  00000   000100 000        011111122222 22222222222211   1112333


Q ss_pred             cccccccCcchH-HHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHhhcC
Q 020422          275 EIVTPALGVSGV-GGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFHLSL  325 (326)
Q Consensus       275 ~~~~~~~~~~~~-g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~~~~  325 (326)
                      .+.. ..+.+.. .......++...++..++..+.||  ||++++.|...+..|
T Consensus       320 ~if~-~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~  372 (513)
T KOG0254|consen  320 TIFK-SAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSIC  372 (513)
T ss_pred             HHHH-hcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHH
Confidence            3322 2222211 555667788888899999999999  999999888776654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.70  E-value=2.7e-15  Score=145.07  Aligned_cols=180  Identities=8%  Similarity=0.017  Sum_probs=122.3

Q ss_pred             cccCccccchhHHHHHHHHHHHHHHHH-hHH----hhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHH-hchhhHH
Q 020422           19 QVLTPKNYTRDVHILSCAFLLIFLAYG-AAQ----NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRV-LGSKNAL   92 (326)
Q Consensus        19 ~~~~~~~~~~~~~~l~l~~~~~~~~~~-~~~----~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~-~Grr~~l   92 (326)
                      .|.|.++.+|.++.+....+..-.+|. ...    .++++++.+.+...+..+.......+..+++|+++|| +|||+++
T Consensus         5 ~~~~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~   84 (489)
T PRK10207          5 APMGLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI   84 (489)
T ss_pred             CCcchhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH
Confidence            567777777888877766555533333 222    3334444332222222333333445556789999999 9999999


Q ss_pred             HHHhHHHHHHHHHh-hhhh-hHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCccc--chhhHHHHHHHHHHH
Q 020422           93 ILGTTGYWLFVAAN-LFPS-WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGT--VIGSFNGEFWGMFAS  168 (326)
Q Consensus        93 ~~g~~~~~~~~~~~-~~~~-~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~--~rg~~~gi~~~~~~~  168 (326)
                      ++|.+++++..... +.++ ...++++|+++|+|.|...++..+.+++.+          |++  +|++++++++.+.++
T Consensus        85 ~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~----------p~~~~~~~~~~~~~~~~~ni  154 (489)
T PRK10207         85 VLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCY----------PPKDPRLDGAFTLFYMSINI  154 (489)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhc----------CCCchhhhcchhHHHHHHHH
Confidence            99999998877654 5544 334557899999999999998888999887          444  568899999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 020422          169 HQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR  214 (326)
Q Consensus       169 g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~  214 (326)
                      |..+|+.+++.+.+.     .|||+. |++..+..+++++...+.+
T Consensus       155 g~~~g~~l~g~l~~~-----~gw~~~-F~i~~i~~~~~~~~~~~~~  194 (489)
T PRK10207        155 GSLISLSLAPVIADK-----FGYSVT-YNLCGAGLIIALLVYFACR  194 (489)
T ss_pred             HHHHHHHHHHHHHHh-----hChHHH-HHHHHHHHHHHHHHHHHcc
Confidence            999999999888664     479874 4443322233333333444

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.67  E-value=4.2e-14  Score=133.11  Aligned_cols=215  Identities=13%  Similarity=0.052  Sum_probs=117.6

Q ss_pred             HHhhhhhhHHHHHHHhchhhHHHH-HhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcC
Q 020422           71 SFTCFSLVASLVVRVLGSKNALIL-GTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (326)
Q Consensus        71 ~~~~~~l~~g~l~d~~Grr~~l~~-g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~  148 (326)
                      .+.++++++++ .||+|||+.++. +.+..++..... ++++++.+++.+.+.|...+..++....+..+..        
T Consensus        64 ~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------  134 (393)
T PRK15011         64 GILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHA--------  134 (393)
T ss_pred             HHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh--------
Confidence            44455555666 999999987654 444444444333 5677777665555555445566666666666553        


Q ss_pred             CCcccch--hhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHH-HHhccCCccccccccc
Q 020422          149 LHEGTVI--GSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKGEKETA  225 (326)
Q Consensus       149 ~~~~~~r--g~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il-~~~l~~~~~~~~~~~~  225 (326)
                        ++++|  +...++...+.++|..+|+++++.+.+.     .|||. .|.+.++..++..++ .+++||++++++++. 
T Consensus       135 --~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~-----~gw~~-~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  205 (393)
T PRK15011        135 --DKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG-----FSFTV-MYLSAAVAFIVCGVMVWLFLPSMRKELPLAT-  205 (393)
T ss_pred             --hhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-----cChHH-HHHHHHHHHHHHHHHHHhhcCccCCCCcccc-
Confidence              33333  4455778888899999999999887653     47986 455555544443333 445676543221110 


Q ss_pred             cccchhhchHHHHHHHHHHhhhcch-hHHHHHH-HHHhhHHHHHhhhccccccccc--ccCcchHHHHHHHHHHHHHHHH
Q 020422          226 DASVNFYSYLVSLSKSITTLLADVR-MLLIIPL-FAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAISL  301 (326)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~-~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~gi~~~~g~  301 (326)
                           +  + .+..+      ++++ .+..... ....+.... +. .+.|.+..+  +.+..+.+.......++..++.
T Consensus       206 -----~--~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~-~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~  269 (393)
T PRK15011        206 -----G--T-LEAPR------RNRRDTLLLFVICTLMWGTNSL-YI-INMPLFIINELHLPEKLAGVMMGTAAGLEIPTM  269 (393)
T ss_pred             -----c--c-ccccc------cccccHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence                 0  0 00000      1222 1111111 111111111 11 222333222  3455567777766667778889


Q ss_pred             HHhhhhhhh--hhhHHhHHH
Q 020422          302 LGFATFFSV--HSLLVGLPL  319 (326)
Q Consensus       302 ~~~G~l~Dr--R~~~~~~g~  319 (326)
                      ++.|+++||  ||+.+..+.
T Consensus       270 ~~~G~l~dr~g~~~~~~~~~  289 (393)
T PRK15011        270 LIAGYFAKRLGKRFLMRVAA  289 (393)
T ss_pred             HHHHHHHHHhChHHHHHHHH
Confidence            999999999  665555544

>TIGR00889 2A0110 nucleoside transporter

Probab=99.67  E-value=3e-14  Score=135.30  Aligned_cols=270  Identities=10%  Similarity=-0.033  Sum_probs=153.2

Q ss_pred             HHHHHHHHHHHHHHHhH-HhhhhhhcCCCCchh----HHHHHHHHHHhhhhhhHHHHHHHhch-hhHHHHHhHHHHHHHH
Q 020422           31 HILSCAFLLIFLAYGAA-QNLETTVNTEGNLGT----ISLGILYTSFTCFSLVASLVVRVLGS-KNALILGTTGYWLFVA  104 (326)
Q Consensus        31 ~~l~l~~~~~~~~~~~~-~~l~~~l~~~~~~g~----~~~~~~~~~~~~~~l~~g~l~d~~Gr-r~~l~~g~~~~~~~~~  104 (326)
                      .-+++.+++.+..+... ..+...+.++.+.+.    +-.++...+..+++++.|.++||+|| |+++.++.++.++...
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~   84 (418)
T TIGR00889         5 AKLKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLF   84 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            34566666666655543 233333322222222    22466667778889999999999965 7788877776655554


Q ss_pred             Hh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 020422          105 AN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       105 ~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~  183 (326)
                      .. +.++++.+.+.|++.|++.++..+...+.......++.  +|......|.|..|      .+|..+|+++++.+...
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g--~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~  156 (418)
T TIGR00889        85 FAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAG--LDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIE  156 (418)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcC--CCchhcCCCeeeeh------hHHHHHHHHHHHHhccc
Confidence            43 56788888889999999887776655443333322111  01113334566666      36778888877665221


Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhchHHHHH-HHHHHhhhcchhHHHHHHHHHhh
Q 020422          184 DKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLS-KSITTLLADVRMLLIIPLFAYSG  262 (326)
Q Consensus       184 ~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g  262 (326)
                           ..|+.  |.+..+..++..++.+++||++++++++  +      .+.+++. .+..+.+|+|+++.+....+..+
T Consensus       157 -----~~~~~--f~~~~~~~~~~~~~~~~~~e~~~~~~~~--~------~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~  221 (418)
T TIGR00889       157 -----LSNIQ--LYITAGSSALLGVFALTLPDIPVAKSTA--K------MSIKVMLGLDAFILFKNKRMAIFFFFSMLLG  221 (418)
T ss_pred             -----chhHH--HHHHHHHHHHHHHHHhcCCCCCCCcccc--c------cCHHHHhhhhHHHHhcCCCeeeHHHHHHHHH
Confidence                 23443  4444444444444556677753221111  0      0111110 12235678888776555544443


Q ss_pred             HHHHHhhhcccccccccc--------cCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHhh
Q 020422          263 LQQAFVWAEFTKEIVTPA--------LGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFHL  323 (326)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~~  323 (326)
                      .........+++...+.+        ...+..+..+....+...++..+.|+++||  ||+++..+.++..
T Consensus       222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~  292 (418)
T TIGR00889       222 APLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWA  292 (418)
T ss_pred             hHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            322222222222221111        234567888888899999999999999999  7777766665543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.66  E-value=1.3e-14  Score=140.08  Aligned_cols=263  Identities=13%  Similarity=0.035  Sum_probs=163.0

Q ss_pred             HHHHHHHHHHHHHHHHh---HH----hhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHH
Q 020422           30 VHILSCAFLLIFLAYGA---AQ----NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (326)
Q Consensus        30 ~~~l~l~~~~~~~~~~~---~~----~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~  102 (326)
                      |+++..+|+.....+..   .+    .++++++.+.+...+..++...+..++.++.+.+.||+|.|.+.++|.++.++.
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g  124 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALG  124 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHH
Confidence            44444445444433332   22    344444444444444567777788888999999999999999999999988876


Q ss_pred             HHH-hhhhhhHH-HHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 020422          103 VAA-NLFPSWYT-MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (326)
Q Consensus       103 ~~~-~~~~~~~~-l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l  180 (326)
                      .+. .++++.+. ++...++.|+|.|+.+..+...+..+           .+++|+.+.|+-..+..+|.++=+.+...+
T Consensus       125 ~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~Y-----------F~kkR~lA~Gia~~GsG~G~~~~~~l~~~l  193 (509)
T KOG2504|consen  125 LLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTY-----------FEKKRALATGIAVSGTGVGTVVFPPLLKYL  193 (509)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhH-----------hHHHHHHHHhhhhccCCcceeeHHHHHHHH
Confidence            665 47777654 44568999999999999888888766           678999999999888888877766666565


Q ss_pred             hcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCc-ccc----------------------ccccccccc-h------
Q 020422          181 LKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE-DKG----------------------EKETADASV-N------  230 (326)
Q Consensus       181 ~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~-~~~----------------------~~~~~~~~~-~------  230 (326)
                      ...     .|||.. ++++..+.+-.++..+.+++.. +.+                      +...++... .      
T Consensus       194 ~~~-----~G~r~~-~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (509)
T KOG2504|consen  194 LSK-----YGWRGA-LLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSN  267 (509)
T ss_pred             HHH-----hCcHHH-HHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccc
Confidence            543     479885 3344554443444444444311 100                      000000000 0      


Q ss_pred             ------hhchH---HHHHHHH---HHhhhcchhHHHHHHHHHhhHHHHHhhhcccccc-cccccCcchHHHHHHHHHHHH
Q 020422          231 ------FYSYL---VSLSKSI---TTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEI-VTPALGVSGVGGAMAVYGAFD  297 (326)
Q Consensus       231 ------~~~~~---~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~gi~~  297 (326)
                            .+..+   .++....   .+.++|+.++.+.....+.-+..... ..+.+.+ .+.+.+.++...++...++.+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p-~~~l~~~~~~~g~~~~~aa~l~Siigi~~  346 (509)
T KOG2504|consen  268 LATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVP-FVYLPSYAKSLGLSSNDAAFLLSIIGVSD  346 (509)
T ss_pred             hhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCChhhhHHHHHHHHHhh
Confidence                  00000   1111111   36788888877654433222111111 1222332 244566668899999999999


Q ss_pred             HHHHHHhhhhhhh
Q 020422          298 AISLLGFATFFSV  310 (326)
Q Consensus       298 ~~g~~~~G~l~Dr  310 (326)
                      .+|.++.|.++|+
T Consensus       347 i~gRi~~G~laD~  359 (509)
T KOG2504|consen  347 IIGRIILGLLADK  359 (509)
T ss_pred             hhhhhhhhhhcCc
Confidence            9999999999999

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.61  E-value=1.9e-13  Score=124.79  Aligned_cols=239  Identities=14%  Similarity=0.122  Sum_probs=161.3

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHhh----hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANL----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~~----~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~  140 (326)
                      ...+|.+|.+++++++.+.+|+|+|+.+++|..++++....+.    ..+|..++++-++.|.|.+.+-++.+.|++...
T Consensus        54 qfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg  133 (422)
T COG0738          54 QFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLG  133 (422)
T ss_pred             HHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhC
Confidence            4667788999999999999999999999999999988877653    346778778889999999999999999999997


Q ss_pred             HhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCC-----C-C--------CCCCchhHHHHHHHHHHHHH
Q 020422          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD-----K-G--------GSTSGTTLLFIVFLGVITLG  206 (326)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~-----~-~--------~~~~wr~~~f~~~~~~~~l~  206 (326)
                                ++++-.+.+++.+..+.+|.++||+++..+....     + .        .-..|+. +|.......++-
T Consensus       134 ----------~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~-pYl~~~~~lvll  202 (422)
T COG0738         134 ----------KPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQF-PYLILAGLLVLL  202 (422)
T ss_pred             ----------CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh-HHHHHHHHHHHH
Confidence                      6667788899999999999999999986655420     0 0        0012333 354444444433


Q ss_pred             HHHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHH-HHHHHHhhHHHHHhhhcccccccc-cccCcc
Q 020422          207 TILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLI-IPLFAYSGLQQAFVWAEFTKEIVT-PALGVS  284 (326)
Q Consensus       207 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~  284 (326)
                      .++....|.|+.++.++ ++   .+..+.     ...+.+++|..++- ...++|.|.+.+... .+..+... .+.+.+
T Consensus       203 ~v~~~~~k~p~~~~~~~-~~---~~~~~~-----~~~~l~~~~~~~~gvl~~FlYVG~Eva~gs-fl~~y~~~~~g~~~~  272 (422)
T COG0738         203 AVLILLSKLPDLQVAAP-SL---GASGSA-----GLSSLFQNKHLRLGVLAIFLYVGAEVAIGS-FLVSYLEELLGLNEQ  272 (422)
T ss_pred             HHHHHhccCCcCCcccc-cc---cccccc-----hHHHHHhChHHHHHHHHHHHHHhHHHHHHH-HHHHHHHhcCCccHH
Confidence            33444444443322111 00   011110     12356677777763 456788999877632 33333322 344455


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhh---hhhHHhHHHHHhhc
Q 020422          285 GVGGAMAVYGAFDAISLLGFATFFSV---HSLLVGLPLVFHLS  324 (326)
Q Consensus       285 ~~g~~~~~~gi~~~~g~~~~G~l~Dr---R~~~~~~g~~~~~~  324 (326)
                      +....+..+..+.++|+.++-++..|   +|.+.....+..++
T Consensus       273 ~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill  315 (422)
T COG0738         273 QAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILL  315 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            77888888889999999888888888   56555544443333

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.59  E-value=2.1e-13  Score=129.67  Aligned_cols=239  Identities=11%  Similarity=0.017  Sum_probs=136.7

Q ss_pred             HHHHHHHHhhhhhhHHHHHHH----hchhh-HHHHHhHHHHHHHHHh-hhhh------hHHHHHHHHHhhhhhHHHHhhh
Q 020422           65 LGILYTSFTCFSLVASLVVRV----LGSKN-ALILGTTGYWLFVAAN-LFPS------WYTMVPASLYLGFAASIIWVGE  132 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~----~Grr~-~l~~g~~~~~~~~~~~-~~~~------~~~l~~~r~l~G~g~g~~~~~~  132 (326)
                      .++..+..++.+++.|+++||    +|||+ .++.+.+.+++..+.. ..|+      ...+++.+++.+++.+...+..
T Consensus        41 ~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (437)
T TIGR00792        41 FLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPY  120 (437)
T ss_pred             HHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccH
Confidence            344445668889999999998    67744 5666776666555443 3332      2344556778888887765555


Q ss_pred             hHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC--CCCCCchhHHHHHHHHHHHHHHHH-
Q 020422          133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--GGSTSGTTLLFIVFLGVITLGTIL-  209 (326)
Q Consensus       133 ~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~--~~~~~wr~~~f~~~~~~~~l~~il-  209 (326)
                      .++..+..         .+++||++..++...+..+|..+++.+...+.....  ....+||.. +.+..++.++..++ 
T Consensus       121 ~al~~~~~---------~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~-~~i~~~l~~~~~~~~  190 (437)
T TIGR00792       121 WSLVPAIT---------LDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMF-ALVLALIGVVSLIIC  190 (437)
T ss_pred             hhCccccc---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHH-HHHHHHHHHHHHHHH
Confidence            55666654         156889999998888888887777665444432111  113578763 44444444443333 


Q ss_pred             HHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccccC-cchHHH
Q 020422          210 MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG-VSGVGG  288 (326)
Q Consensus       210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~  288 (326)
                      .++.||++++.+++ +    +++.+.++.+   ++.+++|+++......+.......... .+.+.+.++..+ ....+.
T Consensus       191 ~~~~~e~~~~~~~~-~----~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  261 (437)
T TIGR00792       191 FFGTKERYSEIPKN-I----EKKLSLKQIF---KALFKNDQLLILCLAYLFYNLAFNIKN-GVQVYYFTYVLGDPELFSY  261 (437)
T ss_pred             HcCCEecCCCCCcc-c----ccCCCHHHHH---HHHhCCHHHHHHHHHHHHHHHHHHHHc-chhheeEeeecCChHHHHH
Confidence            34556643221111 0    1112333332   355678887765544333322222111 122333222233 334566


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHh
Q 020422          289 AMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFH  322 (326)
Q Consensus       289 ~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~  322 (326)
                      ......++..++.++.++++||  ||+.+..+.++.
T Consensus       262 ~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~  297 (437)
T TIGR00792       262 MGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLM  297 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            6667788899999999999999  666666665443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.58  E-value=1.2e-13  Score=134.78  Aligned_cols=145  Identities=12%  Similarity=0.067  Sum_probs=116.8

Q ss_pred             cCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhh
Q 020422           55 NTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEG  133 (326)
Q Consensus        55 ~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~  133 (326)
                      ..+........++++++..+++++.|+++||+|||++++++.++..++.+.. +++|++.+++.|++.|++.+.......
T Consensus       114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~  193 (521)
T KOG0255|consen  114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGF  193 (521)
T ss_pred             eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhH
Confidence            3344555566889999999999999999999999999999999998888765 899999999999999999999999999


Q ss_pred             HHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhc
Q 020422          134 TYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFL  213 (326)
Q Consensus       134 ~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l  213 (326)
                      .+++|+.          ++++|+.+..+ ......++.++++.++.+..       +||+. +++.....++.+++.++.
T Consensus       194 ~~~~E~~----------~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-------~Wr~~-~~~~~~~~~~~~~~~~l~  254 (521)
T KOG0255|consen  194 GLVAEIV----------SPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-------DWRWL-FWIISIPSGLFLLLWFLP  254 (521)
T ss_pred             hhheeec----------CcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-------hHHHH-HHHHHHHHHHHHHHHHcc
Confidence            9999986          88999999998 66777777777777766654       69984 444444455444444555


Q ss_pred             cCCcc
Q 020422          214 RKEED  218 (326)
Q Consensus       214 ~~~~~  218 (326)
                      +|+++
T Consensus       255 ~Es~r  259 (521)
T KOG0255|consen  255 PESPR  259 (521)
T ss_pred             CcChH
Confidence            57664

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.57  E-value=3.3e-14  Score=128.36  Aligned_cols=102  Identities=14%  Similarity=-0.030  Sum_probs=87.2

Q ss_pred             HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcC
Q 020422           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~  148 (326)
                      +...++++..|.++||+|||++++++.+..+++.... .+.|+..++++|++.|+.-|.+-. .-++++|+.        
T Consensus        79 ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v-~rAiisdV~--------  149 (451)
T KOG2615|consen   79 ILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSV-IRAIISDVV--------  149 (451)
T ss_pred             HHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHH-HHHHHHhhc--------
Confidence            3456677788999999999999999999888866654 677887777889999999997644 457888887        


Q ss_pred             CCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       149 ~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                        +||+|++.++.+...+++|.++||.+++.+.+
T Consensus       150 --sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  150 --SEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             --ChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence              88999999999999999999999999988876

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.56  E-value=1.4e-12  Score=125.91  Aligned_cols=138  Identities=9%  Similarity=-0.021  Sum_probs=103.6

Q ss_pred             HHHHHHHHhhhhhhHHHHHHH-hchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           65 LGILYTSFTCFSLVASLVVRV-LGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~-~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      .+.......++++++|+++|| +|||++++++.+++++..+.. +.++++.++.+|.+.|+|.|...++..+++++..++
T Consensus        54 ~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~  133 (475)
T TIGR00924        54 FGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYER  133 (475)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCC
Confidence            444445667778899999999 899999999999888766654 566777788899999999999999888899888631


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~  215 (326)
                      .       ++++|++++++++.+.++|..+|+++++.+...     .+|+.. |.+..+..+++.+.+++.++
T Consensus       134 ~-------~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~-----~g~~~~-f~~~~~~~~~~~l~~~~~~~  193 (475)
T TIGR00924       134 G-------DMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN-----YGYHVG-FNLAAVGMVIGLLTFFAGRH  193 (475)
T ss_pred             C-------CcccccceehhHHHHHHHHHHHHHHHHHHHHHh-----cChHHH-HHHHHHHHHHHHHHHHHccc
Confidence            0       113588999999999999999999998887643     468864 44444434444444444443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.55  E-value=1.7e-12  Score=125.96  Aligned_cols=231  Identities=13%  Similarity=0.061  Sum_probs=145.9

Q ss_pred             HHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH--hh----hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHh
Q 020422           67 ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--NL----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (326)
Q Consensus        67 ~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~--~~----~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~  140 (326)
                      ...+-..+.++++|.++||+.||++++.+-++.++..+.  .+    ..+.+.+++.-++.|++.+...|+..+++.+..
T Consensus        53 a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV  132 (524)
T PF05977_consen   53 ASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELV  132 (524)
T ss_pred             HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334455677889999999999999999888765443222  11    236777888889999999999999999999987


Q ss_pred             HhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcccc
Q 020422          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKG  220 (326)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~  220 (326)
                                |+++...+.++.....+++.++||.+++.+....     |-.. .|.+-++..++.++.....+++.+++
T Consensus       133 ----------~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~-----G~~~-~f~inalsfl~~i~~l~~~~~~~~~~  196 (524)
T PF05977_consen  133 ----------PKEDLPAANALNSISFNIARIIGPALGGILVAFF-----GAAA-AFLINALSFLISILALLRWKPPPPPS  196 (524)
T ss_pred             ----------cHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHHHcccccccc
Confidence                      7889999999999999999999999998876532     2222 23332222222222223333322211


Q ss_pred             ccccccccchhhchHHHHHHHHHHhh-hcchhHHHHHHHHHhhHHHHHhhhccccccccc--ccCcchHHHHHHHHHHHH
Q 020422          221 EKETADASVNFYSYLVSLSKSITTLL-ADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFD  297 (326)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~gi~~  297 (326)
                      + .       .+++..+.+++-.+.. ++|.++......+..++....++.. .|.+..+  +.+....|+.+..+|+|+
T Consensus       197 ~-~-------~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aL-lPl~a~~~l~~~a~~yGll~a~~gvGa  267 (524)
T PF05977_consen  197 S-L-------PRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWAL-LPLFARDVLGGGASGYGLLLAAFGVGA  267 (524)
T ss_pred             c-c-------chhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHh-hhHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            1 1       1112233344433433 4555554433333333332222322 3444333  345567899999999999


Q ss_pred             HHHHHHhhhhhhh--hhhHHhHHHHHh
Q 020422          298 AISLLGFATFFSV--HSLLVGLPLVFH  322 (326)
Q Consensus       298 ~~g~~~~G~l~Dr--R~~~~~~g~~~~  322 (326)
                      .+|+++.+++.+|  +++++..+.+..
T Consensus       268 i~Gal~~~~l~~~~~~~~lv~~~~~~~  294 (524)
T PF05977_consen  268 ILGALLLPRLRRRLSSRRLVLLASLLF  294 (524)
T ss_pred             HHHHHHHHHhhcccCcchhhHHHHHHH
Confidence            9999999999998  445555554443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.55  E-value=1.9e-12  Score=126.04  Aligned_cols=174  Identities=9%  Similarity=0.000  Sum_probs=109.4

Q ss_pred             cccccCccccchhHHHHHHHHHHHHH---HHHhH----HhhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchh
Q 020422           17 SLQVLTPKNYTRDVHILSCAFLLIFL---AYGAA----QNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSK   89 (326)
Q Consensus        17 ~~~~~~~~~~~~~~~~l~l~~~~~~~---~~~~~----~~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr   89 (326)
                      ++.|..+.+.++-+..+....+.+..   .....    ..+..++..+.+....+.+ ..+..++.+++.|.++|.||||
T Consensus        30 ~~~p~g~~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~-~~l~~av~~~~~G~LSDlfGRr  108 (599)
T PF06609_consen   30 DELPDGYYRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTA-WTLASAVSFPFVGRLSDLFGRR  108 (599)
T ss_pred             hhCCCCceeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHH-HHHHHHHHHHhhHHHHHHhcch
Confidence            44566666665555444333332222   22211    2344455444444554433 3346678889999999999999


Q ss_pred             hHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHH
Q 020422           90 NALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS  168 (326)
Q Consensus        90 ~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~  168 (326)
                      +.++.+.++..+..+.. .++|..+++++-++.|+|.|..... ...++|..          |.+.|+...++.....-.
T Consensus       109 ~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~~-~~~isEl~----------p~k~R~~~~~~~~~~~i~  177 (599)
T PF06609_consen  109 YFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQELA-ALAISELV----------PNKWRGLGLAIASIPFII  177 (599)
T ss_pred             HHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHHH-HHHHHHhc----------ccchhhhHhHHHHHHHHh
Confidence            99999999888877754 7899999999999999998876544 33467775          777887766655444333


Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHH
Q 020422          169 HQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI  208 (326)
Q Consensus       169 g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~i  208 (326)
                      ....|+.++..+..     ..+|||. |+..++...++.+
T Consensus       178 ~~~~~~~ia~~~~~-----~~~WRw~-~~~~~i~~~i~~v  211 (599)
T PF06609_consen  178 TTWISPLIAQLFAA-----HSGWRWI-FYIFIIWSGIALV  211 (599)
T ss_pred             hhcccHHHHHHhcc-----CCCcchH-HHHHHHHHHHHHH
Confidence            33456666544432     2479985 4445555444443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.54  E-value=8.4e-18  Score=160.76  Aligned_cols=142  Identities=17%  Similarity=0.156  Sum_probs=109.9

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhh---hhHHHHHHHHHhhhhhHHHHhhhhHHHHHH
Q 020422           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFP---SWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (326)
Q Consensus        64 ~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~---~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~  139 (326)
                      ..+..+++..+++++.|.++||+|||+++..+.++..+..+.. +++   |++.+.++|++.|++.|..++....|+.|.
T Consensus        51 ~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~  130 (451)
T PF00083_consen   51 LTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEI  130 (451)
T ss_pred             HHHHHHhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3566777788899999999999999999999999888777764 677   899999999999999999999999999999


Q ss_pred             hHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 020422          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~  218 (326)
                      +          |+++||+..++......+|..++.+++.......  +..+||.. +....+.+++..+..+++||+++
T Consensus       131 ~----------~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~--~~~~Wr~~-~~~~~~~~l~~~~~~~~~pESP~  196 (451)
T PF00083_consen  131 A----------PPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS--DNWGWRIL-LIFGAIPSLLVLLLRFFLPESPR  196 (451)
T ss_pred             c----------cccccccccccccccccccccccccccccccccc--cccccccc-ccccccccccccccccccccccc
Confidence            7          8899999999988888888887777665442211  13568873 22233333333444577898764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.54  E-value=9.2e-12  Score=116.97  Aligned_cols=154  Identities=12%  Similarity=0.008  Sum_probs=87.5

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccch
Q 020422          151 EGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVN  230 (326)
Q Consensus       151 ~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~  230 (326)
                      ++++++...+....+..+|..+|+.....+.+.     .+||. .|++.+++.++..+..++++|++++++++       
T Consensus       127 ~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~-----~gw~~-~f~~~a~l~~~~~~~~~~~~~~~~~~~~~-------  193 (390)
T TIGR02718       127 NGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK-----FGQRP-AFLLVACVPLASLVCVLWLKDRAVASPEA-------  193 (390)
T ss_pred             CHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCHHH-HHHHHHHHHHHHHHHHHHcCCCCcCcccc-------
Confidence            555566666767667677777777666565543     47987 35555555555444445555433211110       


Q ss_pred             hhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccccCcchHHHHHHHHHH-HHHHHHHHhhhhhh
Q 020422          231 FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGA-FDAISLLGFATFFS  309 (326)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gi-~~~~g~~~~G~l~D  309 (326)
                      ++ .   ..++..+.+|+|.++......+..........+..++++.+.+.+.+++|......++ ...++..+.|++.|
T Consensus       194 ~~-~---~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~  269 (390)
T TIGR02718       194 PL-A---RRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVR  269 (390)
T ss_pred             ch-h---hHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            00 0   1123446778888766554433333322222333334443445667788888887775 55567899999999


Q ss_pred             h--hhhHHhHHHHH
Q 020422          310 V--HSLLVGLPLVF  321 (326)
Q Consensus       310 r--R~~~~~~g~~~  321 (326)
                      |  ||+.+..+.++
T Consensus       270 r~g~~~~l~~~~~~  283 (390)
T TIGR02718       270 RAGLWRTFILGVGL  283 (390)
T ss_pred             HhhHHHHHHHHHHH
Confidence            9  55555555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.53  E-value=4.3e-12  Score=123.28  Aligned_cols=113  Identities=10%  Similarity=0.040  Sum_probs=86.3

Q ss_pred             hhhhhHHHHHHH-hchhhHHHHHhHHHHHHHHHh-hh-hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCC
Q 020422           74 CFSLVASLVVRV-LGSKNALILGTTGYWLFVAAN-LF-PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH  150 (326)
Q Consensus        74 ~~~l~~g~l~d~-~Grr~~l~~g~~~~~~~~~~~-~~-~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~  150 (326)
                      ...+++|+++|| +|||+++..+.+++++..... ++ +++..++++|++.|+|.|...+...+++++.+++        
T Consensus        72 ~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~--------  143 (500)
T PRK09584         72 GLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEK--------  143 (500)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCC--------
Confidence            334689999999 599999999998887665543 44 3456667789999999999888888888888632        


Q ss_pred             cccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHH
Q 020422          151 EGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFL  200 (326)
Q Consensus       151 ~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~  200 (326)
                      ++++|++++++++.+.++|..+||.+++.+.+.     .|||+. |.+..
T Consensus       144 ~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~-----~g~~~~-F~i~~  187 (500)
T PRK09584        144 DDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK-----YGWSVA-FALSV  187 (500)
T ss_pred             CchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh-----hCHHHH-HHHHH
Confidence            223456788999999999999999999888653     478874 44433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.53  E-value=6.9e-12  Score=113.10  Aligned_cols=247  Identities=12%  Similarity=0.088  Sum_probs=165.9

Q ss_pred             hHHhhhhhhcCCCCchhHH----HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHhhhhhhHHHHHHHHHh
Q 020422           46 AAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYL  121 (326)
Q Consensus        46 ~~~~l~~~l~~~~~~g~~~----~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~  121 (326)
                      ....+.+++..|.++++..    .++-.++++..+++++++.+|+|.++.+..++++.++.++.=...+.+.++..-.+.
T Consensus        30 svgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt~l~  109 (395)
T COG2807          30 SVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLLA  109 (395)
T ss_pred             hhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            3445556666666655543    355567889999999999999999999999998877776653333666777788899


Q ss_pred             hhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHH
Q 020422          122 GFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLG  201 (326)
Q Consensus       122 G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~  201 (326)
                      |.|.+..-.--.+.+-+.           .|++-+..+|+|......|..+++.+...+.++.    .+||..+. .-+.
T Consensus       110 G~gIav~nVLLPslIK~~-----------Fpk~~~~mtglYs~sl~~~aaLaa~lavpla~~~----~gW~~aL~-~WAl  173 (395)
T COG2807         110 GAGIAVINVLLPSLIKRD-----------FPKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS----GGWRGALG-FWAL  173 (395)
T ss_pred             HhhHHHHHHhhhHHHHhh-----------cccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh----ccHHHHHH-HHHH
Confidence            999987655555555554           5778999999999999999999988887776553    47987422 2344


Q ss_pred             HHHHHHHHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccccccccc
Q 020422          202 VITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPAL  281 (326)
Q Consensus       202 ~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~  281 (326)
                      .++++.+  .++|...+++..+.+    .+.       ++-.+.+|+|.-|.+...+=.+.+......+++++++.++++
T Consensus       174 ~allAl~--~WlPq~~r~~~~~~~----~~~-------~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~  240 (395)
T COG2807         174 LALLALL--IWLPQALREQAASIA----TKL-------VSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGL  240 (395)
T ss_pred             HHHHHHH--HHhhhcccccccccc----ccc-------ccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCC
Confidence            4444433  344553222111100    000       111257788888876554323322222234567777778888


Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhhhhhhh---hhhHHhHHHHH
Q 020422          282 GVSGVGGAMAVYGAFDAISLLGFATFFSV---HSLLVGLPLVF  321 (326)
Q Consensus       282 ~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr---R~~~~~~g~~~  321 (326)
                      +.++.|.......+.....+++.-.+.+|   ||++.+...+.
T Consensus       241 sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~  283 (395)
T COG2807         241 SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLL  283 (395)
T ss_pred             CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            88899999999999999999999999987   55555444433

>PTZ00207 hypothetical protein; Provisional

Probab=99.49  E-value=6.7e-12  Score=122.71  Aligned_cols=129  Identities=13%  Similarity=0.129  Sum_probs=94.6

Q ss_pred             HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hh------hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF------PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~------~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      ..+++++++.|++.||+|||+++.++.+++++..+.. ++      ++++.+.+.|++.|+|.+..++++...+.++   
T Consensus        72 ~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~---  148 (591)
T PTZ00207         72 IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSV---  148 (591)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            3456677889999999999999999999888776653 43      5888999999999999999988887777777   


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHH-HHHHHHHhcCCCCCCCCchhHHHHHHHHHHHH-HHHHHHhccCCc
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVG-NLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTILMCFLRKEE  217 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G-~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l-~~il~~~l~~~~  217 (326)
                              .|++||++.|+...+..+|.++. ++....+ ..      +|+.. |+..+++.++ +++...++++++
T Consensus       149 --------Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~-~~------~~~~~-fl~l~vl~~vv~ll~~~~vr~p~  209 (591)
T PTZ00207        149 --------FPSNRGAVVAIMKTFTGLGSAILGSIQLAFF-SD------NTSAY-FFFLMSFALVVGILAIVFMRLPP  209 (591)
T ss_pred             --------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH------hHHHH-HHHHHHHHHHHHHHHHhheeCCc
Confidence                    35789999999999999998764 4444433 21      46553 3334444443 344445666654

>TIGR00788 fbt folate/biopterin transporter

Probab=99.44  E-value=7.4e-11  Score=113.69  Aligned_cols=243  Identities=12%  Similarity=0.058  Sum_probs=144.5

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhc-----hhhHHHHHhHHHH-HHHHHh-hhhhhHHHH-HHHHHhhhhhHHHHhhhhHHHH
Q 020422           66 GILYTSFTCFSLVASLVVRVLG-----SKNALILGTTGYW-LFVAAN-LFPSWYTMV-PASLYLGFAASIIWVGEGTYLT  137 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~G-----rr~~l~~g~~~~~-~~~~~~-~~~~~~~l~-~~r~l~G~g~g~~~~~~~~~l~  137 (326)
                      +...+.+.+ .++.|+++||++     ||+.++++.++.+ +..... ..++..... ....+.+++.+..-++..++..
T Consensus        68 sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~  146 (468)
T TIGR00788        68 GLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYS  146 (468)
T ss_pred             HHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence            444555555 445999999998     8888888776553 221111 234433333 3678999999998888888888


Q ss_pred             HHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCc
Q 020422          138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  217 (326)
Q Consensus       138 ~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~  217 (326)
                      |..++        +++.++...++.|.....|..+|+.+++.+.+.     .+|+.. |.+.+++.++..+..++++|++
T Consensus       147 e~~~~--------~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~-----~~~~~~-f~~~a~l~ll~~~~~~~~~E~~  212 (468)
T TIGR00788       147 ERIRE--------SPSAGPSLVSWMWGASATGGLISSLLGGPLLDK-----TLTRIL-FLITAALLLLQLFVSNLSKERR  212 (468)
T ss_pred             hhhhc--------CCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh-----cCcchH-HHHHHHHHHHHHHHHHhccccc
Confidence            87631        334445566677777778999999998877653     368874 5455555555444556778854


Q ss_pred             c-cccccccc-------ccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHH-HHHhhhcccccccccccCcchHHH
Q 020422          218 D-KGEKETAD-------ASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQ-QAFVWAEFTKEIVTPALGVSGVGG  288 (326)
Q Consensus       218 ~-~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~g~  288 (326)
                      . ..++..++       .........++++++.++.+++|.++......+..... .......|......-+.+++..|.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~  292 (468)
T TIGR00788       213 AFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGM  292 (468)
T ss_pred             ccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhh
Confidence            1 11110000       00000112344456667778888877643332221111 111111111000123566778999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHhh
Q 020422          289 AMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFHL  323 (326)
Q Consensus       289 ~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~~  323 (326)
                      .....+++++++..+.+++.+|  .|+++..+.++..
T Consensus       293 ~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~  329 (468)
T TIGR00788       293 SKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYT  329 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence            9999999999999999999888  5666666665544

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.39  E-value=1.1e-09  Score=99.42  Aligned_cols=232  Identities=12%  Similarity=0.083  Sum_probs=133.1

Q ss_pred             CCchhHHHHHHHHH----HhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHhhhhhhHHHHHHHHHhhhhhHHHHhhhh
Q 020422           58 GNLGTISLGILYTS----FTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEG  133 (326)
Q Consensus        58 ~~~g~~~~~~~~~~----~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~  133 (326)
                      .+...-.++.+|.+    .++...+.|.++||+|||+.-+.-.++|++..+.-..++++.++++|++.|++.++++++--
T Consensus        64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGiaTSLLfS~FE  143 (354)
T PF05631_consen   64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGIATSLLFSAFE  143 (354)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            44443344445543    24455678899999999999999888888777665678999999999999999999999854


Q ss_pred             HH-HHHHhHhhhhhcCCCcccchhhHHHHHH-HHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 020422          134 TY-LTAAALSHASNHKLHEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (326)
Q Consensus       134 ~~-l~~~~~~~~~~~~~~~~~~rg~~~gi~~-~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~  211 (326)
                      ++ +.|+ .+    +|+ |++..+..++... ..+.+-.+..++++-.+....+   .+ +..+|..-.++..++.++..
T Consensus       144 sW~V~Eh-~~----~g~-~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~---~g-~vaPF~~a~~~l~~~~~~I~  213 (354)
T PF05631_consen  144 SWMVHEH-NK----RGF-PQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG---FG-PVAPFDAAIVLLAVAAVLIL  213 (354)
T ss_pred             HHHHHHH-HH----cCC-ChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC---CC-CcchHHHHHHHHHHHHHHHH
Confidence            44 4444 33    232 4444555444332 2233333444555544443221   12 23356555555555444333


Q ss_pred             hc-cCCccccccccccccchhhchHHHHHHHHH-HhhhcchhHHHHHHHH-HhhHHHHHhhhcccccccccccCcchHHH
Q 020422          212 FL-RKEEDKGEKETADASVNFYSYLVSLSKSIT-TLLADVRMLLIIPLFA-YSGLQQAFVWAEFTKEIVTPALGVSGVGG  288 (326)
Q Consensus       212 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~g~  288 (326)
                      .. +|...+.. +        +.+..+.+++-. .+.+||+++.+...-. +=+..+.|.. .++|.+..++- .---|+
T Consensus       214 ~~W~ENyg~~~-~--------~~~~~~~~~~a~~~i~~d~ril~LG~~qslFE~smy~FVf-lWtPaL~~~~~-~~P~Gl  282 (354)
T PF05631_consen  214 KTWPENYGDTS-S--------SSSLSGSFREAWRAILSDPRILLLGLIQSLFEGSMYLFVF-LWTPALDPDDE-ELPLGL  282 (354)
T ss_pred             hcccccCCCcc-c--------ccchHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHhee-eeeceecCCCC-CCCchH
Confidence            22 23221111 1        112222333322 3557899887654422 2233333322 45666642211 113689


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhh
Q 020422          289 AMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       289 ~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      ++..+-++.++|+.+..++..+
T Consensus       283 IFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  283 IFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999876665

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.38  E-value=2.8e-10  Score=105.45  Aligned_cols=223  Identities=13%  Similarity=0.025  Sum_probs=127.8

Q ss_pred             HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH-h--hh----hhhH--HHHHHHHHhhhhhHHHHhhhhHHHHHHh
Q 020422           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-N--LF----PSWY--TMVPASLYLGFAASIIWVGEGTYLTAAA  140 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~-~--~~----~~~~--~l~~~r~l~G~g~g~~~~~~~~~l~~~~  140 (326)
                      .++....+.+-|+.||+|-|..++++...-++.... .  ..    +.++  ..+.+..+.+.++-.+.......-+.| 
T Consensus        90 ~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~W-  168 (480)
T KOG2563|consen   90 VVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVW-  168 (480)
T ss_pred             HHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhh-
Confidence            455666777889999999999999999877666543 2  22    2333  455566666666654443333444444 


Q ss_pred             HhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCC-CCCCCCchhH-HHHHHHHHHHHHHHHHHh-ccCCc
Q 020422          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD-KGGSTSGTTL-LFIVFLGVITLGTILMCF-LRKEE  217 (326)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~-~~~~~~wr~~-~f~~~~~~~~l~~il~~~-l~~~~  217 (326)
                               ++++||..+..+=..++.+|.++|.+++..+..+. +..+.+|-.- +|....+++.+..++..+ .++++
T Consensus       169 ---------F~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P  239 (480)
T KOG2563|consen  169 ---------FPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKP  239 (480)
T ss_pred             ---------CCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence                     49999999999888889999999999988887665 2223445321 122222222222222222 23322


Q ss_pred             cccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhc---ccccccccccCcchHHHHHHHHH
Q 020422          218 DKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAE---FTKEIVTPALGVSGVGGAMAVYG  294 (326)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~g  294 (326)
                      +.+....++ . .+..++   .+++++.++++++..+...+   |...+.+++.   ..+.+...+.+....|+.....-
T Consensus       240 ~tPps~s~~-~-~~~~~f---~~si~~~~~n~~F~il~~~y---gi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~i  311 (480)
T KOG2563|consen  240 PTPPSASQA-A-LQDASF---PKSIKSCFKNRQFIILAICY---GIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMI  311 (480)
T ss_pred             CCCCchhHh-h-hhcCcH---HHHHHHHHcCccHHHHHHHH---hhhHHHHHHHHHHhhhccccccCCccccchhHHHHH
Confidence            211111000 0 011122   34566889999988765432   2211111212   11122111222235677777777


Q ss_pred             HHHHHHHHHhhhhhhh
Q 020422          295 AFDAISLLGFATFFSV  310 (326)
Q Consensus       295 i~~~~g~~~~G~l~Dr  310 (326)
                      +++++++++.|.+.||
T Consensus       312 v~Gmlga~~~gii~Dk  327 (480)
T KOG2563|consen  312 VAGMLGALASGIIADK  327 (480)
T ss_pred             HHHHHHHHHHHhhhhh
Confidence            8889999999999999

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.37  E-value=1.7e-12  Score=119.92  Aligned_cols=108  Identities=16%  Similarity=0.093  Sum_probs=87.3

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hh---hh----hHHHHHHHHHhhhhhHHHHhhhhHH
Q 020422           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF---PS----WYTMVPASLYLGFAASIIWVGEGTY  135 (326)
Q Consensus        64 ~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~---~~----~~~l~~~r~l~G~g~g~~~~~~~~~  135 (326)
                      ..++.+++-.++|++.|++.||+|||+++...+++..+.+++. +.   ++    ...+...|.++|+|.|+-+|.+.+.
T Consensus        89 Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI  168 (538)
T KOG0252|consen   89 VNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATI  168 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHH
Confidence            3566677778999999999999999999999998888877643 31   12    3466788999999999999999999


Q ss_pred             HHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422          136 LTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (326)
Q Consensus       136 l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~  181 (326)
                      .+|.+          .+++||...+...+....|...|.+++..+.
T Consensus       169 ~SE~a----------n~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~  204 (538)
T KOG0252|consen  169 MSESA----------NKKTRGAFIAAVFAMQGFGILAGGIVALIVS  204 (538)
T ss_pred             hhhhh----------hhccccceeEEEEEecchhHhhccHHHHHHH
Confidence            99987          6789999888887777777777776665543

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.36  E-value=2.1e-10  Score=109.88  Aligned_cols=144  Identities=10%  Similarity=-0.004  Sum_probs=82.0

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHhhhhhhcCCCCchhH----HHHHHHHHHhhhhhhHHHHHH----HhchhhHHHHHhHH
Q 020422           27 TRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTI----SLGILYTSFTCFSLVASLVVR----VLGSKNALILGTTG   98 (326)
Q Consensus        27 ~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~----~~~~~~~~~~~~~l~~g~l~d----~~Grr~~l~~g~~~   98 (326)
                      .+.++.++..++.+..++.......+++..+.+....    ...+.-+...+.+++.|.++|    |+|||+.++++..+
T Consensus         3 ~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~   82 (477)
T TIGR01301         3 LRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAA   82 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHH
Confidence            3455556666655555555443333333222222222    223333455677889999999    59999999876443


Q ss_pred             HHHHH-HHh-hhhhhHHHH------------HHHHHh-----hhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccch--hh
Q 020422           99 YWLFV-AAN-LFPSWYTMV------------PASLYL-----GFAASIIWVGEGTYLTAAALSHASNHKLHEGTVI--GS  157 (326)
Q Consensus        99 ~~~~~-~~~-~~~~~~~l~------------~~r~l~-----G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~r--g~  157 (326)
                      ..... ... ..++...++            ..+.+.     .++.....+...++++|..          |+++|  ++
T Consensus        83 ~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~----------p~~~~~~~~  152 (477)
T TIGR01301        83 LVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLT----------GGDARRTRI  152 (477)
T ss_pred             HHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----------CchhHHHHH
Confidence            33222 222 333322111            122233     3355555555556666655          66654  68


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHH
Q 020422          158 FNGEFWGMFASHQFVGNLITLAV  180 (326)
Q Consensus       158 ~~gi~~~~~~~g~~~G~li~~~l  180 (326)
                      +.+++....++|..+|+.+++..
T Consensus       153 a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301       153 ANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09669 putative symporter YagG; Provisional

Probab=99.36  E-value=1e-10  Score=111.99  Aligned_cols=232  Identities=9%  Similarity=-0.093  Sum_probs=124.4

Q ss_pred             HHHHHHhhhhhhHHHHHHH----hchh-hHHHHHhHHHHHHHHH-hhhhh------hHHHHHHHHHhhhhhHHHHhhhhH
Q 020422           67 ILYTSFTCFSLVASLVVRV----LGSK-NALILGTTGYWLFVAA-NLFPS------WYTMVPASLYLGFAASIIWVGEGT  134 (326)
Q Consensus        67 ~~~~~~~~~~l~~g~l~d~----~Grr-~~l~~g~~~~~~~~~~-~~~~~------~~~l~~~r~l~G~g~g~~~~~~~~  134 (326)
                      +.-+..++..++.|.++||    +||| +.++.+.+..++.... +..|+      ...+++...+.+++.+.....-.+
T Consensus        53 i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~a  132 (444)
T PRK09669         53 VVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCA  132 (444)
T ss_pred             HHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHH
Confidence            3334557888999999999    7774 4555676666655543 33332      223334455556665555555566


Q ss_pred             HHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC--CCCCCchhHHHHHHHHHHHHHHHHH-H
Q 020422          135 YLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--GGSTSGTTLLFIVFLGVITLGTILM-C  211 (326)
Q Consensus       135 ~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~--~~~~~wr~~~f~~~~~~~~l~~il~-~  211 (326)
                      ..+|+.+         +++||++..++...+..+|..+++.+...+.....  ....+|+.. +.+++++..+..++. +
T Consensus       133 l~~~~t~---------~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~-~~i~~ii~~v~~~~~~~  202 (444)
T PRK09669        133 MPGAITN---------DPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYA-MMVMGLLGVVLFFCCFF  202 (444)
T ss_pred             hHHHhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH-HHHHHHHHHHHHHHHhC
Confidence            7777652         56789998898888888888888766544332221  112456542 333344333333222 2


Q ss_pred             hccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccccCcc-hHHHHH
Q 020422          212 FLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS-GVGGAM  290 (326)
Q Consensus       212 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~g~~~  290 (326)
                      ..+|+.++++ +       ++.+.++   ++++.+||+.++.+....+.......... .+..++.++.++.. ..+...
T Consensus       203 ~~~e~~~~~~-~-------~~~~~~~---~~~~~~~n~~~~~l~~~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~~~  270 (444)
T PRK09669        203 MTKERYTPEV-D-------NSSSVWK---DLKLLLGNSQWRIMFIFNVVLLTAVVTRG-GATLYYVNYVLLRPDLATLFL  270 (444)
T ss_pred             CeEEecCCCC-c-------CCCCHHH---HHHHHhCCchHHHHHHHHHHHHHHHHHHh-hhhheeeeeecCCHHHHHHHH
Confidence            3344322111 0       1112222   33456788887776544333322222211 12222222223322 334444


Q ss_pred             HHHHHHHHHHHHHhhhhhhh--hhhHHhHHHH
Q 020422          291 AVYGAFDAISLLGFATFFSV--HSLLVGLPLV  320 (326)
Q Consensus       291 ~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~  320 (326)
                      ....+...++..+.++++||  ||+.+..+.+
T Consensus       271 ~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~  302 (444)
T PRK09669        271 VTGMIAGLFGALLSERLLGKFDRVRAFKWTIV  302 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence            55567777888899999999  5555544443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.34  E-value=9.6e-11  Score=110.25  Aligned_cols=137  Identities=15%  Similarity=0.103  Sum_probs=100.2

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhh
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~  144 (326)
                      +...++..++.++.+++.||+|||+.+..+.++.++..... ..++.+.++...++.|++.+..++.......+..    
T Consensus       256 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~----  331 (399)
T PRK05122        256 TLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRV----  331 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC----
Confidence            34445556778899999999999999988877666554443 4567777777889999999988877666665554    


Q ss_pred             hhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 020422          145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (326)
Q Consensus       145 ~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~  218 (326)
                            |+++||++.|++.....+|..+++.+.+.+...     .+|+. .|.+..++.+++.++..+++++++
T Consensus       332 ------~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-----~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~  393 (399)
T PRK05122        332 ------PPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-----FGYPS-IFLAAALAALLGLALTWLLYRRAP  393 (399)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCHHH-HHHHHHHHHHHHHHHHHHhccccc
Confidence                  789999999999999999999988887776543     35665 355555556666655555655433

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.33  E-value=3.3e-10  Score=109.37  Aligned_cols=234  Identities=10%  Similarity=0.052  Sum_probs=122.1

Q ss_pred             HHHhhhhhhHHHHHH----Hhch-hhHHHHHhHHHHHHHHHh-hhhh------hHHHHHHHHHhhhhhHHHHhhhhHHHH
Q 020422           70 TSFTCFSLVASLVVR----VLGS-KNALILGTTGYWLFVAAN-LFPS------WYTMVPASLYLGFAASIIWVGEGTYLT  137 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d----~~Gr-r~~l~~g~~~~~~~~~~~-~~~~------~~~l~~~r~l~G~g~g~~~~~~~~~l~  137 (326)
                      +.-++..++.|.++|    |+|| |+.++++.+..++..... ..|+      +..+++..++.+++.....+.-.+...
T Consensus        53 i~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~  132 (473)
T PRK10429         53 IWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVP  132 (473)
T ss_pred             HHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhH
Confidence            344777889999999    6698 555566776666654433 3231      122334455667777776666677777


Q ss_pred             HHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC--CCCCCchhHHHHHHHHHHHHHHHHH-Hhcc
Q 020422          138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--GGSTSGTTLLFIVFLGVITLGTILM-CFLR  214 (326)
Q Consensus       138 ~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~--~~~~~wr~~~f~~~~~~~~l~~il~-~~l~  214 (326)
                      |..+         +++||.+..++-....++|..+++.+...+.....  +...+|+. ...+..++..+..++. +..|
T Consensus       133 ~lt~---------~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~-~~~i~~~~~~~~~~~~~~~~~  202 (473)
T PRK10429        133 TLTL---------DKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQM-FTLVLIAFFIVSTIITLRNVH  202 (473)
T ss_pred             HhCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH-HHHHHHHHHHHHHHHHHcCce
Confidence            7762         57899998887666667776665544333222111  11123443 1222233323322222 2355


Q ss_pred             CCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccccC-cchHHHHHHHH
Q 020422          215 KEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG-VSGVGGAMAVY  293 (326)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~  293 (326)
                      |+...++++.   +++++.+.++.++   ..++|+.++.++...+......... ..+.+++..+..+ .+..+......
T Consensus       203 e~~~~~~~~~---~~~~~~~~~~~~~---~~~~n~~~~~ll~~~~~~~~~~~~~-~~~~~y~~~y~~~~~~~~~~~~~~~  275 (473)
T PRK10429        203 EVYSSDNQVS---AEGSHLTLKDIVA---LIYKNDQLSCLLGMALAYNIASNII-NGFAIYYFTYVIGDADLFPYYLSYA  275 (473)
T ss_pred             ecCCcccccc---ccccCCCHHHHHH---HHhcCHHHHHHHHHHHHHHHHHHHH-hhheeeEEEEECCCHHHHHHHHHHH
Confidence            5422111010   0011223444332   3457777766544433332222221 1222333332222 23455666666


Q ss_pred             HHHHHHHHHHhhhhhhh--hhhHHhHHHH
Q 020422          294 GAFDAISLLGFATFFSV--HSLLVGLPLV  320 (326)
Q Consensus       294 gi~~~~g~~~~G~l~Dr--R~~~~~~g~~  320 (326)
                      +++..++.++.++++||  ||+.++.+.+
T Consensus       276 ~i~~ii~~~~~~~l~~r~gkk~~~~~~~~  304 (473)
T PRK10429        276 GAANLVTLILFPRLVKSLSRRILWAGASI  304 (473)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            78888999999999999  5555554443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.33  E-value=7.3e-11  Score=118.68  Aligned_cols=132  Identities=11%  Similarity=0.017  Sum_probs=104.4

Q ss_pred             HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcC
Q 020422           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~  148 (326)
                      ++..++++++++++||+|||++++.+.++.++..+.. +.++...+++.+++.|+..++.|+....+++|++        
T Consensus       606 l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~--------  677 (742)
T TIGR01299       606 LAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELY--------  677 (742)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------
Confidence            4446677899999999999999999988887766553 5666666777888999999999999889999987        


Q ss_pred             CCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 020422          149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (326)
Q Consensus       149 ~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~  218 (326)
                        |.++||+++|+......+|.++||.+++.+...       +...+|.+++++.+++.++.+++||+..
T Consensus       678 --Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-------~~~~pf~i~a~~lll~~ll~~~LPET~~  738 (742)
T TIGR01299       678 --PSDKRATAFGFLNALCKAAAVLGILIFGSFVGI-------TKAAPILFASAALACGGLLALKLPDTRG  738 (742)
T ss_pred             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence              889999999999999999999999998766532       1233455566666666666777887543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.33  E-value=7.2e-11  Score=93.25  Aligned_cols=124  Identities=17%  Similarity=0.151  Sum_probs=96.9

Q ss_pred             HHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCC
Q 020422           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL  149 (326)
Q Consensus        71 ~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~  149 (326)
                      +..+++++.|++.||+|||+.+..+.....+..... ..++.+.+...+++.|++.+..++....++.|..         
T Consensus        10 ~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---------   80 (141)
T TIGR00880        10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIY---------   80 (141)
T ss_pred             HHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC---------
Confidence            445667889999999999999998887766655543 5677888888999999999999888888888886         


Q ss_pred             CcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 020422          150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM  210 (326)
Q Consensus       150 ~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~  210 (326)
                       |+++|++..++......+|..+|+.+.+.+.+.     .+|+.. |.+......++.+..
T Consensus        81 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~  134 (141)
T TIGR00880        81 -PPEERGVALGLMSAGIALGPLLGPPLGGVLAQF-----LGWRAP-FLFLAILALAAFILL  134 (141)
T ss_pred             -ChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc-----cchHHH-HHHHHHHHHHHHHHH
Confidence             788999999999999999999999998877543     367663 444455545444433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.27  E-value=8.5e-10  Score=103.86  Aligned_cols=129  Identities=12%  Similarity=-0.004  Sum_probs=92.3

Q ss_pred             HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcC
Q 020422           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~  148 (326)
                      ....++.++.|+++||+|||+.+..+.+...+..... ..++++.++..+++.+++.|...+....+..|..        
T Consensus       263 ~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~--------  334 (393)
T PRK15011        263 GLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLM--------  334 (393)
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------
Confidence            4445567899999999999998887665444333222 3556666667888888888877666666666663        


Q ss_pred             CCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 020422          149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (326)
Q Consensus       149 ~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~  215 (326)
                        | ++||++.+++....++|..+|+.+++.+...     .+|+. .|.+..++.+++.+..+++||
T Consensus       335 --p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~-----~g~~~-~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        335 --P-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEI-----WNYHA-VFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             --C-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhHH-HHHHHHHHHHHHHHHHHhhcC
Confidence              4 5799999999999999999999999887653     35765 344455555666666666665

>TIGR01272 gluP glucose/galactose transporter

Probab=99.25  E-value=4.8e-10  Score=102.32  Aligned_cols=194  Identities=12%  Similarity=0.077  Sum_probs=122.1

Q ss_pred             hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCC
Q 020422          108 FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGG  187 (326)
Q Consensus       108 ~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~  187 (326)
                      ..++..++++-++.|.|.+...++.+.|+++..          ++|++++.+++....+.+|..+||+++..+......+
T Consensus         7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~----------~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~   76 (310)
T TIGR01272         7 QRYYVLFLGALFVLASGLTILQVAANPYVSILG----------PIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGD   76 (310)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHC----------CcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcc
Confidence            357888888999999999999999999999986          7788999999999999999999999987765321100


Q ss_pred             -----------CCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHH-H
Q 020422          188 -----------STSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLI-I  255 (326)
Q Consensus       188 -----------~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~  255 (326)
                                 ..+|+. +|.+.+++..+..+++.+.+.|+.+++++ ++...++. .      +..+.+++|.+++. .
T Consensus        77 ~~~~~~~~~~~~~~~~~-~yl~ia~~~~~~~i~~~~~~~p~~~~~~~-~~~~~~~~-~------~~~~~~~~~~~~l~~~  147 (310)
T TIGR01272        77 LSMQVATANAEAAKVHT-PYLLLAGALAVLAIIFAFLPLPELQEADV-ARVSSGDT-T------QKTSAFQFTHLVLGAL  147 (310)
T ss_pred             hhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHccCCCCCcccc-cccccccc-c------chhhHHhhHHHHHHHH
Confidence                       124655 45544444333333344443322211111 10000000 0      00134456666654 3


Q ss_pred             HHHHHhhHHHHHhhhcccccccc---cccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHH
Q 020422          256 PLFAYSGLQQAFVWAEFTKEIVT---PALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVF  321 (326)
Q Consensus       256 ~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~  321 (326)
                      ..+++.|.+.+.. ++++.++.+   .+++.++.+.....+..+.++|++++++++||  +|+++..+.++
T Consensus       148 ~~f~yvg~e~~~~-~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l  217 (310)
T TIGR01272       148 GIFVYVGAEVSAG-SFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFL  217 (310)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            4456677776542 233222221   24566788888999999999999999999999  44444444433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.25  E-value=2.3e-09  Score=100.25  Aligned_cols=277  Identities=12%  Similarity=0.083  Sum_probs=136.9

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhHHhhhhhhcC-CCCchhHHHHHHHHHH----hhhhhhHHHHHHHhchhhHHHHHhHHH
Q 020422           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNT-EGNLGTISLGILYTSF----TCFSLVASLVVRVLGSKNALILGTTGY   99 (326)
Q Consensus        25 ~~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~-~~~~g~~~~~~~~~~~----~~~~l~~g~l~d~~Grr~~l~~g~~~~   99 (326)
                      ++.++.+.+++.++++|..+......-+.... ..+++....++.+.+.    .+.+++.|.++||+|.|+-++....+.
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l   83 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAIL   83 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHH
Confidence            45578888999888887777655433333222 2344444455555544    345677889999999777766544333


Q ss_pred             HHHHHH----hhhhhh-HHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHH
Q 020422          100 WLFVAA----NLFPSW-YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN  174 (326)
Q Consensus       100 ~~~~~~----~~~~~~-~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~  174 (326)
                      .+....    .+.|-. ....+.-++.|+..+..+.+.........+|.+...+  .|--|.|.      ..++|.+++.
T Consensus        84 ~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~--feYG~~R~------wGSig~ai~s  155 (412)
T PF01306_consen   84 LLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNG--FEYGRARM------WGSIGFAIAS  155 (412)
T ss_dssp             HHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHS--S-HHHHHH------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhc--CCcchHHH------HhhHHHHHHH
Confidence            222211    122211 0112233444555444444433333333333332222  22233343      3477788888


Q ss_pred             HHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC-ccccccccccccchhhchHHHHHHHHHHhhhcchhHH
Q 020422          175 LITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE-EDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLL  253 (326)
Q Consensus       175 li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (326)
                      .+++.+...      +. ...|++..+.+++..++.++.+.+ +++.+.++.+  ..++.+  -..++..+.+|+|++|.
T Consensus       156 ~~~G~L~~i------~p-~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~l~k~~~fw~  224 (412)
T PF01306_consen  156 LLAGILFNI------NP-NIIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL--GAKKDK--VSLKDVLSLFKMRNFWF  224 (412)
T ss_dssp             HHHHHHHHH------HH-HHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS--SS--------HHHHHHHTTSHHHHH
T ss_pred             HHhheeeee------Cc-cHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc--ccCCCC--CcHHHHHHHhcchhHHH
Confidence            777776532      11 223444444444333333444322 1111111000  011111  12456678899999998


Q ss_pred             HHHHHHHh-hHHHHH--hhhcccc-cccccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh---hhhHHhHHHH
Q 020422          254 IIPLFAYS-GLQQAF--VWAEFTK-EIVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSV---HSLLVGLPLV  320 (326)
Q Consensus       254 l~~~~~~~-g~~~~~--~~~~~~~-~~~~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr---R~~~~~~g~~  320 (326)
                      +....... .....+  ....|.. .+.+.+.+.+..|+....--+.+++.-.+..++.+|   |+.+++.|.+
T Consensus       225 ~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i  298 (412)
T PF01306_consen  225 FVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVI  298 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHH
Confidence            65543222 111222  1112222 222334455567888888888888888999999999   6666665554

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.24  E-value=4e-10  Score=107.09  Aligned_cols=138  Identities=15%  Similarity=0.232  Sum_probs=101.1

Q ss_pred             HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-h-hh---hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhh
Q 020422           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L-FP---SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~-~~---~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~  144 (326)
                      +.-.++.++.|++.||+|||+++..+.++.++..... . .+   +++.+++.+++.|++.+...+....++++..    
T Consensus       262 i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~----  337 (418)
T TIGR00889       262 FSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEV----  337 (418)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
Confidence            3445667889999999999999999988776654332 2 22   2456677899999999988888888888886    


Q ss_pred             hhcCCCcccchhhHHHHHH-HHHHHhHHHHHHHHHHHhcCCC-CCCCCchhHHHHHHHHHHHHHH-HHHHhccCCcc
Q 020422          145 SNHKLHEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDK-GGSTSGTTLLFIVFLGVITLGT-ILMCFLRKEED  218 (326)
Q Consensus       145 ~~~~~~~~~~rg~~~gi~~-~~~~~g~~~G~li~~~l~~~~~-~~~~~wr~~~f~~~~~~~~l~~-il~~~l~~~~~  218 (326)
                            |+++||+.+|+.+ ....+|.++||++++.+.+..+ ....||+. .|.+.+++.+++. +..++++|+..
T Consensus       338 ------p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~-~f~~~~~~~~i~~~l~~~~~~~~~~  407 (418)
T TIGR00889       338 ------PVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQT-MWLFFAGYIAILAVLFMIFFKYSHN  407 (418)
T ss_pred             ------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHH-HHHHHHHHHHHHHHHHHHHhCCccc
Confidence                  8899999999997 5678999999999988876432 11146876 3555555555444 44567777644

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.24  E-value=5.2e-09  Score=100.79  Aligned_cols=133  Identities=6%  Similarity=-0.066  Sum_probs=89.5

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHh-chhhHHHHHhHHHHHHHHHh-hhh-hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhH
Q 020422           65 LGILYTSFTCFSLVASLVVRVL-GSKNALILGTTGYWLFVAAN-LFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~-Grr~~l~~g~~~~~~~~~~~-~~~-~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~  141 (326)
                      .+.......++++++|+++||+ |||+++++|.++.++..... ..+ +...++.+-.+.++|.|...+...++++|.++
T Consensus        51 ~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp  130 (493)
T PRK15462         51 FSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYE  130 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCC
Confidence            3444445567788999999999 99999999998876655432 222 22223333345556677766777788888862


Q ss_pred             hhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 020422          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (326)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~  211 (326)
                      +        ++++|++++++++.+.++|..++|.+.+.+.+.     .+|+.. |.+.++..+++.+.++
T Consensus       131 ~--------~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~-----~Gw~~~-F~iaaigm~l~li~~~  186 (493)
T PRK15462        131 P--------TDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE-----YSWAMG-FGLAAVGMIAGLVIFL  186 (493)
T ss_pred             C--------CCccccceehHHHHHHHHHHHHHHHHHHHHHhh-----hChHHH-HHHHHHHHHHHHHHHH
Confidence            1        223799999999999999999999999888653     478874 4443332334444433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.23  E-value=8.1e-10  Score=104.12  Aligned_cols=135  Identities=16%  Similarity=0.028  Sum_probs=92.8

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH-hhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      .+...++..++.++.|++.||+|||+.+..+.+..++.... ...++.+.++...++.|++.+...+...++..+..   
T Consensus       261 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---  337 (406)
T PRK11551        261 QIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFY---  337 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc---
Confidence            34444556777889999999999999988766554443333 24556555666677888887776676667777765   


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR  214 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~  214 (326)
                             |+++||+..|+......+|..+|+.+.+.+.+..    .+|.. .+.....+.+++.++.+.+.
T Consensus       338 -------p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~  396 (406)
T PRK11551        338 -------PTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG----RSTVG-VIGASIPVILVAALAALLLV  396 (406)
T ss_pred             -------chhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC----CchHH-HHHHHHHHHHHHHHHHHHHh
Confidence                   8899999999999999999999999988876532    13333 34444444444444444443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.23  E-value=8.4e-11  Score=112.00  Aligned_cols=234  Identities=9%  Similarity=0.024  Sum_probs=133.2

Q ss_pred             HHhhhhhhHHHHHH----HhchhhHHH-HHhHHHHHHHHHhh-h-h-hh------HHHHHHHHHhhhhhHHHHhhhhHHH
Q 020422           71 SFTCFSLVASLVVR----VLGSKNALI-LGTTGYWLFVAANL-F-P-SW------YTMVPASLYLGFAASIIWVGEGTYL  136 (326)
Q Consensus        71 ~~~~~~l~~g~l~d----~~Grr~~l~-~g~~~~~~~~~~~~-~-~-~~------~~l~~~r~l~G~g~g~~~~~~~~~l  136 (326)
                      .-++..++.|.++|    |+|||+..+ +|.+..++.....+ . | ++      ..+.+..++..++.........++.
T Consensus        49 ~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~  128 (428)
T PF13347_consen   49 WDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALI  128 (428)
T ss_pred             hhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcC
Confidence            34667788999999    899777665 46666666554433 3 3 11      1224455566777777666666677


Q ss_pred             HHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCC--CCchhHHHHHHHHHHHHHHHH-HHhc
Q 020422          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGS--TSGTTLLFIVFLGVITLGTIL-MCFL  213 (326)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~--~~wr~~~f~~~~~~~~l~~il-~~~l  213 (326)
                      .|..+         +++||.+..+.-..+..+|..+...+...+......+.  .+|+.. ..+.+++..+..++ .+..
T Consensus       129 ~~lt~---------~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~-~~v~~iv~~v~~~i~~~~~  198 (428)
T PF13347_consen  129 PELTP---------DPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWM-ALVLAIVGLVFFLITFFFV  198 (428)
T ss_pred             ccccc---------cHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHH-HHHHHHHHHHHhhhhhhee
Confidence            77652         46789999988777777777655555544443332211  257663 33344444443333 3445


Q ss_pred             cCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccccCc-chHHHHHHH
Q 020422          214 RKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV-SGVGGAMAV  292 (326)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~  292 (326)
                      ||++++.+++      +++.+.++.   .++.++||.++.+....++..+......+ +.+++.++.++. +..+.....
T Consensus       199 ke~~~~~~~~------~~~~~~~~~---~~~~~~nr~~~~l~~~~~~~~~~~~~~~~-~~~y~~~~vl~~~~~~~~~~~~  268 (428)
T PF13347_consen  199 KERSVEVTEQ------EKKISLRDS---LRSLFRNRPFRILLLAFFLQWLAFALMNT-FLPYYFTYVLGNEGLISIFMLI  268 (428)
T ss_pred             eecccccccc------ccccccccc---hhhhcccchHHHHHHHHHHHHhhhhhhhh-HHHHHHHHHhcCchhhHHHHHH
Confidence            6622111111      112233332   33566788877665554444333222221 222232222332 345666677


Q ss_pred             HHHHHHHHHHHhhhhhhh--hhhHHhHHHHHhhc
Q 020422          293 YGAFDAISLLGFATFFSV--HSLLVGLPLVFHLS  324 (326)
Q Consensus       293 ~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~~~  324 (326)
                      ..++..++.++.++++||  ||+.+..+.++.++
T Consensus       269 ~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~  302 (428)
T PF13347_consen  269 FFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAAL  302 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHccceeehhhhHHHHHH
Confidence            788889999999999999  67777776665543

>PRK12382 putative transporter; Provisional

Probab=99.21  E-value=1e-09  Score=103.05  Aligned_cols=126  Identities=13%  Similarity=0.110  Sum_probs=95.3

Q ss_pred             HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcC
Q 020422           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~  148 (326)
                      .+..+++++.|++.||+|||+.+..+..+.++..... ..++.+.++...++.|++.+..++...+.+.+..        
T Consensus       260 ~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--------  331 (392)
T PRK12382        260 GAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRV--------  331 (392)
T ss_pred             HHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc--------
Confidence            3456677899999999999999988877665554443 4567766777889999999987777666666664        


Q ss_pred             CCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 020422          149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (326)
Q Consensus       149 ~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~  211 (326)
                        |+++||+..|+++....+|..+|+.+.+.+.+.     .+|+. .|....++.+++.++.+
T Consensus       332 --~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~-----~g~~~-~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        332 --PSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS-----FGYPS-VFLAGAISAVLGIIVTI  386 (392)
T ss_pred             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCchH-HHHHHHHHHHHHHHHHH
Confidence              889999999999999999999999998887653     36766 35555555555555443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.18  E-value=1.6e-08  Score=95.41  Aligned_cols=267  Identities=18%  Similarity=0.066  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhhcCCCCchhHHH----HHHHHHHhhhhhhHHHHHHHhc-hhhHHHHHhHHHHHHHHH-h
Q 020422           33 LSCAFLLIFLAYGAAQNLETTVNTEGNLGTISL----GILYTSFTCFSLVASLVVRVLG-SKNALILGTTGYWLFVAA-N  106 (326)
Q Consensus        33 l~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~----~~~~~~~~~~~l~~g~l~d~~G-rr~~l~~g~~~~~~~~~~-~  106 (326)
                      ++.-+++.|..+.......+..-++.+.+....    ++......+++++.|.++||++ +|+.+.+..++.++.... .
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~   86 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            444455555554443322222222333333333    3334444566788899999986 566665555444332222 2


Q ss_pred             hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHH-HHHHhcCCC
Q 020422          107 LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI-TLAVLKDDK  185 (326)
Q Consensus       107 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li-~~~l~~~~~  185 (326)
                      ..++++.++..-++..+...+..+-..++..++.            +++++..|-.-...++|.+++.+. ...+....+
T Consensus        87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~------------~~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~  154 (400)
T PF03825_consen   87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYL------------GDRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLG  154 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHc------------ccccCCCCcchhhhhHHHHHHHHHHHHHHHhhhc
Confidence            3456665555555555555544443333333332            122222333333346666666443 222222111


Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHH
Q 020422          186 GGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQ  265 (326)
Q Consensus       186 ~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  265 (326)
                         .+.....+.+..+...+.....+.+|+.+++++.+.+    .++    ...++..+.+|||+++......+..+...
T Consensus       155 ---~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~~----~~~----~~~~~~~~llk~~~~~~Fll~~~l~~~~~  223 (400)
T PF03825_consen  155 ---ISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKES----VKK----LLGLDALKLLKNPRFLVFLLAAFLIGISH  223 (400)
T ss_pred             ---cccccHHHHHHHHHHHHHHHHHHhCCCCccccccCCC----ccc----ccchHHHHHhcCccHHHHHHHHHHHHHHH
Confidence               1111112333333333333334567776532221110    011    11123457889999887665555556555


Q ss_pred             HHhhhcccccccccc-cCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHh
Q 020422          266 AFVWAEFTKEIVTPA-LGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFH  322 (326)
Q Consensus       266 ~~~~~~~~~~~~~~~-~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~  322 (326)
                      ..+++.+..++.+.+ ...+..+.......++++..-.+.+++..|  .+.+++.+.+..
T Consensus       224 ~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~  283 (400)
T PF03825_consen  224 AAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAY  283 (400)
T ss_pred             HHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            554433333332212 223456666666667777777888888888  456666666554

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.17  E-value=3.3e-09  Score=102.90  Aligned_cols=138  Identities=10%  Similarity=0.025  Sum_probs=90.7

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH---h-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhH
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA---N-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~---~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~  141 (326)
                      ....++..+++++.|+++||+|||+++..+.++..+....   . ..++...+++++++.|++.+..+.....++.+.+ 
T Consensus       293 ~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~-  371 (490)
T PRK10642        293 IAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMF-  371 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
Confidence            3344455667788999999999999988877644332221   1 2345666777889988887776666667777765 


Q ss_pred             hhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 020422          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (326)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~  218 (326)
                               |++.||+..|+.+.....+..++|.+.+.+....    .+|+.. ++...+.++++.+..+++||+++
T Consensus       372 ---------p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~----~~~~~~-~~~~~~~~~i~~~~~~~~pes~~  434 (490)
T PRK10642        372 ---------PTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST----QNLMMP-AYYLMVVAVIGLITGVTMKETAN  434 (490)
T ss_pred             ---------CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCchHH-HHHHHHHHHHHHHHHHHhccccC
Confidence                     8999999999755545555667776665554321    245543 33344455555555667788765

>PRK11462 putative transporter; Provisional

Probab=99.16  E-value=1.7e-08  Score=97.26  Aligned_cols=219  Identities=7%  Similarity=-0.051  Sum_probs=120.4

Q ss_pred             HHhhhhhhHHHHHHH----hchhhHHH-HHhHHHHHHHHHh-hhhh------hHHHHHHHHHhhhhhHHHHhhhhHHHHH
Q 020422           71 SFTCFSLVASLVVRV----LGSKNALI-LGTTGYWLFVAAN-LFPS------WYTMVPASLYLGFAASIIWVGEGTYLTA  138 (326)
Q Consensus        71 ~~~~~~l~~g~l~d~----~Grr~~l~-~g~~~~~~~~~~~-~~~~------~~~l~~~r~l~G~g~g~~~~~~~~~l~~  138 (326)
                      .-++..++.|.++||    +|||+..+ +|.+.+++..... ..|+      ..-+.+..++..++....-..-.+..++
T Consensus        57 ~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~  136 (460)
T PRK11462         57 LDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGV  136 (460)
T ss_pred             HHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            347888999999996    68876655 5666666655543 3332      1223334556677777666666677777


Q ss_pred             HhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC--CCCCCchhHHHHHHHHHHHHHHHHHH-hccC
Q 020422          139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--GGSTSGTTLLFIVFLGVITLGTILMC-FLRK  215 (326)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~--~~~~~wr~~~f~~~~~~~~l~~il~~-~l~~  215 (326)
                      .++         +++||++..++...+.++|..+++.+...+.....  +...+|+.. ..++.++.++...+.+ ..+|
T Consensus       137 lt~---------d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~-~~i~~ii~~i~~~i~~~~~kE  206 (460)
T PRK11462        137 ITN---------DPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGG-IAVLSVVAFMMLAFCFFTTKE  206 (460)
T ss_pred             hcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH-HHHHHHHHHHHHHHHHhccee
Confidence            763         67899999999998888888888777544433221  111345542 2233333333332222 2344


Q ss_pred             CccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhh--hcccccccccccCc-chHHHHHHH
Q 020422          216 EEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVW--AEFTKEIVTPALGV-SGVGGAMAV  292 (326)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~-~~~g~~~~~  292 (326)
                      +.+++ +        ++.+.++.+   ...++|+.++.+....+..........  ..|...+   ..+. +..+..+..
T Consensus       207 ~~~~~-~--------~~~~~~~~l---~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y---~~g~~~~~~~~l~~  271 (460)
T PRK11462        207 RVEAP-P--------TTTSMREDL---RDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTW---ILGTPEVFVAFLTT  271 (460)
T ss_pred             ccCCC-c--------cCCCHHHHH---HHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhh---hcCChHHHHHHHHH
Confidence            32211 1        111233333   345667776655433222222111111  1122111   1222 234456677


Q ss_pred             HHHHHHHHHHHhhhhhhh--hhhH
Q 020422          293 YGAFDAISLLGFATFFSV--HSLL  314 (326)
Q Consensus       293 ~gi~~~~g~~~~G~l~Dr--R~~~  314 (326)
                      +++++.++..++++++||  ||..
T Consensus       272 ~~i~~iig~~l~~~l~~r~gkk~~  295 (460)
T PRK11462        272 YCVGNLIGSALAKPLTDWKCKVTI  295 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHH
Confidence            788889999999999999  4444

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.16  E-value=5.4e-09  Score=97.11  Aligned_cols=127  Identities=9%  Similarity=0.070  Sum_probs=92.1

Q ss_pred             HhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCC
Q 020422           72 FTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH  150 (326)
Q Consensus        72 ~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~  150 (326)
                      ..++.++.|++.||+|||+++..+.++..+..... ..++.+.++..+++.|++.+..++....+..+..          
T Consensus       248 ~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~----------  317 (375)
T TIGR00899       248 EIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLM----------  317 (375)
T ss_pred             HHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------
Confidence            34456788999999999999888766544433332 4567777777889999999888777667776663          


Q ss_pred             cccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 020422          151 EGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (326)
Q Consensus       151 ~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~  215 (326)
                       |++++++.+++....++|..+|+.+.+.+.+.     .+|+. .|...+++.+++.++..+++|
T Consensus       318 -~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~-----~g~~~-~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       318 -PGRAGAATTLYTNTGRVGWIIAGSVGGILAER-----WSYHA-VYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             -cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccchh-HHHHHHHHHHHHHHHHheecC
Confidence             45678999999999999999999998877653     35665 355555556666655555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.15  E-value=4.8e-09  Score=98.40  Aligned_cols=124  Identities=6%  Similarity=-0.006  Sum_probs=94.8

Q ss_pred             hhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCc
Q 020422           73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHE  151 (326)
Q Consensus        73 ~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~  151 (326)
                      .++.++.+++.||+|+|+.+.++.++.++..... +.++++.+++..++.|+..+..+++...|+.+.           |
T Consensus       254 i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-----------~  322 (382)
T TIGR00902       254 IIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-----------P  322 (382)
T ss_pred             HHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------C
Confidence            3445677899999999999999988877655544 678888888899999999999999988777754           6


Q ss_pred             ccchhhHHHHHH-HHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 020422          152 GTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR  214 (326)
Q Consensus       152 ~~~rg~~~gi~~-~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~  214 (326)
                      +++|++.++++. ....+|..+|+.+++.+.+..     ++.  .|...+++++++.++....+
T Consensus       323 ~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~-----g~~--~~~~~~~~~~~~~~~~~~~~  379 (382)
T TIGR00902       323 GSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL-----GAG--TFVFMAIIAAAAFFLIPKKL  379 (382)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cHH--HHHHHHHHHHHHHHHHHhcc
Confidence            778899999986 467789999999999987643     332  35566666666655544433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09848 glucuronide transporter; Provisional

Probab=99.10  E-value=3e-08  Score=94.98  Aligned_cols=227  Identities=12%  Similarity=-0.024  Sum_probs=110.2

Q ss_pred             HHHHHHHhhhhhhHHHHHHHh----chhhHH-HHHhHHHHHHHHH-hhhh-----h--hHHHHHHHHHhhhhhHHHHhhh
Q 020422           66 GILYTSFTCFSLVASLVVRVL----GSKNAL-ILGTTGYWLFVAA-NLFP-----S--WYTMVPASLYLGFAASIIWVGE  132 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~----Grr~~l-~~g~~~~~~~~~~-~~~~-----~--~~~l~~~r~l~G~g~g~~~~~~  132 (326)
                      +..-+..++..++.|.++||.    |||+.. +.+.+...+.... +..+     +  ....+..-.+.+++.+...++.
T Consensus        51 ~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (448)
T PRK09848         51 LLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPY  130 (448)
T ss_pred             HHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccH
Confidence            334455678889999999997    666655 4555444333222 2111     1  1122334467788888877766


Q ss_pred             hHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHH-----HhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHH
Q 020422          133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFA-----SHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT  207 (326)
Q Consensus       133 ~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~-----~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~  207 (326)
                      .+...+..+         +++||.+..++-..+.+     .+..++|+++.......   ..+|..  +  ..++++++.
T Consensus       131 ~al~~~~~~---------~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~---~~~~~~--~--~~~~~v~~~  194 (448)
T PRK09848        131 GSLATAMTQ---------QPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEM---VSVYHF--W--TIVLAIAGM  194 (448)
T ss_pred             hhhhhhhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch---hhhHHH--H--HHHHHHHHH
Confidence            666666542         55678887665543333     33444454443211000   011111  1  122222332


Q ss_pred             HHH----HhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccccCc
Q 020422          208 ILM----CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV  283 (326)
Q Consensus       208 il~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  283 (326)
                      ++.    ...||+.++++         ++.+.++.   .++.+|||.++......+.......... ...+.+..+.++.
T Consensus       195 ~~~~~~~~~~~e~~~~~~---------~~~~~~~~---~~~l~~n~~f~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~  261 (448)
T PRK09848        195 VLYFICFKSTRENVVRIV---------AQPSLKIS---LQTLKRNRPLFMLCIGALCVLISTFAVS-ASSLFYVRYVLND  261 (448)
T ss_pred             HHHHHHHcCcEeccCCCc---------cCCCHHHH---HHHHhCCchHHHHHHHHHHHHHHHHHHh-hhheeeEeeecCC
Confidence            222    22344322111         11122222   3356788888775544333222211111 2233333333333


Q ss_pred             c--hHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHH
Q 020422          284 S--GVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVF  321 (326)
Q Consensus       284 ~--~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~  321 (326)
                      +  ..++......++..++..+.++++||  +|+.+..|.++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~  303 (448)
T PRK09848        262 TGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALL  303 (448)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            2  23333333356677889999999999  56666666544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.09  E-value=3e-09  Score=98.34  Aligned_cols=124  Identities=12%  Similarity=-0.051  Sum_probs=88.4

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhh--hHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPS--WYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~--~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      +.......+++++.|++.||+|||+.+..+.++.++..... ..++  ...++....+.|++.+..++....++.|..  
T Consensus       247 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~--  324 (377)
T TIGR00890       247 SISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIF--  324 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHh--
Confidence            34444556778899999999999999988877666554433 3332  223345567888888877766666777775  


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHH
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL  205 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l  205 (326)
                              |+++||++.|++.....+|..+|+.+.+.+.+.     .+|+. .|.+..++.++
T Consensus       325 --------~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-----~g~~~-~f~~~~~~~~~  373 (377)
T TIGR00890       325 --------GPANSAANYGFLYTAKAVAGIFGGLIASHALTE-----IGFEY-TFIVTGAFALT  373 (377)
T ss_pred             --------hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh-----hchhh-HHHHHHHHHHH
Confidence                    788999999999999999999999998877643     35765 34444443333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.09  E-value=6.6e-09  Score=94.87  Aligned_cols=130  Identities=20%  Similarity=0.198  Sum_probs=101.1

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhh-HHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKN-ALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~-~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      +.......++.++.+++.||+|||+ .+..+.++..+..... ..++++.++....+.|++.+..++...+++.+..   
T Consensus       218 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---  294 (352)
T cd06174         218 SLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELA---  294 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhc---
Confidence            3344455667788899999999999 8888887776665554 5666777778899999999999999888888886   


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~  211 (326)
                             |+++|++.+|+.....+.|..+++.+.+.+.+.     .+|+. .+.+..++.+++.++.+
T Consensus       295 -------~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~-----~~~~~-~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         295 -------PPEARGTASGLFNTFGSLGGALGPLLAGLLLDT-----GGYGG-VFLILAALALLAALLLL  349 (352)
T ss_pred             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCcch-HHHHHHHHHHHHHHHhe
Confidence                   779999999999999999999999998887643     35665 35555555555554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.09  E-value=4.1e-09  Score=99.20  Aligned_cols=125  Identities=14%  Similarity=0.084  Sum_probs=94.5

Q ss_pred             HhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCC
Q 020422           72 FTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH  150 (326)
Q Consensus        72 ~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~  150 (326)
                      ..++.+..|++.||+|||+.+..+..+..+..+.. ..++.+.+++.+++.|++.+...+...+++.+..          
T Consensus       271 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------  340 (408)
T PRK09874        271 ALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNS----------  340 (408)
T ss_pred             HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhC----------
Confidence            34556678899999999999998877665544433 4566777778899999999998887777666654          


Q ss_pred             cccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 020422          151 EGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF  212 (326)
Q Consensus       151 ~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~  212 (326)
                      |+++||+.++++.....+|..+|+.+++.+.+.     .+|+. .|.+.+++.+++.++.++
T Consensus       341 ~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-----~g~~~-~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        341 SNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-----YGFRA-VFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             CcccceeeehHHHHHHHHHHHhhHHHHHHHHhh-----cchhH-HHHHHHHHHHHHHHHHHH
Confidence            778899999999999999999999998887653     35765 465666666666555443

>PRK03699 putative transporter; Provisional

Probab=99.09  E-value=9.9e-09  Score=96.63  Aligned_cols=134  Identities=11%  Similarity=0.038  Sum_probs=90.2

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      .+.......++.+..+++.||+|||+.+.....+..+..... ..++...+.....+.|++.+..++...++..+..   
T Consensus       247 ~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~---  323 (394)
T PRK03699        247 VSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT---  323 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence            455556678889999999999999999887665544433332 3455555555678889888877777666555542   


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~  215 (326)
                              ++++++..|.......+|..+||.+.+.+.+.     .+++.. +++..++.+++.++..++++
T Consensus       324 --------~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~-----~g~~~~-~~~~~~~~~~~~~~~~~~~~  381 (394)
T PRK03699        324 --------KVASPKLVNFILTCGTIGTMLTFVVTSPIVAH-----FGLQAA-LLTANGLYAVVFVMCILLGF  381 (394)
T ss_pred             --------cCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----hCchhh-hhhhHHHHHHHHHHHHHHHH
Confidence                    34567778888888889999999998877654     245553 44444444444444444444

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.07  E-value=1.2e-08  Score=98.14  Aligned_cols=178  Identities=13%  Similarity=0.122  Sum_probs=124.2

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhHHhhhhhhcC-CCCchhHH----HHHHHHHHhhhhhhHHHHHHHhchh--hHHHHHhH
Q 020422           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNT-EGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSK--NALILGTT   97 (326)
Q Consensus        25 ~~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~-~~~~g~~~----~~~~~~~~~~~~l~~g~l~d~~Grr--~~l~~g~~   97 (326)
                      ++.|++...-++++++-.+...+..+...+.. +.+.+...    ..+..++-.+++++.|++.||+|.|  +++..+.+
T Consensus       278 ~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~  357 (477)
T PF11700_consen  278 RKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI  357 (477)
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            45678888878877776666665544333322 22222222    2222334467788999999999999  88888887


Q ss_pred             HHHHHHHH-hh--------hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHH
Q 020422           98 GYWLFVAA-NL--------FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS  168 (326)
Q Consensus        98 ~~~~~~~~-~~--------~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~  168 (326)
                      .+.+..+. .+        .++.+.+++..++.|+..|+.++.+-++.++..          |+++.+..+|+|......
T Consensus       358 ~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~Li----------P~g~e~efFgly~i~gk~  427 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLI----------PPGREAEFFGLYAITGKA  427 (477)
T ss_pred             HHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhC----------CCchhhHHHHHHHHHHHH
Confidence            77443332 23        455566677889999999999999999999997          888999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCc
Q 020422          169 HQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE  217 (326)
Q Consensus       169 g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~  217 (326)
                      +..+||++-+.+.+..+    +-|.. +....++.+++.++.+.++.++
T Consensus       428 ss~lGPll~g~i~~~tg----~~r~g-~~~l~~lf~~gl~ll~~v~~~~  471 (477)
T PF11700_consen  428 SSWLGPLLFGLITDATG----SQRYG-FLFLLVLFLIGLILLFFVDVEK  471 (477)
T ss_pred             HHHHHHHHHHHHHHHhC----CchhH-HHHHHHHHHHHHHHHhhccchh
Confidence            99999998877766532    23442 4444555556666666666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.04  E-value=9.1e-09  Score=97.66  Aligned_cols=135  Identities=14%  Similarity=0.119  Sum_probs=97.3

Q ss_pred             HHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhh
Q 020422           67 ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS  145 (326)
Q Consensus        67 ~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~  145 (326)
                      +......++.++.|++.||+|||+.+..+.++.++..... +.++.+.++..+.+.|++.+...+....++.+..     
T Consensus       270 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-----  344 (420)
T PRK09528        270 FQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNF-----  344 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----
Confidence            3334556778899999999999999988888776655443 5678888888899999999887777777777765     


Q ss_pred             hcCCCcccchhhHHHH-HHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHH-HhccCCc
Q 020422          146 NHKLHEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEE  217 (326)
Q Consensus       146 ~~~~~~~~~rg~~~gi-~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~-~~l~~~~  217 (326)
                           |++.|+...+. +.....+|.++|+.+.+.+...     .||+. .|....++.+++.++. +.+++++
T Consensus       345 -----~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~-----~G~~~-~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        345 -----DVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS-----IGFQG-TYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             -----CccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh-----hCchH-HHHHHHHHHHHHHHHHHHHhcCCc
Confidence                 77778877655 5667789999999998887653     36776 3555555555444443 4445433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.01  E-value=2.2e-07  Score=89.51  Aligned_cols=252  Identities=13%  Similarity=0.103  Sum_probs=128.3

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHH-HHHHh--hhhh-hHHHHHHHHHhhhhhHHHHhhhhHHHHHHh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL-FVAAN--LFPS-WYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~-~~~~~--~~~~-~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~  140 (326)
                      .++..+..++..++.|.++|+-|+||.++......+. .++..  ..|+ ++...+.-++.-++.+....--.+|+.+.+
T Consensus        76 ~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la  155 (477)
T PF11700_consen   76 NSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLA  155 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhc
Confidence            4555566677788999999999988888775554433 33333  2333 332222223333333333334456777776


Q ss_pred             HhhhhhcCC----------------CcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCC---CCCchhHHHHHHHH
Q 020422          141 LSHASNHKL----------------HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGG---STSGTTLLFIVFLG  201 (326)
Q Consensus       141 ~~~~~~~~~----------------~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~---~~~wr~~~f~~~~~  201 (326)
                      +++...++.                ..+.+|++.+|.-+....+|..+-.++...+....+..   ..+-|.. +.+.++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~-~~~~a~  234 (477)
T PF11700_consen  156 RPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA-FLIVAL  234 (477)
T ss_pred             CCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH-HHHHHH
Confidence            322110000                00011288888888888888877777665554332211   1122332 222222


Q ss_pred             H-HHHHHHHHHhccCCcc-ccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHH-HHH-hhHHHHHhh-hcccccc
Q 020422          202 V-ITLGTILMCFLRKEED-KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPL-FAY-SGLQQAFVW-AEFTKEI  276 (326)
Q Consensus       202 ~-~~l~~il~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~g~~~~~~~-~~~~~~~  276 (326)
                      - .+.+...++++||+++ ++.+...   ..-..++++..+.+++..|+|.+...... +++ .|....... +.|....
T Consensus       235 ww~vfsiP~~~~~~~~~~~~~~~~~~---~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~  311 (477)
T PF11700_consen  235 WWLVFSIPLFLWLPDRPGPRPLPSGS---SYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEV  311 (477)
T ss_pred             HHHHHHHHHHHhCCCCCCCCCCCcch---hHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2 2344555677787654 2111110   01122344433333344455665553332 222 233332211 1222211


Q ss_pred             cccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh---h-hhHHhHHHHHh
Q 020422          277 VTPALGVSGVGGAMAVYGAFDAISLLGFATFFSV---H-SLLVGLPLVFH  322 (326)
Q Consensus       277 ~~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr---R-~~~~~~g~~~~  322 (326)
                        -+++.++.........+.+++|+++.|++.||   | ++++....++.
T Consensus       312 --lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  312 --LGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             --cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence              24555566777777888999999999999999   3 24555444433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.00  E-value=3.2e-08  Score=93.83  Aligned_cols=133  Identities=16%  Similarity=0.154  Sum_probs=92.5

Q ss_pred             HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcC
Q 020422           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~  148 (326)
                      ++..++.++.+++.||.++++.+..+.++.++..+.. ..++++......++.|++.+...+...+++.+..        
T Consensus       270 ~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------  341 (417)
T PRK10489        270 LGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQT--------  341 (417)
T ss_pred             HHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--------
Confidence            3445667788899999888888887776655544433 5677766667778889888876666666666665        


Q ss_pred             CCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHH-HHHHHHHHhccCCcc
Q 020422          149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVI-TLGTILMCFLRKEED  218 (326)
Q Consensus       149 ~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~-~l~~il~~~l~~~~~  218 (326)
                        |++.||+.+|++....++|..+|+.+.+.+.+..     +.+.. +.+.+++. +++++....+++.+.
T Consensus       342 --p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~-----g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  404 (417)
T PRK10489        342 --PDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM-----TPVAS-ASASGFGLLIIGVLLLLVLGELRR  404 (417)
T ss_pred             --CHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-----chhhH-HHHHHHHHHHHHHHHHHhcccccc
Confidence              8888999999999999999999999988887542     34332 33333333 334455556666443

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.98  E-value=1.7e-07  Score=90.93  Aligned_cols=131  Identities=11%  Similarity=0.039  Sum_probs=87.0

Q ss_pred             HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh----h-hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhh
Q 020422           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN----L-FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~----~-~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~  144 (326)
                      .+..++.++.|+++||+|+|+.+.++.++.++.....    . .++...+...-.+..+..|...++..++..+..    
T Consensus       270 i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~----  345 (491)
T PRK11010        270 LATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLC----  345 (491)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----
Confidence            3556778899999999999988877665444333221    1 234444443445545555555555556666665    


Q ss_pred             hhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 020422          145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (326)
Q Consensus       145 ~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~  216 (326)
                            +++.+++..|+.+...++|..+++.+.+.+.+.     .||+. .|.+..++++++.++...++++
T Consensus       346 ------~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~-----~G~~~-~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        346 ------NKSFSATQFALLSALSAVGRVYVGPVAGWFVEA-----HGWPT-FYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             ------CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hChHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence                  677889999999988899988877777777653     36765 4666667777777666666654

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.95  E-value=2.7e-07  Score=87.50  Aligned_cols=281  Identities=11%  Similarity=0.031  Sum_probs=146.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHHhHHhhhhhhc-CCCCchhHHHHHHHH----HHhhhhhhHHHHHHH----hchhhH-HH
Q 020422           24 KNYTRDVHILSCAFLLIFLAYGAAQNLETTVN-TEGNLGTISLGILYT----SFTCFSLVASLVVRV----LGSKNA-LI   93 (326)
Q Consensus        24 ~~~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~-~~~~~g~~~~~~~~~----~~~~~~l~~g~l~d~----~Grr~~-l~   93 (326)
                      |-.+|.-+--+.+-+..-..+...+.....+- +..+.+....+..+.    .-++.-++.|.++||    +||++. ++
T Consensus         8 kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL   87 (467)
T COG2211           8 KLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLL   87 (467)
T ss_pred             cccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHH
Confidence            33444445555554443333333332222222 223444333333333    337778899999885    675554 55


Q ss_pred             HHhHHHHHHHHHh-hhhh------hHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHH
Q 020422           94 LGTTGYWLFVAAN-LFPS------WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMF  166 (326)
Q Consensus        94 ~g~~~~~~~~~~~-~~~~------~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~  166 (326)
                      ++.+.+++.+... .+|+      ..-.++...+.+++-...-..-.+..+++.+         +++||.+..++-+.+.
T Consensus        88 ~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~---------d~~ER~~l~s~R~~~~  158 (467)
T COG2211          88 WGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQ---------DPQERASLTSWRMVFA  158 (467)
T ss_pred             HHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcC---------CHHHHHHHHHHHHHHH
Confidence            6778888777654 4552      2233345678888888776666777777763         6789999999887777


Q ss_pred             HHhHHHHHHHHHHHhcCCCCC--CCCchhHHHHHHHHHHHHHHHHH-HhccCCccccccccccccchhhchHHHHHHHHH
Q 020422          167 ASHQFVGNLITLAVLKDDKGG--STSGTTLLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSIT  243 (326)
Q Consensus       167 ~~g~~~G~li~~~l~~~~~~~--~~~wr~~~f~~~~~~~~l~~il~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (326)
                      +.|..+-..+...+......+  ..+|+.. -.++.+++++..+.. +-.+|+..+..+.+    +..+.++++   .+.
T Consensus       159 ~~g~~l~~~~~~plv~~~g~~~~~~g~~~~-~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~----~~~~~~~~~---~~~  230 (467)
T COG2211         159 SLGGLLVAVLFPPLVKLFGGGDKALGYQGT-ALVLGVIGVILLLFCFFNVKERVVETQPTK----TGVKLKLKD---SFL  230 (467)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcchhhHHHH-HHHHHHHHHHHHHHHHHHhhcccCccccCc----ccccccHHH---HHH
Confidence            777665544443333322211  2345431 122222222222222 23455443221110    001223322   223


Q ss_pred             HhhhcchhHHHHHHHHHhhHHHHHhhhcccccccccccCcc--hHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHH
Q 020422          244 TLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPL  319 (326)
Q Consensus       244 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~  319 (326)
                      ..++|+.++.+....++.......-. ....++.+..++.+  ...+.+.....+..++.++..++.+|  +|++...|.
T Consensus       231 ~~~~Nrp~~~~l~~~l~~~~~~~i~~-s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~  309 (467)
T COG2211         231 LIFKNRPLLLLLLMNLLLFIAFNIRG-SIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGL  309 (467)
T ss_pred             HHHccchHHHHHHHHHHHHHHHHHHh-hhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHH
Confidence            46678887776654433333222212 22222333334433  34555666666767778999999999  676666665


Q ss_pred             HHh
Q 020422          320 VFH  322 (326)
Q Consensus       320 ~~~  322 (326)
                      ++.
T Consensus       310 ~~~  312 (467)
T COG2211         310 LLL  312 (467)
T ss_pred             HHH
Confidence            443

>TIGR00898 2A0119 cation transport protein

Probab=98.95  E-value=4.1e-08  Score=95.39  Aligned_cols=129  Identities=14%  Similarity=0.071  Sum_probs=92.1

Q ss_pred             HhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhh--HHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcC
Q 020422           72 FTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSW--YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (326)
Q Consensus        72 ~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~--~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~  148 (326)
                      ...+.++.+.+.||+|||+++.++.++.++..+.. +.++.  ...+..-.+.+++.+..++....+..|.+        
T Consensus       368 ~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~--------  439 (505)
T TIGR00898       368 ELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY--------  439 (505)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------
Confidence            34566788999999999999999887766655443 33322  33344456667777777777777777776        


Q ss_pred             CCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 020422          149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (326)
Q Consensus       149 ~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~  218 (326)
                        |++.|++++|+......+|.+++|.+.+ +...      ++ ...+.+++++.+++.++.+++||+..
T Consensus       440 --p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~------~~-~~~~~~~~~~~~~~~~~~~~lpet~~  499 (505)
T TIGR00898       440 --PTVVRNLGVGVCSTMARVGSIISPFLVY-LGEK------WL-FLPLVLFGGLALLAGILTLFLPETKG  499 (505)
T ss_pred             --cHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHH------HH-hhHHHHHHHHHHHHHHHHHcCcCCCC
Confidence              8889999999999999999999998876 3221      12 23455666666666666778888654

>PRK10504 putative transporter; Provisional

Probab=98.95  E-value=4.3e-08  Score=94.40  Aligned_cols=100  Identities=17%  Similarity=0.121  Sum_probs=75.2

Q ss_pred             hhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-h---hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcC
Q 020422           73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L---FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (326)
Q Consensus        73 ~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~---~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~  148 (326)
                      .++.++.+++.||+|||+++..+..+.++..... .   .++...+...-++.|++.+..++....+..+..        
T Consensus       311 ~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--------  382 (471)
T PRK10504        311 MGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDL--------  382 (471)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------
Confidence            3445778999999999999998887666554432 2   123333344567788888888887777777665        


Q ss_pred             CCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       149 ~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                        |++++|.++|++.....+|..+|+.+.+.+..
T Consensus       383 --~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        383 --PDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             --CHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              78899999999999999999999988877654

>TIGR00897 2A0118 polyol permease family

Probab=98.95  E-value=5.4e-08  Score=91.90  Aligned_cols=131  Identities=15%  Similarity=0.168  Sum_probs=86.9

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHH-HHhHHHHHHHHHh-h-----hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHH
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALI-LGTTGYWLFVAAN-L-----FPSWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~-~g~~~~~~~~~~~-~-----~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~  138 (326)
                      +....+..+++++.|+++||+|||+.+. .+.+..++...+. .     .++.+.+++..++.|++.+...+. ...+.+
T Consensus       264 ~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~  342 (402)
T TIGR00897       264 GTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPT  342 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence            3444566788899999999999988764 2333222222211 1     235556666788889888875443 334444


Q ss_pred             HhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 020422          139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR  214 (326)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~  214 (326)
                      .           +|++||++.|+++....+|..+||.+.+.+.+.     .+|.. .+++.+++.+++.++..+++
T Consensus       343 ~-----------~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~-----~g~~~-~~~~~a~~~~i~~~~~~~~~  401 (402)
T TIGR00897       343 L-----------APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF-----FGAIG-VVWIFAALYVVSAFLTAFIR  401 (402)
T ss_pred             h-----------CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cchHH-HHHHHHHHHHHHHHHHHHhc
Confidence            3           556899999999999999999999998877654     35655 35555666666666655543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.94  E-value=9.8e-08  Score=89.39  Aligned_cols=123  Identities=17%  Similarity=0.123  Sum_probs=85.3

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHhhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhh
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS  145 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~  145 (326)
                      +.......+++++.|++.||+|+|+++..+....++..+... +.. ..+.+..+.|++.+..++...+++.+..     
T Consensus       242 ~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~~l~g~~~~~~~p~~~~~~~~~~-----  314 (381)
T PRK03633        242 ALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQA-AMAPALFILGAAGFTLYPVAMAWACEKV-----  314 (381)
T ss_pred             HHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hhH-HHHHHHHHHHHHHHhHHHHHHHHHHccC-----
Confidence            344455567788899999999999999888776655443332 222 3334677888887777777777666664     


Q ss_pred             hcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHH
Q 020422          146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLG  206 (326)
Q Consensus       146 ~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~  206 (326)
                           |+++++...+.+....++|..+||.+++.+.+..     +|++ .|.+.+++.++.
T Consensus       315 -----~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-----g~~~-~f~~~~~~~l~~  364 (381)
T PRK03633        315 -----EHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-----SDNL-LFIMIASVSFIY  364 (381)
T ss_pred             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CccH-HHHHHHHHHHHH
Confidence                 6677787888888888999999999988886542     4554 344444444443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.94  E-value=4.5e-08  Score=94.36  Aligned_cols=174  Identities=13%  Similarity=0.019  Sum_probs=99.1

Q ss_pred             hHHHHHHHHHHHHHHHHhHHhhhh-----hhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHH
Q 020422           29 DVHILSCAFLLIFLAYGAAQNLET-----TVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (326)
Q Consensus        29 ~~~~l~l~~~~~~~~~~~~~~l~~-----~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~  103 (326)
                      +++.+.+..++.+..+.......+     ..+.+........+....+..++.++.|+++||+|||+.+..+..+..+..
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~  338 (467)
T PRK09556        259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIF  338 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            455555555554444433332222     222222222223444555667888999999999999988766544333222


Q ss_pred             HH--h-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHH-hHHHHHHHHHH
Q 020422          104 AA--N-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNLITLA  179 (326)
Q Consensus       104 ~~--~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~-g~~~G~li~~~  179 (326)
                      ..  . ..++...+.+++++.|+...........+..|..          |+++||++.|+.....++ |..+++.+.+.
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~----------p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~  408 (467)
T PRK09556        339 TLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFV----------PKKAIGVANGIKGTFAYLFGDSFAKVGLGM  408 (467)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhc----------chhhHHHHHHHHHHHHHHHhHHHHhhhHHH
Confidence            11  1 2335555556777777654332222233444554          888999999999888776 76888888777


Q ss_pred             HhcCCCC-------CCCCchhHHHHHHHHHHHHHHHHHHhc
Q 020422          180 VLKDDKG-------GSTSGTTLLFIVFLGVITLGTILMCFL  213 (326)
Q Consensus       180 l~~~~~~-------~~~~wr~~~f~~~~~~~~l~~il~~~l  213 (326)
                      +.....+       ...+|+. .|.++.++.+++.+..+++
T Consensus       409 i~~~~~~g~~~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        409 IADPTKNGTPIFGYTLTGWAG-TFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             HhcccccccccccccccChHH-HHHHHHHHHHHHHHHHHHH
Confidence            7651000       0246776 3555566666665555444

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.93  E-value=6.2e-08  Score=87.90  Aligned_cols=136  Identities=11%  Similarity=0.074  Sum_probs=98.3

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH-hhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      ....+..+-+++...|.+.|++|||+.+........++... ...||+..+...|.+.|+|.|+ .|...++-.+.-   
T Consensus       119 t~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~l---  194 (528)
T KOG0253|consen  119 TLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFL---  194 (528)
T ss_pred             HHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhc---
Confidence            34456677888999999999999999998877766665554 4789999999999999999998 454444444543   


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~  218 (326)
                             |..+|+.-+=++ .....|.++...++.++..+     .|||+..|.. .....+.....+.++|+++
T Consensus       195 -------p~~~r~~~~V~~-~~waig~v~ea~law~vm~~-----~gwr~~l~~~-~~pl~~~a~f~~w~~ESpR  255 (528)
T KOG0253|consen  195 -------PSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN-----FGWRYLLFTS-STPLMFAARFLVWVYESPR  255 (528)
T ss_pred             -------cCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHH-HhHHHHHHHHHhhcccCcc
Confidence                   777888765555 67788888888888777654     4899854433 2333344455677888654

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.93  E-value=2.6e-08  Score=92.05  Aligned_cols=177  Identities=12%  Similarity=0.124  Sum_probs=123.3

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhHHhhhhhhcC-CCCchhHHH----HHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHH
Q 020422           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNT-EGNLGTISL----GILYTSFTCFSLVASLVVRVLGSKNALILGTTGY   99 (326)
Q Consensus        25 ~~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~-~~~~g~~~~----~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~   99 (326)
                      +..||+...-++.+++.-+...+..+...+.. +.++++..+    .....+-.+++++.|++.||+|.|+++..+.+++
T Consensus       249 ~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~  328 (438)
T COG2270         249 RGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVIL  328 (438)
T ss_pred             hcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHH
Confidence            44558887777777766665555544444433 344444332    2222344677889999999999999999999888


Q ss_pred             HHHHHH-hhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHH
Q 020422          100 WLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL  178 (326)
Q Consensus       100 ~~~~~~-~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~  178 (326)
                      .+..+. .+......+.....+.|+..|+.+..+-+|.++..          |++|-|+++|+|......++.+||.+.+
T Consensus       329 ~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lv----------p~~k~~~fFglyaltgra~S~~gp~lv~  398 (438)
T COG2270         329 SIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLV----------PKGKEGRFFGLYALTGRAASFLGPFLVA  398 (438)
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhC----------CCccccceeehhhhhhhHHHHHHHHHHH
Confidence            766554 34444444445779999999999999999999997          8889999999999999999999998877


Q ss_pred             HHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 020422          179 AVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (326)
Q Consensus       179 ~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~  216 (326)
                      .+.+..+    +-|.. +....++..++.++.+.+|++
T Consensus       399 v~t~iTg----~~r~g-~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         399 VITQITG----SSRAG-VLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHhc----chhhH-HHHHHHHHHhhHhhEEeecCC
Confidence            7665432    23442 323344444555555666665

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.92  E-value=1.3e-07  Score=89.06  Aligned_cols=138  Identities=8%  Similarity=-0.056  Sum_probs=85.6

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh--hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN--LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~--~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      .++..++..+++++.+++.||+|||+.+..+..+..+.....  ..++...+.  -.+.|++.+..++.......+..  
T Consensus       246 ~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~--  321 (393)
T PRK09705        246 LALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLW--AMVCGLGLGGAFPLCLLLALDHS--  321 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHH--HHHHHHhccchHHHHHHHHHhhc--
Confidence            344445557778889999999999999888776555544332  222222222  24567777776665544444433  


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHH-HHhccCCcc
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEED  218 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il-~~~l~~~~~  218 (326)
                             .|+++||+.+|+.+....++..+||.+.+.+....+    ++ ...|.+...+.+.+.+. ..+.||+.+
T Consensus       322 -------~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        322 -------VQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG----NY-LMDWAFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----Cc-hHHHHHHHHHHHHHHHHHHHhcccccc
Confidence                   246789999999999999999999999888765431    23 22343434444433333 345555443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.91  E-value=3.5e-07  Score=84.63  Aligned_cols=228  Identities=13%  Similarity=0.043  Sum_probs=128.6

Q ss_pred             hhhhhhHHHHHHHhc-----hhhHHHHHhHHH-HHHH--HH----hhhh--------hhH---HHHHHHHHhhhhhHHHH
Q 020422           73 TCFSLVASLVVRVLG-----SKNALILGTTGY-WLFV--AA----NLFP--------SWY---TMVPASLYLGFAASIIW  129 (326)
Q Consensus        73 ~~~~l~~g~l~d~~G-----rr~~l~~g~~~~-~~~~--~~----~~~~--------~~~---~l~~~r~l~G~g~g~~~  129 (326)
                      +...+..|..+|+.+     ||...+++.... ....  +.    .+..        .+.   ...++-.+.|+|.+..-
T Consensus        28 ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~  107 (403)
T PF03209_consen   28 APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASG  107 (403)
T ss_pred             HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhH
Confidence            556778899999999     998888755432 2211  11    1122        222   22233456677777666


Q ss_pred             hhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHH--
Q 020422          130 VGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT--  207 (326)
Q Consensus       130 ~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~--  207 (326)
                      ++-.+.++|.+          |||+|+++.++.|.+.-+|.+++.++.+.+...++     ...+ .-++-...++..  
T Consensus       108 T~~lALl~D~~----------~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s-----~~rL-~~v~~~~a~i~~~l  171 (403)
T PF03209_consen  108 TSFLALLADLA----------PEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS-----PERL-IQVIQGVALIALLL  171 (403)
T ss_pred             HHHHHHHHhcC----------CHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC-----HHHH-HHHHHHHHHHHHHH
Confidence            66566666655          99999999999999999999999988877766542     2221 222222222222  


Q ss_pred             -HHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccccccc--ccCcc
Q 020422          208 -ILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVS  284 (326)
Q Consensus       208 -il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~  284 (326)
                       ++..+=.|++..++.+   .+++++.++++..+   +...+|+.+..+...+ .+....+......+.|..+  +++++
T Consensus       172 ~~ia~wg~E~r~~~~~~---~~~~~~~~f~~a~~---~~~~~~~a~~f~~fl~-l~t~a~~~QD~iLEPygg~Vfgmsv~  244 (403)
T PF03209_consen  172 NLIALWGQEPRRSRRAA---AAERPRPPFREAWR---QVWASPQARRFFVFLF-LGTLAFFMQDVILEPYGGEVFGMSVG  244 (403)
T ss_pred             HHHHHHhcccCCccccc---CCCCCCccHHHHHH---HHHhCCChhHHHHHHH-HHHHHHHhhHHHcCCchhHHcCCCHH
Confidence             2223333433322210   01122335555444   4456666665443322 2222112122223333322  46677


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhh---hhhHHhHHHHHhh
Q 020422          285 GVGGAMAVYGAFDAISLLGFATFFSV---HSLLVGLPLVFHL  323 (326)
Q Consensus       285 ~~g~~~~~~gi~~~~g~~~~G~l~Dr---R~~~~~~g~~~~~  323 (326)
                      ++.......+.+..+|-.+.|++..|   .+.....|.++.+
T Consensus       245 eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~  286 (403)
T PF03209_consen  245 ETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGA  286 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            88888999999999999999988886   2334444554443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK03545 putative arabinose transporter; Provisional

Probab=98.91  E-value=1.6e-07  Score=88.14  Aligned_cols=126  Identities=13%  Similarity=-0.033  Sum_probs=84.4

Q ss_pred             HHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHH-H-hhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhh
Q 020422           68 LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA-A-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS  145 (326)
Q Consensus        68 ~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~-~-~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~  145 (326)
                      ......+++++.+++.||+|||+.+.. ..+...... . ...++.+.++.+.++.|++.+...+....++.+.      
T Consensus       250 ~~~~~~~g~~~~g~l~dr~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~------  322 (390)
T PRK03545        250 FGGAGIIGSVLFSRLGNRHPSGFLLIA-IALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKL------  322 (390)
T ss_pred             HHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHh------
Confidence            334556677889999999998875443 333222222 2 2345666666778888988766555544555544      


Q ss_pred             hcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 020422          146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (326)
Q Consensus       146 ~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~  211 (326)
                           .|++||+++|++....++|..+|+++++.+.+.     .+++. .|.+.+++.+++.+...
T Consensus       323 -----~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~-----~g~~~-~~~~~~~~~~~~~~~~~  377 (390)
T PRK03545        323 -----APDATDVAMALFSGIFNIGIGAGALLGNQVSLH-----LGLSS-IGYVGAALALAALVWSI  377 (390)
T ss_pred             -----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cChhH-HHHHHHHHHHHHHHHHH
Confidence                 346899999999999999999999999888754     35665 35555566666555443

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.90  E-value=1.9e-07  Score=88.71  Aligned_cols=191  Identities=15%  Similarity=0.059  Sum_probs=110.6

Q ss_pred             cccCc-cccchhHHHHHHHHHHHHHHHHhHH-hhhhhhc-CCCCchhH----HHHHHHHHHhhhhhhHHHHHHHhch-hh
Q 020422           19 QVLTP-KNYTRDVHILSCAFLLIFLAYGAAQ-NLETTVN-TEGNLGTI----SLGILYTSFTCFSLVASLVVRVLGS-KN   90 (326)
Q Consensus        19 ~~~~~-~~~~~~~~~l~l~~~~~~~~~~~~~-~l~~~l~-~~~~~g~~----~~~~~~~~~~~~~l~~g~l~d~~Gr-r~   90 (326)
                      .+++. +..||-+++..+-.++....+.... .+.++++ .|.+.+..    ..+..-++-+++++..|.-..|.+. |+
T Consensus        24 ~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~  103 (488)
T KOG2325|consen   24 SPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKK  103 (488)
T ss_pred             ccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCccc
Confidence            44433 3455666555555444443333211 2222222 13333332    2444555566677778888888885 77


Q ss_pred             HHHHHhHHHHHHHHHh-----hhh-hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHH
Q 020422           91 ALILGTTGYWLFVAAN-----LFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWG  164 (326)
Q Consensus        91 ~l~~g~~~~~~~~~~~-----~~~-~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~  164 (326)
                      .++.|.++..+..+..     ..+ +-+.++++|++.|+|.|... ..-+|+++.+          ..++|-|+++....
T Consensus       104 Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a-~lR~Y~a~~s----------~~~dR~rA~a~~~~  172 (488)
T KOG2325|consen  104 PLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA-VLRAYIADAS----------TVEDRPRAFAATSG  172 (488)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH-HHHHHHHhcc----------CccchHHHHHHhhh
Confidence            7777777665544432     223 45677789999999988643 3456777765          67889999998888


Q ss_pred             HHHHhHHHHHHHHHHHhcCCCCC-----CCCch--hHHHHHHHHHHHHHH-HHHHhccCCcccc
Q 020422          165 MFASHQFVGNLITLAVLKDDKGG-----STSGT--TLLFIVFLGVITLGT-ILMCFLRKEEDKG  220 (326)
Q Consensus       165 ~~~~g~~~G~li~~~l~~~~~~~-----~~~wr--~~~f~~~~~~~~l~~-il~~~l~~~~~~~  220 (326)
                      +..+|.++||.+..++..-...+     ...|.  +..-++..++.++.. ++.++++|..++.
T Consensus       173 ~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~  236 (488)
T KOG2325|consen  173 GFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGI  236 (488)
T ss_pred             HHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCc
Confidence            88899999988876654322111     01111  122335555555544 3456788866543

>PRK09952 shikimate transporter; Provisional

Probab=98.89  E-value=1.5e-07  Score=90.10  Aligned_cols=130  Identities=10%  Similarity=0.001  Sum_probs=84.3

Q ss_pred             HhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-h---h-hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhh
Q 020422           72 FTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L---F-PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN  146 (326)
Q Consensus        72 ~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~---~-~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~  146 (326)
                      ..++.++.|+++||+|||+++..+.++..+..... .   . ++...++...++.|++.+..++....+++|..      
T Consensus       299 ~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~------  372 (438)
T PRK09952        299 SCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMF------  372 (438)
T ss_pred             HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
Confidence            34566788999999999999887765443332221 1   1 23344444556678888887777788888886      


Q ss_pred             cCCCcccchhhHHHHHHHH-HHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 020422          147 HKLHEGTVIGSFNGEFWGM-FASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (326)
Q Consensus       147 ~~~~~~~~rg~~~gi~~~~-~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~  215 (326)
                          |.+.|+...|+.+.. ..+|..++|.+.+.+....   ..+|+. .+....++.+++.+..+.++|
T Consensus       373 ----p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~---~~~~~~-~~~~~~~~~~i~~v~~~~~~~  434 (438)
T PRK09952        373 ----GASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF---GGSWHS-VAIYLLAGCLISAMTALLMKD  434 (438)
T ss_pred             ----CcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---CCCchH-HHHHHHHHHHHHHHHHHHccc
Confidence                778898888885544 4478888888877775432   124654 343444555566555556665

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.85  E-value=6.7e-08  Score=89.82  Aligned_cols=109  Identities=16%  Similarity=-0.030  Sum_probs=78.5

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHH--HHh-h--hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHH
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV--AAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~--~~~-~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~  139 (326)
                      .+...+...++.++.|++.||+|||+.+..+..+..+..  ... .  .++.+.++...++.|++.+..++...+++.|.
T Consensus       261 ~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  340 (394)
T TIGR00883       261 LMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPEL  340 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence            334445556777889999999999998876554433322  111 2  23555666677888999988888888888888


Q ss_pred             hHhhhhhcCCCcccchhhHHHHH-HHHHHHhHHHHHHHHHHHhcC
Q 020422          140 ALSHASNHKLHEGTVIGSFNGEF-WGMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~gi~-~~~~~~g~~~G~li~~~l~~~  183 (326)
                      .          |+++|+++.++. ..+...|..+||.+++.+.+.
T Consensus       341 ~----------p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~  375 (394)
T TIGR00883       341 F----------PTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAM  375 (394)
T ss_pred             C----------CccceeeEeeehhHhHHHHHhhHHHHHHHHHHHH
Confidence            6          888999999984 455667888999988887654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00895 2A0115 benzoate transport

Probab=98.83  E-value=9.1e-08  Score=89.16  Aligned_cols=105  Identities=11%  Similarity=-0.026  Sum_probs=77.3

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHH-Hh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA-AN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~-~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      .+...++..++.++.+++.||+|||+.+.... +.++... .. ..++...++...++.|++.+..++...+++.+..  
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--  367 (398)
T TIGR00895       291 GALFNFGGVIGSIIFGWLADRLGPRVTALLLL-LGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFY--  367 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--
Confidence            34444556777889999999999995544333 3322222 22 2445555666778999999988888888888775  


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l  180 (326)
                              |+++||++.|+......+|..+||.+.+.+
T Consensus       368 --------~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       368 --------PTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             --------CHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence                    889999999999999999999999887654

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.83  E-value=3e-07  Score=85.21  Aligned_cols=127  Identities=11%  Similarity=0.028  Sum_probs=76.9

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhH--HHH------HhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHH
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNA--LIL------GTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYL  136 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~--l~~------g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l  136 (326)
                      +...+...++.++.+++.||+|||+.  ...      +.++.++..... ..++....+..-.+.+.+.+ ..+...+++
T Consensus       258 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  336 (399)
T TIGR00893       258 SLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALI  336 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHH
Confidence            33444556778899999999999961  111      111111111111 12344444333344444444 667777788


Q ss_pred             HHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCC-chhHHHHHHHHHHHHHHHH
Q 020422          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTS-GTTLLFIVFLGVITLGTIL  209 (326)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~-wr~~~f~~~~~~~~l~~il  209 (326)
                      .+..          |+++||++.|+......+|..+|+.+.+.+....     + |+. .|.+..++.+++.+.
T Consensus       337 ~~~~----------~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~-----g~~~~-~~~~~~~~~~~~~~~  394 (399)
T TIGR00893       337 SDNA----------PGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT-----GSFAG-ALMVVAALALIGALS  394 (399)
T ss_pred             Hhhc----------ChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC-----CchhH-HHHHHHHHHHHHHHH
Confidence            8876          8899999999999999999999999887775432     3 554 344444444444433

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.82  E-value=5.7e-07  Score=84.31  Aligned_cols=102  Identities=6%  Similarity=0.009  Sum_probs=78.8

Q ss_pred             HHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH-hhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCC
Q 020422           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL  149 (326)
Q Consensus        71 ~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~  149 (326)
                      ...+..++.+++.||+|+|+.+..+.++.++.... ...++.+.+++..++.|++.+..++....++.+.          
T Consensus       252 ~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~----------  321 (382)
T PRK11128        252 AEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAAR----------  321 (382)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
Confidence            34455678899999999999999888776664443 3567888778889999999998888777776664          


Q ss_pred             CcccchhhHHHHHH-HHHHHhHHHHHHHHHHHhcC
Q 020422          150 HEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       150 ~~~~~rg~~~gi~~-~~~~~g~~~G~li~~~l~~~  183 (326)
                       +++++++..+++. .....|..+|+.+++.+.+.
T Consensus       322 -~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~  355 (382)
T PRK11128        322 -PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH  355 (382)
T ss_pred             -CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             5566788899876 44567778999999888754

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.81  E-value=6.7e-10  Score=108.36  Aligned_cols=187  Identities=16%  Similarity=0.143  Sum_probs=3.0

Q ss_pred             HHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCC-C----C
Q 020422          112 YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD-K----G  186 (326)
Q Consensus       112 ~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~-~----~  186 (326)
                      ..++++.++.|+|.+++|+-..+|+.|+.          ++++-+...|++++...+|.++|-++++.....+ +    .
T Consensus       142 ~~f~~gq~l~GiG~~pl~tLG~tYiDDnv----------~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~  211 (539)
T PF03137_consen  142 YVFILGQLLIGIGATPLYTLGITYIDDNV----------SKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVP  211 (539)
T ss_dssp             ----------SSS-------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhccccCCccceeeeecccc----------ccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccc
Confidence            56778899999999999999999999998          7788899999999999999999988887665422 1    0


Q ss_pred             -----------CCCC-chhHHHHHHHHHHHHHHHHHHhccCCcccc----c-ccc-----ccc--c-chhh-------ch
Q 020422          187 -----------GSTS-GTTLLFIVFLGVITLGTILMCFLRKEEDKG----E-KET-----ADA--S-VNFY-------SY  234 (326)
Q Consensus       187 -----------~~~~-wr~~~f~~~~~~~~l~~il~~~l~~~~~~~----~-~~~-----~~~--~-~~~~-------~~  234 (326)
                                 .+.| | |+=|++.+.+.++..+.++++|+..++.    + ++.     ++.  . .++.       ..
T Consensus       212 ~~~~~i~p~dp~WvGAW-WLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (539)
T PF03137_consen  212 PDGVGITPSDPRWVGAW-WLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKS  290 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccCCCCCCCCccHHHHH-HHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhh
Confidence                       0112 2 2234444555555545556666633322    0 000     000  0 0000       11


Q ss_pred             HHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccccccccc--CcchHHHHHHHHHH-HHHHHHHHhhhhhhh
Q 020422          235 LVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPAL--GVSGVGGAMAVYGA-FDAISLLGFATFFSV  310 (326)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~gi-~~~~g~~~~G~l~Dr  310 (326)
                      .++..+.+++.++||.+.........-.+...-+. .|.|-+....+  +.+.+.++.....+ ++++|.+++|.+..|
T Consensus       291 ~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~-tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk  368 (539)
T PF03137_consen  291 IKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFA-TFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKK  368 (539)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             hhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEE
Confidence            23333455567788888765544322222222222 34444433333  33344444333222 556889999999998

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.81  E-value=2.6e-07  Score=81.13  Aligned_cols=183  Identities=13%  Similarity=0.118  Sum_probs=111.7

Q ss_pred             cCccccchhHHHHHHHHHHHHHHHHhHHhh-----hhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHH
Q 020422           21 LTPKNYTRDVHILSCAFLLIFLAYGAAQNL-----ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILG   95 (326)
Q Consensus        21 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~l-----~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g   95 (326)
                      .+....+-..+++...+++++.+.-+...+     ++.+..+....+...+..|...++.+++.|.++||+|++...+.+
T Consensus       257 tdv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~  336 (459)
T KOG4686|consen  257 TDVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVAS  336 (459)
T ss_pred             ccccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHH
Confidence            344445555666666666665554443333     333333333333346778888888899999999999999998887


Q ss_pred             hHHHHHHHHHhhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHH
Q 020422           96 TTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNL  175 (326)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~l  175 (326)
                      ..+..+..=..+.-+.+.=+.+-.++|+..+++-.+-.-.++...          ||++.|++.|..+...++|.++-++
T Consensus       337 a~~~tl~~H~~l~Ft~lsPy~~m~~lGLsysllAcslWP~va~~v----------pE~qLGTaygf~qsIqNLgla~i~I  406 (459)
T KOG4686|consen  337 ACILTLLGHSGLFFTFLSPYTSMTFLGLSYSLLACSLWPCVASLV----------PEEQLGTAYGFIQSIQNLGLAFIPI  406 (459)
T ss_pred             HHHHHHHHhhhHHhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhC----------CHHHhcchHHHHHHHHhhhhhHHhh
Confidence            765443322211111111123446778777653222222233333          8889999999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 020422          176 ITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (326)
Q Consensus       176 i~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~  215 (326)
                      +++++..+.  +++.|-..+|.+...++++.+.+.+.+.+
T Consensus       407 iag~i~d~~--g~y~~le~ffl~~~~~aL~svgil~~~N~  444 (459)
T KOG4686|consen  407 IAGFIADGD--GSYDNLEAFFLIIGLMALTSVGILFYLNK  444 (459)
T ss_pred             hhheeecCC--CchhhHHHHHHHHHHHHHHHHHHHhheec
Confidence            998886543  23556665454444445555555555444

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.78  E-value=1.5e-07  Score=86.69  Aligned_cols=105  Identities=14%  Similarity=0.101  Sum_probs=83.1

Q ss_pred             HHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhh-hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhh
Q 020422           68 LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFP-SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS  145 (326)
Q Consensus        68 ~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~-~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~  145 (326)
                      ..++..++.++.+++.||+|||+.+..+..+.++..... ..+ +.+.+++..++.|++.+...+...+++.+..     
T Consensus       256 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----  330 (365)
T TIGR00900       256 FGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRV-----  330 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----
Confidence            334455667788999999999999888766555444432 344 3667777889999999998888888888876     


Q ss_pred             hcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       146 ~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                           |+++||+..|++.....++..+|+.+.+.+.+
T Consensus       331 -----~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       331 -----PAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 88899999999999999999999998877654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.77  E-value=7.8e-08  Score=91.65  Aligned_cols=136  Identities=16%  Similarity=0.099  Sum_probs=84.2

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHhh------hh------hhHHHHHHHHHhhhhhHHH-Hhh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANL------FP------SWYTMVPASLYLGFAASII-WVG  131 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~~------~~------~~~~l~~~r~l~G~g~g~~-~~~  131 (326)
                      .........++.++.+++.||+|||+.+..+.++.++......      .+      ++..+... .+.+.+.+.. .+.
T Consensus       325 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  403 (481)
T TIGR00879       325 SIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFI-LLFIAFFAMGWGPV  403 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHH-HHHHHHHHccccCe
Confidence            3444455567788999999999999999888665544332211      11      22222222 2222222222 233


Q ss_pred             hhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHH-
Q 020422          132 EGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-  210 (326)
Q Consensus       132 ~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~-  210 (326)
                      ...++.|..          |+++|+++.|+......+|.++++.+.+.+...     .+|+. .|++.+++++++.++. 
T Consensus       404 ~~~~~~~~~----------p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~-----~~~~~-~f~~~~~~~~~~~i~~~  467 (481)
T TIGR00879       404 PWVIVSEIF----------PLSLRPKGISIAVAANWLANFIVGFLFPTMLES-----IGVGG-VFIFFGGLNVLGLIFVY  467 (481)
T ss_pred             ehhhhhccC----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCccc-eehhHHHHHHHHHHHHh
Confidence            445556664          888999999999999999999999887776543     24554 3555566666555544 


Q ss_pred             HhccCCc
Q 020422          211 CFLRKEE  217 (326)
Q Consensus       211 ~~l~~~~  217 (326)
                      ++.||++
T Consensus       468 ~~~~~~~  474 (481)
T TIGR00879       468 FFLPETK  474 (481)
T ss_pred             eecccCC
Confidence            3456544

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.77  E-value=9.7e-08  Score=91.80  Aligned_cols=126  Identities=9%  Similarity=-0.013  Sum_probs=84.3

Q ss_pred             HHHHHHHhhhhhhHHHHHHH--hchhhHHHHHh--HHHHHHHHH-hhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHh
Q 020422           66 GILYTSFTCFSLVASLVVRV--LGSKNALILGT--TGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~--~Grr~~l~~g~--~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~  140 (326)
                      ++..++..+++++.+.+.||  +++|+...++.  +..++..+. ...++++.++..+++.|++.+..++...+.+.+..
T Consensus       283 ~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~  362 (455)
T TIGR00892       283 SIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLV  362 (455)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHh
Confidence            33334445556778899997  44454444332  222222222 24567777788899999999998888888888876


Q ss_pred             HhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHH
Q 020422          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLG  206 (326)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~  206 (326)
                                |++++|+..|++....++|.++||.+++.+....    .+|+.. |.+.+++.+++
T Consensus       363 ----------~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~----g~~~~~-f~~~~~~~li~  413 (455)
T TIGR00892       363 ----------GAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT----KNYKYI-FYASGSIVVSA  413 (455)
T ss_pred             ----------hHHHHhhHHhHHHHHHHHHHHccccceeeeehhc----CCcchH-HHHhhHHHHHH
Confidence                      7789999999999999999999999987765432    146553 33334433333

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.76  E-value=6e-07  Score=85.70  Aligned_cols=130  Identities=17%  Similarity=0.079  Sum_probs=71.9

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHh--ch-hhHHHHHhHHHHHHHHH-hh--hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHH
Q 020422           65 LGILYTSFTCFSLVASLVVRVL--GS-KNALILGTTGYWLFVAA-NL--FPSWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~--Gr-r~~l~~g~~~~~~~~~~-~~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~  138 (326)
                      .+...+...++.++.|++.||+  ++ |+......+...+...+ ..  ..+...+....+..|++..........+..+
T Consensus       285 ~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  364 (434)
T PRK11663        285 VSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAE  364 (434)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence            4455556678889999999999  33 33322211111111111 11  1233333333333443322111112233344


Q ss_pred             HhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 020422          139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM  210 (326)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~  210 (326)
                      ..          |+++||+.+|+.+....+|..+||.+.+.+.+.     .+|+. .|...+++.+++.+..
T Consensus       365 ~~----------~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~-----~g~~~-~f~~~~~~~~~~~~~~  420 (434)
T PRK11663        365 CS----------HKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI-----WHWTG-FFVVISIAAGISALLL  420 (434)
T ss_pred             cc----------cHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh-----cccHH-HHHHHHHHHHHHHHHH
Confidence            43          788999999999999999999999888777653     35765 3555555555544433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.75  E-value=1.5e-06  Score=83.28  Aligned_cols=231  Identities=18%  Similarity=0.175  Sum_probs=133.0

Q ss_pred             hhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHhhhhhhHHHHHHHHHhhhhhHH--HHhhhhHHHHHHhHhhhhhcCCC
Q 020422           73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASI--IWVGEGTYLTAAALSHASNHKLH  150 (326)
Q Consensus        73 ~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~--~~~~~~~~l~~~~~~~~~~~~~~  150 (326)
                      .+..+..|.++||+|||..+....+...+...+.....|+.++    +.|+..+.  .+....+|++++.          
T Consensus        76 ~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~----~~~l~g~~~~~~s~~~a~vadis----------  141 (463)
T KOG2816|consen   76 LISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFL----LLGLSGGFSAIFSVGFAYVADIS----------  141 (463)
T ss_pred             HHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhh----hcccccchhhhhhhhhhheeecc----------
Confidence            4556788999999999999999887766655555444455544    44444432  4455677777775          


Q ss_pred             cccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHH-HHhccCCccccccc-cc-c-
Q 020422          151 EGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKGEKE-TA-D-  226 (326)
Q Consensus       151 ~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il-~~~l~~~~~~~~~~-~~-~-  226 (326)
                      .+++|....|+.+.....+..+||.++..+....+     - ...+.+..+..+++.+. .+++||+.++++++ .. + 
T Consensus       142 ~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~-----~-a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~  215 (463)
T KOG2816|consen  142 SEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG-----I-ALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRE  215 (463)
T ss_pred             chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC-----c-hHHHHHHHHHHHHHHHHHhhccccccCccccccccccc
Confidence            77899999999999999999999999887765431     1 22344444445554443 36788877654432 10 0 


Q ss_pred             ccchhh--chHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCcchHHHHHHHHHHHHHHHHH
Q 020422          227 ASVNFY--SYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAFDAISLL  302 (326)
Q Consensus       227 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~gi~~~~g~~  302 (326)
                      ....+.  ....+.++...+.-.+|..+.+....++.-.....-.....+.+..  -+.+.+..+......++...++++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l  295 (463)
T KOG2816|consen  216 LTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQL  295 (463)
T ss_pred             cCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHH
Confidence            000010  1112223333342244555554444333322222111111122222  245666777777777778888888


Q ss_pred             Hhhhhhhh---hhhHHhHHHHHhh
Q 020422          303 GFATFFSV---HSLLVGLPLVFHL  323 (326)
Q Consensus       303 ~~G~l~Dr---R~~~~~~g~~~~~  323 (326)
                      +...+.-+   -|.++..|.+.+.
T Consensus       296 ~~~~~l~~~l~~~~~i~lGl~~~~  319 (463)
T KOG2816|consen  296 LLLPLLSSILGEKRLISLGLLSEF  319 (463)
T ss_pred             HHHHHHHHHHhhhhHhhHHHHHHH
Confidence            87744444   2336666665443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.75  E-value=2.8e-07  Score=87.64  Aligned_cols=111  Identities=10%  Similarity=-0.105  Sum_probs=81.3

Q ss_pred             HHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hh-hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhh
Q 020422           69 YTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF-PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN  146 (326)
Q Consensus        69 ~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~-~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~  146 (326)
                      .+...++.++.++++||+|+|+++..+.++.++..... +. ++.+.+++..++.|++.+...+...++++|..|..   
T Consensus       267 ~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---  343 (437)
T TIGR00792       267 IVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYG---  343 (437)
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh---
Confidence            34445667888999999999999998887665544433 32 35555666778889999988888788888775311   


Q ss_pred             cCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       147 ~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                      +-..+++++|...|++.....+|..+|+.+.+.+..
T Consensus       344 ~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       344 EWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             hhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            001134567999999999999999999988877754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.74  E-value=2.6e-07  Score=91.35  Aligned_cols=187  Identities=17%  Similarity=0.179  Sum_probs=113.1

Q ss_pred             HHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC-C-----
Q 020422          113 TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-G-----  186 (326)
Q Consensus       113 ~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~-~-----  186 (326)
                      .++.+-++.|+|+.++++-..+|+.|+.          .+++-....|+++++..+|.++|-+++.+.++.+. .     
T Consensus       239 lff~~q~l~GIG~Tpi~tlGisYiDDnv----------k~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~  308 (735)
T KOG3626|consen  239 LFFLGQLLLGIGATPIFTLGISYIDDNV----------KKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPI  308 (735)
T ss_pred             HHHHHHHHhhcCCCCCccCCCccccccc----------cccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCC
Confidence            5667789999999999999999999997          56778899999999999999999999988775331 0     


Q ss_pred             --CCCCch-----hHHHHHHHHHHHHHHHHHHhccCCcccccc-----c-c---cccc-chhhc----hHHHHHHHHHHh
Q 020422          187 --GSTSGT-----TLLFIVFLGVITLGTILMCFLRKEEDKGEK-----E-T---ADAS-VNFYS----YLVSLSKSITTL  245 (326)
Q Consensus       187 --~~~~wr-----~~~f~~~~~~~~l~~il~~~l~~~~~~~~~-----~-~---~~~~-~~~~~----~~~~~~~~~~~~  245 (326)
                        ...+.|     |+=|++.+.+.++..+.++++|+..++..+     + .   .+.+ .++..    ..++..+.+++.
T Consensus       309 ~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~l  388 (735)
T KOG3626|consen  309 GITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRL  388 (735)
T ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHH
Confidence              011111     223555555556666667788875442110     0 0   0000 11111    233444556778


Q ss_pred             hhcchhHHHHHHHHHhhHHHHHhhhcccccccccccCc--chHHHHHHHHHH-HHHHHHHHhhhhhhh
Q 020422          246 LADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGA-FDAISLLGFATFFSV  310 (326)
Q Consensus       246 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~gi-~~~~g~~~~G~l~Dr  310 (326)
                      ++||.+...+..-..--+...-++ .|.|-+...+.+.  +.+-.++...++ +.++|.+++|++..|
T Consensus       389 l~N~if~~~~l~~~~~~~~~~G~~-tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikk  455 (735)
T KOG3626|consen  389 LSNPIFMLVVLASVIESLAITGYI-TFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKK  455 (735)
T ss_pred             hcCchHHHHHHHHHHHHHHHhhHH-HhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeee
Confidence            888888775443222222122222 3444443333443  344444443333 345678899999998

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.72  E-value=9.4e-07  Score=84.83  Aligned_cols=130  Identities=15%  Similarity=-0.045  Sum_probs=70.4

Q ss_pred             HHHhhhhhhHHHHHHHh--chhhHHH-HHhHHHHHHHHHh-h--hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           70 TSFTCFSLVASLVVRVL--GSKNALI-LGTTGYWLFVAAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~--Grr~~l~-~g~~~~~~~~~~~-~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      ....++.++.|+++||+  |||+... ....+..+..... .  ..+....+.+..+.|.+..........+..+..   
T Consensus       300 ~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---  376 (452)
T PRK11273        300 YAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELA---  376 (452)
T ss_pred             HHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHc---
Confidence            34455678899999999  5554332 2222222222221 2  223333333334444432222222223444444   


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHH-HHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFV-GNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~-G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~  215 (326)
                             |+++||+++|+.......|..+ ||.+.+.+...     .+|+. .|.+..+.++++.+....+..
T Consensus       377 -------p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~-----~g~~~-~f~~~~~~~~~~~~~~~~~~~  436 (452)
T PRK11273        377 -------PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-----FGWDG-GFMVMIGGSILAVILLIVVMI  436 (452)
T ss_pred             -------ChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH-----hcchH-HHHHHHHHHHHHHHHHHHHhc
Confidence                   8889999999998877777654 78777776543     24654 355555666666555444333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.71  E-value=1.2e-06  Score=82.50  Aligned_cols=124  Identities=15%  Similarity=0.134  Sum_probs=84.8

Q ss_pred             HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcC
Q 020422           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~  148 (326)
                      +...++.++.|++.||+|||+.+.++.+++++..... ..++.+.++..+++.|++.+........+..+..        
T Consensus       265 i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--------  336 (396)
T TIGR00882       265 LLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF--------  336 (396)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------
Confidence            3445567888999999999999999888777655543 5677777788899999887665544444444433        


Q ss_pred             CCcccchhhHHHH-HHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 020422          149 LHEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL  209 (326)
Q Consensus       149 ~~~~~~rg~~~gi-~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il  209 (326)
                        +++.++...+. +....++|..+|+++++.+.+.     .|++. .|.+..++..+..++
T Consensus       337 --~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~-----~G~~~-~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       337 --DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS-----IGFQG-AYLVLGCIVLLFTLI  390 (396)
T ss_pred             --CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh-----cccHH-HHHHHHHHHHHHHHH
Confidence              55556665555 5667889999999998888653     25655 354445444444433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.70  E-value=1.7e-07  Score=91.15  Aligned_cols=135  Identities=11%  Similarity=0.020  Sum_probs=79.1

Q ss_pred             hhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH-hh-h---hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhc
Q 020422           73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NL-F---PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH  147 (326)
Q Consensus        73 ~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~-~~-~---~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~  147 (326)
                      .++.+++++++||+|||++++.+..+.++.... .. .   ++...+...-+...++....++....+.+|..       
T Consensus       349 i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~-------  421 (502)
T TIGR00887       349 VPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF-------  421 (502)
T ss_pred             HHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC-------
Confidence            345677899999999999998877665443322 11 1   11111111111111111112223345566765       


Q ss_pred             CCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC-C-C---CCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 020422          148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-G-G---STSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (326)
Q Consensus       148 ~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~-~-~---~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~  218 (326)
                         |++.|+++.|+......++.++++.+.+.+..... + +   ..+.. ..|++++++.+++.+..+++||++.
T Consensus       422 ---p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~i~~~~lpEt~~  493 (502)
T TIGR00887       422 ---PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMG-HVLEIFALFMFLGILFTLLIPETKG  493 (502)
T ss_pred             ---chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccch-HHHHHHHHHHHHHHHHheEeccCCC
Confidence               88999999999999999999999887766644210 0 0   01222 2366667666666555667788654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09848 glucuronide transporter; Provisional

Probab=98.70  E-value=3.3e-07  Score=87.77  Aligned_cols=108  Identities=13%  Similarity=-0.057  Sum_probs=78.7

Q ss_pred             HhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hh--hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcC
Q 020422           72 FTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (326)
Q Consensus        72 ~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~--~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~  148 (326)
                      ..+++++.+++.||+|+|+++.+|.++..+..+.. +.  ++++.++..-++.|+|.+...+...+..++..|....   
T Consensus       277 ~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~---  353 (448)
T PRK09848        277 TVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY---  353 (448)
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---
Confidence            34567788999999999999999887765544433 32  3555566667889999999888888888887642111   


Q ss_pred             CCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       149 ~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                      ...++++|...|++.....+|..+|+.+.+.+..
T Consensus       354 ~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        354 LTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             hhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0123456999999999999999999988766653

>TIGR00901 2A0125 AmpG-related permease

Probab=98.70  E-value=1.6e-07  Score=87.01  Aligned_cols=85  Identities=14%  Similarity=0.015  Sum_probs=67.5

Q ss_pred             hhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh--hh----------hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHh
Q 020422           73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN--LF----------PSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (326)
Q Consensus        73 ~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~--~~----------~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~  140 (326)
                      .++.+++|++.||+|||+.+..+.++.++.....  ..          ++.+.+..+.++.|++.+..++...+++.+.+
T Consensus       259 ~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  338 (356)
T TIGR00901       259 ILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLS  338 (356)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            4667889999999999999888887665544432  22          34566667788999999999999999999987


Q ss_pred             HhhhhhcCCCcccchhhHHHHHHHHHH
Q 020422          141 LSHASNHKLHEGTVIGSFNGEFWGMFA  167 (326)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~gi~~~~~~  167 (326)
                                |+++||+.+|++.+..+
T Consensus       339 ----------p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       339 ----------NPKFGATQMALLSSLSA  355 (356)
T ss_pred             ----------CCCccHHHHHHHHHHHh
Confidence                      99999999998866543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.70  E-value=2.2e-07  Score=87.01  Aligned_cols=108  Identities=9%  Similarity=-0.059  Sum_probs=80.0

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH-h-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-N-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~-~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      +...++..++.++.+++.||+|||+.+..+.++.++.... . ..++.+.+.+...+.|+..+..++....++.+..   
T Consensus       281 ~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  357 (405)
T TIGR00891       281 VFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYF---  357 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhC---
Confidence            3344455677889999999999999998877654333322 2 2345555555556777776666666667777765   


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~  183 (326)
                             |+++||+++|+.+....+|..+||++.+.+.+.
T Consensus       358 -------~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~  390 (405)
T TIGR00891       358 -------PTDQRAAGLGFTYQLGNLGGALAPIIGALLAQR  390 (405)
T ss_pred             -------CcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   889999999999999999999999998888754

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.69  E-value=7e-07  Score=86.46  Aligned_cols=108  Identities=7%  Similarity=-0.094  Sum_probs=72.6

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-h--hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      +...++..+++++.|++.||+|||+++..+.++.++..+.. .  .++++.+....++.|.......+...+++.+..  
T Consensus       318 ~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  395 (496)
T PRK03893        318 FFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYF--  395 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhC--
Confidence            44444556778899999999999999888776554443322 2  233333333444443333233344445666654  


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~  183 (326)
                              |+++||+.+|+++....+|..+|+.+++.+.+.
T Consensus       396 --------~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~  428 (496)
T PRK03893        396 --------DTEQRAAGLGFTYNVGALGGALAPILGALIAQR  428 (496)
T ss_pred             --------CHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence                    888999999999999999999999998887654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.69  E-value=2.4e-06  Score=80.73  Aligned_cols=129  Identities=16%  Similarity=0.259  Sum_probs=89.9

Q ss_pred             hhHHHHHHHhchhhHHHHHhHHHHH-HHHH-hhhhhhHHH----HHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCC
Q 020422           77 LVASLVVRVLGSKNALILGTTGYWL-FVAA-NLFPSWYTM----VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH  150 (326)
Q Consensus        77 l~~g~l~d~~Grr~~l~~g~~~~~~-~~~~-~~~~~~~~l----~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~  150 (326)
                      ++.+++.+|+|.|+++.++.+.+++ +... ...++.+..    ...-.+.|+.-+..|.+...|+.+.+          
T Consensus       261 ~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~----------  330 (400)
T PF03825_consen  261 FFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIA----------  330 (400)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC----------
Confidence            3578999999999999999988877 4333 232443332    23345799999999999999999997          


Q ss_pred             cccchhhHHHHHHHH-HHHhHHHHHHHHHHHhcCCC-CCCCCchhHHHHHHHHHHHHHHHHH-HhccCC
Q 020422          151 EGTVIGSFNGEFWGM-FASHQFVGNLITLAVLKDDK-GGSTSGTTLLFIVFLGVITLGTILM-CFLRKE  216 (326)
Q Consensus       151 ~~~~rg~~~gi~~~~-~~~g~~~G~li~~~l~~~~~-~~~~~wr~~~f~~~~~~~~l~~il~-~~l~~~  216 (326)
                      |++.|+++.+++... ..+|..+|+.+++.+.+..+ .+...|.. +|.+.+++.++..+++ ++.||+
T Consensus       331 p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~-~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  331 PPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSA-VFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             CccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHH-HHHHHHHHHHHHHHHHHhhccCC
Confidence            889999999998875 57899999999999887543 11122322 3444444444444443 344543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.68  E-value=2e-06  Score=81.23  Aligned_cols=102  Identities=8%  Similarity=-0.041  Sum_probs=73.2

Q ss_pred             HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-h-----hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L-----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~-----~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      ....++.++.+++.||+|+|+.+..+.++.++..... .     .+++..++..-++.|+|.+...+.........    
T Consensus       262 ~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~----  337 (406)
T PRK15402        262 GALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS----  337 (406)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh----
Confidence            3456677889999999999999888776554433322 1     12444455667889999988776544433222    


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                             ++++||+..+.+......|..+|+.+++.+..
T Consensus       338 -------~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        338 -------SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             -------ccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                   45899999999999898999999888877644

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.67  E-value=5.5e-07  Score=86.79  Aligned_cols=107  Identities=9%  Similarity=-0.030  Sum_probs=79.1

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHhh---h--hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHh
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAANL---F--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~~---~--~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~  140 (326)
                      ....++..++.++.|++.||+|||+.+..+.++.++......   .  .++..++..-++.|+|.+..++.......+..
T Consensus       298 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~  377 (485)
T TIGR00711       298 LPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGL  377 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            334455667788999999999999999888776655444321   1  23455555678899999987765554444433


Q ss_pred             HhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                                |+++||++.|++.....+|..+|+.+.+.+..
T Consensus       378 ----------~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       378 ----------PPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             ----------CHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      88999999999999999999999988777654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.67  E-value=1.5e-06  Score=83.68  Aligned_cols=140  Identities=12%  Similarity=0.063  Sum_probs=83.9

Q ss_pred             HHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-h--hhhh--HHHHHHHHHhhhhhHHHH-hhhhHHHHHHhH
Q 020422           68 LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L--FPSW--YTMVPASLYLGFAASIIW-VGEGTYLTAAAL  141 (326)
Q Consensus        68 ~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~--~~~~--~~l~~~r~l~G~g~g~~~-~~~~~~l~~~~~  141 (326)
                      ..+...++.+++++++||+|||+.++.+.++.++..... .  .++.  .....+-++.+.+.+..+ +....++.|.. 
T Consensus       315 ~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-  393 (479)
T PRK10077        315 VGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIF-  393 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhC-
Confidence            334556778899999999999999999888766544432 1  1111  112223334444444333 34566777775 


Q ss_pred             hhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc-CCCCCCCCchhHHHHHHHHHHHHHHHHH-HhccCCcc
Q 020422          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK-DDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEED  218 (326)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~-~~~~~~~~wr~~~f~~~~~~~~l~~il~-~~l~~~~~  218 (326)
                               |+++||+++|+......+|.++++.+.+.+.. ....+..+|+. .|.++.+..+++.++. ++.||++.
T Consensus       394 ---------p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~  462 (479)
T PRK10077        394 ---------PNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGF-SYWIYGCMGVLAALFMWKFVPETKG  462 (479)
T ss_pred             ---------ChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCcc-HHHHHHHHHHHHHHHHHhccccCCC
Confidence                     88899999999999888998888766544331 00011245544 3555555555444443 45566543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.64  E-value=4.1e-09  Score=92.26  Aligned_cols=132  Identities=14%  Similarity=0.294  Sum_probs=95.8

Q ss_pred             HHHHHhHHhhhhhhcCCCCchhHHHHHHHHHHh----hhhhhHHHHHHH-hchhhHHHH-HhHHH---HHHHHHhhhhhh
Q 020422           41 FLAYGAAQNLETTVNTEGNLGTISLGILYTSFT----CFSLVASLVVRV-LGSKNALIL-GTTGY---WLFVAANLFPSW  111 (326)
Q Consensus        41 ~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~----~~~l~~g~l~d~-~Grr~~l~~-g~~~~---~~~~~~~~~~~~  111 (326)
                      +..|.....+|.+++.|.+.......++|..|.    +-++++|++.|| +|-|+.-.+ ..+++   .+|++....+.+
T Consensus        57 yfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aF  136 (459)
T KOG4686|consen   57 YFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAF  136 (459)
T ss_pred             eeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence            345566678888998888777766666777663    446788998875 555543222 22211   233333467889


Q ss_pred             HHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          112 YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       112 ~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                      +++.+.|++-|+|.--+-.+|.+|...+.          ..||.+.++|++.+..-+|+.+.-.+.+++..
T Consensus       137 w~M~~GRF~FGIGgESlAVaQN~yav~wF----------KGKELn~vfGlqlSvAR~GstvNf~lm~~ly~  197 (459)
T KOG4686|consen  137 WTMLAGRFLFGIGGESLAVAQNKYAVYWF----------KGKELNFVFGLQLSVARLGSTVNFLLMPFLYD  197 (459)
T ss_pred             HHHHhhheeeccCchhhhhhhcceeEEEe----------cCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence            99999999999999888888888887776          78899999999998888888887666666654

>PRK10054 putative transporter; Provisional

Probab=98.63  E-value=2.8e-06  Score=80.19  Aligned_cols=98  Identities=10%  Similarity=-0.006  Sum_probs=76.2

Q ss_pred             hhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-h-hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcc
Q 020422           75 FSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L-FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEG  152 (326)
Q Consensus        75 ~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~-~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~  152 (326)
                      .+++.+.+.||+++|+.+..+.++.++..... + .++.+.+..+.++.|+|.+...+...+++.+..          |+
T Consensus       260 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~----------p~  329 (395)
T PRK10054        260 LQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIA----------PP  329 (395)
T ss_pred             ehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC----------Cc
Confidence            34677899999999999988877666554443 3 356666667889999999988888777787776          78


Q ss_pred             cchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 020422          153 TVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       153 ~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~  183 (326)
                      +.||+.++... ...+|..+||.+++.+.+.
T Consensus       330 ~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~  359 (395)
T PRK10054        330 GMKASYFSAQS-LGWLGAAINPLVSGVILTT  359 (395)
T ss_pred             ccceehHhHHH-HHHHHHHHHHHHHHHHHHH
Confidence            89999988754 4558899999998888764

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.62  E-value=1.3e-06  Score=82.44  Aligned_cols=96  Identities=11%  Similarity=-0.028  Sum_probs=71.7

Q ss_pred             hHHHHH-HHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccch
Q 020422           78 VASLVV-RVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVI  155 (326)
Q Consensus        78 ~~g~l~-d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~r  155 (326)
                      +.++.. ||++.++.+..+.++.++..... ..++++.++....+.|++.+...+...+++.+..          |+++|
T Consensus       262 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~----------p~~~~  331 (400)
T PRK11646        262 PIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLA----------DARAR  331 (400)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcC----------Ccccc
Confidence            334444 55776776677666665544433 4566666666778888888877777777777765          88999


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 020422          156 GSFNGEFWGMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       156 g~~~gi~~~~~~~g~~~G~li~~~l~~~  183 (326)
                      |+.+|++......|..+|+.+++.+.+.
T Consensus       332 g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        332 GSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             hhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            9999999999999999999999888764

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.62  E-value=1e-05  Score=77.39  Aligned_cols=232  Identities=16%  Similarity=0.127  Sum_probs=128.6

Q ss_pred             hhhhHHHHHHHhc-----hhhHHHHHhHHHHHHHHHh-h----hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhh
Q 020422           75 FSLVASLVVRVLG-----SKNALILGTTGYWLFVAAN-L----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (326)
Q Consensus        75 ~~l~~g~l~d~~G-----rr~~l~~g~~~~~~~~~~~-~----~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~  144 (326)
                      ..++.|.++|-+-     ||+-++++.++-+++.... .    ..+.....+.-.+.-+|.+..-..+-+...|..++  
T Consensus        40 ~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~--  117 (433)
T PF03092_consen   40 IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARR--  117 (433)
T ss_pred             HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhc--
Confidence            3578899999883     6666666665543333322 2    12444444455667777777777777788887755  


Q ss_pred             hhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCcccccccc
Q 020422          145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKET  224 (326)
Q Consensus       145 ~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~  224 (326)
                            .|++||...+..+....+|..+|..+++.+....     +.+.. |.+...+..+..+..+++.|+..++++++
T Consensus       118 ------~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-----~~~~~-f~i~~~~~~l~~~~~~~~~~e~~~~~~~~  185 (433)
T PF03092_consen  118 ------EPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-----GPQGV-FLISAALPLLMLIVALFLLEERKVRPADE  185 (433)
T ss_pred             ------CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-----CCeEE-ehHHHHHHHHHHHHHHHhhhhccccccch
Confidence                  4445999999999999999999998887776543     34442 44445454444444444444222111110


Q ss_pred             -c---cccchh-hchHHHHHHHHHHhhhcchhHHHHH-HHHHhhHHHHHhhh-cccccccccc---cCcchHHHHHHHHH
Q 020422          225 -A---DASVNF-YSYLVSLSKSITTLLADVRMLLIIP-LFAYSGLQQAFVWA-EFTKEIVTPA---LGVSGVGGAMAVYG  294 (326)
Q Consensus       225 -~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~~~~~-~~~~~~~~~~---~~~~~~g~~~~~~g  294 (326)
                       .   +.+.+. ....++..+++++.++++.++.... ..++.........+ .|.-.-..++   ++.+..+.+.....
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~  265 (433)
T PF03092_consen  186 VFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGS  265 (433)
T ss_pred             hhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHH
Confidence             0   000011 1125667777888888887776433 21111111111111 1110000122   45556677777777


Q ss_pred             HHHHHHHHHhh-hhhhh--hhhHHhHHHH
Q 020422          295 AFDAISLLGFA-TFFSV--HSLLVGLPLV  320 (326)
Q Consensus       295 i~~~~g~~~~G-~l~Dr--R~~~~~~g~~  320 (326)
                      ++..+|..+.. +++++  |+.+.....+
T Consensus       266 ~~~l~g~~~y~~~~~~~~~R~~~~~t~~~  294 (433)
T PF03092_consen  266 IASLLGILLYRKYFSNWSWRRIFVVTTLV  294 (433)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            77777777665 56666  6665554443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.61  E-value=1.7e-06  Score=82.44  Aligned_cols=152  Identities=18%  Similarity=0.071  Sum_probs=100.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhHH----hhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHH
Q 020422           28 RDVHILSCAFLLIFLAYGAAQ----NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (326)
Q Consensus        28 ~~~~~l~l~~~~~~~~~~~~~----~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~  103 (326)
                      |++..+.+..++...+....+    ...++...+.+....-..+.++...++.++.++++||+|+|+++..+.+++++..
T Consensus       225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~  304 (428)
T PF13347_consen  225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGF  304 (428)
T ss_pred             chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHH
Confidence            445555555554444443322    2222222222322222344455556677888999999999999999999887766


Q ss_pred             HHh-hh--hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 020422          104 AAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (326)
Q Consensus       104 ~~~-~~--~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l  180 (326)
                      +.. +.  +|.+.+++.-++.|++.+..++...+.++|..|...+..   .+++.|...|++.....++..+++.+.+.+
T Consensus       305 ~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~t---g~r~~g~~~s~~~~~~k~~~~la~~i~g~~  381 (428)
T PF13347_consen  305 LLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKT---GRRREGMYFSVNSFFIKIGQGLAGAIVGLL  381 (428)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhc---CCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            653 44  488888888899999999999988999999875322111   233457788887777788888888776665


Q ss_pred             hc
Q 020422          181 LK  182 (326)
Q Consensus       181 ~~  182 (326)
                      ..
T Consensus       382 l~  383 (428)
T PF13347_consen  382 LA  383 (428)
T ss_pred             HH
Confidence            44

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.59  E-value=3.7e-06  Score=78.96  Aligned_cols=120  Identities=14%  Similarity=-0.022  Sum_probs=77.0

Q ss_pred             hhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHhh-------hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhh
Q 020422           73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAANL-------FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS  145 (326)
Q Consensus        73 ~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~~-------~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~  145 (326)
                      .++.++.|++.||+|+|+.+..+.++.++.....+       .++...++..-.+.+++.+...++..++..+..     
T Consensus       258 ~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----  332 (390)
T TIGR02718       258 LLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFA-----  332 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----
Confidence            34567889999999999999887655422222111       123333334445556666666665555555554     


Q ss_pred             hcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHH
Q 020422          146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT  207 (326)
Q Consensus       146 ~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~  207 (326)
                          .+++++|+.+++.+...++|..+|+.+++.+.+.     .|++. .|....++.+++.
T Consensus       333 ----~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~-----~G~~~-~f~~~~~~~l~a~  384 (390)
T TIGR02718       333 ----GDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR-----FGYAG-GFLSGTVLAVLAI  384 (390)
T ss_pred             ----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HccHH-HHHHHHHHHHHHH
Confidence                1347899999999999999999999999888653     24544 3544444444443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.59  E-value=4.7e-06  Score=79.55  Aligned_cols=104  Identities=17%  Similarity=0.042  Sum_probs=66.8

Q ss_pred             HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHH-H--hh--hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhh
Q 020422           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA-A--NL--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~-~--~~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~  144 (326)
                      .+..++.++.|+++||+|||+++..+.++..+... .  ..  .+++..+.....+.|++.+...+....++.|..    
T Consensus       285 ~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~----  360 (434)
T PRK15075        285 VSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVM----  360 (434)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHC----
Confidence            34456678899999999999998876543322111 1  11  223333333445566777766665566777775    


Q ss_pred             hhcCCCcccchhhHHHHHHHHHH-HhHHHHHHHHHHHhcC
Q 020422          145 SNHKLHEGTVIGSFNGEFWGMFA-SHQFVGNLITLAVLKD  183 (326)
Q Consensus       145 ~~~~~~~~~~rg~~~gi~~~~~~-~g~~~G~li~~~l~~~  183 (326)
                            |+++||+..|+.+.... ++..++|.+.+.+.+.
T Consensus       361 ------p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~  394 (434)
T PRK15075        361 ------PAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHV  394 (434)
T ss_pred             ------CCCccchheeHHHHHHHHHHhhhHHHHHHHHHHh
Confidence                  88999999998655444 3466788877776554

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.58  E-value=1.7e-06  Score=81.80  Aligned_cols=127  Identities=8%  Similarity=0.008  Sum_probs=96.9

Q ss_pred             hhhhHHHHHHHh-chhhHHHHHhHHHHHHHHHh-hh--hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCC
Q 020422           75 FSLVASLVVRVL-GSKNALILGTTGYWLFVAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH  150 (326)
Q Consensus        75 ~~l~~g~l~d~~-Grr~~l~~g~~~~~~~~~~~-~~--~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~  150 (326)
                      ..+++|+++||+ |+|+++..|.+++.+..+.. ..  .+...++++-++.++|.|++=+...+.+++.+++        
T Consensus        77 t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~--------  148 (498)
T COG3104          77 TPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPK--------  148 (498)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCC--------
Confidence            467899999995 99999999999998877764 33  2566777788889999999999999999998765        


Q ss_pred             cccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 020422          151 EGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (326)
Q Consensus       151 ~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~  215 (326)
                      .+.+|-..+++++.+.++|+.++|++.+.+.++     ++|.. -|....+-..++.+.+.+.++
T Consensus       149 ~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~-----~g~~~-gF~~aavGm~~gl~~f~~~~r  207 (498)
T COG3104         149 DDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN-----YGWHV-GFGLAAVGMIIGLVIFLLGRR  207 (498)
T ss_pred             CCcccCCCccEEEEEeehHHHHHHHHHHHHHHh-----hCHHH-HHHHHHHHHHHHHHHHHHccc
Confidence            444578889999999999999999998877654     35654 354444434456565555554

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.58  E-value=2.9e-06  Score=80.41  Aligned_cols=107  Identities=15%  Similarity=0.090  Sum_probs=67.9

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhh-hhHHHHHHHHHhhhhh--HHHHhhhhHHHHHHhH
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFP-SWYTMVPASLYLGFAA--SIIWVGEGTYLTAAAL  141 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~-~~~~l~~~r~l~G~g~--g~~~~~~~~~l~~~~~  141 (326)
                      +....+..+++++.|++.||+|||+.+..+.++..+..... ..+ +...++ .-.+.|++.  ....+....++.+.. 
T Consensus       273 ~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-  350 (426)
T PRK12307        273 TAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLL-GACLFGLMATNVGVGGLVPKFLYDYF-  350 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHH-HHHHHHHHHhcccHhHHHHHHHHHhC-
Confidence            33344556677889999999999999888876554433322 222 211111 222333322  122222334555554 


Q ss_pred             hhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 020422          142 SHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~  183 (326)
                               |+++||+++|+......+|..+||.+.+.+...
T Consensus       351 ---------p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~  383 (426)
T PRK12307        351 ---------PLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT  383 (426)
T ss_pred             ---------cHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence                     888999999999999999999999998877643

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.58  E-value=6.2e-06  Score=78.69  Aligned_cols=132  Identities=11%  Similarity=0.048  Sum_probs=68.7

Q ss_pred             HHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh---h--hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           69 YTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN---L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        69 ~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~---~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      .....+++++.|+++||+|||+++..+.++.++.....   .  .++....+..-.+.+...+...+....+..|.+   
T Consensus       289 ~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f---  365 (432)
T PRK10406        289 LFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMF---  365 (432)
T ss_pred             HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
Confidence            34446677888999999999998877655433322211   1  112222211112222233333333456677775   


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHH-hHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~-g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~  216 (326)
                             |++.|+.+.|+.+...+. .....|.+...+. ..     ++....++...+..+++.+..++++++
T Consensus       366 -------p~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~-----g~~~~~~~~~~~~~~i~~~~~~~l~~~  426 (432)
T PRK10406        366 -------PAQVRALGVGLSYAVANALFGGSAEYVALSLK-SI-----GMETAFFWYVTLMAVVAFLVSLMLHRK  426 (432)
T ss_pred             -------CCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-Hh-----CCCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence                   889999999998765443 2233555555432 21     222323333344444554444555543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.57  E-value=2.7e-06  Score=82.96  Aligned_cols=116  Identities=19%  Similarity=0.160  Sum_probs=85.3

Q ss_pred             CCchhHHHHHHHHHHhhhhhhH----HHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhh
Q 020422           58 GNLGTISLGILYTSFTCFSLVA----SLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGE  132 (326)
Q Consensus        58 ~~~g~~~~~~~~~~~~~~~l~~----g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~  132 (326)
                      .+.+....+++..+++++.+.+    +.+.+|+++++.+..+.+++++..+.. +.++.+..+++-++.|++.....+..
T Consensus       249 l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~  328 (524)
T PF05977_consen  249 LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSL  328 (524)
T ss_pred             hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445666666666665544    566677888888888888877766654 67888877777788888877766555


Q ss_pred             hHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 020422          133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       133 ~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~  183 (326)
                      .+.+-+.          .|++.|||.++++......+..+|.++.+.+...
T Consensus       329 ~t~~Q~~----------~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~  369 (524)
T PF05977_consen  329 NTLVQLS----------VPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH  369 (524)
T ss_pred             HHHHHHh----------CCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5444443          3899999999999999999999999998887654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR01272 gluP glucose/galactose transporter

Probab=98.56  E-value=7.8e-06  Score=74.61  Aligned_cols=108  Identities=14%  Similarity=0.057  Sum_probs=76.0

Q ss_pred             hHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHh
Q 020422           62 TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (326)
Q Consensus        62 ~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~  140 (326)
                      ....+.....+.++.+..+++.||+|+|+++.++.++..+..... ..++...++ +-.+.|++.+..+|...+...+..
T Consensus       181 ~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~~-~~~l~g~~~s~i~P~~~s~a~~~~  259 (310)
T TIGR01272       181 AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAMW-FVLALGLFNSIMFPTIFSLALNAL  259 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh
Confidence            334677777888999999999999999999888776655544433 333333332 445789999999998766665543


Q ss_pred             HhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                                 +++.+++.++. ....+|..++|.+.+.+.+
T Consensus       260 -----------~~~~~~asai~-~~~~~Gg~i~P~l~G~lad  289 (310)
T TIGR01272       260 -----------GRHTSQGSGIL-CLAIVGGAIVPLLQGSLAD  289 (310)
T ss_pred             -----------hhhhhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence                       34456777775 5666888889887777654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.55  E-value=3.7e-06  Score=78.61  Aligned_cols=170  Identities=9%  Similarity=0.018  Sum_probs=89.4

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHhhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchh---hHHHH-HhHHHHHHH
Q 020422           28 RDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSK---NALIL-GTTGYWLFV  103 (326)
Q Consensus        28 ~~~~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr---~~l~~-g~~~~~~~~  103 (326)
                      ++.+.+.+.+++....+.......+++..+.+.+..........+..+.+-.++++||..||   +.... .....++..
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~  271 (368)
T TIGR00903       192 KDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFF  271 (368)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            45566666665555555444433333322322222111112222223334457777777653   33222 222222221


Q ss_pred             HHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          104 AAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       104 ~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                      ... ...+....+..-.+.|++....++...++.+|.+          |++.||++.|+.+....+|..+++.+.+.+..
T Consensus       272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~  341 (368)
T TIGR00903       272 LALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFC----------DKELHGKAAGAIGFTSRAISVALALAAMLFIS  341 (368)
T ss_pred             HHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhc----------chhhcCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence            111 2223333333334556666666666667778876          88999999999999999999999887766652


Q ss_pred             CCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 020422          183 DDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (326)
Q Consensus       183 ~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~  215 (326)
                      .       -.. .|..+.+..+++.+...++++
T Consensus       342 ~-------~~~-~f~~~~~~~~i~~~~~~~~~~  366 (368)
T TIGR00903       342 S-------AEA-YFTFLAILITIAFAIALLLPN  366 (368)
T ss_pred             C-------HHH-HHHHHHHHHHHHHHHHHhCCC
Confidence            1       112 355555555555544444454

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.55  E-value=2.2e-06  Score=83.35  Aligned_cols=103  Identities=16%  Similarity=0.004  Sum_probs=78.0

Q ss_pred             HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh--h--hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhh
Q 020422           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN--L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS  145 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~--~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~  145 (326)
                      +...++.++.|++.||+|+|+.+..+.++.++.....  .  .++.+.....-++.|+|.|...+.......+..     
T Consensus       306 ~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~-----  380 (495)
T PRK14995        306 VASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAA-----  380 (495)
T ss_pred             HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcC-----
Confidence            4556678899999999999999888877665544322  1  234444555678999999988776666565554     


Q ss_pred             hcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       146 ~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                           |++++|.+.+++....++|..+|+.+.+.+..
T Consensus       381 -----~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        381 -----PPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             -----CHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 88899999999999999999999988776643

>TIGR00896 CynX cyanate transporter

Probab=98.54  E-value=4.5e-06  Score=77.23  Aligned_cols=109  Identities=9%  Similarity=0.013  Sum_probs=74.7

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHh-chhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           65 LGILYTSFTCFSLVASLVVRVL-GSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~-Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      .+...++..+++++.|++.||+ +||+.+..+.++.++..... +.++..... .-++.|++.+..++...+.+.+..  
T Consensus       238 ~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~--  314 (355)
T TIGR00896       238 LALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRS--  314 (355)
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhc--
Confidence            4555566778889999999999 56667666666555544433 333322222 346789999988877655554432  


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~  183 (326)
                             .+++++|...++......++..+||.+.+.+.+.
T Consensus       315 -------~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~  348 (355)
T TIGR00896       315 -------RQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI  348 (355)
T ss_pred             -------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   1456778999988888888889999888877654

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.53  E-value=1.2e-05  Score=75.49  Aligned_cols=177  Identities=10%  Similarity=0.093  Sum_probs=106.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHhH----HhhhhhhcCCCCchhHHHHHHHHHHhhhh----hhHHHHHHHhchhhHHHHHhH
Q 020422           26 YTRDVHILSCAFLLIFLAYGAA----QNLETTVNTEGNLGTISLGILYTSFTCFS----LVASLVVRVLGSKNALILGTT   97 (326)
Q Consensus        26 ~~~~~~~l~l~~~~~~~~~~~~----~~l~~~l~~~~~~g~~~~~~~~~~~~~~~----l~~g~l~d~~Grr~~l~~g~~   97 (326)
                      +.|+.+.+.+-.......|...    ...-+.+-.+.+.++...+.......+..    .+++++.+|+|.|+.++++..
T Consensus       218 k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~  297 (412)
T PF01306_consen  218 KMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGV  297 (412)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHH
Confidence            4556666555444333333322    12222333344455544444444433333    467999999999999999998


Q ss_pred             HHHH-HHHHhhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHH-HHHHHHhHHHHHH
Q 020422           98 GYWL-FVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEF-WGMFASHQFVGNL  175 (326)
Q Consensus        98 ~~~~-~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~-~~~~~~g~~~G~l  175 (326)
                      +.++ ...+.++++.+.+.+.+.+.|+-.+....+...|++++.          |++-.++...+. +...++|.++.+.
T Consensus       298 i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~f----------d~rlsAt~y~v~~~~~~~~~~~i~s~  367 (412)
T PF01306_consen  298 IMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHF----------DKRLSATLYLVGFQFAKQIGIIILSP  367 (412)
T ss_dssp             HHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----------GGGHHHHHHHHHTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8777 334457889998999999999999999999999999996          545555555552 3455666666666


Q ss_pred             HHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHH-HhccCCcc
Q 020422          176 ITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEED  218 (326)
Q Consensus       176 i~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~-~~l~~~~~  218 (326)
                      +++.+...     .|-+. .|++++.+.++..++. +.++++++
T Consensus       368 ~~G~lyd~-----~G~~~-tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  368 LAGYLYDR-----IGFQH-TYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHH-----HHHHH-HHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             hHHhhHhh-----cCcHH-HHHHHHHHHHHHHHHheeeecCCCc
Confidence            76666543     23333 3666666655544444 45555433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.53  E-value=4e-06  Score=77.45  Aligned_cols=109  Identities=11%  Similarity=-0.069  Sum_probs=67.0

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhch-hhHHH-HHhHH-HHHHHHHh-h--hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHH
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGS-KNALI-LGTTG-YWLFVAAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Gr-r~~l~-~g~~~-~~~~~~~~-~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~  138 (326)
                      .+...+...++.++.+++.||+++ |+... ..... ..+..... .  .++....+...++.|+......+....+..+
T Consensus       258 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  337 (379)
T TIGR00881       258 FTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASE  337 (379)
T ss_pred             HHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            344444556778889999998643 33222 21111 11111111 1  2344444455566676554444444455666


Q ss_pred             HhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 020422          139 AALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~  183 (326)
                      ..          |+++||++.|++.....+|..+|+.+.+.+.+.
T Consensus       338 ~~----------~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~  372 (379)
T TIGR00881       338 LA----------PKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG  372 (379)
T ss_pred             hc----------CcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh
Confidence            65          889999999999999999999999988877653

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.51  E-value=8.7e-06  Score=75.75  Aligned_cols=100  Identities=16%  Similarity=0.130  Sum_probs=56.0

Q ss_pred             HHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh----h-hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhH
Q 020422           67 ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN----L-FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (326)
Q Consensus        67 ~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~----~-~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~  141 (326)
                      ...+...++.++.+++.||+|||+++..+..+..+.....    . ..+.+...++-.+.+.+.+........++.+.  
T Consensus       238 ~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  315 (377)
T PRK11102        238 LNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDE--  315 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcc--
Confidence            3334455667889999999999999988776533322211    1 22333333333344444444444333333332  


Q ss_pred             hhhhhcCCCcccchhhHHHHHHHH-HHHhHHHHHHHH
Q 020422          142 SHASNHKLHEGTVIGSFNGEFWGM-FASHQFVGNLIT  177 (326)
Q Consensus       142 ~~~~~~~~~~~~~rg~~~gi~~~~-~~~g~~~G~li~  177 (326)
                               .|+++|+..++.... +..|..+|++++
T Consensus       316 ---------~~~~~g~~~~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        316 ---------FPHMAGTASSLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             ---------ccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence                     457899998886543 335555555443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.51  E-value=2e-06  Score=78.81  Aligned_cols=100  Identities=17%  Similarity=0.097  Sum_probs=74.7

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-h---hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L---FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~---~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~  140 (326)
                      .++......++.++.+++.||+|+|+..........+..... .   .++....+..-++.|++.+..++...+++.+..
T Consensus       249 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  328 (352)
T PF07690_consen  249 FSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELV  328 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            344444555667889999999999888877776665555443 2   223445555678899999988888777777765


Q ss_pred             HhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHH
Q 020422          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN  174 (326)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~  174 (326)
                                |+++||++.|++....++|..+||
T Consensus       329 ----------~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  329 ----------PPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             ----------HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHHHHHHHHHHHCC
Confidence                      889999999999999999988886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.49  E-value=9.8e-06  Score=76.47  Aligned_cols=129  Identities=11%  Similarity=-0.002  Sum_probs=70.7

Q ss_pred             HhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh----h-hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhh
Q 020422           72 FTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN----L-FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN  146 (326)
Q Consensus        72 ~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~----~-~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~  146 (326)
                      ..++.++++++.||+|+|+.+..+.++..+.....    . .++.+.++..-.++++..+.......+......      
T Consensus       259 ~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------  332 (402)
T PRK11902        259 TIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALC------  332 (402)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence            45677889999999999998877666544332221    2 234454444444444444433333333333333      


Q ss_pred             cCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 020422          147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (326)
Q Consensus       147 ~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~  216 (326)
                      ++..|.+    ..+++....++|..+++.+++.+...     .||+. .|.....++++++++....+.+
T Consensus       333 ~~~~~~~----~~~~~~~~~~l~~~~~~~~~G~l~~~-----~G~~~-~f~~~~~~~~~~~~~~~~~~~~  392 (402)
T PRK11902        333 NRSFSAT----QYALLSALASVGRVYVGPTSGYLVEA-----YGWPG-FYLMTVVIALPGLALLWLMRGT  392 (402)
T ss_pred             CCCCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-----hChHH-HHHHHHHHHHHHHHHHHHHhhh
Confidence            1122433    34555555567776666666666543     46765 4555555565665554444443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.48  E-value=9.1e-06  Score=75.59  Aligned_cols=100  Identities=16%  Similarity=0.215  Sum_probs=65.8

Q ss_pred             HHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hh-----hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHh
Q 020422           67 ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF-----PSWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (326)
Q Consensus        67 ~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~-----~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~  140 (326)
                      ...+...++.++.+++.||+|||+.+..+..+..+..... ..     +++..++..-.+.|++.+...+....+..+. 
T Consensus       250 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-  328 (385)
T TIGR00710       250 LNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALED-  328 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence            3334556678899999999999999888766555443322 11     2344445556778888888777665555543 


Q ss_pred             HhhhhhcCCCcccchhhHHHHHHHHHHH-hHHHHHHHH
Q 020422          141 LSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNLIT  177 (326)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~gi~~~~~~~-g~~~G~li~  177 (326)
                                .|++||++.+++...... |...+++++
T Consensus       329 ----------~~~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       329 ----------FPHVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             ----------CcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence                      346899999988766554 444455444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.48  E-value=9.1e-06  Score=75.65  Aligned_cols=158  Identities=15%  Similarity=0.054  Sum_probs=97.7

Q ss_pred             HHHHHHHHHhHHhhhhhhcCCCCchhHHHHHHHHHHh----hhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-h-hhh
Q 020422           37 FLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFT----CFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L-FPS  110 (326)
Q Consensus        37 ~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~----~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~-~~~  110 (326)
                      ++.+-..|....++.+.+.+..+.+....+.....|+    ++++++|+++|| +.|+++.....+.++..... + .++
T Consensus       221 ~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~  299 (394)
T COG2814         221 FLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGAS  299 (394)
T ss_pred             HHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcch
Confidence            3333333444456666665555555544555555554    556788999999 99999888766665544432 3 344


Q ss_pred             hHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCC
Q 020422          111 WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTS  190 (326)
Q Consensus       111 ~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~  190 (326)
                      .+...+.-++.|++.++   ....+..+.++        ..|+.++.+.++..+.+++|..+|..+++.+.++.     +
T Consensus       300 ~~~~~~~~~~wg~a~~~---~~~~~~~~~a~--------~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~-----g  363 (394)
T COG2814         300 PALALALLFLWGFAFSP---ALQGLQTRLAR--------LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL-----G  363 (394)
T ss_pred             HHHHHHHHHHHHHHhhh---hhhHHHHHhcc--------cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----c
Confidence            44444444556665554   34455565552        15688999999999999999999999998887652     4


Q ss_pred             chhHHHHHHHHHHHHHHHHHHh
Q 020422          191 GTTLLFIVFLGVITLGTILMCF  212 (326)
Q Consensus       191 wr~~~f~~~~~~~~l~~il~~~  212 (326)
                      +... .++-+.+.+++.++.+.
T Consensus       364 ~~~~-~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         364 YAAT-GWVGAALLLLALLLALL  384 (394)
T ss_pred             hHHH-HHHHHHHHHHHHHHHHH
Confidence            4442 23334444444444433

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.47  E-value=5.5e-06  Score=88.45  Aligned_cols=106  Identities=15%  Similarity=0.024  Sum_probs=82.3

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhh
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~  144 (326)
                      +...++..+++++.+++.||+++++++.++.++.++..+.. +.++.+.+++..++.|++.++..+...+++.+..    
T Consensus       276 ~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----  351 (1146)
T PRK08633        276 AASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRA----  351 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC----
Confidence            33334556677889999999999998888877666555443 4567777777789999999988888777777765    


Q ss_pred             hhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422          145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (326)
Q Consensus       145 ~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~  181 (326)
                            |+++||+++|+......+|..+++.++..+.
T Consensus       352 ------p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        352 ------PEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             ------CccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                  8899999999999988888888877766554

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.45  E-value=2.5e-05  Score=72.55  Aligned_cols=240  Identities=9%  Similarity=0.040  Sum_probs=125.6

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHH-HHHHh--hhh--hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHh
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL-FVAAN--LFP--SWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~-~~~~~--~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~  140 (326)
                      ++.-+..++-++..|.++|+.|+|+..+-......+ ++++.  ..+  +++..++.-++..++......-..+++.+..
T Consensus        65 aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~  144 (438)
T COG2270          65 AIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLT  144 (438)
T ss_pred             HHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhc
Confidence            333344466678899999999988887665544433 33332  334  3445555566777776665555666777665


Q ss_pred             HhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHH--HHhcCCC-----------CCCCCchhHHHHHHHHHHHHHH
Q 020422          141 LSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL--AVLKDDK-----------GGSTSGTTLLFIVFLGVITLGT  207 (326)
Q Consensus       141 ~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~--~l~~~~~-----------~~~~~wr~~~f~~~~~~~~l~~  207 (326)
                                ++++-||.+++-|....+|+.+-.++..  +......           +....-|...-..-....+...
T Consensus       145 ----------~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~i  214 (438)
T COG2270         145 ----------TKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFAL  214 (438)
T ss_pred             ----------CccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHh
Confidence                      6667788777777777777766554431  1111000           0111223211111111122333


Q ss_pred             HHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHH-H-HHHHHHhhHHHHHhh-hcccccccccccCcc
Q 020422          208 ILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLL-I-IPLFAYSGLQQAFVW-AEFTKEIVTPALGVS  284 (326)
Q Consensus       208 il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l-~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~  284 (326)
                      .+++..+++++.+.+..    ..-..++++...++++..+++++.. + .-+++..|....+.. +.|...  ..+++..
T Consensus       215 Pm~~~v~~~~~~~~~~~----~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~--~~gls~~  288 (438)
T COG2270         215 PMILNVHDAEKISSPPP----TALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAA--DLGLSST  288 (438)
T ss_pred             HHHhcccccccccccch----HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHH--HcCccHH
Confidence            44455555443211110    0112234433333444444454443 2 233334455544422 223221  1234445


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHH
Q 020422          285 GVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVF  321 (326)
Q Consensus       285 ~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~  321 (326)
                      +..+......+.+++|+++.|+|.||  -|++++.+.++
T Consensus       289 ~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi  327 (438)
T COG2270         289 ELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVI  327 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHH
Confidence            66777777788899999999999999  35666666554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.43  E-value=1.3e-05  Score=76.59  Aligned_cols=135  Identities=14%  Similarity=-0.065  Sum_probs=70.4

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHH---HHHHh-h--hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHH
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL---FVAAN-L--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~---~~~~~-~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~  139 (326)
                      +.......++.+..|++.||+|+++....+.....+   ..... .  ..+.+..+..-++.|.+.............+.
T Consensus       294 ~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  373 (438)
T TIGR00712       294 FLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALEL  373 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHh
Confidence            334445567788999999999754432333222111   11111 1  12333333333344443211111112233444


Q ss_pred             hHhhhhhcCCCcccchhhHHHHHHHHHHHh-HHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHH-HhccCC
Q 020422          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASH-QFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKE  216 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g-~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~-~~l~~~  216 (326)
                      .          |+++||++.|+++.....| ..+||.+.+.+....     +|.. .|.+..+..+++.+.. ++.+|+
T Consensus       374 ~----------~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~-----g~~~-~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       374 A----------PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-----GWDG-GFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             c----------ChhheeeehhhhchHHHhhhhhhcchhHHHHHHhc-----cchH-HHHHHHHHHHHHHHHHHHHHhhc
Confidence            3          8889999999998777776 467888877776532     4544 3444455455544443 445553

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.43  E-value=4.5e-06  Score=80.77  Aligned_cols=135  Identities=11%  Similarity=-0.054  Sum_probs=70.6

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhh-------HHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHH
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKN-------ALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYL  136 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~-------~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l  136 (326)
                      .++..++..++.++.|+++||+|||+       .+....++.++..... ..++....++.-++.|++.+...+...+++
T Consensus       294 ~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  373 (476)
T PLN00028        294 AASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIV  373 (476)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence            34444566778899999999999762       2222222222211221 233443333334455555444333333333


Q ss_pred             HHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCC
Q 020422          137 TAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE  216 (326)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~  216 (326)
                      .+.           .+++||.+.|+...+..+|..+++.+    ....  +..+|+.. |.+.+++.+++.++.++++.+
T Consensus       374 ~~~-----------~~~~~g~~~g~~~~~g~lg~~i~~~l----~~~~--~~~~y~~~-f~~~~~~~~i~~~~~~~~~~~  435 (476)
T PLN00028        374 PFV-----------SRRSLGVISGLTGAGGNVGAVLTQLL----FFTG--SSYSTETG-ISLMGVMIIACTLPVAFIHFP  435 (476)
T ss_pred             ccc-----------ChhhchhhhhhhhccccHHHHHHHHH----HHhc--CCccHhhH-HHHHHHHHHHHHHHHHheecc
Confidence            333           45689999998765555555555433    2211  12346553 555566666776666666544


Q ss_pred             c
Q 020422          217 E  217 (326)
Q Consensus       217 ~  217 (326)
                      .
T Consensus       436 ~  436 (476)
T PLN00028        436 Q  436 (476)
T ss_pred             c
Confidence            3

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.42  E-value=1.9e-05  Score=74.05  Aligned_cols=107  Identities=8%  Similarity=-0.110  Sum_probs=66.0

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh--hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN--LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~--~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      +...+...+++++.+++.||+|+|+.+..+..+.++.....  ..++.+.......+.+.+.....+.......+..   
T Consensus       242 ~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---  318 (382)
T PRK10091        242 MLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNA---  318 (382)
T ss_pred             HHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhC---
Confidence            33444556778899999999999999988776655544332  2344444444555666665544433222222221   


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~  183 (326)
                            .+++.++...  ......+|..+||.+++.+.+.
T Consensus       319 ------~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~  350 (382)
T PRK10091        319 ------KGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTL  350 (382)
T ss_pred             ------CcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHc
Confidence                  2444555543  3566789999999999887653

>PRK09669 putative symporter YagG; Provisional

Probab=98.41  E-value=7.6e-06  Score=78.35  Aligned_cols=107  Identities=7%  Similarity=0.002  Sum_probs=75.8

Q ss_pred             hhhhhhHHHHHHHhchhhHHHHHhHHHHHHHH-Hhh--hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCC
Q 020422           73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVA-ANL--FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL  149 (326)
Q Consensus        73 ~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~-~~~--~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~  149 (326)
                      .++.++.+++.||+|+|+.+..+.++.++... ..+  .++.+.+++..++.|++.+...+...+.++|..|.. +.  .
T Consensus       278 ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~-e~--~  354 (444)
T PRK09669        278 LFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYE-EK--R  354 (444)
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hh--h
Confidence            34557788999999999999988765554332 222  345666667778999999999998888998887421 00  0


Q ss_pred             CcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       150 ~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                      .-+++.|..+|.+.....+|..+|+.+++.+..
T Consensus       355 ~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        355 SGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             cCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            012234667788888888999999988877654

>PRK11043 putative transporter; Provisional

Probab=98.40  E-value=3e-05  Score=72.99  Aligned_cols=100  Identities=13%  Similarity=0.013  Sum_probs=66.7

Q ss_pred             HHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH-----h-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhh
Q 020422           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-----N-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (326)
Q Consensus        71 ~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~-----~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~  144 (326)
                      ...++.++.+++.||+|+|+.+....+..++....     . ..+++..++..-.+.|++.+..++...++..+.     
T Consensus       250 ~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  324 (401)
T PRK11043        250 AFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRP-----  324 (401)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----
Confidence            44566677889999999999776555443332221     1 123444455556778888888877765555443     


Q ss_pred             hhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422          145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (326)
Q Consensus       145 ~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~  181 (326)
                            .|+++|++.|++......+...++.+.+.+.
T Consensus       325 ------~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~  355 (401)
T PRK11043        325 ------FPQATGKAAALQNTLQLGLCFLASLLVSALI  355 (401)
T ss_pred             ------CcccChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence                  3568999999998877777777777666554

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.34  E-value=7.6e-06  Score=71.53  Aligned_cols=210  Identities=15%  Similarity=0.120  Sum_probs=108.6

Q ss_pred             hhhhHHHHHHHhchhhHHHHHhHHHHHHHHHhhhhhhHHHHHHHHHhhhhhHHHHhhh-hHHHHHHhHhhhhhcCCCccc
Q 020422           75 FSLVASLVVRVLGSKNALILGTTGYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGE-GTYLTAAALSHASNHKLHEGT  153 (326)
Q Consensus        75 ~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~-~~~l~~~~~~~~~~~~~~~~~  153 (326)
                      ...+.|.++||-|||+.-+.-.+-|.+..+.-..|.|..+++.|++.|++.+.+..+- .=+++|+-+            
T Consensus        88 FGtivgSLaDkqGRKracvtycitYiLsCiTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHne------------  155 (454)
T KOG4332|consen   88 FGTIVGSLADKQGRKRACVTYCITYILSCITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNE------------  155 (454)
T ss_pred             HHHHHHHHHhhhccccceeeehHHHHHHHHhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhh------------
Confidence            3456789999999999876655555444333356788999999999999999998874 445666543            


Q ss_pred             chhhHHHHHHHHHHHhHHHHH--------HHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccc
Q 020422          154 VIGSFNGEFWGMFASHQFVGN--------LITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETA  225 (326)
Q Consensus       154 ~rg~~~gi~~~~~~~g~~~G~--------li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~  225 (326)
                      +||.-.-+....++=...+|+        +.+-.+....   +.|... +|-  ++.+++++-.+..+.+..++-. +. 
T Consensus       156 kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~---slGPVA-PFd--AAacfLaigmAvil~~W~ENyg-dp-  227 (454)
T KOG4332|consen  156 KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTF---SLGPVA-PFD--AAACFLAIGMAVILSSWSENYG-DP-  227 (454)
T ss_pred             ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHh---ccCCCC-chH--HHHHHHHHHHHHHHhhhhhccC-Ch-
Confidence            344333333333332222332        2222222111   122222 232  2223333323333443222111 10 


Q ss_pred             cccchhhchHHHHHHHH-HHhhhcchhHHHHHH-HHHhhHHHHHhhhcccccccccccCcchHHHHHHHHHHHHHHHHHH
Q 020422          226 DASVNFYSYLVSLSKSI-TTLLADVRMLLIIPL-FAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAISLLG  303 (326)
Q Consensus       226 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~gi~~~~g~~~  303 (326)
                          .+++....+++.- ..+..|.+..++-.+ -.+-+..+.|.. .++|.+..+.- ..--|.++..+-++.++|+.+
T Consensus       228 ----s~~kdlltqf~gaa~aiaSD~ki~LLG~iqsLFE~smytFVF-LWTPaLspn~e-~iPhGfiFatFMlASmLGSSl  301 (454)
T KOG4332|consen  228 ----SENKDLLTQFKGAARAIASDEKIALLGAIQSLFEGSMYTFVF-LWTPALSPNDE-EIPHGFIFATFMLASMLGSSL  301 (454)
T ss_pred             ----hhhHHHHHHhhHhHHHHhcchHHHHHHHHHHHHhhhhheeee-eecccCCCCcc-cCCchhHHHHHHHHHHHhhHH
Confidence                1122333444432 235577887765332 122222222211 23444321111 112477888888899999999


Q ss_pred             hhhhhhh
Q 020422          304 FATFFSV  310 (326)
Q Consensus       304 ~G~l~Dr  310 (326)
                      ..++..|
T Consensus       302 a~Rl~s~  308 (454)
T KOG4332|consen  302 ASRLLSR  308 (454)
T ss_pred             HHHHHhc
Confidence            9888887

>TIGR00788 fbt folate/biopterin transporter

Probab=98.33  E-value=1.1e-05  Score=77.87  Aligned_cols=135  Identities=11%  Similarity=-0.000  Sum_probs=94.3

Q ss_pred             HHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh--h---------hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHH
Q 020422           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN--L---------FPSWYTMVPASLYLGFAASIIWVGEGTYLTAA  139 (326)
Q Consensus        71 ~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~--~---------~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~  139 (326)
                      +..++....+.+.+|++.|+++.++.++.++.....  +         .++.+.....-++.+++.+..+.....++.+.
T Consensus       300 ~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~  379 (468)
T TIGR00788       300 GSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARL  379 (468)
T ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHh
Confidence            334455667788899999999999888776654321  1         13333445567889999999888888888888


Q ss_pred             hHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC--CCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 020422          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--GGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~--~~~~~wr~~~f~~~~~~~~l~~il~~~l~~  215 (326)
                      .          |++++|..++++.+..++|..+|+.+++.+.+..+  .+..+.++....+..+..++...+.+++|+
T Consensus       380 ~----------p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       380 C----------PSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             C----------CCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7          88999999999999999999999998888876543  222333332222333334444444567887

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.30  E-value=3.3e-05  Score=73.97  Aligned_cols=172  Identities=12%  Similarity=-0.008  Sum_probs=90.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHhhhhhh-cCCC-CchhHH-HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHH
Q 020422           27 TRDVHILSCAFLLIFLAYGAAQNLETTV-NTEG-NLGTIS-LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (326)
Q Consensus        27 ~~~~~~l~l~~~~~~~~~~~~~~l~~~l-~~~~-~~g~~~-~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~  103 (326)
                      .++.|++++.+++.|..|...+..-+.+ .... +..... ..+..+...+..+++|+++||+|+|+++.++.+...+..
T Consensus       251 ~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~  330 (462)
T PRK15034        251 RLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFS  330 (462)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHH
Confidence            4567888888888888777665322222 2121 222111 112223456777899999999999999998887665554


Q ss_pred             HH-h-hhh-----hhHHHHHH----HHHhhhhhHHHHhhhhHHHHHHhHh-hh----------hhcCCCcccchhhHHHH
Q 020422          104 AA-N-LFP-----SWYTMVPA----SLYLGFAASIIWVGEGTYLTAAALS-HA----------SNHKLHEGTVIGSFNGE  161 (326)
Q Consensus       104 ~~-~-~~~-----~~~~l~~~----r~l~G~g~g~~~~~~~~~l~~~~~~-~~----------~~~~~~~~~~rg~~~gi  161 (326)
                      .. . ..|     +++...+.    -+..|+|.|..    ...+.+++++ +.          ..++...+++-|-..|+
T Consensus       331 ~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsv----fk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~  406 (462)
T PRK15034        331 ALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGST----FQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGF  406 (462)
T ss_pred             HHHHHHhccccccHHHHHHHHHHHHHHHhcccchHH----HHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHH
Confidence            32 1 222     33333222    23445555543    3344444421 00          00011112256778888


Q ss_pred             HHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHH
Q 020422          162 FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT  207 (326)
Q Consensus       162 ~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~  207 (326)
                      ......+|..+-|.+-+...+..+    ++ ...|..+.+..++++
T Consensus       407 v~a~G~~Ggf~~p~~~g~~~~~~g----~~-~~~~~~~~~~~~~~~  447 (462)
T PRK15034        407 ISAIGAVGGFFIPQAFGMSLNMTG----SP-VGAMKVFLIFYIVCV  447 (462)
T ss_pred             HHHHHHcccchhhHHHHHHHHHcC----Cc-HHHHHHHHHHHHHHH
Confidence            877777777776754333333221    22 333555555554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.29  E-value=1.7e-05  Score=84.84  Aligned_cols=107  Identities=15%  Similarity=-0.012  Sum_probs=79.7

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hh--------------------hhhHHHHHHHHHhhh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LF--------------------PSWYTMVPASLYLGF  123 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~--------------------~~~~~l~~~r~l~G~  123 (326)
                      .+...++..+++++.|++.|+.++++.+..+.++.+++.+.. +.                    ++.+.++++-++.|+
T Consensus       267 ~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  346 (1140)
T PRK06814        267 LAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAA  346 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHH
Confidence            444555667778889999988887776666555444433211 11                    555666677888999


Q ss_pred             hhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422          124 AASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (326)
Q Consensus       124 g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~  181 (326)
                      +.+...+...+++.+.+          |+++||+++|+.....++|..+|+++.+.+.
T Consensus       347 ~~~~~~~~~~~~~~~~~----------p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        347 AGGLYIVPLFAALQAWA----------NPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             HHHHhHHHHHHHHHhhC----------CcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988887777777765          8999999999999999999999998877664

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.29  E-value=5.2e-05  Score=71.47  Aligned_cols=105  Identities=13%  Similarity=-0.027  Sum_probs=73.1

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH-hhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhh
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~  144 (326)
                      +...++..+++++.+++.||+++|+++..+.. .++.... ...++++..+..-++.|++.+...+...+.+.+..    
T Consensus       248 ~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~----  322 (393)
T PRK11195        248 AVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRG----  322 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhC----
Confidence            33334556677888889999999988877753 3332222 23556665566677889998887766666555442    


Q ss_pred             hhcCCCcccc-hhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422          145 SNHKLHEGTV-IGSFNGEFWGMFASHQFVGNLITLAVL  181 (326)
Q Consensus       145 ~~~~~~~~~~-rg~~~gi~~~~~~~g~~~G~li~~~l~  181 (326)
                            |+++ +|+..++.+...+++..+|..+...+.
T Consensus       323 ------~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        323 ------HVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             ------cccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence                  4444 799999999999999999988876553

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.28  E-value=0.0016  Score=62.61  Aligned_cols=148  Identities=9%  Similarity=0.046  Sum_probs=86.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHhHHhhhhhhcC---CCCchhHHHHHHHH--HHhhh-hhhHHHHHHHhchhhHHHHHhH
Q 020422           24 KNYTRDVHILSCAFLLIFLAYGAAQNLETTVNT---EGNLGTISLGILYT--SFTCF-SLVASLVVRVLGSKNALILGTT   97 (326)
Q Consensus        24 ~~~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~---~~~~g~~~~~~~~~--~~~~~-~l~~g~l~d~~Grr~~l~~g~~   97 (326)
                      +.+.|.++.+.+.+++....|...-.+.+.+..   +.+...+...-.+.  ..++. .+.-+.+++|++|++.+-+-..
T Consensus         3 ~~E~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~   82 (472)
T TIGR00769         3 VHELKKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVIS   82 (472)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHH
Confidence            355677888888888888888877777766654   23333433222211  11222 4567899999999999877665


Q ss_pred             HHHHHHHHh---hhhh-----------------------------hHHHHHHHHHhhhhhHHHHh-hhhHHHHHHhHhhh
Q 020422           98 GYWLFVAAN---LFPS-----------------------------WYTMVPASLYLGFAASIIWV-GEGTYLTAAALSHA  144 (326)
Q Consensus        98 ~~~~~~~~~---~~~~-----------------------------~~~l~~~r~l~G~g~g~~~~-~~~~~l~~~~~~~~  144 (326)
                      .+..+...+   +.|+                             .|..-+..+..-+-.....+ .-.++..|+.    
T Consensus        83 ~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~----  158 (472)
T TIGR00769        83 PFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQIT----  158 (472)
T ss_pred             HHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence            554433321   1221                             11111111111111111111 1223444543    


Q ss_pred             hhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422          145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (326)
Q Consensus       145 ~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~  181 (326)
                            .++|-.|..+++..+.++|..+|+.+...+.
T Consensus       159 ------t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       159 ------TIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  7778889999999999999999987766654

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.27  E-value=1.7e-05  Score=76.60  Aligned_cols=109  Identities=10%  Similarity=-0.048  Sum_probs=74.7

Q ss_pred             HHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-h-----hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhh
Q 020422           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L-----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (326)
Q Consensus        71 ~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~-----~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~  144 (326)
                      +..++.++.+++.||+|+|+++..+.++..+..... .     .++.+.+++.-++.|++.+..++...++++|..|...
T Consensus       278 ~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e  357 (473)
T PRK10429        278 ANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGE  357 (473)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            445566788999999999999988776544333321 1     2345555666788999999999888889999874311


Q ss_pred             hhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          145 SNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       145 ~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                      ..   .-.++.|..+|.......+|..+|+.+.+.+..
T Consensus       358 ~~---tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        358 YK---LGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             Hh---cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00   011223557788777788889998888776653

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.26  E-value=0.0011  Score=62.28  Aligned_cols=218  Identities=17%  Similarity=0.156  Sum_probs=125.6

Q ss_pred             hhhhHHHHHHHhchhhHHHHHhHHHHH-HHHHhhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCccc
Q 020422           75 FSLVASLVVRVLGSKNALILGTTGYWL-FVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGT  153 (326)
Q Consensus        75 ~~l~~g~l~d~~Grr~~l~~g~~~~~~-~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~  153 (326)
                      .-++...+.|.+|.|++++++.+...+ ..+..+.++...+-+.-+.-|++.+... +-.+|+=...          |++
T Consensus        57 ~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~ev-ay~sYiys~v----------~~~  125 (412)
T PF01770_consen   57 FLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAEV-AYYSYIYSVV----------DKE  125 (412)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHH-HHHHHheeec----------CHH
Confidence            345677899999999999998876543 3333356777766677788888877532 2223332222          666


Q ss_pred             chhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccc----ccc-------
Q 020422          154 VIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK----GEK-------  222 (326)
Q Consensus       154 ~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~----~~~-------  222 (326)
                      +--++.+.--++..+|-.+|.+++..+....   ..+-+.+ ..+..+...++.++.+++|.+++.    +..       
T Consensus       126 ~yq~vts~~raa~l~g~~~s~~lgQllvs~~---~~sy~~L-~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~  201 (412)
T PF01770_consen  126 HYQKVTSYTRAATLVGRFISSLLGQLLVSFG---GVSYFQL-NYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQDAN  201 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCHHHH-HHHHHHHHHHHHHHHHHcCCCCcccceeccCccccccc
Confidence            7778888877888888888888887665421   1223332 223344455667777888876531    100       


Q ss_pred             ----cc----cccc------ch-hhch----HHHHHHHHHHhhhcchhHHHHHH--HHHhhHHHHHhhhccccccc----
Q 020422          223 ----ET----ADAS------VN-FYSY----LVSLSKSITTLLADVRMLLIIPL--FAYSGLQQAFVWAEFTKEIV----  277 (326)
Q Consensus       223 ----~~----~~~~------~~-~~~~----~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~~~~~~~~~~~~----  277 (326)
                          +.    .+.+      ++ .+..    .+...+++++..++|+++.....  +..+|..+..   .|.+.+-    
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~---nYvQ~LW~~v~  278 (412)
T PF01770_consen  202 ESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVI---NYVQSLWDTVP  278 (412)
T ss_pred             cccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHH---HHHHHHHHhcC
Confidence                00    0000      00 0111    12223455566778887765432  2334433322   2222221    


Q ss_pred             ccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          278 TPALGVSGVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       278 ~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      ..+-.....|.+-+...+.++++++..|++..+
T Consensus       279 ~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~  311 (412)
T PF01770_consen  279 PSDNESVYNGAVEAASTLLGAIAALLAGYVKVN  311 (412)
T ss_pred             CCCCCcccchHHHHHHHHHHHHHHHHHhHhhcc
Confidence            112223356888888888888999999999444

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.25  E-value=9.1e-05  Score=69.47  Aligned_cols=98  Identities=9%  Similarity=0.011  Sum_probs=54.8

Q ss_pred             HHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhc
Q 020422           69 YTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH  147 (326)
Q Consensus        69 ~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~  147 (326)
                      .....++.++.+++.||+|||+++..+.++..+..... ..++....+..-.+.+.|.+..++..  ...+..       
T Consensus       249 ~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~-------  319 (392)
T PRK10473        249 AGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVA--MSQALG-------  319 (392)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHhc-------
Confidence            33445667889999999999999998887666555443 33333332333344455544443332  112222       


Q ss_pred             CCCcccch-hhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          148 KLHEGTVI-GSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       148 ~~~~~~~r-g~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                         |.++| |.+.++    ..++..+|+.+++.+..
T Consensus       320 ---~~~~~~g~~~~~----~~~~~~~g~~~~~~l~~  348 (392)
T PRK10473        320 ---PFSLRAGVASST----LGIAQVCGSSLWIWLAA  348 (392)
T ss_pred             ---cCcccccHHHHH----HHHHHHHHHHHHHHHHH
Confidence               33344 444443    45666666666655543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.25  E-value=0.00018  Score=67.84  Aligned_cols=99  Identities=12%  Similarity=0.007  Sum_probs=67.4

Q ss_pred             hhhhhhHHHHHHHhchhhHHHHHhHHHHHH-HHH-hhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCC
Q 020422           73 TCFSLVASLVVRVLGSKNALILGTTGYWLF-VAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLH  150 (326)
Q Consensus        73 ~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~-~~~-~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~  150 (326)
                      .++.++.+++.||.+ |+.+..+..+..+. ... ...++.+.+++..++.|++.+...+...+++.+..          
T Consensus       266 iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~----------  334 (394)
T PRK10213        266 FVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSL----------  334 (394)
T ss_pred             HHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHC----------
Confidence            444567778888854 44444433333222 222 23456666667788999999888877777776653          


Q ss_pred             cccchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 020422          151 EGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       151 ~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~  183 (326)
                      | +++++..++.....++|..+|+.+++.+.+.
T Consensus       335 ~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~  366 (394)
T PRK10213        335 A-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN  366 (394)
T ss_pred             c-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4 5677888888888899999999999888753

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.25  E-value=1.5e-05  Score=75.96  Aligned_cols=130  Identities=18%  Similarity=0.247  Sum_probs=99.3

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHH-HHHHhhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhh
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWL-FVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHA  144 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~-~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~  144 (326)
                      ++.+.+=.+.-++.+.+.+|+|+-+++.+++.+... +......+|+|+.+..-+++|+.-+.+|.+..+|+++.+    
T Consensus       413 a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~va----  488 (618)
T KOG3762|consen  413 ALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVA----  488 (618)
T ss_pred             hhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhC----
Confidence            333443344456778999999999999999887766 444446789999889999999999999999999999998    


Q ss_pred             hhcCCCcccchhhHHHHHHHHH-HHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 020422          145 SNHKLHEGTVIGSFNGEFWGMF-ASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (326)
Q Consensus       145 ~~~~~~~~~~rg~~~gi~~~~~-~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~  211 (326)
                            ||+-|..+.|++...+ .+|-.+|.+|++.+....     +-|+ .|..+++.+++..+++.
T Consensus       489 ------Pp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-----g~~t-tf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  489 ------PPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-----GART-TFRIFGIACLVTLALFI  544 (618)
T ss_pred             ------CCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-----hhHH-HHHHHHHHHHHHHHHHH
Confidence                  8899999999988765 467788888888876543     4455 46666666655544443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.22  E-value=2.1e-05  Score=74.62  Aligned_cols=107  Identities=5%  Similarity=-0.301  Sum_probs=57.8

Q ss_pred             HHHHHHHhhhhhhHHHHHHHhchhhHH-HHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           66 GILYTSFTCFSLVASLVVRVLGSKNAL-ILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        66 ~~~~~~~~~~~l~~g~l~d~~Grr~~l-~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      +....+..++.++.|+++||++||+.. ....+..++..... ..++....+.+-.+.++|.....+.......      
T Consensus       286 ~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------  359 (412)
T TIGR02332       286 AIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPD------  359 (412)
T ss_pred             hHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcc------
Confidence            333445566778899999999977753 33322222221111 1222221111111222222111111111111      


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                          +..|+++|+++.|+.+....+|.++||.+.+.+..
T Consensus       360 ----~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~  394 (412)
T TIGR02332       360 ----QSISLQARAIAIAVINATGNIGSALSPFLIGILKD  394 (412)
T ss_pred             ----cccchHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence                22488899999999999999999999988766654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.22  E-value=6.6e-05  Score=72.22  Aligned_cols=137  Identities=15%  Similarity=0.081  Sum_probs=68.3

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHH--------HHHhHHH--HHHHHHh-h-hhhhHHHHHHHHHhhhhhHHHHhhh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNAL--------ILGTTGY--WLFVAAN-L-FPSWYTMVPASLYLGFAASIIWVGE  132 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l--------~~g~~~~--~~~~~~~-~-~~~~~~l~~~r~l~G~g~g~~~~~~  132 (326)
                      .++.++...++.++.|+++||+++|+..        ..+....  ++...+. . ..+....+..-.+.|.+.+...+..
T Consensus       303 ~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  382 (465)
T TIGR00894       303 SSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGV  382 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhh
Confidence            4455666678889999999998765321        1111111  1111111 1 2222222222233333333333322


Q ss_pred             hHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 020422          133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF  212 (326)
Q Consensus       133 ~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~  212 (326)
                      .....+.           .++.+|...|+......+|..++|.+.+.+.....  ..+|+. .|.+..+..+++.++..+
T Consensus       383 ~~~~~~~-----------~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~--~~~~~~-~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       383 LINSLDL-----------APRFLGFIKGITGLPGFIGGLIASTLAGNILSQDS--KNVWLI-VFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             hhchhhc-----------ChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCC--chHHHH-HHHHHHHHHHHHHHHeee
Confidence            2222222           34578999998888887777777766655433211  123544 355555555666555444


Q ss_pred             ccC
Q 020422          213 LRK  215 (326)
Q Consensus       213 l~~  215 (326)
                      +++
T Consensus       449 ~~~  451 (465)
T TIGR00894       449 FGS  451 (465)
T ss_pred             eec
Confidence            443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.21  E-value=0.00013  Score=68.58  Aligned_cols=61  Identities=10%  Similarity=0.089  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422          110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (326)
Q Consensus       110 ~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~  181 (326)
                      +.+.++....+.|++.+...+...++..+..           |+++|...+++.....+|..+|+.+++.+.
T Consensus       298 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        298 NVWTLLVPAALFFFGAGMLFPLATSGAMEPF-----------PYLAGTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------cccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4455666778999999998888877776653           467899999999888999999988876653

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.19  E-value=0.0001  Score=70.22  Aligned_cols=150  Identities=15%  Similarity=0.028  Sum_probs=94.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHhhhhhhc----CCCCchhHHHHHHHHHH-hhhhhhHHHHHHHhchhhHHHHHhHHHH
Q 020422           26 YTRDVHILSCAFLLIFLAYGAAQNLETTVN----TEGNLGTISLGILYTSF-TCFSLVASLVVRVLGSKNALILGTTGYW  100 (326)
Q Consensus        26 ~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~----~~~~~g~~~~~~~~~~~-~~~~l~~g~l~d~~Grr~~l~~g~~~~~  100 (326)
                      .-|++.++.+.+++.+.++...+.+.....    .+.++-.......+.+. .++.++.+++++|+|+|+++.++.+++.
T Consensus       234 ~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~  313 (467)
T COG2211         234 KNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLA  313 (467)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHH
Confidence            345666666667777766665554433332    12222211122222333 3346788999999999999999999888


Q ss_pred             HHHHHh-hhh--hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHH----HHHhHHHH
Q 020422          101 LFVAAN-LFP--SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGM----FASHQFVG  173 (326)
Q Consensus       101 ~~~~~~-~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~----~~~g~~~G  173 (326)
                      +..+.. +.+  +....+++.++.++|.+..++-..+.++|..| |.      +-+.--|..|+++++    .-+|.++|
T Consensus       314 i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vD-yg------e~~TG~R~eGi~~s~~tF~~K~g~ala  386 (467)
T COG2211         314 VGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVD-YG------EWKTGVRREGIVYSGMTFFRKLGLALA  386 (467)
T ss_pred             HHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhh-HH------HHHhCCCchhhHHHHHHHHHHHHHHHH
Confidence            877764 444  67788888899999999998888888888753 21      111112344444444    44667777


Q ss_pred             HHHHHHHhc
Q 020422          174 NLITLAVLK  182 (326)
Q Consensus       174 ~li~~~l~~  182 (326)
                      ..+.+.+..
T Consensus       387 ~~~~g~~L~  395 (467)
T COG2211         387 GFIPGWILG  395 (467)
T ss_pred             HHHHHHHHH
Confidence            665555544

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.16  E-value=3.9e-05  Score=71.20  Aligned_cols=166  Identities=14%  Similarity=0.092  Sum_probs=101.1

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhHHhhhhh-hcCCCCchhHH----HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHH
Q 020422           25 NYTRDVHILSCAFLLIFLAYGAAQNLETT-VNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGY   99 (326)
Q Consensus        25 ~~~~~~~~l~l~~~~~~~~~~~~~~l~~~-l~~~~~~g~~~----~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~   99 (326)
                      ...||.|.+++.+...|.+|...+...+. ++.+.+.+...    .+..-+.-++.-+.+|+++||+|.++++.......
T Consensus       215 ~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~  294 (417)
T COG2223         215 FSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGM  294 (417)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHH
Confidence            34688999999999999988877643332 23233333222    12222233556688999999999999998877766


Q ss_pred             HHHHHHh-hh-------hh----hHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHH
Q 020422          100 WLFVAAN-LF-------PS----WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFA  167 (326)
Q Consensus       100 ~~~~~~~-~~-------~~----~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~  167 (326)
                      ++..... +.       ++    ....+...+..|+|.|..    ...+..+           .+++-|...|+......
T Consensus       295 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsv----fk~Ip~i-----------f~~~~G~v~G~vga~G~  359 (417)
T COG2223         295 ALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSV----FKMIPVI-----------FPKETGAVTGIVGAIGG  359 (417)
T ss_pred             HHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchh----eeechHH-----------HHhhhhHHHHHHHHhcc
Confidence            5555432 21       22    223455677788888764    3444444           34578899999888887


Q ss_pred             HhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 020422          168 SHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM  210 (326)
Q Consensus       168 ~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~  210 (326)
                      +|..+=|..-+...+..     +-.+..|..+..+...+.++.
T Consensus       360 lGGf~lp~~~g~~~~~t-----g~~~~~f~~~~~~~~~a~v~~  397 (417)
T COG2223         360 LGGFFLPLAFGVSLDLT-----GSYTGAFMLLLAFYLVALVLT  397 (417)
T ss_pred             ccccchhHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHH
Confidence            77655554444443332     222334656666666555543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.16  E-value=2.7e-05  Score=71.17  Aligned_cols=121  Identities=17%  Similarity=0.197  Sum_probs=86.6

Q ss_pred             hhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh---hhhhhH--HHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhc
Q 020422           73 TCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN---LFPSWY--TMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH  147 (326)
Q Consensus        73 ~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~---~~~~~~--~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~  147 (326)
                      ..+.++.++++||+|||+++....++++++....   ..+|..  .+..+|++.-    ..+.+...|--|++       
T Consensus       395 fPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafis----g~fqvaYvYtPEVy-------  463 (528)
T KOG0253|consen  395 FPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS----GAFQVAYVYTPEVY-------  463 (528)
T ss_pred             CCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh----chheEEEEecCccc-------
Confidence            3456789999999999999999999998888753   344543  3335566532    23344566777776       


Q ss_pred             CCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccC
Q 020422          148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK  215 (326)
Q Consensus       148 ~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~  215 (326)
                         |...|+...|.-.++.-+|.++.|.++...  +.+      ..+...++.++.+++.+...++|-
T Consensus       464 ---PTavRatgvGtcSsmaRIggI~~p~iA~~~--e~s------~sl~i~vy~~~~ilagIavcffPi  520 (528)
T KOG0253|consen  464 ---PTAVRATGVGTCSSMARIGGIFSPVIAMRA--ELS------TSLPIFVYGALFILAGIAVCFFPI  520 (528)
T ss_pred             ---chhhhhcchhhhhhHHhhhhhhhhHHHHHh--ccc------eeehHHHHHHHHHHHHHHheeeee
Confidence               888999999998888899999999988222  211      123355778888888777777774

>PRK10133 L-fucose transporter; Provisional

Probab=98.13  E-value=0.00015  Score=69.39  Aligned_cols=105  Identities=8%  Similarity=-0.177  Sum_probs=70.2

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      ......++.++.++.+++.||+|||+++..+.++.+...... +.++... +..-.+.|++.+..+|...+...+.    
T Consensus       301 ~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~glg~~~i~P~~~s~a~~~----  375 (438)
T PRK10133        301 LTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-LIALTLCSAFMSIQYPTIFSLGIKN----  375 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHHHHHHcc----
Confidence            455556667888999999999999999888776554433332 3444332 2345788999999999877666554    


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                             .+++.+.+.++... ...|..+++.+.+.+.+
T Consensus       376 -------~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~  406 (438)
T PRK10133        376 -------LGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSD  406 (438)
T ss_pred             -------cchhhccchhHHhH-HhccchHHHHHHHHHHH
Confidence                   33456777777753 33566666666555544

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.12  E-value=6.1e-05  Score=66.29  Aligned_cols=117  Identities=18%  Similarity=0.079  Sum_probs=86.8

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH-hhhh--hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHh
Q 020422           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFP--SWYTMVPASLYLGFAASIIWVGEGTYLTAAA  140 (326)
Q Consensus        64 ~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~-~~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~  140 (326)
                      ..+.......+++++.|.+.||+|||+.+..+...+....+. .+.+  +...++..|...|++.+..++....++.+..
T Consensus        44 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  123 (338)
T COG0477          44 LLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWF  123 (338)
T ss_pred             HHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            355555666777789999999999998888877653333222 2333  4778888999999999999998889999886


Q ss_pred             HhhhhhcCCCcc-cchhhHHHHHHH-HHHHhHHHHHHHHHHHhcCCCCCCCCchh
Q 020422          141 LSHASNHKLHEG-TVIGSFNGEFWG-MFASHQFVGNLITLAVLKDDKGGSTSGTT  193 (326)
Q Consensus       141 ~~~~~~~~~~~~-~~rg~~~gi~~~-~~~~g~~~G~li~~~l~~~~~~~~~~wr~  193 (326)
                                |+ ++|+...+.... ....|..+++.++..+...   ...+||.
T Consensus       124 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  165 (338)
T COG0477         124 ----------PEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA---LLWGWRA  165 (338)
T ss_pred             ----------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHH
Confidence                      44 578998888888 5777888888776655443   2356876

>PRK11462 putative transporter; Provisional

Probab=98.09  E-value=9.3e-05  Score=71.34  Aligned_cols=109  Identities=9%  Similarity=-0.084  Sum_probs=63.8

Q ss_pred             HHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH-hhhh--hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhc
Q 020422           71 SFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFP--SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH  147 (326)
Q Consensus        71 ~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~-~~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~  147 (326)
                      ...++.+++++++||+|+|+++..+..+.++.... .+.+  +...+++.-++.|++.+...+...+.++|..|-. +..
T Consensus       275 ~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~-e~~  353 (460)
T PRK11462        275 GNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYG-EWC  353 (460)
T ss_pred             HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-HHh
Confidence            33456678899999999999877555433332222 2222  2223333446678887776666667777775321 110


Q ss_pred             CCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       148 ~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                        .-.++-|..++.......+|..+|+.+++.+..
T Consensus       354 --tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~  386 (460)
T PRK11462        354 --NGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA  386 (460)
T ss_pred             --cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              011222455566556677888888887766653

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.04  E-value=0.00018  Score=69.06  Aligned_cols=169  Identities=11%  Similarity=0.062  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHHHHhHHhhhhhhcCCCCch----hHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh
Q 020422           31 HILSCAFLLIFLAYGAAQNLETTVNTEGNLG----TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN  106 (326)
Q Consensus        31 ~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~g----~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~  106 (326)
                      +.+.+.+...+.+...+.....++..+.+..    .......-.+..++.++++.+.||+|||+.++.+..+..+....+
T Consensus       273 i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~  352 (485)
T KOG0569|consen  273 IGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLM  352 (485)
T ss_pred             HHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence            3334444445555555555555555443322    222333334456677899999999999999999887765544322


Q ss_pred             -----hhhh---hHH--HHHHHHH----hhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHH
Q 020422          107 -----LFPS---WYT--MVPASLY----LGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFV  172 (326)
Q Consensus       107 -----~~~~---~~~--l~~~r~l----~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~  172 (326)
                           +...   |..  .+++-++    -++|-|+   ...-+.+|..          |++.|..++++-...+.+...+
T Consensus       353 ~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gp---i~~fi~aELf----------~~~~R~aa~s~~~~~~w~~~fi  419 (485)
T KOG0569|consen  353 SIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGP---IPWFIGAELF----------PQSARSAAQSVATAVNWLSNFI  419 (485)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCc---hhHHHHHHhC----------CccchHHHHHHHHHHHHHHHHH
Confidence                 1111   111  1222222    2333332   2456778886          8889999888766655554443


Q ss_pred             HHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHH-HHHHHHhccCCccc
Q 020422          173 GNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL-GTILMCFLRKEEDK  219 (326)
Q Consensus       173 G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l-~~il~~~l~~~~~~  219 (326)
                      =+..-..+...     .|-  ..|+.|.+.+.+ .+.++..+||++.+
T Consensus       420 v~~~fp~l~~~-----~g~--~~filF~i~~~~~~i~~~~~lPETkgr  460 (485)
T KOG0569|consen  420 VGFAFPPLQNV-----IGP--YVFILFVIPLAIFLIYLYRYLPETKGR  460 (485)
T ss_pred             HHHHHHHHHHH-----hcc--hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence            22222222221     122  236666666654 44556789998753

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.00  E-value=0.00049  Score=65.29  Aligned_cols=105  Identities=5%  Similarity=-0.135  Sum_probs=71.7

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      .+.....+.++.+.++++.||+++|+++.+..++..+..+.. ..++...+ .+-++.|+..++.||+..+...+..   
T Consensus       275 ~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~-~~l~~~glf~s~~fp~i~sl~~~~~---  350 (410)
T TIGR00885       275 NIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGL-YCLTLCSAFMSLMFPTIYGIALKGL---  350 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHHHHHHHHHHhhh---
Confidence            444556778899999999999999999887776655554443 44454443 3557889999999998777666654   


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                             +++ ...+.+... +..+|..++|.+.+.+..
T Consensus       351 -------g~~-~~~~s~~l~-~~~~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       351 -------GQD-TKYGAAGLV-MAIIGGGIVPPLQGFIID  380 (410)
T ss_pred             -------hhh-hhhhHHHHH-HHHhccchHHHHHHHHHH
Confidence                   322 223233222 234888999988888765

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.98  E-value=0.0006  Score=66.00  Aligned_cols=62  Identities=18%  Similarity=0.154  Sum_probs=54.8

Q ss_pred             hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 020422          109 PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (326)
Q Consensus       109 ~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l  180 (326)
                      .|++.+++..++.|+|+....|...+++++.+          |++.||+.+|++.....+|..+|+.+....
T Consensus       379 ~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~a----------P~~~~g~~~g~~~l~~~~g~~l~~~~~~~~  440 (475)
T TIGR00924       379 TSPWFMVLIYLFQTLGELMISPLGLSWWTKIA----------PQRLMGQMLGMWFLAQAMGSLLGGYLATFG  440 (475)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47777888999999999999999999999987          889999999999988889888888776554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.97  E-value=0.00013  Score=71.09  Aligned_cols=91  Identities=8%  Similarity=-0.030  Sum_probs=67.5

Q ss_pred             hHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhh---------hHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhc
Q 020422           78 VASLVVRVLGSKNALILGTTGYWLFVAAN-LFPS---------WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH  147 (326)
Q Consensus        78 ~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~---------~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~  147 (326)
                      ..+++.||+++++.+.+|.++.++..... ..++         .+.+++..+++|+|+....|...+++.+.+       
T Consensus       339 ~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~a-------  411 (500)
T PRK09584        339 IYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLV-------  411 (500)
T ss_pred             HHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC-------
Confidence            33566666667777888887766654332 2222         345667899999999999999999998887       


Q ss_pred             CCCcccchhhHHHHHHHHHHHhHHHHHHHHH
Q 020422          148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITL  178 (326)
Q Consensus       148 ~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~  178 (326)
                         |++.||+.+|++.....+|..+++.+..
T Consensus       412 ---P~~~rg~~~g~~~l~~a~g~~~~g~~~~  439 (500)
T PRK09584        412 ---PQRLMGFIMGSWFLTTAGAALIAGYVAN  439 (500)
T ss_pred             ---cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               8899999999987777777777665543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.95  E-value=0.00065  Score=59.76  Aligned_cols=95  Identities=14%  Similarity=0.046  Sum_probs=63.5

Q ss_pred             hhhHHHHHHHhchhhHHHHHhHHHHHHH-HHh------hh-hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhc
Q 020422           76 SLVASLVVRVLGSKNALILGTTGYWLFV-AAN------LF-PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH  147 (326)
Q Consensus        76 ~l~~g~l~d~~Grr~~l~~g~~~~~~~~-~~~------~~-~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~  147 (326)
                      .++.|.+.|++|++.++.+|.+...+.- ...      .. ++++.+.+.-.+.|.+.+..-+++.....++        
T Consensus        53 G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~N--------  124 (250)
T PF06813_consen   53 GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRN--------  124 (250)
T ss_pred             cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHh--------
Confidence            5889999999999999998887543322 111      11 3566666666777777665555544444455        


Q ss_pred             CCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422          148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (326)
Q Consensus       148 ~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~  181 (326)
                         .|++||.+.|+.-....++..+=..+-..+.
T Consensus       125 ---FP~~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen  125 ---FPRSRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             ---CccccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence               3568999999998888877666544444443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.92  E-value=0.0003  Score=65.57  Aligned_cols=169  Identities=12%  Similarity=0.023  Sum_probs=95.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHhhhhhhc-CCCCchh----HHHHHHHHHHhhhhhhHHHHHHHh--chhhHHHHHh-HH
Q 020422           27 TRDVHILSCAFLLIFLAYGAAQNLETTVN-TEGNLGT----ISLGILYTSFTCFSLVASLVVRVL--GSKNALILGT-TG   98 (326)
Q Consensus        27 ~~~~~~l~l~~~~~~~~~~~~~~l~~~l~-~~~~~g~----~~~~~~~~~~~~~~l~~g~l~d~~--Grr~~l~~g~-~~   98 (326)
                      -|.+|.++++.++++..+..+..-.+... +..+.+.    .+.+++=.+--.+.+++|+++||+  |||....+.. ++
T Consensus       251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~  330 (448)
T COG2271         251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL  330 (448)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence            35688899999999988887764333222 2233332    333333344456778999999997  5666655433 32


Q ss_pred             HHHHHHHh-hhh--hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHH-hHHHHH
Q 020422           99 YWLFVAAN-LFP--SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGN  174 (326)
Q Consensus        99 ~~~~~~~~-~~~--~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~-g~~~G~  174 (326)
                      ..+..+.. .+|  |+.+...+-...|+..-+-.--.+....|          ..|++.-|.+.|+......+ |.+.+.
T Consensus       331 i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e----------~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~  400 (448)
T COG2271         331 ITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQMLIGLAAAE----------FVPKKAAGTATGFVGLFAYLIGAALAG  400 (448)
T ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHhc----------cccHhhccchhchhhhHHHHhhHHhcC
Confidence            22232332 444  44666666666676654422222222333          34888889999987554444 444444


Q ss_pred             HHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 020422          175 LITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (326)
Q Consensus       175 li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~  211 (326)
                      ...+.+.+     ..+|-. .|+++.+.+++++++..
T Consensus       401 ~~~g~i~d-----~~gW~g-~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         401 LPLGYIAD-----TWGWDG-GFIVLSIAALLAILLLL  431 (448)
T ss_pred             CcceeeEe-----cCCCcc-hHHHHHHHHHHHHHHHH
Confidence            43333322     257865 46666666666655443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.90  E-value=0.00053  Score=66.16  Aligned_cols=185  Identities=16%  Similarity=0.041  Sum_probs=106.7

Q ss_pred             CccccchhHHHHHHHHHHHHHHHHhHH-----hhhhhh-cCCC------C----chhHHHHHHHHHHhhhhhhHHHHHHH
Q 020422           22 TPKNYTRDVHILSCAFLLIFLAYGAAQ-----NLETTV-NTEG------N----LGTISLGILYTSFTCFSLVASLVVRV   85 (326)
Q Consensus        22 ~~~~~~~~~~~l~l~~~~~~~~~~~~~-----~l~~~l-~~~~------~----~g~~~~~~~~~~~~~~~l~~g~l~d~   85 (326)
                      +.++..|.++.+++..++...++.+..     .+.+++ +.++      +    .|........+...+.+++.+++.+|
T Consensus       252 ~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~  331 (477)
T TIGR01301       252 AFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRG  331 (477)
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677778888877666555544332     222222 2111      1    13333333333334667788999999


Q ss_pred             hch-hhHHHHHhHHHHHHHHHh-hhhh---------------------hHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           86 LGS-KNALILGTTGYWLFVAAN-LFPS---------------------WYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        86 ~Gr-r~~l~~g~~~~~~~~~~~-~~~~---------------------~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      +|+ |++...+.++.++..+.. +.++                     -+..++.-.+.|+.-+.......+.+++..++
T Consensus       332 ~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~  411 (477)
T TIGR01301       332 WGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSN  411 (477)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccc
Confidence            995 677688876665544432 2221                     14444556788888888777777777776511


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHH-HHhccCCcc
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEED  218 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il-~~~l~~~~~  218 (326)
                              ..++.|..+|+++....+.+++..+..+.+....++   +... .+.+-++..+++.++ .+.+|++++
T Consensus       412 --------~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~---~~~~-~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       412 --------LGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG---GNLP-AFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             --------cCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC---CCee-HHHHHHHHHHHHHHHHHHhCCCCCC
Confidence                    134569999999999999988888766654433221   1122 233334444555444 456777643

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.82  E-value=0.00038  Score=67.82  Aligned_cols=171  Identities=14%  Similarity=0.075  Sum_probs=110.0

Q ss_pred             hHHHHHHHHHHHHHHHHhHHhhhhhhc----CCCCchhHHHHHHHHHHhhhhhhHHHHHHHhc--hhhHHHHHhHHHHHH
Q 020422           29 DVHILSCAFLLIFLAYGAAQNLETTVN----TEGNLGTISLGILYTSFTCFSLVASLVVRVLG--SKNALILGTTGYWLF  102 (326)
Q Consensus        29 ~~~~l~l~~~~~~~~~~~~~~l~~~l~----~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~G--rr~~l~~g~~~~~~~  102 (326)
                      -.+.+.++..+...++.......++..    .+.......+++.-++-.++.+..|+++|+..  ++.+..++.++.++.
T Consensus       299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~  378 (509)
T KOG2504|consen  299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLA  378 (509)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHH
Confidence            344555555555555554433333332    22222333355555566777889999999999  444445555555555


Q ss_pred             HHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422          103 VAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (326)
Q Consensus       103 ~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~  181 (326)
                      .+.. +.+++..++...++.|+..|....-....+.++.          ..++-..+.|+......++..+||.+++.+.
T Consensus       379 ~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~----------g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~  448 (509)
T KOG2504|consen  379 RLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLV----------GLEKLSNAYGLLLLFQGIGALVGPPIAGLLY  448 (509)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------ChhhcchHHHHHHHHhHHHHHcCcccceeee
Confidence            5433 6788999999999999999988776655666665          7788899999999999999999999987554


Q ss_pred             cCCCCCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 020422          182 KDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR  214 (326)
Q Consensus       182 ~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~  214 (326)
                      ...+    ++... |.....+.+++.++.+..+
T Consensus       449 d~tg----~Y~~~-f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  449 DITG----NYDHA-FYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eccC----Ceeee-hhhcChHHHHHHHHHHHhH
Confidence            3322    23222 3334444555555555555

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.60  E-value=0.0004  Score=64.13  Aligned_cols=87  Identities=11%  Similarity=0.020  Sum_probs=51.7

Q ss_pred             HHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-h--hh--hhHH----HHHHHHHhhhhhHHHHhhhhHHHHH
Q 020422           68 LYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L--FP--SWYT----MVPASLYLGFAASIIWVGEGTYLTA  138 (326)
Q Consensus        68 ~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~--~~--~~~~----l~~~r~l~G~g~g~~~~~~~~~l~~  138 (326)
                      ......++.++.|++.||+|||+.+..+........... +  .+  +...    ++...+..|++.+..+    .++.+
T Consensus       270 ~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~  345 (366)
T TIGR00886       270 GGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTF----ALVPH  345 (366)
T ss_pred             HHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhh----hcchh
Confidence            333445677889999999999988777665443333221 1  21  3332    2333445555555444    34444


Q ss_pred             HhHhhhhhcCCCcccchhhHHHHHHHHHHHh
Q 020422          139 AALSHASNHKLHEGTVIGSFNGEFWGMFASH  169 (326)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g  169 (326)
                      .           .++++|+..|++....++|
T Consensus       346 ~-----------~~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       346 I-----------FRRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             h-----------chhhcccHHHHHHHhccCC
Confidence            4           3468999999887665544

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=97.57  E-value=0.087  Score=51.11  Aligned_cols=148  Identities=14%  Similarity=0.115  Sum_probs=80.4

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhHHhhhhhhcCC-CCchhHHHHHHHHHHhhh---hhhHHHHHHHhchhhHHHHHhHHHH
Q 020422           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGTISLGILYTSFTCF---SLVASLVVRVLGSKNALILGTTGYW  100 (326)
Q Consensus        25 ~~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~~-~~~g~~~~~~~~~~~~~~---~l~~g~l~d~~Grr~~l~~g~~~~~  100 (326)
                      .++|.++.+++.++++...|...-.+-+.+-.+ .+...+...=.+.+.-.+   -..-..+.++++|.+++-+..+.+.
T Consensus        21 ~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~  100 (491)
T PF03219_consen   21 SELKKFLPLALMFFFILFNYTILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFL  100 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            577888888888888877777666555544433 333333322223322222   2345789999999998876665544


Q ss_pred             HHHHH--h-hhhh-------hH-HHHHHHHHhhhhh----HHHHhh------------------hhHHHHHHhHhhhhhc
Q 020422          101 LFVAA--N-LFPS-------WY-TMVPASLYLGFAA----SIIWVG------------------EGTYLTAAALSHASNH  147 (326)
Q Consensus       101 ~~~~~--~-~~~~-------~~-~l~~~r~l~G~g~----g~~~~~------------------~~~~l~~~~~~~~~~~  147 (326)
                      .+.+.  . +.|+       .. .-...+...|+..    ---|+.                  -.++..++        
T Consensus       101 ~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~i--------  172 (491)
T PF03219_consen  101 GFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEI--------  172 (491)
T ss_pred             HHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence            43322  1 2322       10 0000001111110    001111                  11222333        


Q ss_pred             CCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       148 ~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                        .+.+|-.|..+++..+.++|.++++.+.....+
T Consensus       173 --tt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  173 --TTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              367788899999999999999988777655554

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.57  E-value=0.0013  Score=63.98  Aligned_cols=98  Identities=17%  Similarity=0.107  Sum_probs=73.7

Q ss_pred             hhhhhhHHHHHHHhchhhH-------HHHHhHHHHHHHH-------Hhh----hhhhHHHHHHHHHhhhhhHHHHhhhhH
Q 020422           73 TCFSLVASLVVRVLGSKNA-------LILGTTGYWLFVA-------ANL----FPSWYTMVPASLYLGFAASIIWVGEGT  134 (326)
Q Consensus        73 ~~~~l~~g~l~d~~Grr~~-------l~~g~~~~~~~~~-------~~~----~~~~~~l~~~r~l~G~g~g~~~~~~~~  134 (326)
                      .+.+++.+++.||+|+|+.       +.+|.++.++..+       ...    ..+.+.++..-++.|+|++...+...+
T Consensus       323 ii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~  402 (489)
T PRK10207        323 VVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLA  402 (489)
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3566778899999999973       5566554433221       111    124555667889999999999998888


Q ss_pred             HHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 020422          135 YLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (326)
Q Consensus       135 ~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l  180 (326)
                      ++.+.+          |++.+|..+|+++...++|..+|..++...
T Consensus       403 ~~~~~a----------P~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        403 MIAALV----------PQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHhC----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888876          889999999999999999999988877544

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.53  E-value=0.0033  Score=57.96  Aligned_cols=69  Identities=16%  Similarity=0.201  Sum_probs=42.5

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhHHhhhhhhcCCCCchhHHHHHHHHHHhhhh--hhHHHHHH-----HhchhhHHHH
Q 020422           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFTCFS--LVASLVVR-----VLGSKNALIL   94 (326)
Q Consensus        25 ~~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~~~~--l~~g~l~d-----~~Grr~~l~~   94 (326)
                      ...+++..+...++..-..+..+. ..+-+....+.+..+.+++-..+...+  +...+++|     |+|||+..++
T Consensus        28 ~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvv  103 (510)
T KOG3574|consen   28 GDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVV  103 (510)
T ss_pred             hhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceee
Confidence            455666666555555543333333 334444456777766666666555444  57788998     9999998654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.48  E-value=0.0074  Score=59.01  Aligned_cols=129  Identities=15%  Similarity=0.022  Sum_probs=84.9

Q ss_pred             hhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhh--hh-HHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCC
Q 020422           74 CFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFP--SW-YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL  149 (326)
Q Consensus        74 ~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~--~~-~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~  149 (326)
                      .+....+...|++|||.....+..+..++.+.. ..+  .. ........+...+.+..+.....+.+|..         
T Consensus       365 p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~---------  435 (521)
T KOG0255|consen  365 PAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELI---------  435 (521)
T ss_pred             hHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------
Confidence            334455789999999999999998776666543 322  22 12334456666666666666677778876         


Q ss_pred             CcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHH-HHhccCCccc
Q 020422          150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDK  219 (326)
Q Consensus       150 ~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il-~~~l~~~~~~  219 (326)
                       |...|+.+.+.......+|.++++.+.......       +....+..+.....+..++ .+++||+...
T Consensus       436 -pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~lpet~~~  498 (521)
T KOG0255|consen  436 -PTVVRNTAVGAISAAARLGSILAPLFPLLLRQM-------FPLLGLILFGWLALLLGLLSLLLLPETKGK  498 (521)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------cccchHHHHHHHHHHHHHHHHhcCcccCCC
Confidence             888999999999988889988888876544331       1121222344444444434 4889997654

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.44  E-value=0.00025  Score=66.68  Aligned_cols=134  Identities=13%  Similarity=0.051  Sum_probs=85.7

Q ss_pred             hhhhHHHHHHHhchhhHHHHHhHHHHHHHHH-hhhhh----hHHHHHHHHHhhhhhHHH-HhhhhHHHHHHhHhhhhhcC
Q 020422           75 FSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPS----WYTMVPASLYLGFAASII-WVGEGTYLTAAALSHASNHK  148 (326)
Q Consensus        75 ~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~-~~~~~----~~~l~~~r~l~G~g~g~~-~~~~~~~l~~~~~~~~~~~~  148 (326)
                      +-++...++|+.|||++.+-|.+++.++... ....|    -..+++...+..+....- -.+...+.+|++        
T Consensus       364 Gyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~F--------  435 (538)
T KOG0252|consen  364 GYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIF--------  435 (538)
T ss_pred             ceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhc--------
Confidence            4456778999999999999999988776553 22222    223333333433333221 123455667776        


Q ss_pred             CCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccc
Q 020422          149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK  219 (326)
Q Consensus       149 ~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~  219 (326)
                        |..-||..-|+-.+..-.|.++|...-..+.++......+-|+ .++++.++.+++.+.-+++||++.+
T Consensus       436 --ParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~-v~~i~~~~~~~gi~~T~l~pEtk~~  503 (538)
T KOG0252|consen  436 --PARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRN-VFIILAGCMLLGILFTLLIPETKGK  503 (538)
T ss_pred             --hHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchH-HHHHHHHHHHHhHheeEEeeccccc
Confidence              8889999999988888888888865544443321111122333 4777888888888888889987653

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=97.38  E-value=0.036  Score=55.76  Aligned_cols=131  Identities=12%  Similarity=0.033  Sum_probs=82.6

Q ss_pred             hhhhhhHHHHHH-HhchhhHHHHHhHHHHHHHHHh-hh--h------hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           73 TCFSLVASLVVR-VLGSKNALILGTTGYWLFVAAN-LF--P------SWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        73 ~~~~l~~g~l~d-~~Grr~~l~~g~~~~~~~~~~~-~~--~------~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      -+.++++|.++| ++||+++++++.+++.+..+.. +.  +      .....+.+=++..+|.|+.=++..+...+-.++
T Consensus        37 yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~  116 (654)
T TIGR00926        37 YLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE  116 (654)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc
Confidence            344567788886 5899999999988876654432 21  1      112234455778888888888877777776521


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCC--CCCCchhHHHHHHHHHHHHHHHHHH
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG--GSTSGTTLLFIVFLGVITLGTILMC  211 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~--~~~~wr~~~f~~~~~~~~l~~il~~  211 (326)
                             ..+++|.+.+.+++.+.++|+.+++.+...+......  ...+|.. .|.+.+++.+++.+++.
T Consensus       117 -------~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~-aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       117 -------RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPL-AFGVPAILMILALIVFM  179 (654)
T ss_pred             -------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHH-HHHHHHHHHHHHHHHHH
Confidence                   0233577889999999999999998887666432210  0135644 35555555555554443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.30  E-value=1.7e-06  Score=82.78  Aligned_cols=132  Identities=17%  Similarity=0.120  Sum_probs=72.7

Q ss_pred             HhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-----hhh------hhHHHHHHHHHhhhhhHHHH-hhhhHHHHHH
Q 020422           72 FTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-----LFP------SWYTMVPASLYLGFAASIIW-VGEGTYLTAA  139 (326)
Q Consensus        72 ~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-----~~~------~~~~l~~~r~l~G~g~g~~~-~~~~~~l~~~  139 (326)
                      ..++.+.+..+.||+|||+.++.+..+.++.....     ..+      ++..+... .+.....+..+ +....+..|.
T Consensus       299 ~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~l~~~~~~~g~~~~~~~~~~El  377 (451)
T PF00083_consen  299 NFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFL-ALFFAFFSLGWGPLPWIYTAEL  377 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccceee-eecccccccccccccccccccc
Confidence            34455667799999999999988877654433211     111      12222111 11212222112 2334666777


Q ss_pred             hHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHH-HHHHhccCCcc
Q 020422          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGT-ILMCFLRKEED  218 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~-il~~~l~~~~~  218 (326)
                      .          |.+.|++..|+......++..+++.+...+....    ..+.  .+.++.++.+++. +..+++||++.
T Consensus       378 f----------Pt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~----~~~~--~~~i~~~~~~i~~i~~~~~lpET~g  441 (451)
T PF00083_consen  378 F----------PTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL----GGWG--VFLIFAGVCLIAIIFVYFFLPETKG  441 (451)
T ss_pred             c----------cccccccccccccccccccccccccccccccccc----cccc--cchhhHHHHHHHHhheeEEEeeCCC
Confidence            6          8899999999887666666666554433332211    0122  2555565555544 34577899876


Q ss_pred             cc
Q 020422          219 KG  220 (326)
Q Consensus       219 ~~  220 (326)
                      +.
T Consensus       442 ~~  443 (451)
T PF00083_consen  442 KT  443 (451)
T ss_pred             CC
Confidence            43

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.30  E-value=0.031  Score=51.45  Aligned_cols=115  Identities=13%  Similarity=0.086  Sum_probs=75.9

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhc-hhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLG-SKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~G-rr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      .++.-......++..+.+++|.. +|+..+....++.+....+ +.|....+. .-++.|+|.|...+.+.+.+.+.+  
T Consensus       249 lsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~l-w~~llG~G~G~~F~laL~li~~rs--  325 (395)
T COG2807         249 LSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPIL-WALLLGLGQGGAFPLALTLILLRS--  325 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHhCccchHHHHHHHHHHhhc--
Confidence            34444555667778888888655 5666565555555555544 555332222 248999999999998887777665  


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchh
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTT  193 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~  193 (326)
                             .++++-++-.|+-+....+=..+||.+.+.+-...    .+|..
T Consensus       326 -------~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~----gsw~~  365 (395)
T COG2807         326 -------SDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT----GSWSA  365 (395)
T ss_pred             -------CChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc----CChHH
Confidence                   25666778888877666666677888877775432    46765

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.22  E-value=0.019  Score=54.47  Aligned_cols=63  Identities=11%  Similarity=0.033  Sum_probs=42.1

Q ss_pred             hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 020422          110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       110 ~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~  183 (326)
                      ++...+..-++.|+|.+...+...+..  +.+         ++..+|++.+++......+...|+..++.+...
T Consensus       311 ~~~~~~~~~~l~~~G~~~~~p~~~~~a--l~~---------~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~  373 (413)
T PRK15403        311 VWLWSVLGTSLYAFGIGLIFPTLFRFT--LFS---------NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN  373 (413)
T ss_pred             cHHHHHHHHHHHHHHHHHHhHHHHHHH--hcc---------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            343345677888999988777654322  111         334579999998888877888888877766543

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.01  E-value=0.0083  Score=58.67  Aligned_cols=43  Identities=23%  Similarity=0.281  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHH
Q 020422           62 TISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA  104 (326)
Q Consensus        62 ~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~  104 (326)
                      .....+...+..++..++..+.||+|||+.++.|.+.+.+..+
T Consensus       332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~  374 (513)
T KOG0254|consen  332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLV  374 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Confidence            3334444455566777789999999999999999987766544

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.00  E-value=0.019  Score=56.85  Aligned_cols=100  Identities=16%  Similarity=0.071  Sum_probs=63.3

Q ss_pred             HHhhhhhhHHHHHHHhchh-hHHHHHhHHHHHHHHHh--h-hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhh
Q 020422           71 SFTCFSLVASLVVRVLGSK-NALILGTTGYWLFVAAN--L-FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASN  146 (326)
Q Consensus        71 ~~~~~~l~~g~l~d~~Grr-~~l~~g~~~~~~~~~~~--~-~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~  146 (326)
                      +..+++++.|.+..+++|- +.++.+.++..++..++  . .+|....+..-++.|++.|...........-.       
T Consensus       361 g~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~-------  433 (599)
T PF06609_consen  361 GSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLI-------  433 (599)
T ss_pred             HHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEee-------
Confidence            3455667788888887754 44456665555444333  2 23433444556788888876544333222222       


Q ss_pred             cCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 020422          147 HKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (326)
Q Consensus       147 ~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l  180 (326)
                         .|++..|.++|+..+...+|+.+|..+-..+
T Consensus       434 ---~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I  464 (599)
T PF06609_consen  434 ---VPDEDIGTATGLTGSIRSIGGSIGYAIYNAI  464 (599)
T ss_pred             ---eCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence               3778899999999999999998887665443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.93  E-value=0.022  Score=55.00  Aligned_cols=175  Identities=13%  Similarity=0.134  Sum_probs=93.4

Q ss_pred             ccCccccchhHHHHHHH--HHHHHHHHHhHH-----hhhhhhcCC-CCchhHHHHHHHHHHhhhhhhHHHHHHHhchh--
Q 020422           20 VLTPKNYTRDVHILSCA--FLLIFLAYGAAQ-----NLETTVNTE-GNLGTISLGILYTSFTCFSLVASLVVRVLGSK--   89 (326)
Q Consensus        20 ~~~~~~~~~~~~~l~l~--~~~~~~~~~~~~-----~l~~~l~~~-~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr--   89 (326)
                      +.||++..++.-+.++.  .++-..++....     .+.+.++.+ .+.|.. .++-++...+..+++|.++||.-+|  
T Consensus       248 ~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~-salP~l~~~~~k~~~g~lsD~l~~~~l  326 (466)
T KOG2532|consen  248 PVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFL-SALPFLAMAIVKFVAGQLSDRLTFRIL  326 (466)
T ss_pred             CCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHH-HHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            45787655554444443  333333333222     333333334 223333 4677788888899999999999773  


Q ss_pred             ------hHH-HHHhHHHHHHHHHh-hhh---hhHHH---HHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccch
Q 020422           90 ------NAL-ILGTTGYWLFVAAN-LFP---SWYTM---VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVI  155 (326)
Q Consensus        90 ------~~l-~~g~~~~~~~~~~~-~~~---~~~~l---~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~r  155 (326)
                            +.+ .++..+-+++.++. +.+   .+..+   ..+-.+.|+..+++..+    ..+.           .|+.-
T Consensus       327 s~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~-----------apq~a  391 (466)
T KOG2532|consen  327 SETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKN----HQDI-----------APQHA  391 (466)
T ss_pred             chHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhh----hhhc-----------cchHH
Confidence                  111 12223333333322 222   21111   12223333333332221    1111           34566


Q ss_pred             hhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhc
Q 020422          156 GSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFL  213 (326)
Q Consensus       156 g~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l  213 (326)
                      +..+|+.+....+..+++|.+.+.+.++.  ....|+. .|.+.+++.+++.+++.++
T Consensus       392 ~~l~g~~~~~~~~~~~~~P~~vg~~~~~~--t~~eW~~-VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  392 GFVMGIINFVGALAGFIAPLLVGIIVTDN--TREEWRI-VFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheeeEeCCC--CHHHHHH-HHHHHHHHHHHhchheeEe
Confidence            88999999999999999998887776521  2357877 4666666666666555544

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.87  E-value=0.038  Score=51.99  Aligned_cols=64  Identities=13%  Similarity=0.079  Sum_probs=50.8

Q ss_pred             hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 020422          107 LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (326)
Q Consensus       107 ~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l  180 (326)
                      +.|+.+.+++.-+..|+-.|..+......+.+-          .++++|..++|....+-+.|..++++++..+
T Consensus       331 fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~~----------~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  331 FIPSIWIVFVLIFYEGLLGGASYVNTFYRISEE----------VPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            467888777777899999999888766555443          2788999999999888888888888887554

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.81  E-value=0.011  Score=55.06  Aligned_cols=109  Identities=13%  Similarity=-0.012  Sum_probs=75.6

Q ss_pred             HHHhhhhhhHHHHHHHhc--hhhHHHH-HhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhh
Q 020422           70 TSFTCFSLVASLVVRVLG--SKNALIL-GTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHAS  145 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~G--rr~~l~~-g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~  145 (326)
                      +.++++..+.|.+.||++  | |.+.. +.+..+...... +.+++..+++-+...|++.+..-.+-.-.+....|.+. 
T Consensus       317 ~~y~ig~~lfg~la~k~~~~~-wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh-  394 (464)
T KOG3764|consen  317 LSYAIGTNLFGKLADKYPHLR-WLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRH-  394 (464)
T ss_pred             cchhccCchHHHHHHhcCchh-HHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhh-
Confidence            456788899999999999  5 44333 444444333333 67889999988888888888766553333333332211 


Q ss_pred             hcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 020422          146 NHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       146 ~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~  183 (326)
                         ....+.-|...+++..++.+|..+||.+++.+.+.
T Consensus       395 ---~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~  429 (464)
T KOG3764|consen  395 ---VSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA  429 (464)
T ss_pred             ---ccccceeeeHHHHHHHHHHHhhhccccccchheee
Confidence               11222568899999999999999999999888764

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.34  E-value=0.024  Score=52.96  Aligned_cols=110  Identities=12%  Similarity=0.001  Sum_probs=75.0

Q ss_pred             hHHHHHhHHHHHHHHHh----hhhh------hHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHH
Q 020422           90 NALILGTTGYWLFVAAN----LFPS------WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFN  159 (326)
Q Consensus        90 ~~l~~g~~~~~~~~~~~----~~~~------~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~  159 (326)
                      |++++|.+++.++.+..    ..++      ...++++-.+.++|.|++=++...+.+|-++++       .+++|.+.+
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~-------~~~~~~~~F   74 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDED-------DDSRRDSFF   74 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTT-------TTTHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhccc-------chhhhhhhH
Confidence            45666777666655441    1112      246777788999999999999888888887542       257888999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 020422          160 GEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF  212 (326)
Q Consensus       160 gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~  212 (326)
                      .+|+.+.++|..++..+...+.++     .+|.. .|.+..+..+++.+.+..
T Consensus        75 ~~fY~~in~G~~~~~~~~~~i~~~-----~~~~~-~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   75 NWFYWGINIGSLFSPTLVPYIQQN-----YGWFL-GFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHC-----S-HHH-HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhhhhHhhcccchhhccc-----cchhh-hhhHHHHHHHHHHHHHHh
Confidence            999999999999998887777543     46654 355544445555554443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.22  E-value=0.026  Score=40.10  Aligned_cols=42  Identities=12%  Similarity=-0.011  Sum_probs=33.8

Q ss_pred             ccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHH
Q 020422          278 TPALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPL  319 (326)
Q Consensus       278 ~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~  319 (326)
                      +.+++..++|.+..+..+...+++.+.|.++||  |++.+..+.
T Consensus        29 ~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~   72 (77)
T PF12832_consen   29 QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGS   72 (77)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHH
Confidence            456777899999999999999999999999999  444444433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.22  E-value=0.14  Score=48.56  Aligned_cols=95  Identities=15%  Similarity=0.086  Sum_probs=51.2

Q ss_pred             hhhhhHHHHHH----HhchhhHHHHHhHHH---HHHHHHhhh-------h--hh-------HHHHHHHHHhhhhhHHHHh
Q 020422           74 CFSLVASLVVR----VLGSKNALILGTTGY---WLFVAANLF-------P--SW-------YTMVPASLYLGFAASIIWV  130 (326)
Q Consensus        74 ~~~l~~g~l~d----~~Grr~~l~~g~~~~---~~~~~~~~~-------~--~~-------~~l~~~r~l~G~g~g~~~~  130 (326)
                      +.|++.|..+|    |+||||.++......   +++.+.+.+       +  ..       ...++.=.+.=++.-....
T Consensus        82 ~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qg  161 (498)
T KOG0637|consen   82 LVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQG  161 (498)
T ss_pred             eecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhh
Confidence            34677787776    689999887655432   222221111       1  11       1222222233334434455


Q ss_pred             hhhHHHHHHhHhhhhhcCCCcccchhh-HHHHHHHHHHHhHHHHHHHHH
Q 020422          131 GEGTYLTAAALSHASNHKLHEGTVIGS-FNGEFWGMFASHQFVGNLITL  178 (326)
Q Consensus       131 ~~~~~l~~~~~~~~~~~~~~~~~~rg~-~~gi~~~~~~~g~~~G~li~~  178 (326)
                      .+-++++|..          .++++-+ +.+.+.....+|..+|-..+.
T Consensus       162 p~ra~L~Dl~----------~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  162 PCRALLADLA----------RGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             hHHHHHHHhc----------cChhhhhccchhHHHHHHhcceeeeeccc
Confidence            5667777765          3333333 888887777777777766554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=96.21  E-value=0.15  Score=47.86  Aligned_cols=94  Identities=23%  Similarity=0.254  Sum_probs=68.3

Q ss_pred             hHHHH-HHHhchhhHHHHHhHHHHHHHH----HhhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcc
Q 020422           78 VASLV-VRVLGSKNALILGTTGYWLFVA----ANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEG  152 (326)
Q Consensus        78 ~~g~l-~d~~Grr~~l~~g~~~~~~~~~----~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~  152 (326)
                      ..+.+ .+|.++|+.-.+|..+..+...    +....+.+.+...-++.|++.|.+..+..+.+.+..          .+
T Consensus       263 ~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt----------~~  332 (403)
T PF03209_consen  263 LAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLT----------SA  332 (403)
T ss_pred             HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCC----------CC
Confidence            34444 4578888777666654433222    223456777777889999999999988888887776          67


Q ss_pred             cchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422          153 TVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (326)
Q Consensus       153 ~~rg~~~gi~~~~~~~g~~~G~li~~~l~  181 (326)
                      ++-|.++|.+-.....+..+|..+++.+.
T Consensus       333 ~~aG~~mG~WGaaQA~A~Glg~~~GG~~~  361 (403)
T PF03209_consen  333 GRAGLFMGAWGAAQAIARGLGTFLGGALR  361 (403)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999998888888888887777654

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF12832 MFS_1_like: MFS_1 like family

Probab=95.72  E-value=0.097  Score=37.14  Aligned_cols=66  Identities=14%  Similarity=0.122  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHhHHhhhhhhcCCCCchhHH----HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHH
Q 020422           33 LSCAFLLIFLAYGAAQNLETTVNTEGNLGTIS----LGILYTSFTCFSLVASLVVRVLGSKNALILGTTG   98 (326)
Q Consensus        33 l~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~~----~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~   98 (326)
                      +...+++.|.+........+....+.+.+...    .++..++-.+++++.|.++||+|+++.++.....
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            44445555666555443333332233333322    3444455567788999999999999998876644

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=95.55  E-value=0.58  Score=43.87  Aligned_cols=145  Identities=13%  Similarity=0.062  Sum_probs=87.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHhH-----HhhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHH
Q 020422           26 YTRDVHILSCAFLLIFLAYGAA-----QNLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (326)
Q Consensus        26 ~~~~~~~l~l~~~~~~~~~~~~-----~~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~  100 (326)
                      ..|++..-+++.+++-..=..+     +.+.+....+.+++....+..+..+.++-+.+.++.+|+.+.+.+....++-.
T Consensus       234 ~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~i  313 (422)
T COG0738         234 QNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAI  313 (422)
T ss_pred             hChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            4455555555555543222222     22222222233444445677778888888888899999999999988665433


Q ss_pred             H-HHHHhhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHH
Q 020422          101 L-FVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLA  179 (326)
Q Consensus       101 ~-~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~  179 (326)
                      + .....+.++...++ +-.+.|+..++.||+..+.-.+..          + ++-....++. ...-.|.++-|.+.+.
T Consensus       314 ll~~~~~l~~g~v~~~-~l~~ig~F~simfPTIfslal~~l----------~-~~ts~~s~~l-~maivGGAiiP~l~G~  380 (422)
T COG0738         314 LLLLAVALIGGVVALY-ALFLIGLFNSIMFPTIFSLALKNL----------G-EHTSVGSGLL-VMAIVGGAIIPPLQGV  380 (422)
T ss_pred             HHHHHHHHhcChHHHH-HHHHHHHHhHHHHHHHHHHHHhcc----------C-ccccccceee-eeheecchHHHHHHHH
Confidence            3 33334677766665 458899999999999887776664          3 2223333322 2334566666666666


Q ss_pred             HhcC
Q 020422          180 VLKD  183 (326)
Q Consensus       180 l~~~  183 (326)
                      +.+.
T Consensus       381 i~d~  384 (422)
T COG0738         381 IADM  384 (422)
T ss_pred             HHHh
Confidence            6543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.48  E-value=0.2  Score=48.75  Aligned_cols=35  Identities=9%  Similarity=-0.071  Sum_probs=26.4

Q ss_pred             HHHHhhhhhhHHHHHHH----hchhhHHHHHhHHHHHHH
Q 020422           69 YTSFTCFSLVASLVVRV----LGSKNALILGTTGYWLFV  103 (326)
Q Consensus        69 ~~~~~~~~l~~g~l~d~----~Grr~~l~~g~~~~~~~~  103 (326)
                      .+.-.++.+.+|+++||    ..+|........++....
T Consensus       319 ~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g  357 (495)
T KOG2533|consen  319 DVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIG  357 (495)
T ss_pred             HhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            34446667889999999    778888888777776554

>PRK03612 spermidine synthase; Provisional

Probab=95.15  E-value=2.6  Score=41.37  Aligned_cols=29  Identities=17%  Similarity=0.044  Sum_probs=23.3

Q ss_pred             chhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 020422          154 VIGSFNGEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       154 ~rg~~~gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                      +-|+..|-.+..+.+|.++|.++.+++.-
T Consensus       142 ~~g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612        142 HLGHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             chhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence            45778888899999999999988766543

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=94.84  E-value=0.98  Score=41.64  Aligned_cols=227  Identities=19%  Similarity=0.207  Sum_probs=115.9

Q ss_pred             HHHHHHhchhhHHHHHhH-HHHHHHHHhhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhH
Q 020422           80 SLVVRVLGSKNALILGTT-GYWLFVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSF  158 (326)
Q Consensus        80 g~l~d~~Grr~~l~~g~~-~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~  158 (326)
                      =.+.|..-.|++++.-.+ ...++.+..+.++.+.+=+.-+.-|...+.    ..+|-+.++.+       .+|+++-++
T Consensus        63 FlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa----EIAYysYIYs~-------Vd~~~Yqrv  131 (433)
T KOG3810|consen   63 FLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA----EIAYYSYIYSK-------VDPEMYKRV  131 (433)
T ss_pred             HHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH----HHhhhheeeee-------cCHHHHHHH
Confidence            367899999999887443 233343333445544333334455554443    33444444322       377888898


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccc----ccccc---ccccch-
Q 020422          159 NGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK----GEKET---ADASVN-  230 (326)
Q Consensus       159 ~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~----~~~~~---~~~~~~-  230 (326)
                      .|---+..-.|-..|..++..+....   +.+-.++-+ +..+...++.++.+++|.++++    +.+++   .+.++. 
T Consensus       132 t~y~RaA~L~g~~~g~vlaQlLvs~~---~~sy~~LN~-ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~~  207 (433)
T KOG3810|consen  132 TGYCRAAFLVGKFVGSVLAQLLVSLE---TLSYTTLNY-ISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEMN  207 (433)
T ss_pred             HHHhHHHHHHHhHHHhHHHHHHhhhc---ccchhhhch-hhHHHHHHHHHHHhhCCCCchhhhhhcccccceeccchhcC
Confidence            88777777777777777776654321   112222212 2344445666778899987642    11111   000110 


Q ss_pred             -h--hch-----HHHHHHHHHHhhhcchhHHHHHH--HHHhhHHHHHhhhccccccccccc-Cc--chHHHHHHHHHHHH
Q 020422          231 -F--YSY-----LVSLSKSITTLLADVRMLLIIPL--FAYSGLQQAFVWAEFTKEIVTPAL-GV--SGVGGAMAVYGAFD  297 (326)
Q Consensus       231 -~--~~~-----~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~~~~~~~~~~~~~~~~-~~--~~~g~~~~~~gi~~  297 (326)
                       +  ..+     +....+++....++|+++.....  +..+|..+..   .|++.+-.+.. .+  -..|.+=++..+.+
T Consensus       208 ~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~---nY~Q~LW~~~~~~~~~vyNG~veAv~tlLG  284 (433)
T KOG3810|consen  208 PQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVT---NYTQILWKEVAPNPANVYNGAVEAVSTLLG  284 (433)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHH---HHHHHHHHhhCCCchhhhcCHHHHHHHHHH
Confidence             0  011     11122344556778887764432  2234443332   33333211110 11  13455555556666


Q ss_pred             HHHHHHhhhhhhh----hhhHHhHHHHHhhc
Q 020422          298 AISLLGFATFFSV----HSLLVGLPLVFHLS  324 (326)
Q Consensus       298 ~~g~~~~G~l~Dr----R~~~~~~g~~~~~~  324 (326)
                      +++.+..|.+--.    +..++.+|++..+-
T Consensus       285 a~~~~~~g~l~i~w~r~g~~ll~~~s~~~ag  315 (433)
T KOG3810|consen  285 AIAALAAGYLNINWNRWGDLLLAVGSAVQAG  315 (433)
T ss_pred             HHHHHHHHheeeccchhhHHHHHHHHHHhhh
Confidence            7888888888654    34666666665543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=94.74  E-value=4.1  Score=38.98  Aligned_cols=36  Identities=8%  Similarity=0.051  Sum_probs=28.8

Q ss_pred             cccccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          275 EIVTPALGVSGVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       275 ~~~~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      +..+++.+...+|..-....+.+..|+....++.+|
T Consensus       284 yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~r  319 (432)
T PF06963_consen  284 YLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKR  319 (432)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334456777788888888888888899999999888

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=94.08  E-value=3.5  Score=40.19  Aligned_cols=61  Identities=21%  Similarity=0.152  Sum_probs=48.3

Q ss_pred             hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHH-HHHhHHHHHHHHHHH
Q 020422          110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGM-FASHQFVGNLITLAV  180 (326)
Q Consensus       110 ~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~-~~~g~~~G~li~~~l  180 (326)
                      +.+.++.+.+++++|+-...|...+.+++.+          |++-||+.+|.++.. ..+|..+++.++...
T Consensus       376 s~~wl~~~~~~~t~gEl~~sPvgls~~~~la----------P~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        376 SLPLMVLGLAVMGFAELFIDPVAMSQITRIE----------IPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             CHHHHHHHHHHHHHHHHHHChHHHHHHHHhC----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444667889999999999999999999987          888999999998763 357777766665544

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=94.00  E-value=0.95  Score=43.70  Aligned_cols=100  Identities=15%  Similarity=0.150  Sum_probs=71.2

Q ss_pred             HHHhhhhhh-HHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhc
Q 020422           70 TSFTCFSLV-ASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNH  147 (326)
Q Consensus        70 ~~~~~~~l~-~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~  147 (326)
                      ....+++++ .+.+...+|-|+++..|+..-.+..... ++++.++.+..+++.++... ..++..+.++.+.       
T Consensus       288 ~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~-~~pa~~s~~s~~v-------  359 (463)
T KOG2816|consen  288 ILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGI-VFPAIRAFASILV-------  359 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcc-hhHHHHhHHHhhc-------
Confidence            344556655 4588999999998777776554444443 66777777766666665554 4555666676665       


Q ss_pred             CCCcccchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 020422          148 KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (326)
Q Consensus       148 ~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l  180 (326)
                         .++++|+++++....-.+...+++.+=..+
T Consensus       360 ---~~~e~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  360 ---SPEEQGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             ---ccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence               889999999999999988888887765444

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=93.89  E-value=4.3  Score=38.37  Aligned_cols=92  Identities=11%  Similarity=-0.002  Sum_probs=46.0

Q ss_pred             hhhhHHHHHHHhchhhHHHHHhHHHHHHHHH-hhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCccc
Q 020422           75 FSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGT  153 (326)
Q Consensus        75 ~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~  153 (326)
                      ..+.++++.+|...+.=+....++..+..+. .+++|.+.=+++-++.+++.|.--..-.++.. .+          ++ 
T Consensus        75 ~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y----------~~-  142 (402)
T PF02487_consen   75 VKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY----------GK-  142 (402)
T ss_pred             HHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc----------Cc-
Confidence            3467888899887443333333333333222 24566654445555666666653333222221 11          22 


Q ss_pred             chhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422          154 VIGSFNGEFWGMFASHQFVGNLITLAVL  181 (326)
Q Consensus       154 ~rg~~~gi~~~~~~~g~~~G~li~~~l~  181 (326)
                         ...+-+.++...++.+|++.-..+.
T Consensus       143 ---~~l~~wssGTG~aGl~Ga~~y~~lT  167 (402)
T PF02487_consen  143 ---SSLSAWSSGTGGAGLVGALYYLGLT  167 (402)
T ss_pred             ---cccccccCCcChhhHHHHHHHHHHH
Confidence               2345455556666777766544443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=93.65  E-value=2.6  Score=39.48  Aligned_cols=101  Identities=14%  Similarity=0.113  Sum_probs=61.6

Q ss_pred             hhhhhhHHHHHHHhc--hhhHHHHHhHHHHH-HHHHhhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCC
Q 020422           73 TCFSLVASLVVRVLG--SKNALILGTTGYWL-FVAANLFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKL  149 (326)
Q Consensus        73 ~~~~l~~g~l~d~~G--rr~~l~~g~~~~~~-~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~  149 (326)
                      .+.+....+..||..  -+-.+..++.+..- +......+....++.+-.+--+..+...++....+..          +
T Consensus       311 ~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~----------~  380 (451)
T KOG2615|consen  311 LVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASVVTCLTSLVHK----------Y  380 (451)
T ss_pred             HHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhhHHHHHHHHh----------c
Confidence            444555556666666  55555554433211 1112234444555555555555555444443333333          3


Q ss_pred             CcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 020422          150 HEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       150 ~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~  183 (326)
                      .|+++||...|++.+...++-++||++++.+..+
T Consensus       381 ~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W  414 (451)
T KOG2615|consen  381 GPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSW  414 (451)
T ss_pred             CCcccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence            4999999999999999999999999999777654

>PTZ00207 hypothetical protein; Provisional

Probab=93.13  E-value=2.9  Score=41.69  Aligned_cols=90  Identities=12%  Similarity=0.010  Sum_probs=54.4

Q ss_pred             HHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHH-HHHHHHhcC-C-CCCC
Q 020422          112 YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN-LITLAVLKD-D-KGGS  188 (326)
Q Consensus       112 ~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~-li~~~l~~~-~-~~~~  188 (326)
                      ..|++.-++.|++.|..|+......+|.+          - ++-|+...+......+|+.+=+ .+.+.+... . ..++
T Consensus       453 ~~L~~~~~lvg~~~G~~~~~~~~i~selF----------g-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~  521 (591)
T PTZ00207        453 AALPLPYFIAAFANGFMAATIALVTRTIF----------A-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQ  521 (591)
T ss_pred             cHhHHHHHHHHHHhhHhHHHHHHHHHHHh----------c-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            57888899999999999999999999986          3 5666665555444444444421 222222211 1 0000


Q ss_pred             ---CC---chhHHHHHHHHHHHHHHHHHHhc
Q 020422          189 ---TS---GTTLLFIVFLGVITLGTILMCFL  213 (326)
Q Consensus       189 ---~~---wr~~~f~~~~~~~~l~~il~~~l  213 (326)
                         .|   -| ..|++.+++++++.+....+
T Consensus       522 ~~C~G~~C~~-~~~~v~~~~~~~g~~~s~~l  551 (591)
T PTZ00207        522 DVCTERVCVV-MPLAFLLGLSFLAFITSTYV  551 (591)
T ss_pred             CeeCCceeeH-hHHHHHHHHHHHHHHHHhhe
Confidence               01   12 34777788888877765443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=93.11  E-value=1.8  Score=41.51  Aligned_cols=129  Identities=10%  Similarity=0.014  Sum_probs=76.1

Q ss_pred             HHHHHHhchhhHHHHHhHHHHHHHHHh--hh---------hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcC
Q 020422           80 SLVVRVLGSKNALILGTTGYWLFVAAN--LF---------PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (326)
Q Consensus        80 g~l~d~~Grr~~l~~g~~~~~~~~~~~--~~---------~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~  148 (326)
                      .....+..-|+++.++.++..+..+..  +.         ++.+..+.--++..+-...-+-......++++        
T Consensus       276 ~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lc--------  347 (433)
T PF03092_consen  276 RKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLC--------  347 (433)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHC--------
Confidence            344455566777777666555444331  11         12222233445666666666666666777876        


Q ss_pred             CCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC--CCCCCchhHHHHHHHHHHHHHHHHHHhccCCcc
Q 020422          149 LHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--GGSTSGTTLLFIVFLGVITLGTILMCFLRKEED  218 (326)
Q Consensus       149 ~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~--~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~  218 (326)
                        |+..-|...+++.+..++|..++..++..+.+..+  .+..+.-+...++..++.++...+..++|+.++
T Consensus       348 --P~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~  417 (433)
T PF03092_consen  348 --PKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR  417 (433)
T ss_pred             --CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence              77888999999999999999999888887766443  111111111223333444455555567777544

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=92.88  E-value=0.61  Score=43.06  Aligned_cols=47  Identities=9%  Similarity=-0.194  Sum_probs=38.4

Q ss_pred             ccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHhhc
Q 020422          278 TPALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFHLS  324 (326)
Q Consensus       278 ~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~~~  324 (326)
                      .++++.++++..+......+++...+.|.++||  ||+..+.-.++|.+
T Consensus        63 ~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~  111 (354)
T PF05631_consen   63 SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSL  111 (354)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            457777789988888888889999999999999  88777776666643

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=92.61  E-value=3.3  Score=39.97  Aligned_cols=59  Identities=15%  Similarity=0.068  Sum_probs=49.2

Q ss_pred             hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHH
Q 020422          110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL  178 (326)
Q Consensus       110 ~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~  178 (326)
                      +.+.+++..+++++|+=.+.|...++++..+          |+.-.++.++++......|+.++.-++.
T Consensus       393 s~~~lil~y~l~s~gEL~iSpvGLs~~t~la----------P~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         393 SVWWLVLSYVLQSFGELFISPVGLSMVTKLA----------PPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             CHHHHHHHHHHHHHHHHHhCHHHHHHHHHhC----------hHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            4566778899999999999998888998887          7788899999998888888887766654

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=91.50  E-value=13  Score=35.20  Aligned_cols=29  Identities=17%  Similarity=0.026  Sum_probs=21.0

Q ss_pred             HHHHHHH-HHHHHHHHHHHhhhhhhh-hhhH
Q 020422          286 VGGAMAV-YGAFDAISLLGFATFFSV-HSLL  314 (326)
Q Consensus       286 ~g~~~~~-~gi~~~~g~~~~G~l~Dr-R~~~  314 (326)
                      .-..... +.+...+|.....++-++ ||.+
T Consensus       284 ~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l  314 (406)
T KOG1479|consen  284 ALLLVFLSFNVFDLIGSILAALLTWPDPRKL  314 (406)
T ss_pred             HHHHHHHHhHHHHHhhhhhhhcccCCCCcee
Confidence            4444555 899999998888888887 5443

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=91.34  E-value=0.85  Score=43.45  Aligned_cols=82  Identities=17%  Similarity=0.194  Sum_probs=57.7

Q ss_pred             CchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH-hhhhhhHHHHHHHHHhhhhhHHHHhhhhHHHH
Q 020422           59 NLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA-NLFPSWYTMVPASLYLGFAASIIWVGEGTYLT  137 (326)
Q Consensus        59 ~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~-~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~  137 (326)
                      .+|.+.+.+.-...++.++...++.||+|-|+.+..+...+.+.+.. .+.++.+....-|...|+-.++......+.++
T Consensus       332 ~~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~  411 (498)
T KOG0637|consen  332 RMGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALA  411 (498)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHH
Confidence            45666676766777888999999999999777777766656665544 36677666667788888766666555555555


Q ss_pred             HHh
Q 020422          138 AAA  140 (326)
Q Consensus       138 ~~~  140 (326)
                      ...
T Consensus       412 ~y~  414 (498)
T KOG0637|consen  412 LYA  414 (498)
T ss_pred             HHH
Confidence            543

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=90.93  E-value=1.4  Score=31.90  Aligned_cols=64  Identities=19%  Similarity=0.057  Sum_probs=45.9

Q ss_pred             hhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhH
Q 020422           49 NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWY  112 (326)
Q Consensus        49 ~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~  112 (326)
                      .++++...+.+.+.+-.+.-|++|-++++....+.++..+++.+..+.+...+.++.+ +.++..
T Consensus        17 ~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~   81 (85)
T PF06779_consen   17 LMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW   81 (85)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            3444444444444444678889999999999999999888888888888777766654 555544

Note that many members are hypothetical proteins.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=90.61  E-value=3.3  Score=39.71  Aligned_cols=59  Identities=7%  Similarity=-0.012  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHH
Q 020422          112 YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAV  180 (326)
Q Consensus       112 ~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l  180 (326)
                      +..++.-++.|+..|-+.+.+..|..+.          .+++||..+-.+......+|...|..++..+
T Consensus       373 ~~~~~~~~l~gltnGy~~s~~m~~~p~~----------v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~  431 (437)
T TIGR00939       373 AYFIILMLLFGFSNGYLGSLSMCLAPRQ----------VDPHEREVAGALMVIFLLVGLALGAVLSFLF  431 (437)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHhcCCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334456888998887655544433332          2567888887777777778888887776444

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=90.51  E-value=10  Score=37.75  Aligned_cols=125  Identities=14%  Similarity=0.094  Sum_probs=69.4

Q ss_pred             hhhhhHHHHHHHh-chhhHHHHHhHHHHHHHHH-----hh---hh---------------h---hHHHHHHHHHhhhhhH
Q 020422           74 CFSLVASLVVRVL-GSKNALILGTTGYWLFVAA-----NL---FP---------------S---WYTMVPASLYLGFAAS  126 (326)
Q Consensus        74 ~~~l~~g~l~d~~-Grr~~l~~g~~~~~~~~~~-----~~---~~---------------~---~~~l~~~r~l~G~g~g  126 (326)
                      ...+.++.++|-| ||-+++.++.+++.+....     ..   -|               +   ...++.+..+..+|.|
T Consensus        88 ~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~g  167 (571)
T KOG1237|consen   88 LLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAG  167 (571)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccC
Confidence            3446788899865 7999998888776544321     11   11               0   1355566677778888


Q ss_pred             HHHhhhhHHHHHHhHhhhhhcCCCcccchh--hHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHH
Q 020422          127 IIWVGEGTYLTAAALSHASNHKLHEGTVIG--SFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVIT  204 (326)
Q Consensus       127 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg--~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~  204 (326)
                      +.=++..++-+|-.|+      ..|++++.  ..+.+++...+.|..++..+...+-.     ..+|.. -|.+..++-.
T Consensus       168 g~r~~~~~fGadQfd~------~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~-----~~~w~l-gf~i~~~~~~  235 (571)
T KOG1237|consen  168 GIRPCLLAFGADQFDE------LDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQD-----NVGWKL-GFGIPTVLNA  235 (571)
T ss_pred             CCCCcchhhcccccCc------cCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhh-----ccccee-eccHHHHHHH
Confidence            7666655544444321      11333334  67777777777777776555433321     235644 2444444444


Q ss_pred             HHHHHH
Q 020422          205 LGTILM  210 (326)
Q Consensus       205 l~~il~  210 (326)
                      ++++++
T Consensus       236 lai~iF  241 (571)
T KOG1237|consen  236 LAILIF  241 (571)
T ss_pred             HHHHHH
Confidence            444433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=89.66  E-value=12  Score=35.73  Aligned_cols=141  Identities=16%  Similarity=0.082  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHHHHHHHhHHhhhhhhcCCCCchhHHHHHHHHHHh----hhhhhHHHHHHHhchhhHHHHHhHHH----H
Q 020422           29 DVHILSCAFLLIFLAYGAAQNLETTVNTEGNLGTISLGILYTSFT----CFSLVASLVVRVLGSKNALILGTTGY----W  100 (326)
Q Consensus        29 ~~~~l~l~~~~~~~~~~~~~~l~~~l~~~~~~g~~~~~~~~~~~~----~~~l~~g~l~d~~Grr~~l~~g~~~~----~  100 (326)
                      .++..+++..+.|..-.+..++......+.+.....+++.=..-+    .+.+..+++.+|+|..+.=+++...=    .
T Consensus       259 ~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~  338 (432)
T PF06963_consen  259 PVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLA  338 (432)
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence            355666665555443333333333332233444333333333222    23467789999999999888877532    2


Q ss_pred             HHHHHhhhhh-h-HHHHHHHHHhhhhhH--HHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHH
Q 020422          101 LFVAANLFPS-W-YTMVPASLYLGFAAS--IIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI  176 (326)
Q Consensus       101 ~~~~~~~~~~-~-~~l~~~r~l~G~g~g--~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li  176 (326)
                      +.....+.+. . ...-..-++.|+..+  ++|.-..+. ..      ..|+..|+++||...|...+..++--.+-.++
T Consensus       339 ~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~-~q------i~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  339 LCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAV-TQ------IMQENVPESERGAVSGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             HHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHH-HH------hhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            2222233322 1 122223345566655  356543221 11      22445699999999999888777766665444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=89.14  E-value=9.5  Score=37.07  Aligned_cols=74  Identities=11%  Similarity=0.099  Sum_probs=37.7

Q ss_pred             hHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccc--ccccccCcchHHHHHHHHHHHHHHHHHHhhhhhh
Q 020422          234 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKE--IVTPALGVSGVGGAMAVYGAFDAISLLGFATFFS  309 (326)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~D  309 (326)
                      +.++..+.+++++|-|.+..+..+.+.+=.  +|..++=...  +...+++.+..+......-=..++.....|+.+.
T Consensus       263 ~i~~~Y~~l~~ilkLp~V~~li~ilL~~Ki--gF~a~da~T~LKLlEkG~~KE~LAl~~li~~P~qii~~~~~~Kws~  338 (544)
T PF13000_consen  263 SIKDVYKSLWKILKLPNVQTLIIILLTAKI--GFQANDAVTSLKLLEKGLSKEDLALLVLIDFPFQIILPYYIGKWSA  338 (544)
T ss_pred             hHHHHHHHHHHHHcCchHHHHHHHHHHHHh--ccccchhhhHHHHHHcCCCHHHhHHHHHHhhhHHHHHHHHhhhhhc
Confidence            345556677888888988877655443322  2322221111  2345666665554443333344444555554443

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.95  E-value=23  Score=34.21  Aligned_cols=76  Identities=16%  Similarity=0.108  Sum_probs=51.5

Q ss_pred             HHHHhchhhHHHHHhHHHHHHHHHh-h-----h-------------hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           82 VVRVLGSKNALILGTTGYWLFVAAN-L-----F-------------PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        82 l~d~~Grr~~l~~g~~~~~~~~~~~-~-----~-------------~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      =.+++||++.++++.++..++.+.. +     +             |++..-.+...+.|++-+..-+....++....  
T Consensus       305 rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~--  382 (461)
T KOG3098|consen  305 RIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY--  382 (461)
T ss_pred             hhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh--
Confidence            3588999999999888765544432 2     2             13445566789999999987777777777764  


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHH
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFAS  168 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~  168 (326)
                               +++|..+++++-.-...
T Consensus       383 ---------~~~~~~~fsi~kfyq~~  399 (461)
T KOG3098|consen  383 ---------PDDRAQAFSLFKFYQSV  399 (461)
T ss_pred             ---------cCchHHHHHHHHHHHHH
Confidence                     45777777765433333

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=86.02  E-value=35  Score=33.14  Aligned_cols=77  Identities=12%  Similarity=0.182  Sum_probs=47.3

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhHHhhhhhhcCC-CCchhHHHHHHHHHH---hhhhhhHHHHHHHhchhhHHHHHhHHHH
Q 020422           25 NYTRDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGTISLGILYTSF---TCFSLVASLVVRVLGSKNALILGTTGYW  100 (326)
Q Consensus        25 ~~~~~~~~l~l~~~~~~~~~~~~~~l~~~l~~~-~~~g~~~~~~~~~~~---~~~~l~~g~l~d~~Grr~~l~~g~~~~~  100 (326)
                      .+++.++-+++.+.+....+...-.+-+.+... .+...++..-.+.+.   .+.-++-..+.+++.|.+++-.-...+.
T Consensus        24 ~E~~kflpl~Ll~f~I~~ny~~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~  103 (509)
T COG3202          24 YELKKFLPLALLFFCILFNYNLLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFL  103 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence            577888888888888777777666666555433 233333322222211   2333456788999999999876665544


Q ss_pred             H
Q 020422          101 L  101 (326)
Q Consensus       101 ~  101 (326)
                      .
T Consensus       104 ~  104 (509)
T COG3202         104 G  104 (509)
T ss_pred             H
Confidence            4

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=84.05  E-value=4.6  Score=38.62  Aligned_cols=140  Identities=11%  Similarity=-0.035  Sum_probs=74.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHhhhh-hhcCC----CCchhHHHHHHHHHHhhhhhhHHHHHHHhc-hhhHHHHHhHHH
Q 020422           26 YTRDVHILSCAFLLIFLAYGAAQNLET-TVNTE----GNLGTISLGILYTSFTCFSLVASLVVRVLG-SKNALILGTTGY   99 (326)
Q Consensus        26 ~~~~~~~l~l~~~~~~~~~~~~~~l~~-~l~~~----~~~g~~~~~~~~~~~~~~~l~~g~l~d~~G-rr~~l~~g~~~~   99 (326)
                      .-++.+++.+.+.+.+..|.....+.. .+...    ...|... .+...+-.+++..+|.++||.. .|.+..+.....
T Consensus       264 ~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig-~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~  342 (480)
T KOG2563|consen  264 KNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIG-ALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFA  342 (480)
T ss_pred             cCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhH-HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence            345677777777777777776654433 44322    2334433 3333455778889999999987 455555444443


Q ss_pred             HHHHHHh--hhh---hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHH
Q 020422          100 WLFVAAN--LFP---SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN  174 (326)
Q Consensus       100 ~~~~~~~--~~~---~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~  174 (326)
                      .++++..  .+.   ....+...-.+.|.......|...-.-.|..         .|..|+ .-.|+.   +.+|+++|-
T Consensus       343 ~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~T---------yPv~E~-tSsGll---~~~gq~f~~  409 (480)
T KOG2563|consen  343 LVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETT---------YPVAEG-TSSGLL---NLSGQIFGV  409 (480)
T ss_pred             HHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeec---------cccCCc-ccceeE---EeehhHHHH
Confidence            4443221  111   2233444556677777666664433334432         144343 334543   345566665


Q ss_pred             HHHHH
Q 020422          175 LITLA  179 (326)
Q Consensus       175 li~~~  179 (326)
                      ++...
T Consensus       410 ~~~~~  414 (480)
T KOG2563|consen  410 ILVFI  414 (480)
T ss_pred             HHHHH
Confidence            54433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=83.97  E-value=0.66  Score=44.24  Aligned_cols=43  Identities=12%  Similarity=0.080  Sum_probs=37.3

Q ss_pred             ccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHh
Q 020422          280 ALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFH  322 (326)
Q Consensus       280 ~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~  322 (326)
                      +.+.+..|+....+.+.-+++++++|+++||  |+.++.+|.++-
T Consensus        64 ni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW  108 (493)
T KOG1330|consen   64 NISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW  108 (493)
T ss_pred             CCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence            5677788999999999999999999999999  998888887653

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=82.52  E-value=2.9  Score=36.92  Aligned_cols=28  Identities=4%  Similarity=-0.041  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhh---hhhHHh
Q 020422          289 AMAVYGAFDAISLLGFATFFSV---HSLLVG  316 (326)
Q Consensus       289 ~~~~~gi~~~~g~~~~G~l~Dr---R~~~~~  316 (326)
                      ...++-.+-.+|....|..+..   ||+.+.
T Consensus       146 ~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~  176 (267)
T PF07672_consen  146 FQILFVAGYFLGPFTIGLWNKTNYKRKPFIH  176 (267)
T ss_pred             HHHHHHHHHhhhceeeccchhhhhhhhhHHH
Confidence            3444555555777778887775   555433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.94
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.91
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.87
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.86
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.83
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.7
2xut_A	524	Proton/peptide symporter family protein; transport	99.68
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.15
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.97
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.9
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.83
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.78
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.18
2xut_A	524	Proton/peptide symporter family protein; transport	98.13

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.94  E-value=1.4e-24  Score=204.21  Aligned_cols=283  Identities=10%  Similarity=0.051  Sum_probs=183.8

Q ss_pred             ccccchhHHHHHHHHHHHHHHHHhHHhh----hhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHH
Q 020422           23 PKNYTRDVHILSCAFLLIFLAYGAAQNL----ETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTG   98 (326)
Q Consensus        23 ~~~~~~~~~~l~l~~~~~~~~~~~~~~l----~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~   98 (326)
                      .++.++.+..+.+.++.....+.....+    +++++.+........+...++..+++++.|+++||+|||++++.+.++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~  100 (438)
T 3o7q_A           21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL  100 (438)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence            3445556666666655554444444433    344443333323335666677788899999999999999999999998


Q ss_pred             HHHHHHHh----hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHH
Q 020422           99 YWLFVAAN----LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN  174 (326)
Q Consensus        99 ~~~~~~~~----~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~  174 (326)
                      +++..+..    ..++++.++++|++.|++.+..+++..++++|+.          |+++|+++++++..+.++|..+|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~  170 (438)
T 3o7q_A          101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLG----------PESSGHFRLNLAQTFNSFGAIIAV  170 (438)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------CSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHc----------CchhHHHHHHHHHHHHHHHHHHHH
Confidence            87766543    4689999999999999999999999999999987          889999999999999999999999


Q ss_pred             HHHHHHh-cCCCCC--------------------CCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhc
Q 020422          175 LITLAVL-KDDKGG--------------------STSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS  233 (326)
Q Consensus       175 li~~~l~-~~~~~~--------------------~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~  233 (326)
                      +++..+. ......                    ..+||+. |.+..+...+..++.++.++|+.+++++.+    +++.
T Consensus       171 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~----~~~~  245 (438)
T 3o7q_A          171 VFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTP-YMIIVAIVLLVALLIMLTKFPALQSDNHSD----AKQG  245 (438)
T ss_dssp             HHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCCTTTCCCC----SSTT
T ss_pred             HHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHcCCccccccccc----cccc
Confidence            9988876 332100                    0017763 434444444333333444333222111110    0111


Q ss_pred             hHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhccccccccc--ccCcchHHHHHHHHHHHHHHHHHHhhhhhhh-
Q 020422          234 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAISLLGFATFFSV-  310 (326)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr-  310 (326)
                      +.+   +...+.+|+|+++......+.............++++..+  +.+..+.+.......++..++.++.|+++|| 
T Consensus       246 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~  322 (438)
T 3o7q_A          246 SFS---ASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF  322 (438)
T ss_dssp             SHH---HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             chh---hhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            212   2234677888888765554333332222222223331332  4556678889999999999999999999999 


Q ss_pred             -hhhHHhHHHHHhh
Q 020422          311 -HSLLVGLPLVFHL  323 (326)
Q Consensus       311 -R~~~~~~g~~~~~  323 (326)
                       ||+.+..+.++..
T Consensus       323 ~~~~~~~~~~~~~~  336 (438)
T 3o7q_A          323 APHKVLAAYALIAM  336 (438)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHH
Confidence             6766666665443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.91  E-value=4.6e-23  Score=194.34  Aligned_cols=276  Identities=8%  Similarity=-0.054  Sum_probs=179.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhHHhhhhhhc---CCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHH
Q 020422           27 TRDVHILSCAFLLIFLAYGAAQNLETTVN---TEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFV  103 (326)
Q Consensus        27 ~~~~~~l~l~~~~~~~~~~~~~~l~~~l~---~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~  103 (326)
                      ++.+..+.++.+.............+.+.   .+........++..+...+++++.|+++||+|||++++++.+++++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~  106 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVM  106 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            44444444444444444333333333332   333333334566777888899999999999999999999999988877


Q ss_pred             HHh-h----hhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHH
Q 020422          104 AAN-L----FPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL  178 (326)
Q Consensus       104 ~~~-~----~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~  178 (326)
                      +.. +    +++++.++++|+++|++.+..+++..+++.|+.          |+++|++++|+...+.++|..+|+++++
T Consensus       107 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~----------~~~~r~~~~~~~~~~~~~g~~~g~~~~~  176 (451)
T 1pw4_A          107 LFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWW----------SQKERGGIVSVWNCAHNVGGGIPPLLFL  176 (451)
T ss_dssp             HHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTC----------TTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred             HHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHC----------CchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            764 6    789999999999999999999999999999886          8899999999999999999999999987


Q ss_pred             HHhcCCCCCCCC-chhHHHHHHHHHHHHH-HHHHHhccCCcccccccc-c--ccc-c-h--hhchHHHHHHH--HHHhhh
Q 020422          179 AVLKDDKGGSTS-GTTLLFIVFLGVITLG-TILMCFLRKEEDKGEKET-A--DAS-V-N--FYSYLVSLSKS--ITTLLA  247 (326)
Q Consensus       179 ~l~~~~~~~~~~-wr~~~f~~~~~~~~l~-~il~~~l~~~~~~~~~~~-~--~~~-~-~--~~~~~~~~~~~--~~~~~~  247 (326)
                      .+...     .+ ||+. |++.+++.++. ++..+++||++++.+.+. +  +.. + +  ++.+.+...++  ..+.++
T Consensus       177 ~l~~~-----~g~w~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (451)
T 1pw4_A          177 LGMAW-----FNDWHAA-LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP  250 (451)
T ss_dssp             HHHHH-----TCCSTTC-THHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSS
T ss_pred             HHHHH-----hccHHHH-HHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHc
Confidence            76543     35 8874 44445554443 334566777554321110 0  000 0 0  00000000111  235678


Q ss_pred             cchhHHHHHHHHHhhHHHHHhhhccccccccc--ccCcchHHHHHHHHHHHHHHHHHHhhhhhhh----hhhHHhHHH
Q 020422          248 DVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP--ALGVSGVGGAMAVYGAFDAISLLGFATFFSV----HSLLVGLPL  319 (326)
Q Consensus       248 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr----R~~~~~~g~  319 (326)
                      +++++......+..++...... .+.+.+..+  +.+..+.++.....+++..+++++.|+++||    ||+.+..+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~  327 (451)
T 1pw4_A          251 NKLLWYIAIANVFVYLLRYGIL-DWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF  327 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH-HHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHH
Confidence            8888876655444443322222 233333333  4555678899999999999999999999998    344444444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.87  E-value=8.5e-21  Score=181.14  Aligned_cols=249  Identities=8%  Similarity=-0.018  Sum_probs=153.1

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-------------------hhhhhHHHHHHHHHhhhhh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-------------------LFPSWYTMVPASLYLGFAA  125 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-------------------~~~~~~~l~~~r~l~G~g~  125 (326)
                      .+..+++..+++++.|+++||+|||+++.++.+++.++++..                   +++|++.++++|+++|+|.
T Consensus        61 ~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~  140 (491)
T 4gc0_A           61 VASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGV  140 (491)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            355667778899999999999999999999999988877643                   3689999999999999999


Q ss_pred             HHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCC---CCCCchhHHHHHHHHH
Q 020422          126 SIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG---GSTSGTTLLFIVFLGV  202 (326)
Q Consensus       126 g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~---~~~~wr~~~f~~~~~~  202 (326)
                      |..++....|++|++          |+++||+..+++..+...|..++..++.........   ...+||. .+.+....
T Consensus       141 G~~~~~~~~~i~E~~----------p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  209 (491)
T 4gc0_A          141 GLASMLSPMYIAELA----------PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY-MFASECIP  209 (491)
T ss_dssp             HHHHHHHHHHHHTTS----------CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHH-HHHTTHHH
T ss_pred             HHHHHHHHHHHHhhC----------CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHH-Hhhhhhhh
Confidence            999999999999997          899999999999999999999888887766543321   1233443 23333333


Q ss_pred             HHHHHHHHHhccCCccc----cccccccc-----cc-----hhhchHHHHHHH------HHHhhhcchhHHHHHHHHHhh
Q 020422          203 ITLGTILMCFLRKEEDK----GEKETADA-----SV-----NFYSYLVSLSKS------ITTLLADVRMLLIIPLFAYSG  262 (326)
Q Consensus       203 ~~l~~il~~~l~~~~~~----~~~~~~~~-----~~-----~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g  262 (326)
                      .++..+..+++||+++.    .++++.+.     ..     ++....++...+      .....+.++.........+..
T Consensus       210 ~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (491)
T 4gc0_A          210 ALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQ  289 (491)
T ss_dssp             HHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHH
Confidence            44444455678887641    11111000     00     000000000000      011122222222221111111


Q ss_pred             HHHHHhhhcccccccc-cccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHhhc
Q 020422          263 LQQAFVWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFHLS  324 (326)
Q Consensus       263 ~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~~~  324 (326)
                      +........|.+.+.. .+.............++...+++++++++.||  ||+.++.+.....+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~  354 (491)
T 4gc0_A          290 FVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAI  354 (491)
T ss_dssp             HTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHH
T ss_pred             HhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHH
Confidence            1111111123333322 12233345556677788889999999999999  88777766655443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.86  E-value=9.9e-21  Score=174.63  Aligned_cols=218  Identities=11%  Similarity=0.012  Sum_probs=155.0

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHh
Q 020422           64 SLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALS  142 (326)
Q Consensus        64 ~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~  142 (326)
                      ..+.......+++++.|+++||+|||+++..+.++.++..... +.++++.+++.|++.|++.+..++...+++.|+.  
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~--  117 (375)
T 2gfp_A           40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLY--  117 (375)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHC--
Confidence            3566667778889999999999999999999999888877664 6789999999999999999999999999999997  


Q ss_pred             hhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHH-HHHhccCCccccc
Q 020422          143 HASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEEDKGE  221 (326)
Q Consensus       143 ~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~i-l~~~l~~~~~~~~  221 (326)
                              |+++|+++.+++....++|..+|+.+++.+.+.     .+||.. |.+..+..++..+ ..+++||++++++
T Consensus       118 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (375)
T 2gfp_A          118 --------ERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM-----WNWRAC-YLFLLVLCAGVTFSMARWMPETRPVDA  183 (375)
T ss_dssp             --------HTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH-----HHHHHH-HHHHHHHHHHHHCCCCCSSCCCSTTTC
T ss_pred             --------CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----ccHHHH-HHHHHHHHHHHHHHHHHHCcccCCCCc
Confidence                    778999999999999999999999998877532     468863 4444444443332 2345666544322


Q ss_pred             cccccccchhhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCcchHHHHHHHHHHHHHH
Q 020422          222 KETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGVSGVGGAMAVYGAFDAI  299 (326)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~gi~~~~  299 (326)
                      +++     +...++       .+.+|+|+++......+.......... .+.|.+..  .+.+.++.+......+++..+
T Consensus       184 ~~~-----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~  250 (375)
T 2gfp_A          184 PRT-----RLLTSY-------KTLFGNSGFNCYLLMLIGGLAGIAAFE-ACSGVLMGAVLGLSSMTVSILFILPIPAAFF  250 (375)
T ss_dssp             CCC-----CTTTCS-------THHHHHHHHHHHHHHHHHHHHHHHHHH-HHCSCSSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             ccc-----cHHHHH-------HHHhcCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            110     011111       234456676665544433333322222 23333332  244556788889999999999


Q ss_pred             HHHHhhhhhhh
Q 020422          300 SLLGFATFFSV  310 (326)
Q Consensus       300 g~~~~G~l~Dr  310 (326)
                      +..+.|++.||
T Consensus       251 ~~~~~~~l~~r  261 (375)
T 2gfp_A          251 GAWFAGRPNKR  261 (375)
T ss_dssp             HHHHHHTTTTH
T ss_pred             HHHHHHHHHHH
Confidence            99999999999

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.83  E-value=5.3e-19  Score=168.81  Aligned_cols=132  Identities=11%  Similarity=0.015  Sum_probs=107.4

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHH-hchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhH
Q 020422           64 SLGILYTSFTCFSLVASLVVRV-LGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAAL  141 (326)
Q Consensus        64 ~~~~~~~~~~~~~l~~g~l~d~-~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~  141 (326)
                      ..+...++..+++++.|+++|| +|||+++..+.+++++..+.. +++|++.++++|++.|++.+..+++..++++|++ 
T Consensus        59 ~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-  137 (491)
T 4aps_A           59 IMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLY-  137 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHc-
Confidence            3566666778889999999999 899999999999888877664 7789999999999999999999999999999997 


Q ss_pred             hhhhhcCCCcccc--hhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 020422          142 SHASNHKLHEGTV--IGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (326)
Q Consensus       142 ~~~~~~~~~~~~~--rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~  211 (326)
                               |+++  |+++.+++..+.++|..+|+.+++.+.+.     .+||+. |.+..+..+++.++.+
T Consensus       138 ---------~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~g~~~~-f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          138 ---------DEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA-----AGYHVA-FSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             ---------SSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----SCHHHH-HHHHHHHHHHHHHHHH
T ss_pred             ---------CcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHH-HHHHHHHHHHHHHHHH
Confidence                     6677  77888889999999999999999887653     478874 4444444444444443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.70  E-value=7.4e-17  Score=151.39  Aligned_cols=276  Identities=13%  Similarity=0.064  Sum_probs=146.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhHH-----hhhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHH
Q 020422           28 RDVHILSCAFLLIFLAYGAAQ-----NLETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLF  102 (326)
Q Consensus        28 ~~~~~l~l~~~~~~~~~~~~~-----~l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~  102 (326)
                      |+.+.+....++.+..+....     .++++++.+........+...++..+++++.|+++||+|||++++++.+++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~   86 (417)
T 2cfq_A            7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            455555555444444433221     234444444333333456666788899999999999999999999888765442


Q ss_pred             HHH----hhhhhh-HHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHH
Q 020422          103 VAA----NLFPSW-YTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT  177 (326)
Q Consensus       103 ~~~----~~~~~~-~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~  177 (326)
                      ...    .+.+.. ..++..+.+.|++.+..+++......++.++        .+++++...|.......+|..+|+.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~g~~~~~~~~g~~~~~~l~  158 (417)
T 2cfq_A           87 FAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK--------VSRRSNFEFGRARMFGCVGWALGASIV  158 (417)
T ss_dssp             HHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHH--------HHHHHTCCHHHHSSSTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--------hhhhcccchHHHHHHHHHHHHHHHHHH
Confidence            211    122221 1233456777777777666555445444422        123567777777667788888999888


Q ss_pred             HHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCc-cccccccccccchhhchHHHHHHHHHHhhhcchhHHHHH
Q 020422          178 LAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEE-DKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIP  256 (326)
Q Consensus       178 ~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  256 (326)
                      +.+..      .+||.. |++..+..++..++.++.+|++ ++.++++++..++++.+.    ++..+.+|+|+++....
T Consensus       159 ~~l~~------~~~~~~-f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  227 (417)
T 2cfq_A          159 GIMFT------INNQFV-FWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSL----KLALELFRQPKLWFLSL  227 (417)
T ss_dssp             HHHHH------HCSHHH-HTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCH----HHHHHHTTCHHHHHHHH
T ss_pred             HHHHH------hchhHH-HHHHHHHHHHHHHHHHHcCcccccccccccccccccccccH----HHHHHHhcCCchhhHHH
Confidence            77653      257763 4333333333222333333322 111100000000111121    23345678888776443


Q ss_pred             HHHHhhHHHHHhhhcccccc---cc-cccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHh
Q 020422          257 LFAYSGLQQAFVWAEFTKEI---VT-PALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFH  322 (326)
Q Consensus       257 ~~~~~g~~~~~~~~~~~~~~---~~-~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~  322 (326)
                      ..+............++.++   .. .+.+.+..++.....++++.++.++.|+++||  ||+.+..+.++.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~  299 (417)
T 2cfq_A          228 YVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIM  299 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence            32221111111111111111   11 11223455777777788889999999999999  776666665544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.68  E-value=1.4e-15  Score=146.27  Aligned_cols=141  Identities=12%  Similarity=0.118  Sum_probs=108.5

Q ss_pred             CCCCchhHHHHHHHHHHhhhhhhHHHHHHHh-chhhHHHHHhHHHHHHHHHh-hhh-hhHHHHHHHHHhhhhhHHHHhhh
Q 020422           56 TEGNLGTISLGILYTSFTCFSLVASLVVRVL-GSKNALILGTTGYWLFVAAN-LFP-SWYTMVPASLYLGFAASIIWVGE  132 (326)
Q Consensus        56 ~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~-Grr~~l~~g~~~~~~~~~~~-~~~-~~~~l~~~r~l~G~g~g~~~~~~  132 (326)
                      .+........+...+...+++++.|+++||+ |||+++..+.+++++..+.. +++ +++.++++|++.|++.+..+++.
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  130 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV  130 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence            3433333345666677788899999999999 99999999998887776654 677 88889999999999999999999


Q ss_pred             hHHHHHHhHhhhhhcCCCcccchhhHHHH---HHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 020422          133 GTYLTAAALSHASNHKLHEGTVIGSFNGE---FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL  209 (326)
Q Consensus       133 ~~~l~~~~~~~~~~~~~~~~~~rg~~~gi---~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il  209 (326)
                      .+++.++.          |+++|+++.+.   +..+.++|..+|+.+++.+...     .+||.. |.+..++.+++.++
T Consensus       131 ~~~~~~~~----------~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~-----~g~~~~-f~~~~~~~~~~~~~  194 (524)
T 2xut_A          131 SSFMGDQF----------DQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN-----FGAAVA-FGIPGVLMFVATVF  194 (524)
T ss_dssp             HHHHHHTC----------STTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT-----SCHHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHc----------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccHHHH-HHHHHHHHHHHHHH
Confidence            99999986          78889876666   8888899999999988777643     468873 55545554444444


Q ss_pred             HHh
Q 020422          210 MCF  212 (326)
Q Consensus       210 ~~~  212 (326)
                      .++
T Consensus       195 ~~~  197 (524)
T 2xut_A          195 FWL  197 (524)
T ss_dssp             HHS
T ss_pred             HHH
Confidence            433

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.15  E-value=1.5e-09  Score=101.56  Aligned_cols=171  Identities=12%  Similarity=-0.032  Sum_probs=114.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhHHhhhhhhcCC-CCchhHH----HHHHHHHHhhhhhhHHHHHHHh--chhhHHHHHhHHHH
Q 020422           28 RDVHILSCAFLLIFLAYGAAQNLETTVNTE-GNLGTIS----LGILYTSFTCFSLVASLVVRVL--GSKNALILGTTGYW  100 (326)
Q Consensus        28 ~~~~~l~l~~~~~~~~~~~~~~l~~~l~~~-~~~g~~~----~~~~~~~~~~~~l~~g~l~d~~--Grr~~l~~g~~~~~  100 (326)
                      ++++.+.+..++....+.......+.+..+ .+.+...    .+...++..++.++.|++.||+  |||+.+..+.++..
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~  331 (451)
T 1pw4_A          252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV  331 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            455555555555554444444443443333 3333322    3333445566778899999999  99999888776655


Q ss_pred             -HHHHHh-hh--hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHH-hHHHHHH
Q 020422          101 -LFVAAN-LF--PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNL  175 (326)
Q Consensus       101 -~~~~~~-~~--~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~-g~~~G~l  175 (326)
                       +..... +.  .+.+.++..-++.|++.+..++...+++.+..          |+++||++.|++.....+ |..+|+.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~~~~~g~~~~~~~~~~~~~g~~~~~~  401 (451)
T 1pw4_A          332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELA----------PKKAAGTAAGFTGLFGYLGGSVAASA  401 (451)
T ss_dssp             HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTS----------CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHh----------chhhhhhHHHHHHHHHHHHHHHHHHH
Confidence             333332 33  35666666778889988888887777888875          888999999999999999 9999999


Q ss_pred             HHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhcc
Q 020422          176 ITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLR  214 (326)
Q Consensus       176 i~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~  214 (326)
                      +.+.+.+..     +++. .|.+..++.+++.++.++++
T Consensus       402 ~~g~l~~~~-----g~~~-~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          402 IVGYTVDFF-----GWDG-GFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHSS-----CSHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc-----CcHH-HHHHHHHHHHHHHHHHHHHH
Confidence            988876542     4554 45555666666655555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.97  E-value=1e-08  Score=95.75  Aligned_cols=133  Identities=17%  Similarity=0.090  Sum_probs=92.8

Q ss_pred             HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcC
Q 020422           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~  148 (326)
                      +...++.++.+++.||+|||+++..+.++.++..... +.++.+.+++...+.|++.+...+....+++|..        
T Consensus       270 ~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------  341 (417)
T 2cfq_A          270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF--------  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS--------
T ss_pred             HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
Confidence            3445667889999999999999988877666544333 4556666666667778877766666677888876        


Q ss_pred             CCcccchhhHHHH-HHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH-hccCCcc
Q 020422          149 LHEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC-FLRKEED  218 (326)
Q Consensus       149 ~~~~~~rg~~~gi-~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~-~l~~~~~  218 (326)
                        |++.||++.++ +.....+|..+||.+++.+.+.     .++.. .|.+.+++.+++.++.+ +.||+++
T Consensus       342 --p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-----~g~~~-~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          342 --EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-----IGFQG-AYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             --CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-----SHHHH-HHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             --CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-----cCcHH-HHHHHHHHHHHHHHHHHhhhcCCCc
Confidence              88899999998 4677778999999988877543     23433 35555666666655543 3454333

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.90  E-value=2.3e-08  Score=93.17  Aligned_cols=106  Identities=7%  Similarity=-0.159  Sum_probs=77.3

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhh
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSH  143 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~  143 (326)
                      .+...++..++.++.+++.||+|||+++..+.++.++..+.. +.++...++. -++.|++.+..++...++..+..   
T Consensus       301 ~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~---  376 (438)
T 3o7q_A          301 LTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIA-LTLCSAFMSIQYPTIFSLGIKNL---  376 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHTTHHHHHHHHHHSSC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHHHHHHHHHHHHHhhc---
Confidence            344445567778899999999999999999887776655543 4555555443 37888998888887776665553   


Q ss_pred             hhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 020422          144 ASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD  183 (326)
Q Consensus       144 ~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~  183 (326)
                             |+ +++++.++.. ...+|..++|.+.+.+.+.
T Consensus       377 -------~~-~~~~~~~~~~-~~~~g~~~~~~~~g~l~~~  407 (438)
T 3o7q_A          377 -------GQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDA  407 (438)
T ss_dssp             -------GG-GHHHHHHHHH-HTTHHHHHHHHHHHHHHHH
T ss_pred             -------cc-cccchhhHHH-HHHHHHHHHHHHHHHHHHH
Confidence                   54 4888888766 5668889999888777653

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.83  E-value=4.6e-08  Score=92.74  Aligned_cols=129  Identities=10%  Similarity=-0.085  Sum_probs=86.3

Q ss_pred             HHHHHhhhhhhHHHHHHHhchhhHHH-----HHhHHHHHHHHHh-hh---------hhhHHHHHHHHHhhhhhHHHHhhh
Q 020422           68 LYTSFTCFSLVASLVVRVLGSKNALI-----LGTTGYWLFVAAN-LF---------PSWYTMVPASLYLGFAASIIWVGE  132 (326)
Q Consensus        68 ~~~~~~~~~l~~g~l~d~~Grr~~l~-----~g~~~~~~~~~~~-~~---------~~~~~l~~~r~l~G~g~g~~~~~~  132 (326)
                      ......++.++.+++.||+|||+...     .+.++.++..... ..         .+++.++..-++.|++.+...+..
T Consensus       328 ~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~  407 (491)
T 4aps_A          328 NPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVG  407 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHH
T ss_pred             chHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHH
Confidence            33444566788899999999986544     4444443333222 21         155566667789999999888888


Q ss_pred             hHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHh
Q 020422          133 GTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF  212 (326)
Q Consensus       133 ~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~  212 (326)
                      ..++.+..          |+++||++.|++.....+|..+|+.+.+.+...      +... .|....++.+++.++.++
T Consensus       408 ~~~~~~~~----------p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~  470 (491)
T 4aps_A          408 LSVTTKLA----------PKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK------SEVA-YFSYFGLGSVVLGIVLVF  470 (491)
T ss_dssp             HHHHHHHT----------TTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS------STTH-HHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHhC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cHHH-HHHHHHHHHHHHHHHHHH
Confidence            88888886          888999999999999999999999887666432      2222 355555555555444444


Q ss_pred             c
Q 020422          213 L  213 (326)
Q Consensus       213 l  213 (326)
                      +
T Consensus       471 ~  471 (491)
T 4aps_A          471 L  471 (491)
T ss_dssp             C
T ss_pred             H
Confidence            3

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.78  E-value=4.9e-08  Score=92.48  Aligned_cols=142  Identities=13%  Similarity=0.099  Sum_probs=83.5

Q ss_pred             HHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHH--h-hh---hhhHHHHHHHHHhhhhhHH-HHhhhhHHHHHH
Q 020422           67 ILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAA--N-LF---PSWYTMVPASLYLGFAASI-IWVGEGTYLTAA  139 (326)
Q Consensus        67 ~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~--~-~~---~~~~~l~~~r~l~G~g~g~-~~~~~~~~l~~~  139 (326)
                      +..+...++.++++.+.||+|||+.++.+..+.++....  . ..   +++..++ .-.+...+.+. ..+....|.+|.
T Consensus       320 ~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~  398 (491)
T 4gc0_A          320 IVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALL-SMLFYVAAFAMSWGPVCWVLLSEI  398 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH-HHHHHHHHHHTTTTHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHH-HHHHHHHHHHhHHHHHHHHHHHHh
Confidence            333455667788999999999999999887765544332  1 11   1222221 11121112121 123345788888


Q ss_pred             hHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCC-CCCCCchhHHHHHHHHHHHHHHH-HHHhccCCc
Q 020422          140 ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-GGSTSGTTLLFIVFLGVITLGTI-LMCFLRKEE  217 (326)
Q Consensus       140 ~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~-~~~~~wr~~~f~~~~~~~~l~~i-l~~~l~~~~  217 (326)
                      +          |.+.|+++.|+......++..+++.+...+..... ....++. ..|++++++++++.+ .++++||++
T Consensus       399 f----------Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~-~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          399 F----------PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNG-FSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             S----------CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             C----------CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHheecCCC
Confidence            6          88999999999988888888877665444322100 0001121 236667777776554 457899987


Q ss_pred             ccc
Q 020422          218 DKG  220 (326)
Q Consensus       218 ~~~  220 (326)
                      .+.
T Consensus       468 g~t  470 (491)
T 4gc0_A          468 GKT  470 (491)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            643

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.18  E-value=2.8e-06  Score=77.37  Aligned_cols=61  Identities=10%  Similarity=0.032  Sum_probs=51.0

Q ss_pred             hhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 020422          110 SWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL  181 (326)
Q Consensus       110 ~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~  181 (326)
                      +.+.++..-++.|++.+..++...+++.+..          | ++||++.|+......+|..+|+.+.+.+.
T Consensus       290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  350 (375)
T 2gfp_A          290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPF----------P-FLAGTAGALVGGLQNIGSGVLASLSAMLP  350 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHH----------H-HHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhC----------C-cccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5666666778999999999998888888875          5 78999999999999999999888776654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.13  E-value=1.9e-06  Score=82.22  Aligned_cols=83  Identities=11%  Similarity=-0.027  Sum_probs=64.0

Q ss_pred             hHHHHHhHHHHHHHHHh-hh---------hhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHH
Q 020422           90 NALILGTTGYWLFVAAN-LF---------PSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFN  159 (326)
Q Consensus        90 ~~l~~g~~~~~~~~~~~-~~---------~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~  159 (326)
                      +.+..+.++.++..+.. ..         .+.+.+++.-++.|++.+...+...+++.+..          |+++||+++
T Consensus       374 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~----------p~~~~g~~~  443 (524)
T 2xut_A          374 RKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQA----------PKAMKGTIM  443 (524)
T ss_dssp             HHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHC----------CTTCCTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------cHHHHhHHH
Confidence            45566666555544432 22         25556667789999999999998888888886          889999999


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHhc
Q 020422          160 GEFWGMFASHQFVGNLITLAVLK  182 (326)
Q Consensus       160 gi~~~~~~~g~~~G~li~~~l~~  182 (326)
                      |++.....+|..+|+.+.+.+..
T Consensus       444 g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          444 SFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999998877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	326
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.9
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.71
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.22
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.0

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.1e-22  Score=186.56  Aligned_cols=230  Identities=9%  Similarity=-0.039  Sum_probs=153.8

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-h----hhhhHHHHHHHHHhhhhhHHHHhhhhHHHH
Q 020422           63 ISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-L----FPSWYTMVPASLYLGFAASIIWVGEGTYLT  137 (326)
Q Consensus        63 ~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~----~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~  137 (326)
                      +..+...+++++++++.|+++||+|||+++..+.++.++..+.. +    .+++..+++.|++.|++.|..+++...+++
T Consensus        63 ~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~  142 (447)
T d1pw4a_          63 FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV  142 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            34567778889999999999999999999999998877766543 3    347788889999999999999999888998


Q ss_pred             HHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHH-HHHHHHHhccCC
Q 020422          138 AAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVIT-LGTILMCFLRKE  216 (326)
Q Consensus       138 ~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~-l~~il~~~l~~~  216 (326)
                      ++.          |+++|++++|++..+..+|..+|++++.......    .+||+. |++...+.+ ++++..++++++
T Consensus       143 ~~~----------~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~----~~w~~~-~~~~~~~~~~~~~~~~~~~~~~  207 (447)
T d1pw4a_         143 HWW----------SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF----NDWHAA-LYMPAFCAILVALFAFAMMRDT  207 (447)
T ss_dssp             TTC----------TTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT----CCSTTC-THHHHHHHHHHHHHHHHHCCCS
T ss_pred             HHH----------HhhcccccccccccccchhhhhhhhhhhhHhhhh----hccccc-chhhhhhHHHHHHHHHHhcccc
Confidence            886          8899999999999999999999998877655432    367764 334444443 344445566665


Q ss_pred             ccccccc-----cccccch------hhchHHHHHHHHHHhhhcchhHHHHHHHHHhhHHHHHhhhcccccccc--cccCc
Q 020422          217 EDKGEKE-----TADASVN------FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVT--PALGV  283 (326)
Q Consensus       217 ~~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~  283 (326)
                      +++...+     .++..+.      ++.+.++  ....+.++++.++......++......... .+.+.+..  .+.+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  284 (447)
T d1pw4a_         208 PQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQ--IFMQYVLPNKLLWYIAIANVFVYLLRYGIL-DWSPTYLKEVKHFAL  284 (447)
T ss_dssp             STTTCCCSCTTTCCC-------------CCTH--HHHHHTSSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHBTTBSCCCH
T ss_pred             hhhcccchhhhhhhhcccchhhccccccchhh--HHHHHHHcCchHHHHHHHhhhhhhhhhcch-hhhhhhccccccccc
Confidence            4321110     0000000      0000011  112345677777765544333332222222 22233322  34556


Q ss_pred             chHHHHHHHHHHHHHHHHHHhhhhhhh
Q 020422          284 SGVGGAMAVYGAFDAISLLGFATFFSV  310 (326)
Q Consensus       284 ~~~g~~~~~~gi~~~~g~~~~G~l~Dr  310 (326)
                      ...+.......++..++.++.|+++||
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~g~~~~~  311 (447)
T d1pw4a_         285 DKSSWAYFLYEYAGIPGTLLCGWMSDK  311 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhcchhhhhhhhhhhhhhhhh
Confidence            678888899999999999999999999

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=3.3e-16  Score=141.34  Aligned_cols=280  Identities=12%  Similarity=0.044  Sum_probs=149.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHhHHh-----hhhhhcCCCCchhHHHHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHH
Q 020422           26 YTRDVHILSCAFLLIFLAYGAAQN-----LETTVNTEGNLGTISLGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYW  100 (326)
Q Consensus        26 ~~~~~~~l~l~~~~~~~~~~~~~~-----l~~~l~~~~~~g~~~~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~  100 (326)
                      +.||.+++++.+++.+..+.....     +++..+.+..+-....++..+...+++++.|+++||+|||++++++..+..
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   84 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            457888888887776666554432     223333222211122456666778889999999999999999999887776


Q ss_pred             HHHHHh-hhhh----hHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcCCCcccchhhHHHHHHHHHHHhHHHHHH
Q 020422          101 LFVAAN-LFPS----WYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNL  175 (326)
Q Consensus       101 ~~~~~~-~~~~----~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~g~~~G~l  175 (326)
                      +..... ..++    ....+..+.+.|.+.+...........+..++        .++++.+..+........+..+|+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~  156 (417)
T d1pv7a_          85 VMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEK--------VSRRSNFEFGRARMFGCVGWALGAS  156 (417)
T ss_dssp             HTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHH--------HHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccc--------hhhhhHHHHHHHhhhhccccccccc
Confidence            655443 3222    22334456666666665555443333333321        2344566677777778888888988


Q ss_pred             HHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHhccCCccccccccccccchhhchHHHHHHHHHHhhhcchhHHHH
Q 020422          176 ITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLII  255 (326)
Q Consensus       176 i~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  255 (326)
                      +++.+...      +|+...+.......+...+..+.+++++.+++++.++.+.++.....    ...+..+++..+...
T Consensus       157 ~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  226 (417)
T d1pv7a_         157 IVGIMFTI------NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLK----LALELFRQPKLWFLS  226 (417)
T ss_dssp             HHHHHHHH------CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCCCCHH----HHHHHTTSSHHHHHH
T ss_pred             cccccccc------cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhccccccc----ccccccccccccchh
Confidence            88777542      34443333333333344444555665544322211110111111111    111333333333322


Q ss_pred             HHHHHhhHHHHH---hhhccccccc-ccccCcchHHHHHHHHHHHHHHHHHHhhhhhhh--hhhHHhHHHHHhh
Q 020422          256 PLFAYSGLQQAF---VWAEFTKEIV-TPALGVSGVGGAMAVYGAFDAISLLGFATFFSV--HSLLVGLPLVFHL  323 (326)
Q Consensus       256 ~~~~~~g~~~~~---~~~~~~~~~~-~~~~~~~~~g~~~~~~gi~~~~g~~~~G~l~Dr--R~~~~~~g~~~~~  323 (326)
                      ............   ....+..... ....+....+.......++..++..+.+++.||  |++.+..+.++..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~  300 (417)
T d1pv7a_         227 LYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMS  300 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHH
Confidence            222111111111   1111111111 122334456677778888889999999999999  6666666655443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=8.2e-11  Score=105.13  Aligned_cols=133  Identities=16%  Similarity=0.080  Sum_probs=101.3

Q ss_pred             HHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHHHh-hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHHHhHhhhhhcC
Q 020422           70 TSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVAAN-LFPSWYTMVPASLYLGFAASIIWVGEGTYLTAAALSHASNHK  148 (326)
Q Consensus        70 ~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~~~-~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~~~~~~~~~~~  148 (326)
                      ....++..+.+++.||+|+|+++..+.++.++..... +.++.+.+++.-++.|++.+..++...+++.+..        
T Consensus       270 ~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~--------  341 (417)
T d1pv7a_         270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF--------  341 (417)
T ss_dssp             HHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------
T ss_pred             cccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC--------
Confidence            3445667788999999999999999988877766654 6778888888889999999999999889998886        


Q ss_pred             CCcccchhhHHHHHH-HHHHHhHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHH-HhccCCcc
Q 020422          149 LHEGTVIGSFNGEFW-GMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILM-CFLRKEED  218 (326)
Q Consensus       149 ~~~~~~rg~~~gi~~-~~~~~g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~-~~l~~~~~  218 (326)
                        |+++||+..|+.. ....+|..+|+.+.+.+.+.     .|++. .|++.+++.++..++. ++++++.+
T Consensus       342 --~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~-----~g~~~-~~~~~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         342 --EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-----IGFQG-AYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             --CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-----HCHHH-HHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             --CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCHHH-HHHHHHHHHHHHHHHHHHhhcCCCc
Confidence              8899999999865 45678899999988877653     35655 3555566655544444 55555443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=4.6e-09  Score=95.44  Aligned_cols=131  Identities=13%  Similarity=-0.093  Sum_probs=86.3

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHhchhhHHHHHhHHHHHHHH---Hh---hhhhhHHHHHHHHHhhhhhHHHHhhhhHHHHH
Q 020422           65 LGILYTSFTCFSLVASLVVRVLGSKNALILGTTGYWLFVA---AN---LFPSWYTMVPASLYLGFAASIIWVGEGTYLTA  138 (326)
Q Consensus        65 ~~~~~~~~~~~~l~~g~l~d~~Grr~~l~~g~~~~~~~~~---~~---~~~~~~~l~~~r~l~G~g~g~~~~~~~~~l~~  138 (326)
                      .++......++.++.|++.||++||+..........+...   ..   ...+.+..+.+-++.|++.+...+....+..+
T Consensus       291 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  370 (447)
T d1pw4a_         291 YFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALE  370 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             hhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455567788999999999987655444333222221   11   13456666666778888888877777777777


Q ss_pred             HhHhhhhhcCCCcccchhhHHHHHHHHHHH-hHHHHHHHHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 020422          139 AALSHASNHKLHEGTVIGSFNGEFWGMFAS-HQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMC  211 (326)
Q Consensus       139 ~~~~~~~~~~~~~~~~rg~~~gi~~~~~~~-g~~~G~li~~~l~~~~~~~~~~wr~~~f~~~~~~~~l~~il~~  211 (326)
                      ..          |+++||++.|+......+ |..+++.+.+.+.+.     .||+.. |....++.+++.++..
T Consensus       371 ~~----------p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~-----~g~~~~-~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         371 LA----------PKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-----FGWDGG-FMVMIGGSILAVILLI  428 (447)
T ss_dssp             TS----------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----SCSHHH-HHHHHHHHHHHHHHHH
T ss_pred             Hc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hChHHH-HHHHHHHHHHHHHHHH
Confidence            76          888999999998877666 556788887777654     367653 4455555555554443