Citrus Sinensis ID: 020441

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEKAFYSPRS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHEEcccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccHEEHHHHHHHHHHHHHHHHccccHHEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHEHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHHHcccccccc
Coil and Loop (DISEMBL)
mvpaslylGFAASIIWVGEGTYLTAAALSHasnhklhegtvigsfngefwgmfashQFVGNLITLAVlkddkggstsgtTLLFIVFLGVITLGTILMCFLRkeedkgeketadASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEivtpalgvsgvggaMAVYGAFDAICSLAAgrlttglpsitfIVSGGAIAQVVVFLWILINYSvtsgvlgtLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEkafysprs
Flexible Loop (DISEMBL)
MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQvekafysprs
Low Complexity Region (SEG)
MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEKAFYSPRS
Disordered region (IsUnstruct)
****SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRK**********DASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEKAFY****
Disordered Region (DISOPRED)
MVPASLYLGFAASIIWVGEGTYLTAAALSHA***KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED***************YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTI***********
Disordered Region (DISEMBL)
MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE********ADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEKAFYSPRS
Disordered Region (DISPRO)
MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEED***********NFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEK*******
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEKAFYSPRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	326	2.2.26 [Sep-21-2011]
Q94AA1	464	UNC93-like protein 3 OS=A	no	no	0.923	0.648	0.740	1e-124
Q6DDL7	460	Protein unc-93 homolog A	N/A	no	0.892	0.632	0.28	6e-23
Q86WB7	457	Protein unc-93 homolog A	no	no	0.911	0.649	0.278	1e-21
Q5SPF7	465	Protein unc-93 homolog A	yes	no	0.966	0.677	0.267	1e-20
Q710D3	458	Protein unc-93 homolog A	yes	no	0.917	0.652	0.282	4e-20
Q9Y115	538	UNC93-like protein OS=Dro	yes	no	0.950	0.576	0.253	3e-19
A2VE54	457	Protein unc-93 homolog A	yes	no	0.889	0.634	0.270	2e-18
Q93380	705	Putative potassium channe	yes	no	0.892	0.412	0.252	2e-17
O43934	449	UNC93-like protein MFSD11	no	no	0.929	0.674	0.273	9e-16
Q5RCQ5	449	UNC93-like protein MFSD11	no	no	0.929	0.674	0.273	2e-15

>sp|Q94AA1|UN933_ARATH UNC93-like protein 3 OS=Arabidopsis thaliana GN=At3g09470 PE=2 SV=1

 Score =  444 bits (1142), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/301 (74%), Positives = 253/301 (84%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           MVPASLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  G
Sbjct: 113 MVPASLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFG 172

Query: 61  NLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS 120
           NLITLA+LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V    
Sbjct: 173 NLITLALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVD 232

Query: 121 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVY 180
            L SL + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVY
Sbjct: 233 SLASLPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVY 292

Query: 181 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 240
           GA DA+CS+ AGR T+GL SITFIVSGGA+AQ  VFLW+L+ Y  TSGVLGT YPLIMAA
Sbjct: 293 GALDAVCSMTAGRFTSGLSSITFIVSGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIMAA 352

Query: 241 LLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMV 300
           +LGIGDG+LNTQ+SALL +LFKHDTEGAFAQLKVWQ A+IA+VFF+ PYISLQAMLIVM+
Sbjct: 353 ILGIGDGILNTQISALLALLFKHDTEGAFAQLKVWQSAAIAIVFFLSPYISLQAMLIVML 412

Query: 301 V 301
           V
Sbjct: 413 V 413

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DDL7|UN93A_XENLA Protein unc-93 homolog A OS=Xenopus laevis GN=unc93a PE=2 SV=1

 Score =  108 bits (270), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 98/350 (28%), Positives = 152/350 (43%), Gaps = 59/350 (16%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           ++P SL LGF  + +W  + TYLT +   +A         ++  + G F+ +F S    G
Sbjct: 92  LIPTSLILGFGGAPLWAAKCTYLTESGNRYAEKKGKLAKDIVNQYFGLFFLIFQSSGVWG 151

Query: 61  NLITLAVL--------------------KDDKG-------GSTSGTTLLFIVFLGVIT-- 91
           NLI+  +                      D  G       G+T  T  L    LGV T  
Sbjct: 152 NLISSLIFGQNYPAGSNDSFTDYSQCGANDCPGTNFGNGTGTTKPTKSLIYTLLGVYTGS 211

Query: 92  --LGTILMCF------LRKEEDK-GEKETADASVNFYSYLVSLSKSI---TTLLADVRML 139
             L  IL+        LR ++ K G KE             S SK I      L D R  
Sbjct: 212 GVLAVILIAVFLDTINLRTDQLKPGTKEE------------SFSKKILATVRHLKDKRQC 259

Query: 140 LIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLP 199
           L+IPL  YSG +Q F+  ++TK  VT +LG+  VG  M  + A +A+CSL  G+L+    
Sbjct: 260 LLIPLTMYSGFEQGFLSGDYTKSYVTCSLGIHFVGYVMICFAATNAVCSLLFGQLSKYTG 319

Query: 200 SIT-FIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLG 258
            I  FI++  + A  V+ L +   Y     V       I  A+ G+ D +  TQ +AL G
Sbjct: 320 RICLFILAAVSNAACVIALLLWEPYPNDFAVF-----FIFPAIWGMADAIWQTQTNALYG 374

Query: 259 ILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALV 308
           +LF    E AFA  ++W+     + +    ++ +   L +++  + +A+V
Sbjct: 375 VLFDEHKEAAFANYRLWESLGFVIAYGYSTFLCVSVKLYILLAVLLIAIV 424

Xenopus laevis (taxid: 8355)

>sp|Q86WB7|UN93A_HUMAN Protein unc-93 homolog A OS=Homo sapiens GN=UNC93A PE=2 SV=1

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 159/348 (45%), Gaps = 51/348 (14%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           ++P S+ LG  A+ +W  + TYLT    +HA         ++  + G F+ +F S    G
Sbjct: 93  LIPTSILLGLGAAPLWSAQCTYLTITGNTHAEKAGKRGKDMVNQYFGIFFLIFQSSGVWG 152

Query: 61  NLITLAVLKDDKGGST-------------------------SGTTLLFIVFLGVITLGTI 95
           NLI+  V        T                           +  L    LG+ T   +
Sbjct: 153 NLISSLVFGQTPSQETLPEEQLTSCGASDCLMATTTTNSTQRPSQQLVYTLLGIYTGSGV 212

Query: 96  LM-----CFLRKEED-KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSG 149
           L       FL+   D + E E    SV F+S L+S  K    L  D R+ L+I L  YSG
Sbjct: 213 LAVLMIAAFLQPIRDVQRESEGEKKSVPFWSTLLSTFK----LYRDKRLCLLILLPLYSG 268

Query: 150 LQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLT--TGLPSITFIVSG 207
           LQQ F+ +E+T+  VT  LG+  VG  M  + A DA+CS+  G+++  TG  ++ +++  
Sbjct: 269 LQQGFLSSEYTRSYVTCTLGIQFVGYVMICFSATDALCSVLYGKVSQYTG-RAVLYVL-- 325

Query: 208 GAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEG 267
           GA+  V   + +L+ +   +  L   +  + + L G+ D V  TQ +AL G+LF+   E 
Sbjct: 326 GAVTHVSCMIALLL-WRPRADHLAVFF--VFSGLWGVADAVWQTQNNALYGVLFEKSKEA 382

Query: 268 AFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTI 315
           AFA  ++W+     + F    ++ +   L +        L+G+L LT+
Sbjct: 383 AFANYRLWEALGFVIAFGYSMFLCVHVKLYI--------LLGVLSLTM 422

Homo sapiens (taxid: 9606)

>sp|Q5SPF7|UN93A_DANRE Protein unc-93 homolog A OS=Danio rerio GN=unc93a PE=3 SV=1

 Score =  100 bits (249), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 157/363 (43%), Gaps = 48/363 (13%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           ++  S  LG   S +W  + TYLT +       H      +I  + G F+ +F S    G
Sbjct: 93  LMSTSAILGMGGSPLWSAKCTYLTISGNRQGQKHNKKGQDLINQYFGIFFFIFQSSGVWG 152

Query: 61  NLITLAVLKDDK-----------------------GGSTSGTTLLFIVFLGV-ITLGTIL 96
           NL++  +   D+                       G ST  +  L    LG  I +G + 
Sbjct: 153 NLMSSLIFGQDQNIVPKENLEFCGVSTCLDNFTVIGNSTRPSKHLVDTLLGCYIGVGLLA 212

Query: 97  MCF-------LRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSG 149
           + F       + ++E K E  +   + +F+   ++  K +       R+LL+IPL  YSG
Sbjct: 213 IIFVAVFLDNIDRDEAK-EFRSTKGNKSFWDTFLATFKLLRD----PRLLLLIPLTMYSG 267

Query: 150 LQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGA 209
            +Q+F+  E+TK  VT ALG+  VG  M  + A +++CS A GRL      I       A
Sbjct: 268 FEQSFLSGEYTKNYVTCALGIHNVGFVMICFAASNSLCSFAFGRLAQYTGRIALFCLAAA 327

Query: 210 IAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAF 269
           I  +  FL +L  +      L   +  +  AL G+ D V  TQ +AL GILF  + E AF
Sbjct: 328 I-NLGSFLGLLY-WKPHPDQLAIFF--VFPALWGMADAVWQTQTNALYGILFAKNKEAAF 383

Query: 270 AQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFL--------TIQVEKAF 321
           A  ++W+     + F    +I L   + + +  + + +V  L++        T QV + F
Sbjct: 384 ANYRMWESLGFVIAFAYSTFICLSTKIYIALAVLALTMVTYLYVEYNEYKHPTPQVTEDF 443

Query: 322 YSP 324
             P
Sbjct: 444 LKP 446

Danio rerio (taxid: 7955)

>sp|Q710D3|UN93A_MOUSE Protein unc-93 homolog A OS=Mus musculus GN=Unc93a PE=2 SV=1

 Score = 99.4 bits (246), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 152/343 (44%), Gaps = 44/343 (12%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           ++P S+ LG  A+ +W  +GTYLT      A         V+  + G F+ +F S    G
Sbjct: 93  LIPTSILLGLGAAPLWSAQGTYLTTMGNLQAEKVGKLGKDVVNQYFGIFFLVFQSSGVWG 152

Query: 61  NLITLAVL-------------------KDDKGGSTSGTTL------LFIVFLGVIT---- 91
           NLI+  V                    KD   G  +  +       L    LG+ T    
Sbjct: 153 NLISSLVFGKMSMQEAIPEEQLMSCGAKDCLMGPAATNSTHHPSQQLIYTLLGIYTGCGV 212

Query: 92  LGTILMC-FLRKEEDK--GEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYS 148
           L  +L+  FL   EDK   E E        +S L+S       L  D R+ L++ L  YS
Sbjct: 213 LAILLVAVFLESLEDKLENEGERRPRPPPLWSTLLS----TFMLFRDKRLCLLMFLPLYS 268

Query: 149 GLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGG 208
           G QQ F+  E+TK  VT ALG+  VG  M  + A  A+CSL  G+++           G 
Sbjct: 269 GFQQEFLSGEYTKSYVTCALGIHFVGYVMICFSAMTALCSLLYGKISKYTGRAALYALGA 328

Query: 209 AI--AQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTE 266
           AI  + +VVFL     +   +  L   +  +++ L G+ D V  TQ +AL G+LF+ + E
Sbjct: 329 AIHFSCIVVFLL----WHPNTNQLPVFF--VLSGLWGMSDAVWQTQNNALFGVLFEENKE 382

Query: 267 GAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVG 309
            AFA  ++ +     + F    ++ +   L +++  + +A+VG
Sbjct: 383 PAFANYRLGEAIGFVIAFGYSSFLCVSTKLYILLGVLSLAMVG 425

Mus musculus (taxid: 10090)

>sp|Q9Y115|UN93L_DROME UNC93-like protein OS=Drosophila melanogaster GN=CG4928 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 154/351 (43%), Gaps = 41/351 (11%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           +VPA + +G  A+ +W  + TYLT     +A   +     +I  F G F+  + S +  G
Sbjct: 131 LVPAGILVGMGAAPMWASKATYLTQVGQVYAKITEQAVDAIIVRFFGFFFLAWQSAELWG 190

Query: 61  NLITLAVL----------------KDDKG--GSTSGTT-----------------LLFIV 85
           NLI+  VL                ++D    G+   TT                  + ++
Sbjct: 191 NLISSLVLSSGAHGGGSSSNTTVSEEDLQFCGANFCTTGSGGHGNLERPPEDEIFEISMI 250

Query: 86  FLGVITLG-TILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPL 144
           +L  I     I+  FL   +  GEK     S    S L  LS +   +     + L+IP+
Sbjct: 251 YLSCIVAAVCIIAFFLDPLKRYGEKRKGSNSAAELSGLQLLSATFRQM-KKPNLQLLIPI 309

Query: 145 FAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFI 204
             + G++QAF+ A+FT+  V  ALGV+ +G  M  +G  +A+CS+  G +   +     I
Sbjct: 310 TVFIGMEQAFIGADFTQAYVACALGVNKIGFVMICFGVVNALCSILFGSVMKYIGRTPII 369

Query: 205 VSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD 264
           V G     VV F  I +           +    M+ L G+GD V  TQ++ L G+LF+ +
Sbjct: 370 VLGA----VVHFTLITVELFWRPNPDNPIIFYAMSGLWGVGDAVWQTQINGLYGLLFRRN 425

Query: 265 TEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTI 315
            E AF+  ++W+ A   + +     +  Q  L +++  + +  +G + + I
Sbjct: 426 KEAAFSNYRLWESAGFVIAYAYATTLCTQMKLYILLAVLTLGCIGYVIVEI 476

Drosophila melanogaster (taxid: 7227)

>sp|A2VE54|UN93A_BOVIN Protein unc-93 homolog A OS=Bos taurus GN=UNC93A PE=2 SV=1

 Score = 93.2 bits (230), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 150/333 (45%), Gaps = 43/333 (12%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           ++PAS+ +G  A+ +W  +GTYLT      A         V+  + G F+ +F S    G
Sbjct: 93  LIPASVLVGLGAAALWSAQGTYLTIVGNMQARKTGQVGKDVVSQYFGIFFLIFQSSGVWG 152

Query: 61  NLI---------TLAVLKDDK----------------GGSTSGTTLLFIVFLGVIT---- 91
           NLI         T   + +++                  +   +  L    LG+ T    
Sbjct: 153 NLISSLVFGQMPTQGTIPEEQLQACGASDCLMATLSANSTNRPSQDLIYTLLGIYTGCGF 212

Query: 92  LGTILMC-FLRKEED-KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSG 149
           L  +LM  FL    D + E E    +  F+S L+S  K +      + +LL       SG
Sbjct: 213 LAVLLMAVFLEPVRDAQPEGEDEKQAPPFWSTLLSTFKLLRDKRLRLLILLP----MLSG 268

Query: 150 LQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLT--TGLPSITFIVSG 207
            +QAF+  ++T+   T ALG+  VG  M  +GA DA+CS+  GRL   TG    T + + 
Sbjct: 269 FEQAFLSGDYTRSYTTCALGIQFVGYVMICFGAADALCSVLFGRLARHTGR---TVLFAL 325

Query: 208 GAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEG 267
           GA+ Q+   + +L+ +      L   +  +  +L G+ D V  TQ +AL G+LF+ + E 
Sbjct: 326 GAVTQLACIIALLL-WKPHPSQLPVFF--VFPSLWGMADAVWQTQNNALFGVLFEKNKEA 382

Query: 268 AFAQLKVWQCASIAVVFFIGPYISLQAMLIVMV 300
           AFA  ++W+     + F    ++ +   L V++
Sbjct: 383 AFANYRLWEALGFVIAFGYSTFLCVSVKLYVLL 415

Bos taurus (taxid: 9913)

>sp|Q93380|UNC93_CAEEL Putative potassium channel regulatory protein unc-93 OS=Caenorhabditis elegans GN=unc-93 PE=1 SV=4

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 166/349 (47%), Gaps = 58/349 (16%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           M+PAS++ G AAS IW  +  Y+T   + +AS +   + TVI  F G F+ +    Q VG
Sbjct: 333 MIPASIFCGIAASCIWGAKCAYITEMGIRYASLNFESQTTVIVRFFGYFFMIVHCGQVVG 392

Query: 61  NLITLAVL-----------KD---DKGGSTSGTTLLFIVFLG------------------ 88
           N+++  +            +D   D  G      L  +  L                   
Sbjct: 393 NMVSSYIFTLSYSQALRGPEDSIYDSCGYQFPKNLSDLTELAESNLARPPQKVYVAVCLA 452

Query: 89  ----VITLGTILMCFLRK-EEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIP 143
               VI  G I+  FL    +D   ++ A     F S +  L   +   L +++ +L++P
Sbjct: 453 YLACVIISGMIMSMFLNALAKDARNRKMAQ---KFNSEIFYL---MLKHLINIKFMLLVP 506

Query: 144 LFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAG---RLTTGLPS 200
           L  ++GL+QAF+   +TK  V   LG+  +G  MA +G  DA+CSL  G   +L   +P 
Sbjct: 507 LTIFNGLEQAFLVGVYTKAFVGCGLGIWQIGFVMACFGISDAVCSLVFGPLIKLFGRMPL 566

Query: 201 ITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSAL-LGI 259
             F    GA+  +++ + +++ + + +      Y  ++AA+ G+ DGV NTQ++   + +
Sbjct: 567 FVF----GAVVNLLMIVTLMV-WPLNAADTQIFY--VVAAMWGMADGVWNTQINGFWVAL 619

Query: 260 LFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIV----MVVGIC 304
           + +   + AF + + W+   IA+ F +  +++++  L++    +++G+C
Sbjct: 620 VGRQSLQFAFTKYRFWESLGIAIGFALIRHVTVEIYLLITFFMLLLGMC 668

May contribute to coordination of muscle contraction as regulatory subunit of a nonessential potassium channel complex.

Caenorhabditis elegans (taxid: 6239)

>sp|O43934|MFS11_HUMAN UNC93-like protein MFSD11 OS=Homo sapiens GN=MFSD11 PE=2 SV=2

 Score = 84.7 bits (208), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 151/358 (42%), Gaps = 55/358 (15%)

Query: 4   ASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI 63
           AS+++G AA+++W  +G  LT  +  H+          IG  +G FW +  S  F GNL 
Sbjct: 104 ASVFIGIAAAVLWTAQGNCLTINSDEHS----------IGRNSGIFWALLQSSLFFGNLY 153

Query: 64  TLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK---GEKETAD------- 113
                +     S S    +FI    +  +GT+L   +RK + +   GE E++D       
Sbjct: 154 IYFAWQGKTQISESDRRTVFIALTVISLVGTVLFFLIRKPDSENVLGEDESSDDQDMEVN 213

Query: 114 -ASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSG 172
            ++ N  +  V   K    L     MLL+    AY+GL+  F        +    +G + 
Sbjct: 214 ESAQNNLTKAVDAFKKSFKLCVTKEMLLLSITTAYTGLELTFF-----SGVYGTCIGATN 268

Query: 173 VGGA-----MAVYGAFDAICSLAAGRLTTGLPSITF------IVSGGAIAQVVVFLWILI 221
             GA     + + G F  I  +  G L  GL S         +V  G +   + F  I +
Sbjct: 269 KFGAEEKSLIGLSGIFIGIGEILGGSLF-GLLSKNNRFGRNPVVLLGILVHFIAFYLIFL 327

Query: 222 NY------SVTSGVLGTLY-------PLIMAALLGIGDGVLNTQLSALLGILFKHDTEGA 268
           N       +   G   + Y        ++ + LLG+GD   NTQL ++LG L+  D+  A
Sbjct: 328 NMPGDAPIAPVKGTDSSAYIKSSKEVAILCSFLLGLGDSCFNTQLLSILGFLYSEDSAPA 387

Query: 269 FAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVG-ILFLTIQVEKAFYSPR 325
           FA  K  Q    AV FF   Y+ L   L+VMV+       G I F T++ E A +  R
Sbjct: 388 FAIFKFVQSICAAVAFFYSNYLLLHWQLLVMVI---FGFFGTISFFTVEWEAAAFVAR 442

Homo sapiens (taxid: 9606)

>sp|Q5RCQ5|MFS11_PONAB UNC93-like protein MFSD11 OS=Pongo abelii GN=MFSD11 PE=2 SV=1

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 149/358 (41%), Gaps = 55/358 (15%)

Query: 4   ASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLI 63
           AS+++G AA+++W  +G  LT  +  H           IG  +G FW +  S  F GNL 
Sbjct: 104 ASVFIGIAAAVLWTAQGNCLTINSDEH----------TIGRNSGIFWALLQSSLFFGNLY 153

Query: 64  TLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK---GEKETAD------- 113
                +     S S    +FI    +  +GT+L   +RK + +   GE E++D       
Sbjct: 154 VYFAWQGKTQISESDRRTVFIALTVISLVGTVLFFLIRKPDSENVLGEDESSDDQDMEVN 213

Query: 114 -ASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSG 172
            ++ N  +  V   K    L     MLL+    AY+GL+  F        +    +G   
Sbjct: 214 ESAQNNLTKAVDAFKKSFKLCVTKEMLLLSITTAYTGLELTFF-----SGVYGTCIGAIN 268

Query: 173 VGGA-----MAVYGAFDAICSLAAGRLTTGLPSITF------IVSGGAIAQVVVFLWILI 221
             GA     + + G F  I  +  G L  GL S         +V  G +   + F  I +
Sbjct: 269 KFGAEEKSLIGLSGIFIGIGEILGGSLF-GLLSKNNRFGRNPVVLLGILVHFIAFYLIFL 327

Query: 222 NY------SVTSGVLGTLY-------PLIMAALLGIGDGVLNTQLSALLGILFKHDTEGA 268
           N       +   G   + Y        ++ + LLG+GD   NTQL ++LG L+  D+  A
Sbjct: 328 NMPGDAPIAPVKGTDSSAYIKSSKEVAILCSFLLGLGDSCFNTQLLSILGFLYSEDSAPA 387

Query: 269 FAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGIL-FLTIQVEKAFYSPR 325
           FA  K  Q    AV FF   Y+ L   L+VMV+       G L F T++ E A +  R
Sbjct: 388 FAIFKFVQSICAAVAFFYSNYLLLHWQLLVMVI---FGFFGTLSFFTVEWEAAAFVAR 442

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
359481565	444	PREDICTED: UNC93-like protein-like [Viti	1.0	0.734	0.748	1e-136
255581050	439	conserved hypothetical protein [Ricinus	1.0	0.742	0.748	1e-135
30680880	437	UNC93-like protein [Arabidopsis thaliana	0.984	0.734	0.722	1e-128
51971130	437	unnamed protein product [Arabidopsis tha	0.984	0.734	0.719	1e-127
297833712	437	hypothetical protein ARALYDRAFT_317751 [	0.984	0.734	0.728	1e-126
224087399	442	predicted protein [Populus trichocarpa]	0.993	0.733	0.737	1e-125
30680871	464	UNC93-like protein [Arabidopsis thaliana	0.923	0.648	0.740	1e-122
449530173	430	PREDICTED: UNC93-like protein 3-like [Cu	0.972	0.737	0.672	1e-115
449439988	430	PREDICTED: UNC93-like protein 3-like [Cu	0.972	0.737	0.672	1e-115
357510429	444	UNC93-like protein [Medicago truncatula]	0.996	0.731	0.652	1e-113

>gi|359481565|ref|XP_002273762.2| PREDICTED: UNC93-like protein-like [Vitis vinifera] gi|147782828|emb|CAN76819.1| hypothetical protein VITISV_029718 [Vitis vinifera] gi|297741472|emb|CBI32604.3| unnamed protein product [Vitis vinifera]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/326 (74%), Positives = 281/326 (86%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           MVPAS+YLGFAAS+IWVG+GTYLTA A SHA+++ LHEGTVIG+FNGEFWGMFASHQF G
Sbjct: 114 MVPASVYLGFAASVIWVGQGTYLTATARSHANDNNLHEGTVIGNFNGEFWGMFASHQFAG 173

Query: 61  NLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS 120
           NLITLA+LKD   GS  GTTLLFIVFL  +TLGTILM FLR+ ++KGE+ + + +V FYS
Sbjct: 174 NLITLALLKDGTKGSAGGTTLLFIVFLCSMTLGTILMWFLRRRDNKGEEGSLEPAVGFYS 233

Query: 121 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVY 180
           Y VSLSKS+ T L DVRMLLIIPLF YSGLQQAFVWAEFTK IVTPALGVSGVGG+MAV+
Sbjct: 234 YAVSLSKSVITPLFDVRMLLIIPLFVYSGLQQAFVWAEFTKYIVTPALGVSGVGGSMAVF 293

Query: 181 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 240
           GAFDAICSLAAGRLT+GL SIT+IVSGGA AQV+V LWIL+ Y VTSGVLGT+YPL+MAA
Sbjct: 294 GAFDAICSLAAGRLTSGLLSITWIVSGGAFAQVIVLLWILLKYRVTSGVLGTIYPLLMAA 353

Query: 241 LLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMV 300
           + GIGDGV NTQ++AL+GILFK+DTEGAFAQ KVWQ ASI+VVFF+ PYISLQAML+VM+
Sbjct: 354 IWGIGDGVFNTQINALIGILFKNDTEGAFAQYKVWQSASISVVFFLSPYISLQAMLVVML 413

Query: 301 VGICVALVGILFLTIQVEKAFYSPRS 326
             +  A    LFLT +VE+AF S  S
Sbjct: 414 ASLFTAFSAFLFLTHKVERAFSSSTS 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581050|ref|XP_002531341.1| conserved hypothetical protein [Ricinus communis] gi|223529063|gb|EEF31048.1| conserved hypothetical protein [Ricinus communis]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 244/326 (74%), Positives = 284/326 (87%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           MVPASLYLGFAASIIWVG+GTYLT+ A SHA+++ LHEGTVIG+FNGEFWG+FA HQ VG
Sbjct: 114 MVPASLYLGFAASIIWVGQGTYLTSTARSHAADYDLHEGTVIGNFNGEFWGVFACHQLVG 173

Query: 61  NLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS 120
           NLI+LA+L+D  GG+TSGTTLLF VFL ++TLG ILMCFL K   KGE+   D+SV+ YS
Sbjct: 174 NLISLAILRDGTGGTTSGTTLLFFVFLCIVTLGIILMCFLSKRVPKGEEGREDSSVSLYS 233

Query: 121 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVY 180
            L+S SKS+   L D+RMLLIIPL AYSGLQQAFVWAEFTK+IVTPALGVSGVGG+MAVY
Sbjct: 234 SLISKSKSVIAPLLDIRMLLIIPLIAYSGLQQAFVWAEFTKDIVTPALGVSGVGGSMAVY 293

Query: 181 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 240
           GAFDAICSLAAGRLT+GL SIT+IVS GA    +VFLWIL+ YS+TSG+LG LYPL+MAA
Sbjct: 294 GAFDAICSLAAGRLTSGLQSITWIVSAGAFLHAIVFLWILLKYSLTSGILGVLYPLLMAA 353

Query: 241 LLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMV 300
           +LG+GDGVLNTQLSALLGILFKHD EGAFAQLKVWQ ASIAVVFF+ PYISLQ M+++M+
Sbjct: 354 MLGVGDGVLNTQLSALLGILFKHDMEGAFAQLKVWQSASIAVVFFVNPYISLQTMVVIMI 413

Query: 301 VGICVALVGILFLTIQVEKAFYSPRS 326
             + +A+ G LFLT+QVEKAF+SPRS
Sbjct: 414 AALFIAVAGFLFLTLQVEKAFFSPRS 439

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680880|ref|NP_850546.1| UNC93-like protein [Arabidopsis thaliana] gi|51971813|dbj|BAD44571.1| unnamed protein product [Arabidopsis thaliana] gi|222423196|dbj|BAH19575.1| AT3G09470 [Arabidopsis thaliana] gi|332641250|gb|AEE74771.1| UNC93-like protein [Arabidopsis thaliana]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/321 (72%), Positives = 266/321 (82%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           MVPASLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  G
Sbjct: 113 MVPASLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFG 172

Query: 61  NLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS 120
           NLITLA+LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V    
Sbjct: 173 NLITLALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVD 232

Query: 121 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVY 180
            L SL + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVY
Sbjct: 233 SLASLPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVY 292

Query: 181 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 240
           GA DA+CS+ AGR T+GL SITFIVSGGA+AQ  VFLW+L+ Y  TSGVLGT YPLIMAA
Sbjct: 293 GALDAVCSMTAGRFTSGLSSITFIVSGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIMAA 352

Query: 241 LLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMV 300
           +LGIGDG+LNTQ+SALL +LFKHDTEGAFAQLKVWQ A+IA+VFF+ PYISLQAMLIVM+
Sbjct: 353 ILGIGDGILNTQISALLALLFKHDTEGAFAQLKVWQSAAIAIVFFLSPYISLQAMLIVML 412

Query: 301 VGICVALVGILFLTIQVEKAF 321
           V +CV+L   LFL ++VE  F
Sbjct: 413 VMVCVSLFSFLFLALKVENVF 433

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971130|dbj|BAD44257.1| unnamed protein product [Arabidopsis thaliana] gi|51971419|dbj|BAD44374.1| unnamed protein product [Arabidopsis thaliana]

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/321 (71%), Positives = 266/321 (82%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           MVPASLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  G
Sbjct: 113 MVPASLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFG 172

Query: 61  NLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS 120
           NLITLA+LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V    
Sbjct: 173 NLITLALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVD 232

Query: 121 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVY 180
            L SL + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVY
Sbjct: 233 SLASLPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVY 292

Query: 181 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 240
           GA DA+CS+ AGR T+GL SITFIVSGGA+AQ  VFLW+L+ Y  TSGVLGT YPLIMAA
Sbjct: 293 GALDAVCSMTAGRFTSGLSSITFIVSGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIMAA 352

Query: 241 LLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMV 300
           +LGIGDG+LNTQ+SALL +LFKHDTEGAFAQL+VWQ A+IA+VFF+ PYISLQAMLIVM+
Sbjct: 353 ILGIGDGILNTQISALLALLFKHDTEGAFAQLRVWQSAAIAIVFFLSPYISLQAMLIVML 412

Query: 301 VGICVALVGILFLTIQVEKAF 321
           V +CV+L   LFL ++VE  F
Sbjct: 413 VMVCVSLFSFLFLALKVENVF 433

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833712|ref|XP_002884738.1| hypothetical protein ARALYDRAFT_317751 [Arabidopsis lyrata subsp. lyrata] gi|297330578|gb|EFH60997.1| hypothetical protein ARALYDRAFT_317751 [Arabidopsis lyrata subsp. lyrata]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/321 (72%), Positives = 268/321 (83%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           MVPASLYLGFAASIIWVG+GTYLT+ A SHA +H LHEG+VIG FNGEFW MFA HQ  G
Sbjct: 113 MVPASLYLGFAASIIWVGQGTYLTSIARSHAKDHGLHEGSVIGVFNGEFWAMFACHQLFG 172

Query: 61  NLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS 120
           NLITLA+LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  KE   + V    
Sbjct: 173 NLITLALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKEPVGSPVGLVD 232

Query: 121 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVY 180
            LVSL + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVY
Sbjct: 233 SLVSLPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVY 292

Query: 181 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 240
           GA DA+CS+ AGR T+GL SITFI+SGGA+AQ  VFLW+L+ Y  TSGVLGT YPLIMAA
Sbjct: 293 GALDAVCSMTAGRFTSGLSSITFIISGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIMAA 352

Query: 241 LLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMV 300
           +LGIGDG+LNTQ+SALL +LFKHDTEGAFAQLKVWQ A+IA+VFF+ PYISLQAMLIVM+
Sbjct: 353 ILGIGDGILNTQISALLALLFKHDTEGAFAQLKVWQSAAIAIVFFLSPYISLQAMLIVML 412

Query: 301 VGICVALVGILFLTIQVEKAF 321
           V ICV+L+  LFL ++VE  F
Sbjct: 413 VMICVSLLSFLFLALKVENVF 433

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087399|ref|XP_002308151.1| predicted protein [Populus trichocarpa] gi|222854127|gb|EEE91674.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/324 (73%), Positives = 274/324 (84%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           MVPASLYLGFAASIIWVG+GTYLT+ A S A ++ LHEGTVIG+FNGEFWGMFASHQFVG
Sbjct: 118 MVPASLYLGFAASIIWVGQGTYLTSTARSQARDYHLHEGTVIGNFNGEFWGMFASHQFVG 177

Query: 61  NLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS 120
           NLI+LA+L++   GSTSGTTLLF VFL  +TLGTIL+CFL K  D GE+   D+SV+ YS
Sbjct: 178 NLISLAILRNGTEGSTSGTTLLFTVFLCSMTLGTILVCFLSKRVDGGEEGPKDSSVSLYS 237

Query: 121 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVY 180
            L SLSKS+ T L DVRMLLIIPL AYSGLQQAFVWAEFT++I TPALGVSGVGG+MAVY
Sbjct: 238 SLTSLSKSVITPLLDVRMLLIIPLIAYSGLQQAFVWAEFTEKIATPALGVSGVGGSMAVY 297

Query: 181 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 240
           GAFD ICS  AGRLT+G+ SIT+IVS G   Q VVFLWIL+ YS+TSGVLG +YPL+MAA
Sbjct: 298 GAFDTICSFTAGRLTSGIFSITWIVSAGLFLQAVVFLWILLKYSLTSGVLGIVYPLLMAA 357

Query: 241 LLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMV 300
           +LGIGDG +NTQLSALLGILFKHDTEGAFAQLKVWQ ASIAVVFFI PYISLQ M+ +M+
Sbjct: 358 MLGIGDGAINTQLSALLGILFKHDTEGAFAQLKVWQSASIAVVFFINPYISLQVMVEIML 417

Query: 301 VGICVALVGILFLTIQVEKAFYSP 324
             + VA  G L L++++EKAF SP
Sbjct: 418 AALFVAAGGFLVLSLRIEKAFSSP 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680871|ref|NP_187558.2| UNC93-like protein [Arabidopsis thaliana] gi|67462074|sp|Q94AA1.1|UN933_ARATH RecName: Full=UNC93-like protein 3 gi|15146218|gb|AAK83592.1| AT3g09470/F11F8_4 [Arabidopsis thaliana] gi|28460681|gb|AAO43565.1| At3g09470/F11F8_4 [Arabidopsis thaliana] gi|332641249|gb|AEE74770.1| UNC93-like protein [Arabidopsis thaliana]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/301 (74%), Positives = 253/301 (84%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           MVPASLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  G
Sbjct: 113 MVPASLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFG 172

Query: 61  NLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS 120
           NLITLA+LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V    
Sbjct: 173 NLITLALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVD 232

Query: 121 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVY 180
            L SL + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVY
Sbjct: 233 SLASLPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVY 292

Query: 181 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 240
           GA DA+CS+ AGR T+GL SITFIVSGGA+AQ  VFLW+L+ Y  TSGVLGT YPLIMAA
Sbjct: 293 GALDAVCSMTAGRFTSGLSSITFIVSGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIMAA 352

Query: 241 LLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMV 300
           +LGIGDG+LNTQ+SALL +LFKHDTEGAFAQLKVWQ A+IA+VFF+ PYISLQAMLIVM+
Sbjct: 353 ILGIGDGILNTQISALLALLFKHDTEGAFAQLKVWQSAAIAIVFFLSPYISLQAMLIVML 412

Query: 301 V 301
           V
Sbjct: 413 V 413

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449530173|ref|XP_004172070.1| PREDICTED: UNC93-like protein 3-like [Cucumis sativus]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/321 (67%), Positives = 270/321 (84%), Gaps = 4/321 (1%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           MVPASLYLGFAASIIWV +GTYLT+ A +HA  + LHEGTVIG+FNGEFWG+FASHQ +G
Sbjct: 111 MVPASLYLGFAASIIWVAQGTYLTSTARNHARKNGLHEGTVIGNFNGEFWGVFASHQVIG 170

Query: 61  NLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS 120
           N+I+L VLKD+ GGST+GTT+LFI+FL V+TLG +LM FLRKE+ K E+E +  S + +S
Sbjct: 171 NIISLVVLKDEAGGSTNGTTVLFIIFLCVVTLGIVLMWFLRKEDSK-EEEPSLPSASLHS 229

Query: 121 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVY 180
            ++SLSKS+   LAD RM+L IPL AYSGLQ AFVWA+FTK++VTP+LGVSGVGGAMAVY
Sbjct: 230 SILSLSKSVVAPLADRRMILTIPLIAYSGLQAAFVWAKFTKQVVTPSLGVSGVGGAMAVY 289

Query: 181 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 240
           GA DA+CSL AGRLT+GLPSITF+VSGGA+ Q VVF+W+L+  S T   LGT+Y L+++A
Sbjct: 290 GAADAVCSLVAGRLTSGLPSITFLVSGGAVIQAVVFIWLLLGQSET---LGTVYLLLISA 346

Query: 241 LLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMV 300
           +LGIGDGV NTQL+ALLGILFKHDTEGAFAQLKVWQ A+I++VFF  PYIS+  ML++++
Sbjct: 347 VLGIGDGVFNTQLNALLGILFKHDTEGAFAQLKVWQSATISIVFFFSPYISMHTMLVIIL 406

Query: 301 VGICVALVGILFLTIQVEKAF 321
             +C++ V  L LT+ VEK+F
Sbjct: 407 SVLCLSYVAFLTLTVWVEKSF 427

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439988|ref|XP_004137767.1| PREDICTED: UNC93-like protein 3-like [Cucumis sativus]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/321 (67%), Positives = 270/321 (84%), Gaps = 4/321 (1%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           MVPASLYLGFAASIIWV +GTYLT+ A +HA  + LHEGTVIG+FNGEFWG+FASHQ +G
Sbjct: 111 MVPASLYLGFAASIIWVAQGTYLTSTARNHARKNGLHEGTVIGNFNGEFWGVFASHQVIG 170

Query: 61  NLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS 120
           N+I+L VLKD+ GGST+GTT+LFI+FL V+TLG +LM FLRKE+ K E+E +  S + +S
Sbjct: 171 NIISLVVLKDEAGGSTNGTTVLFIIFLCVVTLGIVLMWFLRKEDSK-EEEPSLPSASLHS 229

Query: 121 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVY 180
            ++SLSKS+   LAD RM+L IPL AYSGLQ AFVWA+FTK++VTP+LGVSGVGGAMAVY
Sbjct: 230 SILSLSKSVVAPLADRRMILTIPLIAYSGLQAAFVWAKFTKQVVTPSLGVSGVGGAMAVY 289

Query: 181 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 240
           GA DA+CSL AGRLT+GLPSITF+VSGGA+ Q VVF+W+L+  S T   LGT+Y L+++A
Sbjct: 290 GAADAVCSLVAGRLTSGLPSITFLVSGGAVIQAVVFIWLLLGQSET---LGTVYLLLISA 346

Query: 241 LLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMV 300
           +LGIGDGV NTQL+ALLGILFKHDTEGAFAQLKVWQ A+I++VFF  PYIS+  ML++++
Sbjct: 347 VLGIGDGVFNTQLNALLGILFKHDTEGAFAQLKVWQSATISIVFFFSPYISMHTMLVIIL 406

Query: 301 VGICVALVGILFLTIQVEKAF 321
             +C++ V  L LT+ VEK+F
Sbjct: 407 SVLCLSYVAFLTLTVGVEKSF 427

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510429|ref|XP_003625503.1| UNC93-like protein [Medicago truncatula] gi|355500518|gb|AES81721.1| UNC93-like protein [Medicago truncatula]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/328 (65%), Positives = 259/328 (78%), Gaps = 3/328 (0%)

Query: 1   MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
           +VPAS+YLGF ASIIWVG+GTYLT+ A SHA ++ LHEG VIG FNGEFW ++A HQF+G
Sbjct: 116 LVPASVYLGFCASIIWVGQGTYLTSTAHSHAIDNNLHEGAVIGDFNGEFWAVYALHQFIG 175

Query: 61  NLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKE--EDKGEKETADASVNF 118
           NLIT A+L D +GGST+GTTLLF+VFL V+T G ILM FL K     K E + ++A V  
Sbjct: 176 NLITFALLSDGQGGSTNGTTLLFVVFLFVMTFGAILMFFLHKRIGNSKEEYKNSEADVVE 235

Query: 119 YSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMA 178
              L SL KS+T+ L+D +MLLIIPL AYSGLQQAFVWAEFTK +VTPA+GVSGVG AMA
Sbjct: 236 SKSLKSLCKSLTSALSDAKMLLIIPLMAYSGLQQAFVWAEFTKFVVTPAIGVSGVGIAMA 295

Query: 179 VYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM 238
            YGAFD ICSLAAGRLT+GL SIT IVS GA AQ V  + +L+N+S++SG LGT Y L +
Sbjct: 296 AYGAFDGICSLAAGRLTSGLTSITSIVSFGAFAQAVALILLLLNFSISSGFLGTSYILFL 355

Query: 239 AALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIV 298
           AALLGIGDGVL TQL+ALLGILFKHD EGAFAQLK+WQ A+IAVVFF+ PYIS QA+ I+
Sbjct: 356 AALLGIGDGVLMTQLNALLGILFKHDMEGAFAQLKIWQSATIAVVFFLAPYISFQAVTII 415

Query: 299 MVVGICVALVGILFLTIQVEKAFYSPRS 326
           M+V +C++    L+L ++V  A  SP +
Sbjct: 416 MLVLLCLSFCSFLWLALKVGNA-SSPST 442

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
TAIR|locus:2074929	464	AT3G09470 "AT3G09470" [Arabido	0.923	0.648	0.740	1.9e-115
UNIPROTKB|Q86WB7	457	UNC93A "Protein unc-93 homolog	0.668	0.477	0.309	2.6e-29
FB|FBgn0027556	538	CG4928 [Drosophila melanogaste	0.708	0.429	0.257	4.5e-29
UNIPROTKB|A2VE54	457	UNC93A "Protein unc-93 homolog	0.687	0.490	0.323	5.9e-29
UNIPROTKB|F1MB34	455	F1MB34 "Uncharacterized protei	0.674	0.483	0.317	7.4e-29
ZFIN|ZDB-GENE-041014-304	467	unc93a "unc-93 homolog A (C. e	0.708	0.494	0.317	8.5e-29
UNIPROTKB|E2QT36	456	UNC93A "Uncharacterized protei	0.641	0.458	0.308	3.5e-27
MGI|MGI:1933250	458	Unc93a "unc-93 homolog A (C. e	0.677	0.482	0.300	1.8e-24
WB|WBGene00006822	705	unc-93 [Caenorhabditis elegans	0.763	0.353	0.251	3.8e-23
UNIPROTKB|Q93380	705	unc-93 "Putative potassium cha	0.763	0.353	0.251	3.8e-23

TAIR|locus:2074929 AT3G09470 "AT3G09470" [Arabidopsis thaliana (taxid:3702)]

 Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
 Identities = 223/301 (74%), Positives = 253/301 (84%)

Query:     1 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVG 60
             MVPASLYLGFAASIIWVG+GTYLT+ A SHA++H LHEG+VIG FNGEFW MFA HQ  G
Sbjct:   113 MVPASLYLGFAASIIWVGQGTYLTSIARSHATDHGLHEGSVIGVFNGEFWAMFACHQLFG 172

Query:    61 NLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYS 120
             NLITLA+LKD K GSTSGTTLL +VFL  +TLGTILM F+RK + +  K    + V    
Sbjct:   173 NLITLALLKDGKEGSTSGTTLLMLVFLFSMTLGTILMFFIRKIDGEDGKGPVGSPVGLVD 232

Query:   121 YLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVY 180
              L SL + I T L D+RMLLI+PL AYSGLQQAFVWAEFTKEIVTPA+GVSGVGGAMAVY
Sbjct:   233 SLASLPRMIITPLLDIRMLLIVPLLAYSGLQQAFVWAEFTKEIVTPAIGVSGVGGAMAVY 292

Query:   181 GAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA 240
             GA DA+CS+ AGR T+GL SITFIVSGGA+AQ  VFLW+L+ Y  TSGVLGT YPLIMAA
Sbjct:   293 GALDAVCSMTAGRFTSGLSSITFIVSGGAVAQASVFLWLLLGYRQTSGVLGTAYPLIMAA 352

Query:   241 LLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMV 300
             +LGIGDG+LNTQ+SALL +LFKHDTEGAFAQLKVWQ A+IA+VFF+ PYISLQAMLIVM+
Sbjct:   353 ILGIGDGILNTQISALLALLFKHDTEGAFAQLKVWQSAAIAIVFFLSPYISLQAMLIVML 412

Query:   301 V 301
             V
Sbjct:   413 V 413

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q86WB7 UNC93A "Protein unc-93 homolog A" [Homo sapiens (taxid:9606)]

 Score = 257 (95.5 bits), Expect = 2.6e-29, Sum P(2) = 2.6e-29
 Identities = 72/233 (30%), Positives = 124/233 (53%)

Query:    80 TLLFIVFLGVITLGTILMC-FLRKEED-KGEKETADASVNFYSYLVSLSKSITTLLADVR 137
             TLL I + G   L  +++  FL+   D + E E    SV F+S L+S  K    L  D R
Sbjct:   202 TLLGI-YTGSGVLAVLMIAAFLQPIRDVQRESEGEKKSVPFWSTLLSTFK----LYRDKR 256

Query:   138 MLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLT-- 195
             + L+I L  YSGLQQ F+ +E+T+  VT  LG+  VG  M  + A DA+CS+  G+++  
Sbjct:   257 LCLLILLPLYSGLQQGFLSSEYTRSYVTCTLGIQFVGYVMICFSATDALCSVLYGKVSQY 316

Query:   196 TGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSA 255
             TG  ++ +++  GA+  V   + +L+ +   +  L   +  + + L G+ D V  TQ +A
Sbjct:   317 TGR-AVLYVL--GAVTHVSCMIALLL-WRPRADHLAVFF--VFSGLWGVADAVWQTQNNA 370

Query:   256 LLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALV 308
             L G+LF+   E AFA  ++W+     + F    ++ +   L +++  + + +V
Sbjct:   371 LYGVLFEKSKEAAFANYRLWEALGFVIAFGYSMFLCVHVKLYILLGVLSLTMV 423

GO:0005886 "plasma membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0027556 CG4928 [Drosophila melanogaster (taxid:7227)]

 Score = 245 (91.3 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
 Identities = 61/237 (25%), Positives = 116/237 (48%)

Query:    84 IVFLGVITLGT-ILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLII 142
             +++L  I     I+  FL   +  GEK     S    S L  LS +   +     + L+I
Sbjct:   249 MIYLSCIVAAVCIIAFFLDPLKRYGEKRKGSNSAAELSGLQLLSATFRQMKKP-NLQLLI 307

Query:   143 PLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSIT 202
             P+  + G++QAF+ A+FT+  V  ALGV+ +G  M  +G  +A+CS+  G +   +    
Sbjct:   308 PITVFIGMEQAFIGADFTQAYVACALGVNKIGFVMICFGVVNALCSILFGSVMKYIGRTP 367

Query:   203 FIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFK 262
              IV G  +   ++ + +    +  + ++   Y   M+ L G+GD V  TQ++ L G+LF+
Sbjct:   368 IIVLGAVVHFTLITVELFWRPNPDNPII--FYA--MSGLWGVGDAVWQTQINGLYGLLFR 423

Query:   263 HDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVEK 319
              + E AF+  ++W+ A   + +     +  Q  L +++  + +  +G + + I   K
Sbjct:   424 RNKEAAFSNYRLWESAGFVIAYAYATTLCTQMKLYILLAVLTLGCIGYVIVEILYRK 480

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

UNIPROTKB|A2VE54 UNC93A "Protein unc-93 homolog A" [Bos taurus (taxid:9913)]

 Score = 254 (94.5 bits), Expect = 5.9e-29, Sum P(2) = 5.9e-29
 Identities = 78/241 (32%), Positives = 122/241 (50%)

Query:    80 TLLFIVFLGVITLGTILMC-FLRKEED-KGEKETADASVNFYSYLVSLSKSITTLLADVR 137
             TLL I + G   L  +LM  FL    D + E E    +  F+S L+S  K    LL D R
Sbjct:   202 TLLGI-YTGCGFLAVLLMAVFLEPVRDAQPEGEDEKQAPPFWSTLLSTFK----LLRDKR 256

Query:   138 MLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLT-- 195
             + L+I L   SG +QAF+  ++T+   T ALG+  VG  M  +GA DA+CS+  GRL   
Sbjct:   257 LRLLILLPMLSGFEQAFLSGDYTRSYTTCALGIQFVGYVMICFGAADALCSVLFGRLARH 316

Query:   196 TGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSA 255
             TG    T + + GA+ Q+   + +L+ +      L   +  +  +L G+ D V  TQ +A
Sbjct:   317 TGR---TVLFALGAVTQLACIIALLL-WKPHPSQLPVFF--VFPSLWGMADAVWQTQNNA 370

Query:   256 LLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVM--VVGICVALVGILFL 313
             L G+LF+ + E AFA  ++W+     + F    ++ +   L V+  V+   +A  G +  
Sbjct:   371 LFGVLFEKNKEAAFANYRLWEALGFVIAFGYSTFLCVSVKLYVLLGVLSAAMAAYGAVEY 430

Query:   314 T 314
             T
Sbjct:   431 T 431

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MB34 F1MB34 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 253 (94.1 bits), Expect = 7.4e-29, Sum P(2) = 7.4e-29
 Identities = 75/236 (31%), Positives = 119/236 (50%)

Query:    85 VFLGVITLGTILMC-FLRKEED-KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLII 142
             +F G   L  +LM  FL    D + E E    +  F+S L+S  K    LL D R+ L+I
Sbjct:   204 LFTGCGFLAVLLMAVFLEPVRDAQPEGEDEKQAPPFWSTLLSTFK----LLRDKRLRLLI 259

Query:   143 PLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLT--TGLPS 200
              L   SG +QAF+  ++T+   T ALG+  VG  M  +GA DA+CS+  GRL   TG   
Sbjct:   260 LLPMLSGFEQAFLSGDYTRSYTTCALGIQFVGYVMICFGAADALCSVLFGRLARHTGR-- 317

Query:   201 ITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGIL 260
              T + + GA+ Q+   + +L+ +      L   +  +  +L G+ D V  TQ +AL G+L
Sbjct:   318 -TVLFALGAVTQLACIIALLL-WKPHPSQLPVFF--VFPSLWGMADAVWQTQNNALFGVL 373

Query:   261 FKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVM--VVGICVALVGILFLT 314
             F+ + E AFA  ++W+     + F    ++ +   L V+  V+   +A  G +  T
Sbjct:   374 FEKNKEAAFANYRLWEALGFVIAFGYSTFLCVSVKLYVLLGVLSAAMAAYGAVEYT 429

GO:0005886 "plasma membrane" evidence=IEA

ZFIN|ZDB-GENE-041014-304 unc93a "unc-93 homolog A (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 266 (98.7 bits), Expect = 8.5e-29, Sum P(2) = 8.5e-29
 Identities = 78/246 (31%), Positives = 120/246 (48%)

Query:    68 LKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSK 127
             L D   G   G  LL I+F+ V  L  I      ++E K E  +   + +F+   ++  K
Sbjct:   199 LVDTLLGCYIGVGLLAIIFVAVF-LDNI-----DRDEAK-EFRSTKGNKSFWDTFLATFK 251

Query:   128 SITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIC 187
                 LL D R+LL+IPL  YSG +Q+F+  E+TK  VT ALG+  VG  M  + A +++C
Sbjct:   252 ----LLRDPRLLLLIPLTMYSGFEQSFLSGEYTKNYVTCALGIHNVGFVMICFAASNSLC 307

Query:   188 SLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDG 247
             S A GRL      I       AI  +  FL +L  +      L   +  +  AL G+ D 
Sbjct:   308 SFAFGRLAQYTGRIALFCLAAAI-NLGSFLGLLY-WKPHPDQLAIFF--VFPALWGMADA 363

Query:   248 VLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVAL 307
             V  TQ +AL GILF  + E AFA  ++W+     + F    +I L   + + +  + + +
Sbjct:   364 VWQTQTNALYGILFAKNKEAAFANYRMWESLGFVIAFAYSTFICLSTKIYIALAVLALTM 423

Query:   308 VGILFL 313
             V  L++
Sbjct:   424 VTYLYV 429

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|E2QT36 UNC93A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 242 (90.2 bits), Expect = 3.5e-27, Sum P(2) = 3.5e-27
 Identities = 70/227 (30%), Positives = 118/227 (51%)

Query:    80 TLLFIVFLGVITLGTILMC-FLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRM 138
             TLL I + G   L  +L+  FL   +D  +K   +   +F+S L+S  K    LL D R+
Sbjct:   202 TLLGI-YTGSGVLAVLLIALFLEPIKDAQQKSEGEKKSSFWSTLLSTFK----LLRDKRL 256

Query:   139 LLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLT--T 196
              L++ L  YSG +QAF+  ++T+   T ALG+  VG  M  + A +++CS+  GRL+  T
Sbjct:   257 RLLVLLPMYSGFEQAFLAGDYTRSYTTCALGIHFVGYVMICFSATNSLCSVLYGRLSQYT 316

Query:   197 GLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSAL 256
             G  ++  +   GA+  +   + +L+ +      L   +  + + L G+ D V  TQ + L
Sbjct:   317 GRKALYGL---GAVTHLSCIVALLL-WKPHPDQLAVFF--VFSGLWGVADAVWQTQNNVL 370

Query:   257 LGILFKHDTEGAFAQLKVWQCASIAVVF----FIGPYISLQAMLIVM 299
              G+LF+ + E AFA  ++W+     + F    F+  YI L  +L V+
Sbjct:   371 YGVLFEKNKEAAFANYRLWEALGFVIAFGYSTFLCVYIKLYILLGVL 417

GO:0005886 "plasma membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1933250 Unc93a "unc-93 homolog A (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 233 (87.1 bits), Expect = 1.8e-24, Sum P(2) = 1.8e-24
 Identities = 70/233 (30%), Positives = 114/233 (48%)

Query:    80 TLLFIVFLGVITLGTILMC-FLRKEEDK--GEKETADASVNFYSYLVSLSKSITTLLADV 136
             TLL I + G   L  +L+  FL   EDK   E E        +S L+S       L  D 
Sbjct:   202 TLLGI-YTGCGVLAILLVAVFLESLEDKLENEGERRPRPPPLWSTLLSTFM----LFRDK 256

Query:   137 RMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTT 196
             R+ L++ L  YSG QQ F+  E+TK  VT ALG+  VG  M  + A  A+CSL  G+++ 
Sbjct:   257 RLCLLMFLPLYSGFQQEFLSGEYTKSYVTCALGIHFVGYVMICFSAMTALCSLLYGKISK 316

Query:   197 GLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSAL 256
                       G AI    + +++L  +   +  L   +  +++ L G+ D V  TQ +AL
Sbjct:   317 YTGRAALYALGAAIHFSCIVVFLL--WHPNTNQLPVFF--VLSGLWGMSDAVWQTQNNAL 372

Query:   257 LGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVG 309
              G+LF+ + E AFA  ++ +     + F    ++ +   L +++  + +A+VG
Sbjct:   373 FGVLFEENKEPAFANYRLGEAIGFVIAFGYSSFLCVSTKLYILLGVLSLAMVG 425

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00006822 unc-93 [Caenorhabditis elegans (taxid:6239)]

 Score = 220 (82.5 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
 Identities = 67/266 (25%), Positives = 132/266 (49%)

Query:    56 HQFVGNLITLAVLKDDKGGSTSGTTLLFI--VFLG-VITLGTILMCFLRK-EEDKGEKET 111
             +QF  NL  L  L +           + +   +L  VI  G I+  FL    +D   ++ 
Sbjct:   421 YQFPKNLSDLTELAESNLARPPQKVYVAVCLAYLACVIISGMIMSMFLNALAKDARNRKM 480

Query:   112 ADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS 171
             A     F S +  L   +   L +++ +L++PL  ++GL+QAF+   +TK  V   LG+ 
Sbjct:   481 AQ---KFNSEIFYL---MLKHLINIKFMLLVPLTIFNGLEQAFLVGVYTKAFVGCGLGIW 534

Query:   172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLG 231
              +G  MA +G  DA+CSL  G L      +   V G A+  +++ + +++ + + +    
Sbjct:   535 QIGFVMACFGISDAVCSLVFGPLIKLFGRMPLFVFG-AVVNLLMIVTLMV-WPLNAADTQ 592

Query:   232 TLYPLIMAALLGIGDGVLNTQLSAL-LGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI 290
               Y  ++AA+ G+ DGV NTQ++   + ++ +   + AF + + W+   IA+ F +  ++
Sbjct:   593 IFY--VVAAMWGMADGVWNTQINGFWVALVGRQSLQFAFTKYRFWESLGIAIGFALIRHV 650

Query:   291 SLQAMLIVMVVGICVALVGILFLTIQ 316
             +++  L++    + + + G  FL I+
Sbjct:   651 TVEIYLLITFFMLLLGMCG--FLAIE 674

GO:0016021 "integral to membrane" evidence=IEA

GO:0016477 "cell migration" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0055120 "striated muscle dense body" evidence=IDA

UNIPROTKB|Q93380 unc-93 "Putative potassium channel regulatory protein unc-93" [Caenorhabditis elegans (taxid:6239)]

 Score = 220 (82.5 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
 Identities = 67/266 (25%), Positives = 132/266 (49%)

Query:    56 HQFVGNLITLAVLKDDKGGSTSGTTLLFI--VFLG-VITLGTILMCFLRK-EEDKGEKET 111
             +QF  NL  L  L +           + +   +L  VI  G I+  FL    +D   ++ 
Sbjct:   421 YQFPKNLSDLTELAESNLARPPQKVYVAVCLAYLACVIISGMIMSMFLNALAKDARNRKM 480

Query:   112 ADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS 171
             A     F S +  L   +   L +++ +L++PL  ++GL+QAF+   +TK  V   LG+ 
Sbjct:   481 AQ---KFNSEIFYL---MLKHLINIKFMLLVPLTIFNGLEQAFLVGVYTKAFVGCGLGIW 534

Query:   172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLG 231
              +G  MA +G  DA+CSL  G L      +   V G A+  +++ + +++ + + +    
Sbjct:   535 QIGFVMACFGISDAVCSLVFGPLIKLFGRMPLFVFG-AVVNLLMIVTLMV-WPLNAADTQ 592

Query:   232 TLYPLIMAALLGIGDGVLNTQLSAL-LGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI 290
               Y  ++AA+ G+ DGV NTQ++   + ++ +   + AF + + W+   IA+ F +  ++
Sbjct:   593 IFY--VVAAMWGMADGVWNTQINGFWVALVGRQSLQFAFTKYRFWESLGIAIGFALIRHV 650

Query:   291 SLQAMLIVMVVGICVALVGILFLTIQ 316
             +++  L++    + + + G  FL I+
Sbjct:   651 TVEIYLLITFFMLLLGMCG--FLAIE 674

GO:0015459 "potassium channel regulator activity" evidence=IGI

GO:0043266 "regulation of potassium ion transport" evidence=IGI

GO:0006937 "regulation of muscle contraction" evidence=IMP

GO:0005887 "integral to plasma membrane" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023047001 SubName- Full=Putative uncharacterized protein (Chromosome chr8 scaffold_29, whole genome shotgun sequence); (444 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
KOG3098	461	consensus Uncharacterized conserved protein [Funct	100.0
KOG3097	390	consensus Predicted membrane protein [Function unk	99.93
PRK09952	438	shikimate transporter; Provisional	99.8
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.8
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.79
PRK10642	490	proline/glycine betaine transporter; Provisional	99.75
TIGR00900	365	2A0121 H+ Antiporter protein.	99.74
PRK15075	434	citrate-proton symporter; Provisional	99.73
PRK03545	390	putative arabinose transporter; Provisional	99.72
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.71
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.7
PRK10489	417	enterobactin exporter EntS; Provisional	99.7
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.69
TIGR00893	399	2A0114 d-galactonate transporter.	99.68
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.68
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.66
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.65
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.65
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.65
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.64
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.64
PRK12307	426	putative sialic acid transporter; Provisional	99.64
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.64
PRK10091	382	MFS transport protein AraJ; Provisional	99.63
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.63
PRK05122	399	major facilitator superfamily transporter; Provisi	99.63
PRK09874	408	drug efflux system protein MdtG; Provisional	99.62
PRK03699	394	putative transporter; Provisional	99.62
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.62
PRK11663	434	regulatory protein UhpC; Provisional	99.61
TIGR00898	505	2A0119 cation transport protein.	99.61
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.61
TIGR00891	405	2A0112 putative sialic acid transporter.	99.61
TIGR00901	356	2A0125 AmpG-related permease.	99.6
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.6
PRK03633	381	putative MFS family transporter protein; Provision	99.59
PRK11902	402	ampG muropeptide transporter; Reviewed	99.59
PRK10133	438	L-fucose transporter; Provisional	99.59
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.58
PRK11010	491	ampG muropeptide transporter; Validated	99.58
PRK12382	392	putative transporter; Provisional	99.58
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.58
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.58
TIGR00895	398	2A0115 benzoate transport.	99.58
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.58
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.58
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.57
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.57
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.57
PRK10504	471	putative transporter; Provisional	99.56
PRK09705	393	cynX putative cyanate transporter; Provisional	99.55
PRK11043	401	putative transporter; Provisional	99.55
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.55
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.53
PRK03893	496	putative sialic acid transporter; Provisional	99.53
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.53
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.53
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.53
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.52
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.52
PLN00028	476	nitrate transmembrane transporter; Provisional	99.51
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.51
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.51
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.51
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.5
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.5
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.5
PRK10054	395	putative transporter; Provisional	99.5
PRK09528	420	lacY galactoside permease; Reviewed	99.5
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.49
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.48
PRK15011	393	sugar efflux transporter B; Provisional	99.48
KOG0569	485	consensus Permease of the major facilitator superf	99.48
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.47
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.47
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.44
KOG2532	466	consensus Permease of the major facilitator superf	99.43
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.41
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.4
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.39
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.39
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.39
KOG2533	495	consensus Permease of the major facilitator superf	99.34
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.33
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.32
PRK09669	444	putative symporter YagG; Provisional	99.3
PF13347	428	MFS_2: MFS/sugar transport protein	99.27
PRK10429	473	melibiose:sodium symporter; Provisional	99.26
TIGR00805	633	oat sodium-independent organic anion transporter.	99.25
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.24
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.16
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.16
PRK11462	460	putative transporter; Provisional	99.14
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.12
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.11
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.11
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.1
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	99.1
KOG0254	513	consensus Predicted transporter (major facilitator	99.09
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.08
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.04
PRK09848	448	glucuronide transporter; Provisional	99.04
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.95
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.94
PRK10054	395	putative transporter; Provisional	98.94
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.93
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.93
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.92
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.92
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.91
COG2211	467	MelB Na+/melibiose symporter and related transport	98.89
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.88
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.86
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.85
PRK05122	399	major facilitator superfamily transporter; Provisi	98.84
PRK12382	392	putative transporter; Provisional	98.8
TIGR00900	365	2A0121 H+ Antiporter protein.	98.79
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.75
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.75
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.74
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.73
PRK03545	390	putative arabinose transporter; Provisional	98.72
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.71
PRK09705	393	cynX putative cyanate transporter; Provisional	98.71
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.71
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.7
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.69
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.68
PRK10091	382	MFS transport protein AraJ; Provisional	98.67
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.67
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.67
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.66
TIGR00891	405	2A0112 putative sialic acid transporter.	98.65
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.65
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.65
KOG2615	451	consensus Permease of the major facilitator superf	98.64
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.64
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	98.63
PRK10489	417	enterobactin exporter EntS; Provisional	98.62
PRK03633	381	putative MFS family transporter protein; Provision	98.62
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.62
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.61
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.6
TIGR00895	398	2A0115 benzoate transport.	98.6
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.6
PTZ00207	591	hypothetical protein; Provisional	98.56
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.56
PRK11663	434	regulatory protein UhpC; Provisional	98.56
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.55
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.55
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.54
PRK10133	438	L-fucose transporter; Provisional	98.54
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.53
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.53
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.52
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.51
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.51
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.5
PRK10504	471	putative transporter; Provisional	98.5
TIGR00893	399	2A0114 d-galactonate transporter.	98.49
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.47
PRK12307	426	putative sialic acid transporter; Provisional	98.46
PRK03699	394	putative transporter; Provisional	98.46
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.45
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.45
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.45
PRK11043	401	putative transporter; Provisional	98.45
KOG2563	480	consensus Permease of the major facilitator superf	98.45
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.44
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.42
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.41
KOG3626	735	consensus Organic anion transporter [Secondary met	98.39
PRK11902	402	ampG muropeptide transporter; Reviewed	98.37
PRK09528	420	lacY galactoside permease; Reviewed	98.37
PRK09874	408	drug efflux system protein MdtG; Provisional	98.37
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.35
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.35
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.35
PRK03893	496	putative sialic acid transporter; Provisional	98.34
PRK11010	491	ampG muropeptide transporter; Validated	98.34
PTZ00207	591	hypothetical protein; Provisional	98.34
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.33
PLN00028	476	nitrate transmembrane transporter; Provisional	98.32
TIGR00898	505	2A0119 cation transport protein.	98.31
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.28
KOG2615	451	consensus Permease of the major facilitator superf	98.24
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.24
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.23
PRK10429	473	melibiose:sodium symporter; Provisional	98.22
PRK11462	460	putative transporter; Provisional	98.21
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.21
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.21
PRK09848	448	glucuronide transporter; Provisional	98.21
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.18
PRK15011	393	sugar efflux transporter B; Provisional	98.18
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.17
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.16
TIGR00901	356	2A0125 AmpG-related permease.	98.13
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	98.1
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.08
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	98.06
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.06
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.05
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.05
PRK09669	444	putative symporter YagG; Provisional	98.05
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	98.03
PF13347	428	MFS_2: MFS/sugar transport protein	98.02
COG2211	467	MelB Na+/melibiose symporter and related transport	97.98
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	97.98
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.98
PRK09952	438	shikimate transporter; Provisional	97.94
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	97.91
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.9
KOG3764	464	consensus Vesicular amine transporter [Intracellul	97.89
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.88
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.86
PRK10642	490	proline/glycine betaine transporter; Provisional	97.82
KOG0254	513	consensus Predicted transporter (major facilitator	97.82
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.75
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.73
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.72
TIGR00805	633	oat sodium-independent organic anion transporter.	97.7
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.69
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.64
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.63
PRK15075	434	citrate-proton symporter; Provisional	97.61
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.56
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.53
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.47
KOG3810	433	consensus Micronutrient transporters (folate trans	97.41
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.41
KOG2532	466	consensus Permease of the major facilitator superf	97.33
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.32
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	97.32
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	97.29
KOG0569	485	consensus Permease of the major facilitator superf	97.25
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.16
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	97.02
KOG3762	618	consensus Predicted transporter [General function	97.0
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.95
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.94
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	96.85
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	96.8
KOG2533	495	consensus Permease of the major facilitator superf	96.79
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	96.71
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.68
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	96.58
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.32
KOG2563	480	consensus Permease of the major facilitator superf	96.27
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.24
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.02
KOG0637	498	consensus Sucrose transporter and related proteins	95.86
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.86
PF12832	77	MFS_1_like: MFS_1 like family	95.82
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	95.12
KOG2816	463	consensus Predicted transporter ADD1 (major facili	95.04
COG0477	338	ProP Permeases of the major facilitator superfamil	94.97
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	94.87
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	94.51
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	93.91
COG2270	438	Permeases of the major facilitator superfamily [Ge	93.69
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	93.48
KOG3762	618	consensus Predicted transporter [General function	92.83
COG3202	509	ATP/ADP translocase [Energy production and convers	92.17
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	91.65
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.0
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	90.69
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	90.08
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	86.08
KOG3098	461	consensus Uncharacterized conserved protein [Funct	85.74
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	82.47
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	82.39

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.4e-33  Score=261.03  Aligned_cols=299  Identities=26%  Similarity=0.387  Sum_probs=230.1

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCC---CCCCCC
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK---GGSTSG   78 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~---~~~~~~   78 (326)
                      +.++++.|+|++.+|++||.|++||+++          ++++|+.+++|++.++++++|+.+.+.+.+..+   ......
T Consensus       106 yfssallG~Gaallw~GqG~ylt~~st~----------~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~  175 (461)
T KOG3098|consen  106 YFSSALLGFGAALLWTGQGGYLTSNSTR----------ETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGT  175 (461)
T ss_pred             HHHHHHhhhhHHheecccceehhhcCCh----------hhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccch
Confidence            5789999999999999999999999995          599999999999999999999999988776432   111111


Q ss_pred             -------------chhhHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHH
Q 020441           79 -------------TTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLF  145 (326)
Q Consensus        79 -------------~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~  145 (326)
                                   .+.+|.++..+..++++...++|.++.+.+.+   .  .+ .+.++++|.+.+++++||+++++|.+
T Consensus       176 ~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~~~---~--~~-~~~~~~l~~~~~l~~~~~ml~L~~~f  249 (461)
T KOG3098|consen  176 RRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKDVVNCKS---S--SE-TSFSELLKLTFKLLKTPKMLLLFPFF  249 (461)
T ss_pred             hhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccchhhhhh---h--cc-ccHHHHHHHHHHHhcCHhHHHHHHHH
Confidence                         23344444444555555555555443332211   1  11 47889999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccccc-cccccch---hhHHHHHHHHHHHHHHHhhhhhhcc---CCCChhhHHHHHHHHHHHHHHH
Q 020441          146 AYSGLQQAFVWAEFTKEIV-TPALGVS---GVGGAMAVYGAFDAICSLAAGRLTT---GLPSITFIVSGGAIAQVVVFLW  218 (326)
Q Consensus       146 ~~~g~~~~f~~~~~~~~~~-~~~lg~~---~~~~~~~~~gi~~~i~~~~~G~l~d---~~g~~~~i~~~g~i~~~~~~~~  218 (326)
                      +++|++.+|+.++|++.+. ++..+..   ..++.++..|+++.+++...+.+.|   |+|++ +++..+.++|....++
T Consensus       250 ~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~-~~~~~~~~~~~~~~~l  328 (461)
T KOG3098|consen  250 FYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRK-PTVLIGIIIHLIGFLL  328 (461)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccC-cchhHHHHHHHHHHHH
Confidence            9999999999999987553 3344432   4566678889999998888887765   46677 5888899999877766


Q ss_pred             HHhcccCCCCC-----------cchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHh
Q 020441          219 ILINYSVTSGV-----------LGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIG  287 (326)
Q Consensus       219 ~~l~~~~~~~~-----------~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~  287 (326)
                      ..++.+.|.|.           ......++++++.|++|+++|++.+++++.++|+++..+|+++++.|++++|++++.+
T Consensus       329 i~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~~  408 (461)
T KOG3098|consen  329 IHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFFS  408 (461)
T ss_pred             HhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhh
Confidence            66666655432           1124678999999999999999999999999999998899999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020441          288 PYISLQAMLIVMVVGICVALVGILFLTIQV  317 (326)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (326)
                      +......+...+.+.+.++...++.+.++.
T Consensus       409 ~~~~l~~~~l~~~i~~~i~~~~~~~~~~~~  438 (461)
T KOG3098|consen  409 PYLLLYIYTLGLPIFCVIATTIFFIVAERT  438 (461)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988877777666666666666655554433

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=99.93  E-value=1e-25  Score=195.50  Aligned_cols=244  Identities=33%  Similarity=0.480  Sum_probs=186.6

Q ss_pred             CchhHHhhhhhhhhhhccccceecccchhhhhhc-CCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhc---C------
Q 020441            1 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNH-KLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK---D------   70 (326)
Q Consensus         1 li~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~-~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~---~------   70 (326)
                      |+|+++.+|+|+|++|+++++|+|+.+.+|+..+ +.+.+..+.+++|.||.+++..+.+||++++.+..   +      
T Consensus       113 lVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~~~~~~~~~~s  192 (390)
T KOG3097|consen  113 LVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMTLFLHGALSGS  192 (390)
T ss_pred             hccHHHhhccccccccccCcceecHHHHHHHHhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence            6899999999999999999999999999999877 45567778999999999999999999999987542   1      


Q ss_pred             CCCCCCC-------------C---------chhhHHHHHHHHHHHHHHHH-HccCCccccccchhhhchhhhhHHHHHHH
Q 020441           71 DKGGSTS-------------G---------TTLLFIVFLGVITLGTILMC-FLRKEEDKGEKETADASVNFYSYLVSLSK  127 (326)
Q Consensus        71 ~~~~~~~-------------~---------~~~~f~~~~~i~~l~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~k  127 (326)
                      +++.+++             +         .-.+-.+|+.+++++..++. ++..-.+..++.      -.+.+..+.+.
T Consensus       193 n~t~~~~CG~~f~~~g~~a~~nlt~p~~~~~lvls~i~L~c~via~~~~~~~~~~l~r~~~~r------~~~~~~l~i~~  266 (390)
T KOG3097|consen  193 NLTFSVECGANFCGSGDKAEGNLTLPPSYVILVLSLIFLPCMVIAVLIMLFFLGALKRYGEKR------LASVSGLNIFQ  266 (390)
T ss_pred             cceeeeecccccCCccccccCCccCCCCCceEEeeHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhcccccchHH
Confidence            1111111             1         01122344445555554433 332111111100      11234456677


Q ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHH
Q 020441          128 SITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSG  207 (326)
Q Consensus       128 ~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~  207 (326)
                      -++|.++|+|+.+++|++.++|.+++|..++|++.++.|++|++.+|++|.++|+...+.+.+.|.+.+++||. +....
T Consensus       267 l~~~~l~~~r~~llvP~tif~GleqaF~~~~fTk~~V~c~~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~-~~~v~  345 (390)
T KOG3097|consen  267 LTFKHLRDIRLRLLVPLTIFSGLEQAFLCADFTKAYVACALGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRP-PLLVL  345 (390)
T ss_pred             HHHHHhcCcceeeeehhhhhhHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc-cHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999988 57788


Q ss_pred             HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhH
Q 020441          208 GAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLS  254 (326)
Q Consensus       208 g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~  254 (326)
                      +++.|...... ...|+|.++  +++..++...+||++|+.|+++++
T Consensus       346 gavv~l~li~~-~~~w~~~~~--~~~i~y~~aalwgv~d~vw~t~in  389 (390)
T KOG3097|consen  346 GAVVHLLLITI-LFFWAPNPQ--DSWIFYVAAALWGVGDAVWKTQIN  389 (390)
T ss_pred             HHHHHHHHHHH-HHhcccCCC--CceEEEeehhhcCccHHHHHhhcC
Confidence            88888755432 235666542  246678999999999999999875

>PRK09952 shikimate transporter; Provisional

Probab=99.80  E-value=8.8e-18  Score=159.17  Aligned_cols=286  Identities=12%  Similarity=0.131  Sum_probs=162.5

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhc--CCCCCCCCCc
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK--DDKGGSTSGT   79 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~--~~~~~~~~~~   79 (326)
                      +..|.++|++.|.+|++..+|+.|..|          +++||+..+........|.++|..+...+..  ...+...++|
T Consensus       129 ~~~R~l~G~~~g~~~~~~~~~~~e~~p----------~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gW  198 (438)
T PRK09952        129 VTLRAIQGFAVGGEWGGAALLAVESAP----------KNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGW  198 (438)
T ss_pred             HHHHHHHHhhhcccHHHHHHHHHHhCC----------CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccCh
Confidence            457999999999999999999999998          4588988888877777777777666544432  1112335799


Q ss_pred             hhhHHHHHHHHHHHHHHHHHccCCccccccc--hh-hh-chhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Q 020441           80 TLLFIVFLGVITLGTILMCFLRKEEDKGEKE--TA-DA-SVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFV  155 (326)
Q Consensus        80 ~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~--~~-~~-~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~  155 (326)
                      |.+|.+..++.    ++.+++++..+|+++.  +. +. +.+++.+..+      .++++|+..+.............+.
T Consensus       199 r~~f~~~~~~~----l~~~~l~~~~~es~~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~  268 (438)
T PRK09952        199 RIPFLFSIVLV----LIALWVRNGMEESAEFEQQQHEQAAAKKRIPVIE------ALLRHPGAFLKIIALRLCELLTMYI  268 (438)
T ss_pred             HHHHHHHHHHH----HHHHHHHHhCCCChhHHHHHhhcccccccCCHHH------HHHHchHHHHHHHHHHHHHHHHHHH
Confidence            99887543322    2233444333332211  00 00 0001111211      1345666554432222111111111


Q ss_pred             Hhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcc-cCCCCCcch
Q 020441          156 WAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINY-SVTSGVLGT  232 (326)
Q Consensus       156 ~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~-~~~~~~~~~  232 (326)
                      ...+.+.+..+.+|.+  ....+..+.++...++.++.|+++||++||+ .+..+.++........+... ..+.    .
T Consensus       269 ~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~----~  343 (438)
T PRK09952        269 VTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRR-VYITGALIGTLSAFPFFMALEAQSI----F  343 (438)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHHHHHHHHHcCCh----H
Confidence            1122223434444543  2334455667778889999999999999985 55555544433222111111 1111    1


Q ss_pred             HHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhh-HHHHHHHHHHHHHHHHhhhhhH------HHHHHHHHHHHH
Q 020441          233 LYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFA-QLKVWQCASIAVVFFIGPYISL------QAMLIVMVVGIC  304 (326)
Q Consensus       233 ~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa-~~~~~~~~g~~i~~~i~~~~~~------~~~~~~~~~~~~  304 (326)
                      ....+..++.+++.+...+..++++.|.+|.+ +.++.+ .++....+|+++++.+...+..      .....++.+..+
T Consensus       344 ~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~  423 (438)
T PRK09952        344 WIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCL  423 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            23344456667888888888889999999986 466777 5777777888888888766521      122333444445


Q ss_pred             HHHHHHHH
Q 020441          305 VALVGILF  312 (326)
Q Consensus       305 ~~~~~~~~  312 (326)
                      ++.+..+.
T Consensus       424 i~~v~~~~  431 (438)
T PRK09952        424 ISAMTALL  431 (438)
T ss_pred             HHHHHHHH
Confidence            55555443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.80  E-value=1.7e-17  Score=151.34  Aligned_cols=272  Identities=15%  Similarity=0.123  Sum_probs=178.9

Q ss_pred             CchhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCch
Q 020441            1 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTT   80 (326)
Q Consensus         1 li~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~   80 (326)
                      |+.+|++.|+++|..|....++..+..|          |+||++..++......+++++|..++.++-+      .+|||
T Consensus       104 Ll~aR~~~g~a~G~f~~i~~~~a~~lvp----------p~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~------~~GWR  167 (394)
T COG2814         104 LLLARALAGLAHGVFWSIAAALAARLVP----------PGKRGRALALVFTGLTLATVLGVPLGTFLGQ------LFGWR  167 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC----------ccchhhHHHHHHHHHHHHHHHhccHHHHHHH------HhhHH
Confidence            4679999999999999999999999999          6799999999999999999999999998854      57899


Q ss_pred             hhHHHHHHHHHHHHHH-HHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHH--HHHHHHHHHHHHHHHh
Q 020441           81 LLFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLI--IPLFAYSGLQQAFVWA  157 (326)
Q Consensus        81 ~~f~~~~~i~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll--~p~~~~~g~~~~f~~~  157 (326)
                      ..|.+..+++.+..+. ...+| |.+.+++        +..+.++    .++++++|+....  .-.+.+.|....|-  
T Consensus       168 ~~F~~ia~l~ll~~~~~~~~lP-~~~~~~~--------~~~~~~~----~~~~l~~p~v~~~l~~t~l~~~g~F~~ft--  232 (394)
T COG2814         168 ATFLAIAVLALLALLLLWKLLP-PSEISGS--------LPGPLRT----LLRLLRRPGVLLGLLATFLFMTGHFALYT--  232 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC-CccCCCC--------CCcchhH----HHHHhcCchHHHHHHHHHHHHcchhhhHH--
Confidence            9887665555554433 34455 2111111        1122222    3457888877543  22334444443332  


Q ss_pred             hccccccccccc--chhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHH
Q 020441          158 EFTKEIVTPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYP  235 (326)
Q Consensus       158 ~~~~~~~~~~lg--~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~  235 (326)
                      +..+ +.++.-|  .+.+++++..+|++..+|+.+.||+.|| +.++ .+.....+.......  +.+.+++    +...
T Consensus       233 Yi~P-~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~-~l~~~~~l~a~~~l~--l~~~~~~----~~~~  303 (394)
T COG2814         233 YIRP-FLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRR-ALIAALLLLALALLA--LTFTGAS----PALA  303 (394)
T ss_pred             hHHH-HHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchh-HHHHHHHHHHHHHHH--HHHhcch----HHHH
Confidence            2222 2333334  4478999999999999999999999999 6553 444444444433322  2222332    3556


Q ss_pred             HHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhh----HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 020441          236 LIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFA----QLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVALVGIL  311 (326)
Q Consensus       236 ~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa----~~~~~~~~g~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  311 (326)
                      ++..++||+....-......-+++..||+++.+-+    .+|....+|+.++-.+-.........+.-..+.+++.....
T Consensus       304 ~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~  383 (394)
T COG2814         304 LALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLAL  383 (394)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence            66677799998887777777777877887755433    66666677777766665554444444554444445554444


Q ss_pred             H
Q 020441          312 F  312 (326)
Q Consensus       312 ~  312 (326)
                      .
T Consensus       384 ~  384 (394)
T COG2814         384 L  384 (394)
T ss_pred             H
Confidence            3

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.79  E-value=3.4e-17  Score=154.86  Aligned_cols=286  Identities=14%  Similarity=0.127  Sum_probs=151.0

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhc--CCCCCCCCCc
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK--DDKGGSTSGT   79 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~--~~~~~~~~~~   79 (326)
                      +..|+++|++.|.+|++..+++.|..|          +++||++.++.......|..+|.++...+..  .+.+...++|
T Consensus       128 ~~~R~l~G~g~g~~~~~~~~~i~e~~p----------~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW  197 (432)
T PRK10406        128 LLARLFQGLSVGGEYGTSATYMSEVAV----------EGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW  197 (432)
T ss_pred             HHHHHHHHhhhhhhHhhHHHHHHHhCC----------CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence            568999999999999999999999998          4689998888776666776666665443322  1112335799


Q ss_pred             hhhHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH-Hhh
Q 020441           80 TLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFV-WAE  158 (326)
Q Consensus        80 ~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~-~~~  158 (326)
                      |.+|.+-.+.++    +.++++...+|+++++.++ .++..++++       ++++++..++........ ...++ ...
T Consensus       198 r~~F~i~~~~~l----l~~~~~~~~~e~~~~~~~~-~~~~~~~~~-------l~~~~~~~~~~~~~~~~~-~~~~~~~~~  264 (432)
T PRK10406        198 RIPFALGAVLAV----VALWLRRQLDETSQQETRA-LKEAGSLKG-------LWRNRRAFIMVLGFTAAG-SLCFYTFTT  264 (432)
T ss_pred             HHHHHHHHHHHH----HHHHHHhcCCCCchHHHhh-hcccccHHH-------HHhhHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            998865332222    2333443333322111110 011112322       445666554332221111 11111 112


Q ss_pred             cccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHh-cccCCCCCcchHHH
Q 020441          159 FTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI-NYSVTSGVLGTLYP  235 (326)
Q Consensus       159 ~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l-~~~~~~~~~~~~~~  235 (326)
                      +.+.+..+..|.+  +.+....+..+...+++++.|+++||++||+ .+..+.++.......... ....+.    +...
T Consensus       265 ~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  339 (432)
T PRK10406        265 YMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT-SMLCFGSLAALFTVPILSALQNVSS----PYAA  339 (432)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-HHHHHHHHHHHHHHHHHHHHHcCCc----HHHH
Confidence            2233444444543  5666677777777888999999999999885 444433322222111111 111111    1222


Q ss_pred             HHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhh-HHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHH
Q 020441          236 LIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFA-QLKVWQCASIAVVFFIGPYISL----QAMLIVMVVGICVALVG  309 (326)
Q Consensus       236 ~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa-~~~~~~~~g~~i~~~i~~~~~~----~~~~~~~~~~~~~~~~~  309 (326)
                      +....+.+++.+...+..+++..|.||++ |.++.+ .+.....+++...+.+...+..    ....++..+..+++.++
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~  419 (432)
T PRK10406        340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLV  419 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            22222222233334455677889999986 677888 5555555444445555444421    11223334445555555


Q ss_pred             HHHHHH
Q 020441          310 ILFLTI  315 (326)
Q Consensus       310 ~~~~~~  315 (326)
                      .+.++.
T Consensus       420 ~~~l~~  425 (432)
T PRK10406        420 SLMLHR  425 (432)
T ss_pred             HHHhhh
Confidence            544443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.75  E-value=2.2e-16  Score=151.73  Aligned_cols=266  Identities=11%  Similarity=0.038  Sum_probs=147.5

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhc--CCCCCCCCCc
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK--DDKGGSTSGT   79 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~--~~~~~~~~~~   79 (326)
                      +..|+++|++.|+++++..++++|..|          +++||+..++.......|..+|+.+...+..  .......+||
T Consensus       122 ~~~R~l~G~g~g~~~~~~~~~~~e~~p----------~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gW  191 (490)
T PRK10642        122 LLCKMAQGFSVGGEYTGASIFVAEYSP----------DRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGW  191 (490)
T ss_pred             HHHHHHHHhHhHhhHHHHHHHHHHhCC----------CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccH
Confidence            568999999999999999999999998          4689999998877777888888877654422  1122345899


Q ss_pred             hhhHHHHHHHHHHHHHHHHHccCCcccc-ccchhhh--c----hhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 020441           80 TLLFIVFLGVITLGTILMCFLRKEEDKG-EKETADA--S----VNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQ  152 (326)
Q Consensus        80 ~~~f~~~~~i~~l~~~l~~~l~~~~~~~-~~~~~~~--~----~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~  152 (326)
                      |.+|.+...+++++.++...+|++++.. +.++.++  +    +.++.++++.++      ++++..+.... .......
T Consensus       192 R~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~~~  264 (490)
T PRK10642        192 RIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIAT------KHWRSLLTCIG-LVIATNV  264 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHHH------HhHHHHHHHHH-HHHHHHH
Confidence            9988764433333333223333221100 0000000  0    011122333221      23333332211 1111111


Q ss_pred             HHH-Hhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 020441          153 AFV-WAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGV  229 (326)
Q Consensus       153 ~f~-~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~  229 (326)
                      .++ ...+.+.+..+..|.+  ..+.......++..++.++.|+++||+|||+ .+..+.+.........+.....+.  
T Consensus       265 ~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-~~~~~~~~~~~~~~~~~~~~~~~~--  341 (490)
T PRK10642        265 TYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP-FVILGSVALFVLAIPAFILINSNV--  341 (490)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHhCCC--
Confidence            111 1122333444444543  4455566677788899999999999999995 555554332221111111111111  


Q ss_pred             cchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhh-HHHHHHHHHHHHHHHHhhhh
Q 020441          230 LGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFA-QLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       230 ~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa-~~~~~~~~g~~i~~~i~~~~  290 (326)
                        ....++..++.|++.+...+....++.+++|++ |..+.+ .+++....| .+++.+..++
T Consensus       342 --~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g-~~~p~i~g~l  401 (490)
T PRK10642        342 --IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVA-GLTPTLAAWL  401 (490)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence              133344455667766666777778888999987 566788 577765444 4555444444

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.74  E-value=4.4e-16  Score=142.77  Aligned_cols=262  Identities=15%  Similarity=0.078  Sum_probs=169.2

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..+++..+++.|..++          ++|++..|+.....+++.++|+.++..+..      ..+||.
T Consensus        96 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~------~~g~~~  159 (365)
T TIGR00900        96 YVLAGILAIAQAFFTPAYQAMLPDLVPE----------EQLTQANSLSQAVRSLFYIVGPGIGGLMYA------TLGIKW  159 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------HhhHHH
Confidence            4679999999999999999999999984          589999999999999999999999877653      246887


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhccc
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTK  161 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~  161 (326)
                      .|.+..+..++..++..+++.++++++++ ++.+++..++.++.   ..+++++|+...+....+............+.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (365)
T TIGR00900       160 AIWVDAVGFAISALLIVSVRIPELAASEI-QALSNAVLRDTREG---IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFP  235 (365)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCCccc-cccchhHHHHHHhH---HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            77655444444444444454433322111 11000111112222   223456777655443322222221111111122


Q ss_pred             ccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHH
Q 020441          162 EIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMA  239 (326)
Q Consensus       162 ~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  239 (326)
                      .+.++.+|.  .+.+......+++..++.++.|++.||++|++ ++..+..........  +.+.+++    .+..++..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~  308 (365)
T TIGR00900       236 YVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMA-LMTGAIFVIGLAILV--VGLTPPN----FPLFLVLW  308 (365)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH-HHHHHHHHHHHHHHH--HHhhchh----HHHHHHHH
Confidence            233333443  46788888899999999999999999998885 555444333332222  1122211    24566778


Q ss_pred             HHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          240 ALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       240 ~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ++.|++.+..++...+++.+..|++ +..+++.++..+.+|..+++.+...+
T Consensus       309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l  360 (365)
T TIGR00900       309 FAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL  360 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999876 56789999999999999998887654

>PRK15075 citrate-proton symporter; Provisional

Probab=99.73  E-value=4.7e-16  Score=147.20  Aligned_cols=264  Identities=14%  Similarity=0.087  Sum_probs=149.1

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCC--CCCCCCc
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--GGSTSGT   79 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~--~~~~~~~   79 (326)
                      +.+|+++|++.|..|++...+++|..|          +++||+..++.....+.+..+|+.++..+...-.  ..+.++|
T Consensus       121 ~~~R~l~G~~~g~~~~~~~~~~~e~~p----------~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gW  190 (434)
T PRK15075        121 LLGRLLQGFSAGVELGGVSVYLAEIAT----------PGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGW  190 (434)
T ss_pred             HHHHHHhhccccccHHHHHHHHHhhCC----------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccch
Confidence            568999999999999988899999999          4699999999888888888888777765532110  1134689


Q ss_pred             hhhHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH-Hhh
Q 020441           80 TLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFV-WAE  158 (326)
Q Consensus        80 ~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~-~~~  158 (326)
                      |.+|.+..    +..++.+++++..+|+++...++   ++.+.++.+++   ..++++............ ...++ ...
T Consensus       191 r~~f~~~~----~~~~~~~~~~~~~~e~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~  259 (434)
T PRK15075        191 RIPFLIGC----LIVPFIFLIRRSLEETEEFLARK---HRPSMREIFRS---LAANWRIVLAGMLMVAMT-TVSFYLITV  259 (434)
T ss_pred             HHHHHHHH----HHHHHHHHHHHhcCCCHHHHHhh---hccccccHHHH---HHHhHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            98886422    22233334443333322100010   11112222222   234444332221111111 11111 122


Q ss_pred             cccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHH
Q 020441          159 FTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPL  236 (326)
Q Consensus       159 ~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~  236 (326)
                      +.+.+.++..|.+  +.++...+++++..+++++.|+++||++||+ ....+..+......+.+....++++   .....
T Consensus       260 ~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  335 (434)
T PRK15075        260 YTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP-VLIAFTVLAILTAYPALSWLVAAPS---FARML  335 (434)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHcCCc---hHHHH
Confidence            2334444444543  5677778888999999999999999999986 5444333222211111111111111   12222


Q ss_pred             HHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhH-HHHHHHHHHHHHHHHhhhh
Q 020441          237 IMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQ-LKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       237 ~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~-~~~~~~~g~~i~~~i~~~~  290 (326)
                      ...++.+++.+..++.......|.+|++ +..+++. +++.+.+++++++.+...+
T Consensus       336 ~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i  391 (434)
T PRK15075        336 AVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL  391 (434)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence            3334456667777776777889999976 5667874 5666666666777666544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.72  E-value=2.2e-15  Score=140.54  Aligned_cols=270  Identities=16%  Similarity=0.114  Sum_probs=166.2

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|+++|++.+..++...+++.+..|          +++|++..|+.......+..+|+.++..+..      ..+||.
T Consensus       101 ~~~r~~~G~~~~~~~~~~~~~i~~~~~----------~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~------~~gw~~  164 (390)
T PRK03545        101 LISRIGIAFAHAIFWSITASLAIRVAP----------AGKKAQALSLLATGTALAMVLGLPLGRVIGQ------YLGWRT  164 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC----------hhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH------HhcHHH
Confidence            567999999999999988888888888          4589999999988889999999988876543      246898


Q ss_pred             hHHHHHHHHHHHHHHHH-HccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHHHHHHhhc
Q 020441           82 LFIVFLGVITLGTILMC-FLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIP-LFAYSGLQQAFVWAEF  159 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p-~~~~~g~~~~f~~~~~  159 (326)
                      .|.+..++.++..++.. ++|++++++  +         .+.    ++..+.++||+...... .++........ ....
T Consensus       165 ~f~~~~~~~~l~~~~~~~~~~~~~~~~--~---------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  228 (390)
T PRK03545        165 TFLAIGGGALITLLLLIKLLPLLPSEH--S---------GSL----KSLPLLFRRPALVSLYLLTVVVVTAHFTA-YSYI  228 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCC--c---------chH----HHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HHHH
Confidence            88777655555443332 343321111  0         011    12233567776543221 11111111111 1111


Q ss_pred             ccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHH
Q 020441          160 TKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLI  237 (326)
Q Consensus       160 ~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (326)
                      + .+..+..|.  +..+..+.+.+++..+++++.|++.||+++|. +.....+. ...... .....++     +....+
T Consensus       229 ~-~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-~~~~~~~~-~~~~~~-l~~~~~~-----~~~~~~  299 (390)
T PRK03545        229 E-PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF-LLIAIALL-LVCLLL-LLPAANS-----EWHLSV  299 (390)
T ss_pred             H-HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH-HHHHHHHH-HHHHHH-HHHHhch-----HHHHHH
Confidence            1 122333443  36778888899999999999999999998774 43332222 222211 1122222     244566


Q ss_pred             HHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHHH
Q 020441          238 MAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS----LQAMLIVMVVGICVALVGILF  312 (326)
Q Consensus       238 ~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~  312 (326)
                      ..+++|++.....+.....+.+..|+++..+.+.+.....+|..+++.+...+.    .....+...++.+++.+....
T Consensus       300 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        300 LSIFWGIAIMCIGLAMQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence            788889988777777777888888877766777777777777777777776553    333344444445555555433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.71  E-value=2.3e-15  Score=139.31  Aligned_cols=265  Identities=14%  Similarity=0.097  Sum_probs=157.5

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhc--CCCCCCCCCc
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK--DDKGGSTSGT   79 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~--~~~~~~~~~~   79 (326)
                      +.+|+++|++.+..+++..+++.|..+          +++|++..++.......|.++|+++...+..  .......++|
T Consensus       100 ~~~r~l~G~~~~~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w  169 (394)
T TIGR00883       100 LLARLIQGFSLGGEWGGAALYLAEYAP----------PGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW  169 (394)
T ss_pred             HHHHHHHHhhccccccccHHHhhhcCC----------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccch
Confidence            467999999999999999999999888          4689999999988888898888887765532  1111235789


Q ss_pred             hhhHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchh--hHHHHHHHHHHHHHHHHHHh
Q 020441           80 TLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVR--MLLIIPLFAYSGLQQAFVWA  157 (326)
Q Consensus        80 ~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~--~lll~p~~~~~g~~~~f~~~  157 (326)
                      |.+|.+..++..++..+...++++++++++  +++++..+.+.++       .+++++  .+......+......... .
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~  239 (394)
T TIGR00883       170 RIPFLVSAVLVLIGLYLRRNLEETPVFEKA--QEKHKKKRGPIRE-------TLTKHRKPFLLGLGLVIATTTTFYLI-T  239 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhHHHH--HhccccccCCHHH-------HHHhchHHHHHHHHHHHHHHHHHHHH-H
Confidence            988876544443333332333322111111  1111111122322       333433  322221221111111111 1


Q ss_pred             hcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHH-HHHHHHHHHHhcccCCCCCcchHH
Q 020441          158 EFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAI-AQVVVFLWILINYSVTSGVLGTLY  234 (326)
Q Consensus       158 ~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i-~~~~~~~~~~l~~~~~~~~~~~~~  234 (326)
                      .+.+.+..+..|.  ++.+......++...++.++.|++.||++||+ .+..+.. ..............+++    ...
T Consensus       240 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~  314 (394)
T TIGR00883       240 TYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP-VLIIFTVLAALLAVPLLMALLDSGS----FTL  314 (394)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHHHHHHhcCCc----hHH
Confidence            2222333333443  36777788889999999999999999999885 4433322 22222111111111121    244


Q ss_pred             HHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhh-HHHHHHHHHHHHHHHHhhhhh
Q 020441          235 PLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFA-QLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       235 ~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa-~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      .+...++.|++.+..++..++.+.+.+|++ +..+++ .+.....+|..+++.+...+.
T Consensus       315 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~  373 (394)
T TIGR00883       315 FFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALV  373 (394)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHH
Confidence            455567778888888899999999999976 566777 467777788888888876553

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.70  E-value=2.9e-15  Score=143.31  Aligned_cols=271  Identities=15%  Similarity=0.070  Sum_probs=151.1

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCC--CCCCCCCc
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD--KGGSTSGT   79 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~--~~~~~~~~   79 (326)
                      +.+|+++|++.|..++...+++.|..|+          ++||+..|+......+|..++.+++..+....  .....++|
T Consensus       124 ~~~R~l~G~~~g~~~~~~~~~i~e~~~~----------~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW  193 (479)
T PRK10077        124 VIYRIIGGIGVGLASMLSPMYIAEIAPA----------HIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW  193 (479)
T ss_pred             HHHHHHHhhhHhHHhhHHHHHHHhhCCh----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCh
Confidence            5789999999999999999999999994          58999999988777888888777766554321  11235789


Q ss_pred             hhhHHHHHHHHHHHHHHHHHccCCccc----cccchhhh-----c-hhhhhHHHHHHHHHHHh--hcchhhHHHHHHHHH
Q 020441           80 TLLFIVFLGVITLGTILMCFLRKEEDK----GEKETADA-----S-VNFYSYLVSLSKSITTL--LADVRMLLIIPLFAY  147 (326)
Q Consensus        80 ~~~f~~~~~i~~l~~~l~~~l~~~~~~----~~~~~~~~-----~-~~~~~~~~~~~k~~~~~--~~~~~~lll~p~~~~  147 (326)
                      |.+|.+..+.+++..+..+++|++.+.    .++++.++     . ..+.....++.++..+.  .++++.+......+.
T Consensus       194 r~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (479)
T PRK10077        194 RYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLMFGVGVIV  273 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHH
Confidence            998887665566655556677654321    11110000     0 00000111111222110  011111111111111


Q ss_pred             HH-----HHHHH--H-Hhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHH
Q 020441          148 SG-----LQQAF--V-WAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL  217 (326)
Q Consensus       148 ~g-----~~~~f--~-~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~  217 (326)
                      .+     +.+..  . ..++.+.+. ...|.+  .........++...++.++.|++.||+|||+ ++..+.++.....+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~p~i~-~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~-~~i~~~~~~~v~~~  351 (479)
T PRK10077        274 IGVMLSVFQQFVGINVVLYYAPEIF-KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP-LQIIGALGMAIGMF  351 (479)
T ss_pred             HHHHHHHHHHHhChhHHHHHHHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChH-HHHHhHHHHHHHHH
Confidence            11     11110  0 011112111 123432  3455667788889999999999999999985 66666655544432


Q ss_pred             HHHh-cccCCCCCcchHHHHHHHHHHhhhhHH-hhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhh
Q 020441          218 WILI-NYSVTSGVLGTLYPLIMAALLGIGDGV-LNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       218 ~~~l-~~~~~~~~~~~~~~~~~~~l~G~~d~~-~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~  288 (326)
                      ...+ ...+..    ........++++.+.+. +.+..+.++.|.+|++ |..+.+.....+.+|..++..+.+
T Consensus       352 ~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p  421 (479)
T PRK10077        352 SLGTAFYTQAP----GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFP  421 (479)
T ss_pred             HHHHHHhcCcc----cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            2211 111211    12222233344444432 4467789999999965 677888888888777777655544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.70  E-value=8.5e-15  Score=137.76  Aligned_cols=256  Identities=10%  Similarity=-0.035  Sum_probs=159.7

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|+++|++.+...++..+++.+..+          +++|++..++.....+++..+|+.++..+...      .+|+.
T Consensus       114 ~~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~------~~~~~  177 (417)
T PRK10489        114 YLLGLWDGFFGSLGVTALLAATPALVG----------RENLMQAGAITMLTVRLGSVISPALGGLLIAA------GGVAW  177 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhccC----------HHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH------HhhHH
Confidence            357888999988888887777777777          35889999999888899999999988766432      24555


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhccc
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTK  161 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~  161 (326)
                      .|.+..+..++..++.+.+|+..++++++  +   ++.++.++..   ...+++|+........+......++. . +.+
T Consensus       178 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~p  247 (417)
T PRK10489        178 NYGLAAAGTFITLLPLLRLPALPPPPQPR--E---HPLRSLLAGF---RFLLASPVVGGIALLGGLLTMASAVR-V-LYP  247 (417)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCccc--c---cchHHHHHHH---HHHHcChHHHHHHHHHHHHHHHHhHH-H-hhH
Confidence            56554444444444445555322111110  0   1111222222   22456666543322222111111111 1 222


Q ss_pred             ccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHH
Q 020441          162 EIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMA  239 (326)
Q Consensus       162 ~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  239 (326)
                      .+..+.+|.  ...++.....+++..+++++.|++.||.++++ .+..+.+.....+++  +...++     .....+..
T Consensus       248 ~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~-~l~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~  319 (417)
T PRK10489        248 ALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGL-LMLLSTLGSFLAVGL--FGLMPM-----WILAVLCL  319 (417)
T ss_pred             HHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcch-HHHHHHHHHHHHHHH--HHccch-----HHHHHHHH
Confidence            344444454  46788888999999999999999999866553 444554444433322  223333     24456677


Q ss_pred             HHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          240 ALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       240 ~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +++|++.+..++...+++.+..|++ +..+++.++..+.+|..++..+...+.
T Consensus       320 ~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~  372 (417)
T PRK10489        320 ALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLG  372 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHH
Confidence            8889988888888889999999976 577888888888888888888887664

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.69  E-value=6.9e-15  Score=137.69  Aligned_cols=257  Identities=12%  Similarity=-0.001  Sum_probs=156.9

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|+++|++.+..++....++.|..+          +++|++..|++......+..+|+.++..+..      ..+||.
T Consensus       107 ~~~~~l~G~~~~~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~  170 (406)
T PRK11551        107 LVARLLTGVGLGGALPNLIALTSEAVG----------PRLRGTAVSLMYCGVPFGGALASVIGVLAAG------DAAWRH  170 (406)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHcC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------ccCHHH
Confidence            568999999999999888888899887          3589999999998888888888887754432      246888


Q ss_pred             hHHHHHHHHHHHHHH-HHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcc
Q 020441           82 LFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFT  160 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~  160 (326)
                      .|.+..++.++..++ ..++|++.+++++++.+   .++++..+.   .++..++++...+....+..... .+....+.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  243 (406)
T PRK11551        171 IFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAG---KQRAPVLRA---LFGEGRATATLLLWISYFFTLIV-LYFLLNWL  243 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhHHhccCcc---hhhhhhHHH---HhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            777655444444333 34455433221111000   011111111   11111112222111111111111 11111111


Q ss_pred             cccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHH
Q 020441          161 KEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM  238 (326)
Q Consensus       161 ~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (326)
                      +.+..+ .|.  ...+......+++..+++++.|++.||+++|+ .+..+.+........  +...++     .....+.
T Consensus       244 p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~  314 (406)
T PRK11551        244 PSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR-VVLLIYAGILASLAA--LAAAPS-----FAGMLLA  314 (406)
T ss_pred             HHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHH--HHhcCc-----HHHHHHH
Confidence            222222 343  46778888899999999999999999999885 554443333333221  122233     2345566


Q ss_pred             HHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          239 AALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       239 ~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .++.|++.+..++..+++..+.+|++ +..+.+.++....+|..+++.+...+
T Consensus       315 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l  367 (406)
T PRK11551        315 GFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQL  367 (406)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhh
Confidence            77888888888888999999999976 57788889999999999998888766

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.68  E-value=4.5e-15  Score=137.08  Aligned_cols=266  Identities=15%  Similarity=0.013  Sum_probs=156.3

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..+++...++.|..|          +++|++..|+.....+.+..+|+.++..+...      .+||.
T Consensus        86 ~~~~~l~g~~~~~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~  149 (399)
T TIGR00893        86 YILRVLLGAAEAPFFPGIILIVASWFP----------ASERATAVSIFNSAQGLGGIIGGPLVGWILIH------FSWQW  149 (399)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCC----------HHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh------CCchH
Confidence            568999999999999999999999988          45899999999999999999999888766542      35887


Q ss_pred             hHHHHHHHHHHHHHHHH-HccCCcccccc-chhhhc---hh------hhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 020441           82 LFIVFLGVITLGTILMC-FLRKEEDKGEK-ETADAS---VN------FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGL  150 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~-~l~~~~~~~~~-~~~~~~---~~------~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~  150 (326)
                      .|.+..++.++..++.. ++|+++++++. ++++++   ..      ++.+.++..++..+.+++|+........+....
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (399)
T TIGR00893       150 AFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNI  229 (399)
T ss_pred             HHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHh
Confidence            77765544444444333 34433221110 000000   00      000000011123345677776554433222222


Q ss_pred             HHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHH----HHHHHHHHHHH-hcc
Q 020441          151 QQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGA----IAQVVVFLWIL-INY  223 (326)
Q Consensus       151 ~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~----i~~~~~~~~~~-l~~  223 (326)
                      ....... +.+.+..+..|.  .+.+......++...+++++.|++.||++||+.......    .......+... ...
T Consensus       230 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (399)
T TIGR00893       230 GLGFFLT-WFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY  308 (399)
T ss_pred             HHHHHHH-HHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc
Confidence            2221211 222344444454  366778888899999999999999999987731111111    11111111111 121


Q ss_pred             cCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          224 SVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       224 ~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .++      ....+.....+.......+...++..+.+|++ +..+++.++..+.+|..+++.+...+
T Consensus       309 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l  370 (399)
T TIGR00893       309 VNI------PYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAI  370 (399)
T ss_pred             chh------HHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhh
Confidence            111      22222233333333337788899999999976 56788999999999999998888765

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.68  E-value=5.6e-15  Score=135.90  Aligned_cols=257  Identities=12%  Similarity=0.031  Sum_probs=154.5

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|.++|++.+..+.....++.+..+           ++|++..+++......+..+++.+...+..      ..+||.
T Consensus        95 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~  157 (377)
T TIGR00890        95 YLTYGLASAGVGIAYGIALNTAVKWFP-----------DKRGLASGIIIGGYGLGSFILSPLITSVIN------LEGVPA  157 (377)
T ss_pred             HHHHHHHhHHHHHHHHhHHHHHHHHcC-----------cccHHHHHHHHHhcchhHhHHHHHHHHHHh------cccHHH
Confidence            467899999999888766555555444           478999999988888887765554443322      246898


Q ss_pred             hHHHHHHHHHHHHHH-HHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcc
Q 020441           82 LFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFT  160 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~  160 (326)
                      .|.+..++.++..+. .++++++++++++++++. ..++       ++..+.+++++..++...++..........+.++
T Consensus       158 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (377)
T TIGR00890       158 AFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEV-SVKD-------YTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYK  229 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHheecCchhccccCccc-chhh-------hhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHH
Confidence            887766555554433 344544333221110110 0111       1223356677665443332222222111112111


Q ss_pred             cccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHH
Q 020441          161 KEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM  238 (326)
Q Consensus       161 ~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (326)
                       .+. +.+|.  +..+....+.++...+++++.|++.||++||+ .+..+.+.......+..  ..++.+   ....+..
T Consensus       230 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~  301 (377)
T TIGR00890       230 -PYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK-TMSIVFGISAVGMAAML--FIPMLN---DVLFLAT  301 (377)
T ss_pred             -HHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHH--Hcccch---hHHHHHH
Confidence             121 22343  35677788899999999999999999999885 55555555444333222  222210   1223344


Q ss_pred             HHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          239 AALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       239 ~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      .++.|++.+...+..+++..+.+|++ +..+++.++....+|..+++.+...+.
T Consensus       302 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~  355 (377)
T TIGR00890       302 VALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL  355 (377)
T ss_pred             HHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677777777777788899999876 467888999999999999998877653

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.66  E-value=7e-14  Score=131.04  Aligned_cols=258  Identities=14%  Similarity=0.057  Sum_probs=153.4

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|+++|++.+..+....+++.|..+          +++|++..++.......+..+|+.++..+...      .+||.
T Consensus       105 ~~~~~l~G~~~~~~~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~------~~w~~  168 (406)
T PRK15402        105 TLLRFLQGIGLCFIGAVGYAAIQESFE----------EADAIKITALMANVALLAPLLGPLVGAALIHV------LPWRG  168 (406)
T ss_pred             HHHHHHHHhHhhhHHHHHHHHHHHHhC----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cCccH
Confidence            467999999999888777777777766          35778888888877788889998887665432      36887


Q ss_pred             hHHHHHHHHHHHHHHHH-HccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcc
Q 020441           82 LFIVFLGVITLGTILMC-FLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFT  160 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~  160 (326)
                      .|.+..++.++..+... .+|+++++++ +   +     .+.++..++..++++||+...+.......+.....+. .+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  238 (406)
T PRK15402        169 MFVLFAALAALSFFGLWRAMPETAGRVG-E---K-----LSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWI-ALS  238 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcccc-c---c-----ccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH-HHh
Confidence            78766555555444332 3333221111 1   0     0111222233346778886654433322222111111 111


Q ss_pred             cccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHh-c-ccCCCCCcchHHHH
Q 020441          161 KEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI-N-YSVTSGVLGTLYPL  236 (326)
Q Consensus       161 ~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l-~-~~~~~~~~~~~~~~  236 (326)
                      +.+..+..|.+  +.+.......++..++.++.|++.||+++|+ .+..+.++.......... . ..+..    ....+
T Consensus       239 p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~  313 (406)
T PRK15402        239 PVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS-LIRMGLWPMVAGLLLAALATVISSHA----YLWLT  313 (406)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHHHHHccccc----HHHHH
Confidence            22333334443  4566666667778889999999999999885 555565544433222111 1 11111    23345


Q ss_pred             HHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          237 IMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       237 ~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      +..+++|++.+...+..+.......|+++....+.+++.+.+|.+++..+...+
T Consensus       314 ~~~~~~g~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l  367 (406)
T PRK15402        314 AGLSLYAFGIGLANAGLYRLTLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHA  367 (406)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            566778888887776655554444455566678888998888888888887765

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.65  E-value=6.2e-14  Score=129.86  Aligned_cols=254  Identities=15%  Similarity=0.058  Sum_probs=154.9

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|+++|++.+..+++..+++.|..|          +++|++..|+.....+.+..+|+.++..+..      ..+||.
T Consensus        97 ~~~~~l~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~------~~~~~~  160 (385)
T TIGR00710        97 LVLRFVQAFGASAGSVISQALVRDIYP----------GEELSRIYSILMPVLALAPAVAPLLGGYILV------WLSWHA  160 (385)
T ss_pred             HHHHHHHHcchhHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HcCHHH
Confidence            467999999999999998889988888          4589999999999999999999988876643      246887


Q ss_pred             hHHHHHHHHHHHHHHHHH-ccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHH-HHHHHHHHHHhhc
Q 020441           82 LFIVFLGVITLGTILMCF-LRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA-YSGLQQAFVWAEF  159 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~-~~g~~~~f~~~~~  159 (326)
                      .|.+..++..+..++..+ +|+++++++++       +.   ++..++..+.+++|+......... ..+....+  ..+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  228 (385)
T TIGR00710       161 IFAFLSLAGILLSALIFFILPETLPYEARI-------QI---STYFETFLLLLKSKMFWGYALIYGASFGGFFAF--FSG  228 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCcccC-------CH---HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH--HHc
Confidence            777655545444444333 33322111110       01   111122334567777654432211 11111111  112


Q ss_pred             ccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHh-cccCCCCCcchHHHH
Q 020441          160 TKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI-NYSVTSGVLGTLYPL  236 (326)
Q Consensus       160 ~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l-~~~~~~~~~~~~~~~  236 (326)
                      .+.+..+..|.  +..+......+++..+++++.|++.||+++|+ .+..+..+.......... ...+.+.   ....+
T Consensus       229 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  304 (385)
T TIGR00710       229 APFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS-LLRMGLILFAVSAVLLEITAILGLGS---WAMII  304 (385)
T ss_pred             ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHHHHHhccch---HHHHH
Confidence            22233333343  46788888889999999999999999999885 544454443332221111 1111110   13344


Q ss_pred             HHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHH-HHHHHHHHh
Q 020441          237 IMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCA-SIAVVFFIG  287 (326)
Q Consensus       237 ~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~-g~~i~~~i~  287 (326)
                      ...++.|++.+...+.......+.+|+++..+.+.++..+.. |+..++.++
T Consensus       305 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       305 GPMMFVGIGNSMISSIAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            556778888888888888888888887777788877766654 444455444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.65  E-value=1.7e-15  Score=138.36  Aligned_cols=257  Identities=18%  Similarity=0.188  Sum_probs=157.9

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..+++...++.|..+          +++|++.+|+.....+.|..+|+.++..+..      ..+||.
T Consensus        89 ~~~~~l~g~~~~~~~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~------~~~~~~  152 (352)
T PF07690_consen   89 LIARFLLGIGSGFFSPASNALIADWFP----------PEERGRAFGILSAGFSLGSILGPLLGGFLIS------YFGWRW  152 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCC----------TCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC------HCHHCC
T ss_pred             hhhccccccccccccccccccccccch----------hhhhhhccccccchhhhhhhcccchhhhhhh------cccccc
Confidence            578999999999999999999999998          4689999999999999999999999887653      235887


Q ss_pred             hHHHHHHHHHHHHHHH-HHccCCccccccchhhhc-hhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhc
Q 020441           82 LFIVFLGVITLGTILM-CFLRKEEDKGEKETADAS-VNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEF  159 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~-~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~  159 (326)
                      .|.+..++.++..++. ++++++++++++++.+++ .+++.++++..|   +.+++|....+....+..++..... ..+
T Consensus       153 ~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  228 (352)
T PF07690_consen  153 AFLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFK---SLFKNPVLWILLIAFFLFFFVFSGF-SFF  228 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CT---HHHHHHCCHHHHHHHHHHHHHHHHH-HHH
T ss_pred             ccccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccc---cccccchhhhhhhhhhHHHHHHHHh-hcc
Confidence            7877766666655532 334333332221111111 001112211111   1223443321111222222111111 111


Q ss_pred             ccccccccccc---hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHH-hcccCCCCCcchHHH
Q 020441          160 TKEIVTPALGV---SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL-INYSVTSGVLGTLYP  235 (326)
Q Consensus       160 ~~~~~~~~lg~---~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~-l~~~~~~~~~~~~~~  235 (326)
                      .+.+..+..|.   ...+....+.++...+++++.|++.||+++++ ................. ....++     +...
T Consensus       229 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  302 (352)
T PF07690_consen  229 LPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR-RLLIAILLLILGALGLLLLPFSSS-----PVWL  302 (352)
T ss_dssp             HHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHCCSHHHCH-----HHHH
T ss_pred             cchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHHHHHHHHHHHhhh-----HHHH
Confidence            11232333333   35677788889999999999999999998764 33333322222222111 112211     2445


Q ss_pred             HHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHH
Q 020441          236 LIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVF  284 (326)
Q Consensus       236 ~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~  284 (326)
                      +...+++|++.+..++....+..+..|++ +..+.+.++..+++|..+++
T Consensus       303 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  303 IIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            56778899999999999999999999866 46789999999999998875

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.65  E-value=1.1e-13  Score=129.28  Aligned_cols=257  Identities=15%  Similarity=0.103  Sum_probs=157.2

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|+++|++.+..+++..+++.|..|          |++|++.+|+.....+.+.++|+.++-.+...       .|+.
T Consensus        92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~----------~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-------~~~~  154 (393)
T PRK11195         92 LLAYGLVGIGAAAYSPAKYGILTELLP----------GEKLVKANGWMEGSTIAAILLGTVLGGALADP-------HAEA  154 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence            357899999999999999999999998          46899999999999899999999998666431       2554


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHH-HHHHHHHHHHHHhhcc
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPL-FAYSGLQQAFVWAEFT  160 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~-~~~~g~~~~f~~~~~~  160 (326)
                      .+.+...+.+++.+..+++|+++.++++.+.+ .......+++..   ..++++|+....... .+..+....... .+ 
T Consensus       155 ~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-  228 (393)
T PRK11195        155 ALAVCALIYLLAALFNLFIPRLGARRPGQSWN-PIALLRDFFHAC---RVLWRDKLGRFSLAGTTLFWGAGATLRF-LV-  228 (393)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcccccccCCC-HHHHHHHHHHHH---HHHHhCchhHHHHHHHHHHHHHHHHHHH-HH-
Confidence            45433322233333345565433221111000 000011222222   234566664432211 111121111111 11 


Q ss_pred             cccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHH
Q 020441          161 KEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM  238 (326)
Q Consensus       161 ~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (326)
                      ..+..+.+|.  .+.|+.+...+++..++++..+|+.||.++++ ++..+..... ....  +...++     ++...+.
T Consensus       229 ~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~-~~~~g~~~~~-~~~~--~~~~~~-----~~~~~~~  299 (393)
T PRK11195        229 LAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR-VLPAGILMGL-VVLL--MALQHS-----LLPAYPL  299 (393)
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-hHHHHHHHHH-HHHH--HHHHhH-----HHHHHHH
Confidence            1123333444  37888899999999999999999999888774 5555543322 1111  122222     2444566


Q ss_pred             HHHHhhhhHHhhhhhHhhHHhhccCCc--hhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          239 AALLGIGDGVLNTQLSALLGILFKHDT--EGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       239 ~~l~G~~d~~~~~~~~~il~~~f~~~~--~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .+++|++.+..++..++.+.+.-|++.  ..+++..++.+.+|..++..+...+
T Consensus       300 ~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~  353 (393)
T PRK11195        300 LILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL  353 (393)
T ss_pred             HHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence            778899999888888888887766543  5578889999999988888887655

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.64  E-value=2.7e-14  Score=136.50  Aligned_cols=267  Identities=10%  Similarity=-0.068  Sum_probs=149.0

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|+++|++.|..|++...++.+..|          +++||+.+|++....++|..+|+.++..+.....   ..+||.
T Consensus       126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~----------~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~---~~~~~~  192 (467)
T PRK09556        126 IALWALSGFFQSTGGPCSYSTITRWTP----------RRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF---DGHVIG  192 (467)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHcC----------ccceeeeEEeeecccchhhhHHHHHHHHHHHhhc---cCcchh
Confidence            567999999999999998899999988          4689999999988888999999888755433210   124776


Q ss_pred             hHHHHHHHHHHHHHHH-HHccCCccc-c--ccch-------hhhch--hhhhHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 020441           82 LFIVFLGVITLGTILM-CFLRKEEDK-G--EKET-------ADASV--NFYSYLVSLSKSITTLLADVRMLLIIPLFAYS  148 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~-~~l~~~~~~-~--~~~~-------~~~~~--~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~  148 (326)
                      .|.+..+++++..++. +++++++++ .  ++++       .+++.  .++.+.++.+++  +.++||+...+....+..
T Consensus       193 ~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~  270 (467)
T PRK09556        193 MFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVE--YVLKNPVIWLLCFANIFL  270 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHH--HHHcChHHHHHHHHHHHH
Confidence            6655444444333333 334432211 0  0000       00000  001111221111  256777765544222211


Q ss_pred             HHHHHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCC
Q 020441          149 GLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVT  226 (326)
Q Consensus       149 g~~~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~  226 (326)
                      ..... ....+.+.|..+..|.+  +.+....+..++..++.++.|+++||++||+ .+...............+...++
T Consensus       271 ~~~~~-~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~-~~~~~~~~~~~~~~~~~~~~~~~  348 (467)
T PRK09556        271 YIVRI-GIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR-ALVACIALALIIFTLGVYQHATS  348 (467)
T ss_pred             HHHHH-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-hHHHHHHHHHHHHHHHHHHhcCc
Confidence            11110 01122334544455553  6677777888889999999999999999875 33332222221111111122222


Q ss_pred             CCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHH-HHHHHHHHhhhh
Q 020441          227 SGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCA-SIAVVFFIGPYI  290 (326)
Q Consensus       227 ~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~-g~~i~~~i~~~~  290 (326)
                           +...++..++.|++........+....+.+|++ +..+.+..+....+ |.++++.+..++
T Consensus       349 -----~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i  409 (467)
T PRK09556        349 -----EYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMI  409 (467)
T ss_pred             -----HHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHH
Confidence                 233445556667554444444445666889876 47788888888776 555555444433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.64  E-value=1e-13  Score=129.60  Aligned_cols=249  Identities=11%  Similarity=0.053  Sum_probs=153.5

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|+++|++.|..++...+++.|..+          +++|++..++.++..+.+..+|+.++..+..      .++||.
T Consensus       112 ~~~r~l~G~~~g~~~~~~~~~i~~~~~----------~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~------~~gw~~  175 (394)
T PRK10213        112 LIGRACLGLALGGFWAMSASLTMRLVP----------PRTVPKALSVIFGAVSIALVIAAPLGSFLGE------LIGWRN  175 (394)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHcC----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hcCHHH
Confidence            568999999999999998888888887          4689999999999999999999999987753      247898


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHH-HHHHHHHHHHHHhhcc
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPL-FAYSGLQQAFVWAEFT  160 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~-~~~~g~~~~f~~~~~~  160 (326)
                      .|.+..++.++..+.. ..+.|+++++++  +    ..+       +..+.+++|+....... +.......++ ...++
T Consensus       176 ~f~~~~~l~~~~~l~~-~~~~p~~~~~~~--~----~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~  240 (394)
T PRK10213        176 VFNAAAVMGVLCIFWI-IKSLPSLPGEPS--H----QKQ-------NTFRLLQRPGVMAGMIAIFMSFAGQFAF-FTYIR  240 (394)
T ss_pred             HHHHHHHHHHHHHHHH-HHHCCCCCcccc--c----chh-------HHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            8876544333322221 111122111110  0    011       12345677776553322 1211111111 12222


Q ss_pred             cccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHH
Q 020441          161 KEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM  238 (326)
Q Consensus       161 ~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (326)
                      +.+. +..|.  +..+.....++++..+++++.|++.||.+++ .++....+.......+.  .+.++     ++...+.
T Consensus       241 p~~~-~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~l~--~~~~~-----~~~~~~~  311 (394)
T PRK10213        241 PVYM-NLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALVLT--LWGSD-----KIVATGV  311 (394)
T ss_pred             HHHH-HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHH--HHhhh-----HHHHHHH
Confidence            2222 22343  4678888899999999999999999996544 23332222222222211  12222     2455667


Q ss_pred             HHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          239 AALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       239 ~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .+++|++.+..++...+.+.+..|++...+.+.+....++|..++..+...+
T Consensus       312 ~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l  363 (394)
T PRK10213        312 AIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYA  363 (394)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999889888887654455555556666777777666655

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.64  E-value=3e-14  Score=134.21  Aligned_cols=261  Identities=12%  Similarity=0.071  Sum_probs=144.7

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.|..+++...+++|..+          +++|++..|++.....+|.++|+.+...+..      ..+||.
T Consensus       110 ~~~r~l~G~g~g~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~------~~~w~~  173 (426)
T PRK12307        110 TLSRFIVGMGMAGEYACASTYAVESWP----------KHLKSKASAFLVSGFGIGNIIAAYFMPSFAE------AYGWRA  173 (426)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhCC----------HhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc------cCCHHH
Confidence            568999999999999998889999988          4589999999988888888888776654432      246888


Q ss_pred             hHHHHHHHHHHHHHHHHHccC--Cccccc-cch-hhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHH----HHHHHHH
Q 020441           82 LFIVFLGVITLGTILMCFLRK--EEDKGE-KET-ADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA----YSGLQQA  153 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~--~~~~~~-~~~-~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~----~~g~~~~  153 (326)
                      .|.+..    +..++.++++.  |++++. +++ .+++++++..+++.-++..+++++++.......+.    +.+....
T Consensus       174 ~f~i~~----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (426)
T PRK12307        174 AFFVGL----LPVLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWP  249 (426)
T ss_pred             HHHHHH----HHHHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence            776432    22222333322  211110 000 00000001111111112233455655432221111    1111101


Q ss_pred             HHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 020441          154 FVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLG  231 (326)
Q Consensus       154 f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~  231 (326)
                      . .+.++ .+..+ .|.  ...+....+.+++..++.++.|++.||++||+ .+..+.+.......... ..+++.    
T Consensus       250 ~-~~~~~-~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~----  320 (426)
T PRK12307        250 I-FGLLP-TYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK-TFSIGLLMSFLFIFPLF-RIPQDN----  320 (426)
T ss_pred             H-HHHHH-HHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHH-HHcccc----
Confidence            1 11122 22222 243  35677778888999999999999999999885 65555554443322211 112221    


Q ss_pred             hHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          232 TLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       232 ~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      .....+..+.++.......+..+.++.+.+|++ +..+.+..+....+|..+++.+...+.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~  381 (426)
T PRK12307        321 YLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG  381 (426)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence            111111222222333334455667888999976 466888777778888888888877664

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.64  E-value=8.9e-14  Score=128.76  Aligned_cols=255  Identities=12%  Similarity=0.041  Sum_probs=148.0

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|+++|++.+..++...+++.|..+          +++|++..|+.......+..+|+.++..+..      .++||.
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~~~~~  146 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFP----------KEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV------WFSWHA  146 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HcChHH
Confidence            467899999999999988888888887          4589999999998889999999888766543      246888


Q ss_pred             hHHHHHHHHHHHHHHH-HHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHH-HHHHHHHHhhc
Q 020441           82 LFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYS-GLQQAFVWAEF  159 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~-g~~~~f~~~~~  159 (326)
                      .|.+...+..+..++. +++|++.++++++        +.+.++..++..+.+++|+.+......... .....+. ...
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  217 (377)
T PRK11102        147 IFWVLALAAILAAALVFFFIPETLPKERRQ--------PFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFL-TAG  217 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCcccccC--------CCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH-HcC
Confidence            7876655555554433 4455432221111        011122233344567787765433221111 1111111 111


Q ss_pred             cccccccccc--chhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHH-HHHhcccCCCCCcchHHHH
Q 020441          160 TKEIVTPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL-WILINYSVTSGVLGTLYPL  236 (326)
Q Consensus       160 ~~~~~~~~lg--~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~-~~~l~~~~~~~~~~~~~~~  236 (326)
                       +.+..+..|  .++.+......++...+++++.|++.||+++|+ .+..+.+......+ +......+..    .+...
T Consensus       218 -~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  291 (377)
T PRK11102        218 -PFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALN-MLRFGLWIQFIMGIWLVVSALLDLG----FWALV  291 (377)
T ss_pred             -HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhhh----HHHHH
Confidence             112222233  347788888999999999999999999999885 55555544332211 1111111111    12233


Q ss_pred             HHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHH-HHHHHHHHHHHh
Q 020441          237 IMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVW-QCASIAVVFFIG  287 (326)
Q Consensus       237 ~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~-~~~g~~i~~~i~  287 (326)
                      +...+.+.+.+...........+..|+++..+.+.++.. .++|..++....
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        292 VGVAAFVGCVSMISSNAMAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344445555555555666777786666666654443 456666666554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.63  E-value=1.8e-13  Score=127.36  Aligned_cols=249  Identities=14%  Similarity=0.061  Sum_probs=141.2

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.|..++....++.+..+          +++|++..|++......+..+|+.++..+..      ..+||.
T Consensus        95 ~~~r~l~G~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~------~~gwr~  158 (382)
T PRK10091         95 AIGRLVSGFPHGAFFGVGAIVLSKIIK----------PGKVTAAVAGMVSGMTVANLLGIPLGTYLSQ------EFSWRY  158 (382)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCC----------hHHhhHHHHHHHHHHHHHHHHhccHHHHHhh------hccHHH
Confidence            568999999999988877777777776          4578999999988888999888888765543      246998


Q ss_pred             hHHHHHHHHHHHHHH-HHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH-HHhhc
Q 020441           82 LFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAF-VWAEF  159 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f-~~~~~  159 (326)
                      .|.+...+..+..+. ..++|+++++++ .          +.++    .++.+++++......... .+....+ +.+..
T Consensus       159 ~f~~~~~~~~~~~~~~~~~lp~~~~~~~-~----------~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  222 (382)
T PRK10091        159 TFLLIAVFNIAVLASIYFWVPDIRDEAK-G----------GLRE----QFHFLRSPAPWLIFAATM-FGNAGVFAWFSYI  222 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCcccc-c----------CHHH----HHHHhcChHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            887665444443332 233444321111 0          0111    123456665544332211 1111111 11222


Q ss_pred             ccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHH
Q 020441          160 TKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLI  237 (326)
Q Consensus       160 ~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (326)
                      ++ +..+..|.  +..++...+.+++..++.++.|++.||+++++ ++..+..+..+..+.. ....++     ++...+
T Consensus       223 ~~-~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~-~~~~~~~~~~i~~~~~-~~~~~~-----~~~~~~  294 (382)
T PRK10091        223 KP-YMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR-IAAVTDFIIVLALLML-FFFGGM-----KTASLI  294 (382)
T ss_pred             HH-HHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh-HHHHHHHHHHHHHHHH-HHHHhh-----HHHHHH
Confidence            22 23333343  46788888999999999999999999999885 5555544444333221 112222     133344


Q ss_pred             HHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          238 MAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       238 ~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ..++++.+.....+.......+..++++..+.+..+....+|.++++.+...+
T Consensus       295 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~Gp~~~G~l  347 (382)
T PRK10091        295 FAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAYCGGMM  347 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            45555665555454444333333333333333334555667777777766544

>TIGR00897 2A0118 polyol permease family

Probab=99.63  E-value=2.2e-13  Score=127.65  Aligned_cols=259  Identities=16%  Similarity=0.101  Sum_probs=146.2

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhH-HHHHHHHHHHhcCCCCCCCCCch
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQ-FVGNLITLAVLKDDKGGSTSGTT   80 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~-iiG~li~~~~~~~~~~~~~~~~~   80 (326)
                      +..|+++|++.+........++.+..+          +++||+..|+..+..+.+. ++|+.++..+...      .+|+
T Consensus       109 ~~~~~i~G~g~~~~~~~~~~~~~~~~~----------~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~------~g~~  172 (402)
T TIGR00897       109 LLFYGIRGLGYPLFAYSFLVWVVYNTK----------QDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA------FGEM  172 (402)
T ss_pred             HHHHHHHHcchHHHHhHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------cchH
Confidence            457889999988877766666667666          3589999999998888886 5777776443221      2322


Q ss_pred             hhHHHHHHHHHHHHHHHHH-ccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH-HHHHHhh
Q 020441           81 LLFIVFLGVITLGTILMCF-LRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQ-QAFVWAE  158 (326)
Q Consensus        81 ~~f~~~~~i~~l~~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~-~~f~~~~  158 (326)
                      ..+........++.++.++ .+++.++++++ ++   .+..+.+   +....+++||+........+..... .++  ..
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  243 (402)
T TIGR00897       173 NTLWSALAFVLTGGVIALFSNKDIFTPQHMQ-TR---EKFSELG---KAATILFTNPNVLLGGMVRIINTIGLFGF--AV  243 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCCCCccccc-CC---cchhhHH---HHHHHHHcChhHHHHHHHHHHHHHHHHHH--HH
Confidence            2222212122233333333 33321111111 00   0111112   2223466788876544222221111 111  12


Q ss_pred             cccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHH-HHHHHh-cccCCCCCcchHH
Q 020441          159 FTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVV-FLWILI-NYSVTSGVLGTLY  234 (326)
Q Consensus       159 ~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~-~~~~~l-~~~~~~~~~~~~~  234 (326)
                      +.+.+.+ ..|.+  +.+....+.+++..++++..|++.||++||+.....+.+..... ..+.+. ....+.    .+.
T Consensus       244 ~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~----~~~  318 (402)
T TIGR00897       244 FLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHS----FAV  318 (402)
T ss_pred             HHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCc----HHH
Confidence            2223332 24543  55666777888999999999999999998753322222222221 111111 111111    244


Q ss_pred             HHHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          235 PLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       235 ~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      .++..+++|++.+...+ ..+.+.+..|+++..+++.++..+.+|..+++.+...+.
T Consensus       319 ~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~  374 (402)
T TIGR00897       319 ALIIAIALGIFLAGYVP-LAAVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFI  374 (402)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667788888877654 456677777877788999999999999999998887664

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.63  E-value=1.7e-13  Score=128.02  Aligned_cols=277  Identities=13%  Similarity=0.075  Sum_probs=158.5

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|+++|++.+..+.+...++.+..+          +++|++..|+.......+.++|+.++..+..      ..+|+.
T Consensus       116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~------~~g~~~  179 (399)
T PRK05122        116 LLGRLLLGIGESLAGTGSILWGIGRVG----------ALHTGRVISWNGIATYGALAIGAPLGVLLYH------WGGLAG  179 (399)
T ss_pred             HHHHHHHHhhHHhhcchHHHHHHhhcC----------hhhhccchhhhhhhhhHHHHHHHHHHHHHHH------cccHHH
Confidence            567999999999999888777777777          4589999998888888899999998876654      246886


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhccc
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTK  161 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~  161 (326)
                      .+.+..+   ++.+..++.++.+++++++ .     ++.+.++.+|+.++   ..  .......+..+....+. ..   
T Consensus       180 ~~~~~~~---~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~-~~---  241 (399)
T PRK05122        180 LGLLIML---LALLGLLLARPRPAVPPVK-G-----ERLPFRRVLGRVWP---YG--MGLALASIGFGTIATFI-TL---  241 (399)
T ss_pred             HHHHHHH---HHHHHHHHHhcCCCCCCCC-c-----cchhHHHHHHHHHH---HH--HHHHHHHHHHHHHHHHH-HH---
Confidence            6654332   2222223333211111111 0     11123333332111   10  00100011111111111 11   


Q ss_pred             ccccccccchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHH
Q 020441          162 EIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAAL  241 (326)
Q Consensus       162 ~~~~~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  241 (326)
                       +.. ..|.+..+.....++++..++.++.|++.||+++|+ .+..+..+........  ...++     ++..++..++
T Consensus       242 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~-~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~l  311 (399)
T PRK05122        242 -YYA-ARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLR-VAIVSLLVEILGLLLL--WLAPS-----PWMALIGAAL  311 (399)
T ss_pred             -HHH-HcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHH--HHhcc-----HHHHHHHHHH
Confidence             111 123344455667788888999999999999999885 5555544433332221  12232     2445566788


Q ss_pred             HhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020441          242 LGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS----LQAMLIVMVVGICVALVGILFLTIQ  316 (326)
Q Consensus       242 ~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  316 (326)
                      +|++.+...+.......+..|++ +..+++.++..+.+|.+++..+...+.    .....++..+..+++.+......++
T Consensus       312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  391 (399)
T PRK05122        312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRR  391 (399)
T ss_pred             HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            89998888877777777888866 466888899888888887766665553    2222333334445555554444444


Q ss_pred             HhhccC
Q 020441          317 VEKAFY  322 (326)
Q Consensus       317 ~~~~~~  322 (326)
                      .+|+++
T Consensus       392 ~~~~~~  397 (399)
T PRK05122        392 APRAVP  397 (399)
T ss_pred             ccccCC
Confidence            444443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.62  E-value=2.4e-13  Score=127.17  Aligned_cols=274  Identities=17%  Similarity=0.147  Sum_probs=159.9

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|++.|++.+ .+.....++.+..+          +++|++..|+.....+.+..+|+.++..+..      ..+||.
T Consensus       111 ~~~~~~~g~~~~-~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~~~~~  173 (408)
T PRK09874        111 LILRALLGLLGG-FVPNANALIATQVP----------RNKSGWALGTLSTGGVSGALLGPLAGGLLAD------SYGLRP  173 (408)
T ss_pred             HHHHHHHHHhhh-hHHhHHHHHHHhcC----------HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCHHH
Confidence            467888998755 34444445555555          4588999999988888999998888766543      236887


Q ss_pred             hHHHHHHHHHHHHHHH-HHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHH-HHHHHHHHHHHHHHhhc
Q 020441           82 LFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLII-PLFAYSGLQQAFVWAEF  159 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~-p~~~~~g~~~~f~~~~~  159 (326)
                      .|.+..++.++..++. +++|++.++.+++       ++.+.    ++..+.+++++..+.. ...+......+.....+
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (408)
T PRK09874        174 VFFITASVLFLCFLVTLFCIRENFQPVSKK-------EMLHM----REVVTSLKNPKLVLSLFVTTLIIQVATGSIAPIL  242 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCcccccch-------hhhHH----HHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776665555554443 3444432211110       01111    2334456777764322 11121121111111111


Q ss_pred             cccccccccc-ch----hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHH
Q 020441          160 TKEIVTPALG-VS----GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLY  234 (326)
Q Consensus       160 ~~~~~~~~lg-~~----~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~  234 (326)
                      + .+..+..+ .+    ..+....+.++...++.+..|++.||++||+ .+..+........+.  +.+.++     ++.
T Consensus       243 ~-~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~-~~~~~~~~~~~~~~~--~~~~~~-----~~~  313 (408)
T PRK09874        243 T-LYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK-ILITALIFSVLLLIP--MSFVQT-----PLQ  313 (408)
T ss_pred             H-HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-hHHHHHHHHHHHHHH--HHHhcc-----HHH
Confidence            1 12111111 11    2345556678888899999999999999885 555555444333322  122233     245


Q ss_pred             HHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHH
Q 020441          235 PLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS----LQAMLIVMVVGICVALVG  309 (326)
Q Consensus       235 ~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~----~~~~~~~~~~~~~~~~~~  309 (326)
                      .++..+++|++++...+...+.+.+..|++ +...++.++..+.+|..+++.+...+.    .....++..++.+++.+.
T Consensus       314 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~  393 (408)
T PRK09874        314 LGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVY  393 (408)
T ss_pred             HHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence            566778889999999988888888877765 466788888889999999888887653    223333444444444444


Q ss_pred             HHH
Q 020441          310 ILF  312 (326)
Q Consensus       310 ~~~  312 (326)
                      ...
T Consensus       394 ~~~  396 (408)
T PRK09874        394 SWN  396 (408)
T ss_pred             HHH
Confidence            433

>PRK03699 putative transporter; Provisional

Probab=99.62  E-value=2.7e-13  Score=126.65  Aligned_cols=252  Identities=14%  Similarity=0.015  Sum_probs=147.8

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|.++|++.|..++....+++|..|          +++|++..+........+..+++.+...+...     ..+||.
T Consensus        99 ~~~~~l~G~~~g~~~~~~~~~i~~~~~----------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~gw~~  163 (394)
T PRK03699         99 SIAMFVLGVVSGITMSIGTFLITHVYE----------GKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR-----SIEWYW  163 (394)
T ss_pred             HHHHHHHHHhhHhhccchhHHhhhhcc----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccHHH
Confidence            467899999999988877778888776          45789888887777777777777776544321     247998


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHHHHHHhhcc
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIP-LFAYSGLQQAFVWAEFT  160 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p-~~~~~g~~~~f~~~~~~  160 (326)
                      .|.+..++.++..++.++.+.|+.+++++  ++   ++..    .|    ...+++..++.. .+++...+.++  ..+.
T Consensus       164 ~f~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~---~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  228 (394)
T PRK03699        164 VYACIGLVYVAIFILTLFSEFPALGKHAP--KA---DKPV----AK----EKWGIGVLFLAIAALLYILAQLTF--ISWV  228 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCccccccCc--cc---cCcc----cc----ccCChHHHHHHHHHHHHHHHHHHH--HHHH
Confidence            88765544444444444433332221111  00   0000    01    111333322221 12222111111  1222


Q ss_pred             cccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHH
Q 020441          161 KEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM  238 (326)
Q Consensus       161 ~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (326)
                      +.+.++..|.  .+.+....++.++..++.++.|++.||+++|+ .+............. + ...++.     ....+.
T Consensus       229 p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~-~l~~~~~~~~~~~~~-~-~~~~~~-----~~~~~~  300 (394)
T PRK03699        229 PEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR-ILTVLAGLALVLMYL-F-VNTDDP-----SHLLYA  300 (394)
T ss_pred             HHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh-HHHHHHHHHHHHHHH-H-HHcCCc-----hHHHHH
Confidence            3344444454  36777788888899999999999999999885 444333332222211 1 122332     334445


Q ss_pred             HHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          239 AALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       239 ~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      .+++|++.+...+...+...+..|++++...+.......+|+.+++.+..++.
T Consensus       301 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~  353 (394)
T PRK03699        301 ILGLGFFSSAIYTTIITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIV  353 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            67788877777777777777777766555667666677788888887776553

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.62  E-value=1.5e-13  Score=130.77  Aligned_cols=289  Identities=10%  Similarity=-0.020  Sum_probs=148.1

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhH-HHHHHHHHHHhcCCCCCCCCCch
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQ-FVGNLITLAVLKDDKGGSTSGTT   80 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~-iiG~li~~~~~~~~~~~~~~~~~   80 (326)
                      +..|+++|++.|..++.....+.+..+          +++||+..|++....+.+. ..|.++......      ..+||
T Consensus       124 ~~~~~l~gi~~g~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~------~~gw~  187 (452)
T PRK11273        124 FVLLFLCGWFQGMGWPPCGRTMVHWWS----------QKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW------FNDWH  187 (452)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHhCC----------hHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH------hccHH
Confidence            456889999999888776666777766          3579999999877777665 445444333321      13688


Q ss_pred             hhHHHHHHHHHHHHH-HHHHccCCcccc---ccch--h---h---hchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 020441           81 LLFIVFLGVITLGTI-LMCFLRKEEDKG---EKET--A---D---ASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYS  148 (326)
Q Consensus        81 ~~f~~~~~i~~l~~~-l~~~l~~~~~~~---~~~~--~---~---~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~  148 (326)
                      ..|.+..++..+..+ ..+++|+++++.   ++++  .   +   .++.++.+.++.+++  .++++++...........
T Consensus       188 ~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~  265 (452)
T PRK11273        188 AALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQ--YVLPNKLLWYIAIANVFV  265 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHH--HHHcChHHHHHHHHHHHH
Confidence            888766555555433 345565433221   0000  0   0   000111123332221  245677654432222221


Q ss_pred             HHHHHHHHhhccccccccccc--chhhHHHHHHHHHHHHHHHhhhhhhccCC--CChhhHHHHHHHHHHHHHHHHHhccc
Q 020441          149 GLQQAFVWAEFTKEIVTPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGL--PSITFIVSGGAIAQVVVFLWILINYS  224 (326)
Q Consensus       149 g~~~~f~~~~~~~~~~~~~lg--~~~~~~~~~~~gi~~~i~~~~~G~l~d~~--g~~~~i~~~g~i~~~~~~~~~~l~~~  224 (326)
                      ....... ..+.+.+.++..|  ....+....+++++..++.++.|+++||+  +||.........+.........+...
T Consensus       266 ~~~~~~~-~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~  344 (452)
T PRK11273        266 YLLRYGI-LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPA  344 (452)
T ss_pred             HHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcc
Confidence            1111111 1222334444334  34667777788888999999999999998  44421222111211111111111111


Q ss_pred             CCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHH-HHHHhhhhh----HHHHHHH
Q 020441          225 VTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAV-VFFIGPYIS----LQAMLIV  298 (326)
Q Consensus       225 ~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i-~~~i~~~~~----~~~~~~~  298 (326)
                      ++     +....+..+++|..........++...+.+|++ +..+.+..+....+|+++ ++.+...+.    .....++
T Consensus       345 ~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~  419 (452)
T PRK11273        345 GN-----PTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMV  419 (452)
T ss_pred             cC-----hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHH
Confidence            11     122223333444433222333455667888876 567888888877777654 566655443    2233344


Q ss_pred             HHHHHHHHHHHHHHHH
Q 020441          299 MVVGICVALVGILFLT  314 (326)
Q Consensus       299 ~~~~~~~~~~~~~~~~  314 (326)
                      +.+.++++.+...+..
T Consensus       420 ~~~~~~~~~~~~~~~~  435 (452)
T PRK11273        420 MIGGSILAVILLIVVM  435 (452)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            5555556655555443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.61  E-value=1.8e-13  Score=129.50  Aligned_cols=265  Identities=11%  Similarity=-0.023  Sum_probs=148.9

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|++.|++.|..|+...+++.+..++          ++||+..|+.....+++..+|+.+...+..      ..+||.
T Consensus       115 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~----------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~------~~gw~~  178 (434)
T PRK11663        115 ALLWVLNAFFQGWGWPVCAKLLTAWYSR----------TERGGWWAIWNTAHNVGGALIPLVVGAIAL------HYGWRY  178 (434)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHhCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cccHHH
Confidence            3568889999999998888888888873          589999999999999999999888766543      247998


Q ss_pred             hHHHHHHHHHHHH-HHHHHccCCcccc---cc-----chhhh-c--hhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 020441           82 LFIVFLGVITLGT-ILMCFLRKEEDKG---EK-----ETADA-S--VNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSG  149 (326)
Q Consensus        82 ~f~~~~~i~~l~~-~l~~~l~~~~~~~---~~-----~~~~~-~--~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g  149 (326)
                      .|.+..++.++.. +..+++|+++++.   ++     +..+. +  +.++.+.++.++.  +.++|++...+....+...
T Consensus       179 ~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  256 (434)
T PRK11663        179 GMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTK--YVLLNPYIWLLSFSYVLVY  256 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHH--HHhcChHHHHHHHHHHHHH
Confidence            8876654444333 3344555432211   00     00000 0  0011123332221  2456777655432222221


Q ss_pred             HHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCC--CChhhHHHHHHHHHHHHHHHHHhcccC
Q 020441          150 LQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGL--PSITFIVSGGAIAQVVVFLWILINYSV  225 (326)
Q Consensus       150 ~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~--g~~~~i~~~g~i~~~~~~~~~~l~~~~  225 (326)
                      ...... ..+.+.+..+..|.  .+.+....+++++..+++++.|++.||+  ++|+.......+.......... ..+.
T Consensus       257 ~~~~~~-~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~-~~~~  334 (434)
T PRK11663        257 VVRAAI-NDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLW-LMPF  334 (434)
T ss_pred             HHHHHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHH-Hccc
Confidence            111111 11222344334454  3667778888899999999999999998  3222221111111111111111 1111


Q ss_pred             CCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          226 TSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       226 ~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ..    ........+.+|++....++......++.+|++ +..+.+..+....+|.++++.....+
T Consensus       335 ~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l  396 (434)
T PRK11663        335 AS----YVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKV  396 (434)
T ss_pred             cc----HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHH
Confidence            11    122333344455544333344456678888765 56788889999999999988777655

>TIGR00898 2A0119 cation transport protein

Probab=99.61  E-value=1.6e-13  Score=132.29  Aligned_cols=259  Identities=14%  Similarity=0.019  Sum_probs=156.0

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..++...+++.|..+          +++|++..++....+..|.+++++++..+.         +||.
T Consensus       184 ~~~r~l~G~~~~~~~~~~~~~~~e~~~----------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~wr~  244 (505)
T TIGR00898       184 LVFRLLVGMGIGGIWVQAVVLNTEFLP----------KKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---------DWRW  244 (505)
T ss_pred             HHHHHHHHhhccchHHHHHHHhheecC----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------HHHH
Confidence            568999999999999999999999998          458999999888888888888888876542         2888


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccc----cccchhhh------c-----hhh---hhHHHH---HH---HHHHHhhcchh
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDK----GEKETADA------S-----VNF---YSYLVS---LS---KSITTLLADVR  137 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~----~~~~~~~~------~-----~~~---~~~~~~---~~---k~~~~~~~~~~  137 (326)
                      .|.+..+..++..+..+++|++.+.    .+.++.++      +     ...   .....+   .-   .+..+++++|+
T Consensus       245 ~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  324 (505)
T TIGR00898       245 LQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPN  324 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChH
Confidence            8877766666655556666643210    00000000      0     000   000000   00   12344566776


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHH
Q 020441          138 MLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL  217 (326)
Q Consensus       138 ~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~  217 (326)
                      ............+...+.  ++...+....++.+ ......+.++.+..+.++.+++.||+|||+ .+..+.++..+..+
T Consensus       325 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~grr~-~~~~~~~~~~~~~l  400 (505)
T TIGR00898       325 LRKTTLCLMMLWFTTAFS--YYGLVLDLGNLGGN-IYLDLFISGLVELPAKLITLLLIDRLGRRY-TMAASLLLAGVALL  400 (505)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHhccccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHH
Confidence            654432222222222111  11111111222322 223445678888899999999999999985 55555554443332


Q ss_pred             HHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhh
Q 020441          218 WILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       218 ~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~  288 (326)
                      ...  +.++..   .....+..++.+++.+...+..+.+..|.+|++ +..+.+..+....+|+.+++.+..
T Consensus       401 ~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~  467 (505)
T TIGR00898       401 LLL--FVPVDL---YFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY  467 (505)
T ss_pred             HHH--HcCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence            211  122211   133344455556666666778889999999977 577889888999999999988876

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.61  E-value=7.7e-14  Score=133.50  Aligned_cols=268  Identities=12%  Similarity=0.055  Sum_probs=164.1

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..++...+++.|..|+          ++|++..|++......+..+|+.++..+..      ..+||.
T Consensus        94 ~~~~~~~G~~~~~~~~~~~~~i~~~~~~----------~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~------~~~w~~  157 (485)
T TIGR00711        94 IIFRVIQGFGGGPLIPLSFSTLLNIYPP----------EKRGRAMAIWGLTVLVAPALGPTLGGWIIE------NYHWRW  157 (485)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHCCH----------HHHHHHHHHHHHHHHHHhhhhhccHhHhcc------CcCcee
Confidence            5789999999999999998999999884          589999999988889999999888765543      246887


Q ss_pred             hHHHHHHHHHHHHHHHH-HccCCcccccc--chh-----------------hhchhhh-hH--H---------------H
Q 020441           82 LFIVFLGVITLGTILMC-FLRKEEDKGEK--ETA-----------------DASVNFY-SY--L---------------V  123 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~-~l~~~~~~~~~--~~~-----------------~~~~~~~-~~--~---------------~  123 (326)
                      .|.+...++++..++.. ++|++++++++  |..                 +.+.... .+  .               .
T Consensus       158 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (485)
T TIGR00711       158 IFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVV  237 (485)
T ss_pred             hhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            77766555555444433 34432221110  000                 0000000 00  0               0


Q ss_pred             HHHH-----HHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhcc
Q 020441          124 SLSK-----SITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTT  196 (326)
Q Consensus       124 ~~~k-----~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d  196 (326)
                      ++.+     .-.+++++|+........+..++.. +....+.+.+.++..|.  .+.++.+...+++..+++++.|++.|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~  316 (485)
T TIGR00711       238 WELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGL-YGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGD  316 (485)
T ss_pred             HHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            0000     0123556666544322222222111 11112222344444454  36788888899999999999999999


Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHH
Q 020441          197 GLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVW  275 (326)
Q Consensus       197 ~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~  275 (326)
                      |++||+ ++..+..+......+......++.+   ........++.|++.+...+.......+..|++ +..+.+.++..
T Consensus       317 r~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  392 (485)
T TIGR00711       317 KIDPRK-LVTIGLILYAVGFYWRAFTFTPDTP---FLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFT  392 (485)
T ss_pred             hcCcHH-HHHHHHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHH
Confidence            999985 6666655544433322212333321   233455577889998888777777776777865 46688899999


Q ss_pred             HHHHHHHHHHHhhhh
Q 020441          276 QCASIAVVFFIGPYI  290 (326)
Q Consensus       276 ~~~g~~i~~~i~~~~  290 (326)
                      +.+|++++..+...+
T Consensus       393 ~~~g~~ig~~i~g~~  407 (485)
T TIGR00711       393 RQLGGSIGTALITTI  407 (485)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988877654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.61  E-value=8.5e-14  Score=129.61  Aligned_cols=269  Identities=13%  Similarity=0.074  Sum_probs=154.3

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..++...+++.|..+          +++|++..|++......|.++|+.+...+....    ..+||.
T Consensus       104 ~~~~~l~G~~~~~~~~~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~----~~~w~~  169 (405)
T TIGR00891       104 FIARLVIGIGMGGEYGSSAAYVIESWP----------KHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW----GDGWRA  169 (405)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHhCC----------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CccHHH
Confidence            467999999999999998899999888          468999999999999999999998887665422    135888


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccccchhhh--chh------hhhHHHHHHHHH----HHhhc-chh-hHHHHHHHHH
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGEKETADA--SVN------FYSYLVSLSKSI----TTLLA-DVR-MLLIIPLFAY  147 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~--~~~------~~~~~~~~~k~~----~~~~~-~~~-~lll~p~~~~  147 (326)
                      .|.+..+...+..+....+|++++.+++++.++  ++.      ++...++..++.    .+..+ ++. ...+......
T Consensus       170 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (405)
T TIGR00891       170 LFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLF  249 (405)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHH
Confidence            776543333333232333443221111000000  000      000001111111    11111 111 1111111111


Q ss_pred             HHHHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccC
Q 020441          148 SGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSV  225 (326)
Q Consensus       148 ~g~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~  225 (326)
                      .+...... ..+.+.+..+..|.  .+.+......+++..+++++.|++.||++||+ .+..+.+......... ....+
T Consensus       250 ~~~~~~~~-~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~-~~~~~~~~~~~~~~~~-~~~~~  326 (405)
T TIGR00891       250 ANLYSHPI-QDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK-AYVCSLLAGQLLIIPV-FAIGA  326 (405)
T ss_pred             HHHHHhhh-hhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh-hhHHHHHHHHHHHHHH-HHhCC
Confidence            11110001 11112233333443  46778888899999999999999999999885 5555544332221111 12222


Q ss_pred             CCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhhH
Q 020441          226 TSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYISL  292 (326)
Q Consensus       226 ~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~~  292 (326)
                      +     .+...+..++.|++.+...+..++.+.+.+|++ +..+++..+....+|..+++.+...+..
T Consensus       327 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~  389 (405)
T TIGR00891       327 N-----VAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ  389 (405)
T ss_pred             c-----hHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2     133344445666666666777788899999876 5778889899999999999998877653

>TIGR00901 2A0125 AmpG-related permease

Probab=99.60  E-value=1.4e-13  Score=126.64  Aligned_cols=252  Identities=12%  Similarity=0.109  Sum_probs=146.3

Q ss_pred             HHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcC--CCCCCCCCchhh
Q 020441            5 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD--DKGGSTSGTTLL   82 (326)
Q Consensus         5 ~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~--~~~~~~~~~~~~   82 (326)
                      .++.|++.+...++..+++.|..|          +++|++..|+.......|.++|+.++..+...  .++...|+||..
T Consensus        90 ~~~~~~~~~~~~~~~~a~~~~~~~----------~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~  159 (356)
T TIGR00901        90 AFLIAFFSATQDIALDAWRLEILS----------DEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI  159 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC----------HhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH
Confidence            445666777777777788888887          46899999999988999999999888655432  223446779999


Q ss_pred             HHHHHHHHHHHHHHHHHc-cCCccccccchhhhchhhhhHHHHHHHHHHHhhcchh---hHHHHHHHHHHHHHHHHHHhh
Q 020441           83 FIVFLGVITLGTILMCFL-RKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVR---MLLIIPLFAYSGLQQAFVWAE  158 (326)
Q Consensus        83 f~~~~~i~~l~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~---~lll~p~~~~~g~~~~f~~~~  158 (326)
                      |.+..++.++..+..+++ |++.++++++ +    +++.+.++.+++   ++++++   ...+....+..........+.
T Consensus       160 f~i~ai~~l~~~~~~~~~~~e~~~~~~~~-~----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (356)
T TIGR00901       160 FFWTALLILPGLLVTLFLAKEPQEDASVP-K----PLTQAVLKPIRE---FFQRKNMIQALLLLLLIVLYKLGDSAATVL  231 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCcccccc-h----hHHHHHHHHHHH---HHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            987766555555444443 3332211111 0    111122333333   334443   332221211111111111112


Q ss_pred             cccccccccccc--hhhHHHHHHHH-HHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHH-HHHhcccCC-C--CCcc
Q 020441          159 FTKEIVTPALGV--SGVGGAMAVYG-AFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL-WILINYSVT-S--GVLG  231 (326)
Q Consensus       159 ~~~~~~~~~lg~--~~~~~~~~~~g-i~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~-~~~l~~~~~-~--~~~~  231 (326)
                      ++ .+..+ +|.  ++.+.+..+.+ +...++.++.|++.||+|+|+ .+..+.++...... ..+.....+ .  +..+
T Consensus       232 ~~-~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (356)
T TIGR00901       232 TT-LFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY-ALLLFGIVQALTNAGFVWLASNGHHDGITFPH  308 (356)
T ss_pred             HH-HHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHHHHHHHhcCcccccccch
Confidence            22 23233 444  36666666666 467789999999999999875 44444444443322 111111110 0  0001


Q ss_pred             hHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHH
Q 020441          232 TLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQC  277 (326)
Q Consensus       232 ~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~  277 (326)
                      .+....+.++.+++.+..++...+++.+.+|++. .+.++.++..++
T Consensus       309 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       309 LLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            2445666778899999999999999999999874 668887766543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.60  E-value=1e-13  Score=133.48  Aligned_cols=265  Identities=13%  Similarity=0.071  Sum_probs=159.2

Q ss_pred             CchhHHhhhhhhhhhhccccceeccc-chhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCc
Q 020441            1 MVPASLYLGFAASIIWVGEGTYLTAA-ALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGT   79 (326)
Q Consensus         1 li~a~~l~G~~~g~~w~a~~~~~~~~-a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~   79 (326)
                      ++.+|+++|+|.+..+++....+.+. .+          +++|++..|++......+..+|+.++..+...      .+|
T Consensus        97 li~~r~l~G~g~~~~~~~~~~~l~~~~~~----------~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~------~gw  160 (495)
T PRK14995         97 LIATRALLAIGAAMIVPATLAGIRATFTE----------EKQRNMALGVWAAVGSGGAAFGPLVGGILLEH------FYW  160 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CCh
Confidence            36789999999999887655545443 34          35899999999999999999999998777542      469


Q ss_pred             hhhHHHHHHHHHHHHHHH-HHccCCcccccc--chhhh-----------------chhhhhH-----------------H
Q 020441           80 TLLFIVFLGVITLGTILM-CFLRKEEDKGEK--ETADA-----------------SVNFYSY-----------------L  122 (326)
Q Consensus        80 ~~~f~~~~~i~~l~~~l~-~~l~~~~~~~~~--~~~~~-----------------~~~~~~~-----------------~  122 (326)
                      |..|.+...+.++..++. .++|++++++++  |....                 ......+                 .
T Consensus       161 r~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~  240 (495)
T PRK14995        161 GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFI  240 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHH
Confidence            988877665555554443 445543221111  10000                 0000000                 0


Q ss_pred             HHHHHH-----HHHhhcchhhHHHHHHHHHHHHH-HHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhh
Q 020441          123 VSLSKS-----ITTLLADVRMLLIIPLFAYSGLQ-QAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRL  194 (326)
Q Consensus       123 ~~~~k~-----~~~~~~~~~~lll~p~~~~~g~~-~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l  194 (326)
                      ..+.+.     -.++++++.........+..+.. .++  ..+.+.+.+...|.+  +.+..+..+++...+++++.|++
T Consensus       241 ~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l  318 (495)
T PRK14995        241 RTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGF--ELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGIL  318 (495)
T ss_pred             HHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            001000     02455666544322222222211 111  112223444444543  78888999999999999999999


Q ss_pred             ccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhHHH
Q 020441          195 TTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLK  273 (326)
Q Consensus       195 ~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~  273 (326)
                      .||+|+|+ ++..+.++.......... ...+.+   .+......++.|++.+...+.......+..|+++ ..+.+.++
T Consensus       319 ~~r~g~~~-~~~~g~~~~~~~~~~l~~-~~~~~~---~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~  393 (495)
T PRK14995        319 VSRLGLRL-VATGGMALSALSFYGLAM-TDFSTQ---QWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIET  393 (495)
T ss_pred             HHHcCchH-HHHHHHHHHHHHHHHHHH-hcCCCc---hHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHH
Confidence            99999885 666666555443322211 122211   2344566788899999988888887778888664 55777888


Q ss_pred             HHHHHHHHHHHHHhh
Q 020441          274 VWQCASIAVVFFIGP  288 (326)
Q Consensus       274 ~~~~~g~~i~~~i~~  288 (326)
                      +.+.+|.+++..+..
T Consensus       394 ~~~~lG~~~G~ai~g  408 (495)
T PRK14995        394 MAYELGAGLGIAIFG  408 (495)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888777665554

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.59  E-value=3.6e-13  Score=125.27  Aligned_cols=245  Identities=12%  Similarity=0.100  Sum_probs=142.5

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..++.....+.+..+          +++|++..|++....+.|..+|+.+...+....      .+..
T Consensus        98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------~~~~  161 (381)
T PRK03633         98 LAWRFVAGIGCAMIWVVVESALMCSGT----------SRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL------MSVL  161 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc------cchH
Confidence            578999999999998865555555555          358999999998888999999988876653211      1112


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhccc
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTK  161 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~  161 (326)
                      .+.. . +.+.+.+..++.+.++++++ +  +    +..+.+       +.+++|+........+..+......++..+ 
T Consensus       162 ~~~~-~-~~~~~~~~~~~~~~~~~~~~-~--~----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp-  224 (381)
T PRK03633        162 PWVT-G-LVLAAILPLLFTRILNQQAE-N--H----DSTSIW-------PMLKLRQARLGVNGCIISGIVLGSLYGLMP-  224 (381)
T ss_pred             HHHH-H-HHHHHHHHHHHhcccCCCCC-C--C----CCCCHH-------HHHHhcchHHHHHHHHHHHHHHHHHHHHHH-
Confidence            2211 1 11122222233332211111 1  0    111122       234566554433223333332222222222 


Q ss_pred             ccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHH
Q 020441          162 EIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMA  239 (326)
Q Consensus       162 ~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  239 (326)
                      .+..+ .|.  +.++....+.+++..+++...|++.||+++|+ ++..+........... .   +.      .......
T Consensus       225 ~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~-~l~~~~~~~~~~~~~~-~---~~------~~~~~~~  292 (381)
T PRK03633        225 LYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL-VLRVQVFVVILGSIAM-L---SQ------AAMAPAL  292 (381)
T ss_pred             HHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH-HHHHHHHHHHHHHHHH-h---hh------HHHHHHH
Confidence            23222 243  36677778888899999999999999999885 5555544444332221 1   11      1123345


Q ss_pred             HHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          240 ALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       240 ~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +++|++.....+...+...+..|+++ ..+.+.++...++|.++++.+...+-
T Consensus       293 ~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~  345 (381)
T PRK03633        293 FILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLM  345 (381)
T ss_pred             HHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677777777888888888887654 44556777888899999998887663

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.59  E-value=7.8e-13  Score=123.91  Aligned_cols=252  Identities=15%  Similarity=0.103  Sum_probs=136.9

Q ss_pred             HHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhhHH
Q 020441            5 SLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFI   84 (326)
Q Consensus         5 ~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~f~   84 (326)
                      .++.|+..+....+..+++.|..|          +++|+++.++....++.+.++|+.+...+...     .++||..|.
T Consensus       101 ~~~~~~~~~~~~~~~~al~~~~~~----------~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~-----~~gw~~~f~  165 (402)
T PRK11902        101 AVLVAFLSASQDIVFDAYSTDVLH----------PEERGAGAAVKVLGYRLAMLVSGGLALWLADR-----VLGWGNTYL  165 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC----------hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc-----ccCHHHHHH
Confidence            445566677777777778888877          45899999999988899999998887766431     147999887


Q ss_pred             HHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 020441           85 VFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV  164 (326)
Q Consensus        85 ~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~  164 (326)
                      +..++..+..+..+++|+++++++++  +   +.+++.++   +..+++++|+...+....+.......+..+..+. +.
T Consensus       166 i~a~~~l~~~l~~~~~~e~~~~~~~~--~---~~~~~~~~---~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~-~l  236 (402)
T PRK11902        166 LMAGLMLAGALTTLWAPEPEVPARPP--R---SLGEAVVG---PLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTT-FL  236 (402)
T ss_pred             HHHHHHHHHHHHHHhcCCCccccccc--c---hhHHHHHH---HHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHH-HH
Confidence            76655544444444554433221111  0   00111222   2334667776654332222221111111111111 22


Q ss_pred             cccccc--hhhHHHHHHHHH-HHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHH-HHHhcccCCCCCcchHHHHHHH-
Q 020441          165 TPALGV--SGVGGAMAVYGA-FDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL-WILINYSVTSGVLGTLYPLIMA-  239 (326)
Q Consensus       165 ~~~lg~--~~~~~~~~~~gi-~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~-  239 (326)
                      .+..|.  +.+++.....+. +..++.++.|++.||+++|+ .+..+.+......+ +..+...+++    .+...... 
T Consensus       237 ~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~-~l~~~~~~~~l~~l~~~~~~~~~~~----~~~~~~~~~  311 (402)
T PRK11902        237 IRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR-SLMLFGVLQAVSNLGYWVLAVTPKH----LWTMALAIG  311 (402)
T ss_pred             HHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHhcCCc----HHHHHHHHH
Confidence            233444  466776655554 57889999999999999875 44444433332221 1112232222    13222222 


Q ss_pred             ---HHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhh
Q 020441          240 ---ALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       240 ---~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~  288 (326)
                         +..|++.+...+....++.+.+|.+   .++.+....++|..++..++.
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~G  360 (402)
T PRK11902        312 IENLCGGMGTAAFVALLMALCNRSFSAT---QYALLSALASVGRVYVGPTSG  360 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHH---HHHHHHHHHHHHHHHHHHHHH
Confidence               3456667777777777877777744   344444444555543333333

>PRK10133 L-fucose transporter; Provisional

Probab=99.59  E-value=3.8e-13  Score=127.46  Aligned_cols=261  Identities=10%  Similarity=0.039  Sum_probs=150.2

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhc-CCC--------
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK-DDK--------   72 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~-~~~--------   72 (326)
                      +.+|+++|+|.|..+++..+++.+.+++          +++++..+++.+.+++|..+|.+++..+.. ...        
T Consensus       121 l~~r~l~G~g~g~~~~~~~~~v~~~~~~----------~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~  190 (438)
T PRK10133        121 LVGLFIIAAGLGCLETAANPFVTVLGPE----------SSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLD  190 (438)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHhCCh----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhh
Confidence            5789999999999999999998887663          355556788888888999999888765431 100        


Q ss_pred             -----CCCC------CCchhhHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHH
Q 020441           73 -----GGST------SGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLI  141 (326)
Q Consensus        73 -----~~~~------~~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll  141 (326)
                           +...      .+||.+|.....+..+..++..+.+.|+.+++++ .+   ++..+..+   +..+++++|+....
T Consensus       191 ~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~-~~---~~~~~~~~---~~~~ll~~~~~~~~  263 (438)
T PRK10133        191 KMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH-SD---AKQGSFSA---SLSRLARIRHWRWA  263 (438)
T ss_pred             ccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc-cc---ccccchhh---hHHHHHhCchHHHH
Confidence                 0001      2466666433322222222222322232221111 00   01111112   12235667765432


Q ss_pred             -HHHHHHHHHHHHHHHhhccccc-ccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHH
Q 020441          142 -IPLFAYSGLQQAFVWAEFTKEI-VTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL  217 (326)
Q Consensus       142 -~p~~~~~g~~~~f~~~~~~~~~-~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~  217 (326)
                       ...+++.+.+.+.+ +..+ .+ .++..|.+  ..++.+..++++..+++++.|++.||+++|+ ++..+.++......
T Consensus       264 ~l~~~~~~~~~~~~~-~~~~-~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~-~l~~~~~~~~~~~~  340 (438)
T PRK10133        264 VLAQFCYVGAQTACW-SYLI-RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK-VLAAYALIAMALCL  340 (438)
T ss_pred             HHHHHHHHHHHHHHH-HHHH-HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHH
Confidence             22334444433322 1122 23 23344544  6788899999999999999999999999885 55555444332222


Q ss_pred             HHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          218 WILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       218 ~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      . . ...++      ...+...+++|++.+...+..++...+.+|++...+-+... .+..|+++.+.+-..+.
T Consensus       341 ~-~-~~~~~------~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~-~~~~g~~~~~~i~G~l~  405 (438)
T PRK10133        341 I-S-AFAGG------HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVS  405 (438)
T ss_pred             H-H-HHcCC------hHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHh-HHhccchHHHHHHHHHH
Confidence            1 1 12222      12245567889999999999999999998876444444333 34456666655555443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.58  E-value=5.2e-13  Score=125.08  Aligned_cols=250  Identities=12%  Similarity=0.045  Sum_probs=152.9

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..++++|++.+..+++..+++.+..|          +++|++..|+.....+.+..+|+.++..+..       ++||.
T Consensus       103 ~~~~~l~g~~~~~~~~~~~~~~~~~~~----------~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~-------~g~~~  165 (400)
T PRK11646        103 WLSCILSGLGGTLFDPPRTALVIKLIR----------PHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ-------YDFRL  165 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhHHH
Confidence            467899999999999888888888877          4689999999999999999999999876652       36887


Q ss_pred             hHHHHHHHHHHHHHH-HHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH-HHhhc
Q 020441           82 LFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAF-VWAEF  159 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f-~~~~~  159 (326)
                      .|.+..++.++..++ ..++|++ +++++         +++.++..   .+.++||+.+.....  ..++...+ ....+
T Consensus       166 ~f~~~~~~~~~~~i~~~~~~~~~-~~~~~---------~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  230 (400)
T PRK11646        166 VCATGAVLFVLAAAFNAWLLPAY-KLSTV---------RTPVREGM---TRVLRDKRFVTYVLT--LTGYYMLAVQVMLM  230 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcc-ccccc---------chhhHHHH---HHHHcCchHHHHHHH--HHHHHHHHHHHHHh
Confidence            776655444444333 3334322 11110         01112222   235677776543221  12211111 11122


Q ss_pred             cccccccccc-chhhHHHHHHHHHHHHHHHhhhhhhccC-CCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHH
Q 020441          160 TKEIVTPALG-VSGVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLI  237 (326)
Q Consensus       160 ~~~~~~~~lg-~~~~~~~~~~~gi~~~i~~~~~G~l~d~-~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (326)
                      .+.+.++..+ ....+....+.++....+....+++.|| .+.++ .+..+.++......+  +...++     +....+
T Consensus       231 ~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~~~~~~~~~~--l~~~~~-----~~~~~~  302 (400)
T PRK11646        231 LPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEH-RLMAGLLIMSLSMFP--IGMVSN-----LQQLFT  302 (400)
T ss_pred             hhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-HHHHHHHHHHHHHHH--HHHhhh-----HHHHHH
Confidence            2233333222 2356666666666666555566777665 44343 444444443333222  222233     233445


Q ss_pred             HHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          238 MAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       238 ~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      ..++++++.+...+..++++.+..|++ +..+++.++...++|..+++.+...+.
T Consensus       303 ~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~  357 (400)
T PRK11646        303 LICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLF  357 (400)
T ss_pred             HHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHH
Confidence            567788888888889999999999865 577899999999999999998887664

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.58  E-value=1.4e-12  Score=125.30  Aligned_cols=259  Identities=14%  Similarity=0.063  Sum_probs=145.6

Q ss_pred             hhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhh
Q 020441            3 PASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLL   82 (326)
Q Consensus         3 ~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~   82 (326)
                      +.++++|++.+....+..++++|..|          +++||+..++......+|.++|+.+...+...     .+|||..
T Consensus       112 ~~~~l~~~~~a~~~i~~~a~~~~~~~----------~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~-----~~GWr~~  176 (491)
T PRK11010        112 ALAVVIAFCSASQDIVFDAWKTDVLP----------AEERGAGAAISVLGYRLAMLVSGGLALWLADR-----YLGWQGM  176 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC----------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccCHHHH
Confidence            46778888888888888888888888          45899999999988899999998887766431     2479999


Q ss_pred             HHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 020441           83 FIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKE  162 (326)
Q Consensus        83 f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~  162 (326)
                      |.+..+++++..+..+++|+++++++++   ++  .+.+..+.+++   .+++++........+.......+.....+ .
T Consensus       177 f~i~a~l~ll~~l~~~~~~e~~~~~~~~---~~--~~~~~~~~l~~---~~~~~~~~~~ll~~~l~~~~~~~~~~~~~-~  247 (491)
T PRK11010        177 YWLMAALLIPCIIATLLAPEPTDTIPVP---KT--LEQAVVAPLRD---FFGRNNAWLILLLIVLYKLGDAFAMSLTT-T  247 (491)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccccccc---cc--hhhhHHHHHHH---HHcCcCHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            9877666666555555565443221111   00  01111222333   34455433222111222122211111112 2


Q ss_pred             cccccccc--hhhHHHHH-HHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHH-HHHHhcccCCCCCcchHHHHHH
Q 020441          163 IVTPALGV--SGVGGAMA-VYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVF-LWILINYSVTSGVLGTLYPLIM  238 (326)
Q Consensus       163 ~~~~~lg~--~~~~~~~~-~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~-~~~~l~~~~~~~~~~~~~~~~~  238 (326)
                      +..+..|.  +.++.... ...++.+++.++.|++.||+++|+ .+..+.++..... ....+...+++    .......
T Consensus       248 ~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~-~l~i~~~l~~l~~l~~~~l~~~~~~----~~~l~~~  322 (491)
T PRK11010        248 FLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR-ALMIFGILQGVSNAGYWLLSITDKN----LYSMGAA  322 (491)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHhcccc----HHHHHHH
Confidence            32333454  36677663 444688899999999999999875 4433333333221 11112222211    1222323


Q ss_pred             HHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          239 AALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       239 ~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .++..++.+...+...++..++.|++ ..+.++..+...++|..++..+...+
T Consensus       323 ~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l  375 (491)
T PRK11010        323 VFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWF  375 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344456666667765 46678888888888877665555544

>PRK12382 putative transporter; Provisional

Probab=99.58  E-value=5.9e-13  Score=124.13  Aligned_cols=246  Identities=15%  Similarity=0.087  Sum_probs=148.6

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..+++..+++.+..|          +++|++..|+.......+..+|+.++..+..      ..+||.
T Consensus       116 ~~~r~l~G~~~~~~~~~~~~~~~~~~~----------~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~------~~g~~~  179 (392)
T PRK12382        116 VVGRLILGFGESQLLTGALTWGLGLVG----------PKHSGKVMSWNGMAMYGALAAGAPLGLLLHS------HFGFAA  179 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCC----------ccccchhhhHHHHHHHHHHHHHHHHHHHHHh------ccChHH
Confidence            467999999999999887777777776          4689999999887778888899888766543      236876


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhccc
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTK  161 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~  161 (326)
                      .+.+..   ++..+...+.++.+++++++  +    ++.+.++..|    .+..+...... .....+....+. ..   
T Consensus       180 ~~~~~~---~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~-~~---  241 (392)
T PRK12382        180 LALTTM---VLPLLAWAFNGTVRKVPAHA--G----ERPSLWSVVG----LIWKPGLGLAL-QGVGFAVIGTFV-SL---  241 (392)
T ss_pred             HHHHHH---HHHHHHHHHHHhccCCCCCc--c----cCchHHHHHH----HHHHhHHHHHH-HHHHHhHHHHHH-HH---
Confidence            554322   12222222333211111111  0    1112333322    22222221111 001111111111 11   


Q ss_pred             ccccccccchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHH
Q 020441          162 EIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAAL  241 (326)
Q Consensus       162 ~~~~~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  241 (326)
                       +..+ .+.+..++....++++..+++++.|++.||+++|+ .+..+..+....+...  ...++     ....++..++
T Consensus       242 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~-~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~l  311 (392)
T PRK12382        242 -YFAS-KGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVK-VAIVSLLVETVGLLLL--WLAPT-----AWVALAGAAL  311 (392)
T ss_pred             -HHHh-cCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCe-ehHHHHHHHHHHHHHH--HHccc-----HHHHHHHHHH
Confidence             1111 23344556667788888999999999999999885 5555555444443322  12232     2445566788


Q ss_pred             HhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          242 LGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       242 ~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +|++.+...+...+.+.+.+|++ +..+++.++....+|.++++.+...+.
T Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~  362 (392)
T PRK12382        312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLA  362 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89998888888888888888865 577899999999999999888887664

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.58  E-value=1.4e-13  Score=132.81  Aligned_cols=273  Identities=15%  Similarity=-0.009  Sum_probs=143.5

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCC-C-----C--
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD-K-----G--   73 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~-~-----~--   73 (326)
                      +.+|+++|++.|..++...+|++|..|          +++||+..++......+|..+|+.++..+.... +     +  
T Consensus       119 ~~~r~l~G~~~g~~~~~~~~~~~e~~p----------~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~  188 (502)
T TIGR00887       119 CFWRFWLGVGIGGDYPLSAIITSEFAT----------KKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADE  188 (502)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHhcC----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence            578999999999999999999999999          469999999999999999999998887654211 0     0  


Q ss_pred             ---------CCCCCchhhHHHHHHHHHHHHHHHHHccCCcc-----ccccchhh--------------hch-h----hhh
Q 020441           74 ---------GSTSGTTLLFIVFLGVITLGTILMCFLRKEED-----KGEKETAD--------------ASV-N----FYS  120 (326)
Q Consensus        74 ---------~~~~~~~~~f~~~~~i~~l~~~l~~~l~~~~~-----~~~~~~~~--------------~~~-~----~~~  120 (326)
                               ..+++||.+|.+-...+++..+..+++|++.+     ++++++.+              .++ .    +.+
T Consensus       189 ~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (502)
T TIGR00887       189 ASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDEVEKASTAVE  268 (502)
T ss_pred             ccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCcccccchhcccc
Confidence                     12368998886544334444444456665422     11111000              000 0    000


Q ss_pred             HHHHHHHHHHHhhcchhhHH--HHHHHHHHHHHHHHHH-hhcccccccccccch--h-----------hHH-HHHHHHHH
Q 020441          121 YLVSLSKSITTLLADVRMLL--IIPLFAYSGLQQAFVW-AEFTKEIVTPALGVS--G-----------VGG-AMAVYGAF  183 (326)
Q Consensus       121 ~~~~~~k~~~~~~~~~~~ll--l~p~~~~~g~~~~f~~-~~~~~~~~~~~lg~~--~-----------~~~-~~~~~gi~  183 (326)
                      ..+...++.++-.+.++...  +.....+.+....++. ..+.+.+.+ ..|.+  .           ... ...+..++
T Consensus       269 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (502)
T TIGR00887       269 VPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAG  347 (502)
T ss_pred             chhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence            00111222222111122211  1111111222222221 111111211 12221  0           011 12334445


Q ss_pred             HHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHH-hhhhHHhhhhhHhhHHhhcc
Q 020441          184 DAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALL-GIGDGVLNTQLSALLGILFK  262 (326)
Q Consensus       184 ~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~-G~~d~~~~~~~~~il~~~f~  262 (326)
                      ..++.++.+.+.||+|||+ +++.+..+..++.........+.+    .........+. .++.....+..+.+.+|.+|
T Consensus       348 ~i~g~~~~~~l~dr~gRR~-~l~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p  422 (502)
T TIGR00887       348 TVPGYWVTVFLVDIIGRKP-IQLMGFFILTVLFFVLGFAYNHLS----THGFLAIYVLAQFFANFGPNATTFIVPGEVFP  422 (502)
T ss_pred             HHHHHHHHHHHhhhhcchh-HHHHHHHHHHHHHHHHHHHHHhcc----hhHHHHHHHHHHHHHhcCCCchhhhhhhccCc
Confidence            6668888899999999995 655555443333221111111111    01111111111 12222344555667789999


Q ss_pred             CC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          263 HD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       263 ~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ++ |..+.+..+....+|+.++..+.+++
T Consensus       423 ~~~R~~~~g~~~~~~~~~~~~~~~~~~~l  451 (502)
T TIGR00887       423 TRYRSTAHGISAASGKAGAIIGQFGFLYL  451 (502)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHhhhh
Confidence            87 67789988889999998888777655

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.58  E-value=4.5e-13  Score=123.72  Aligned_cols=250  Identities=15%  Similarity=0.060  Sum_probs=143.5

Q ss_pred             hhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchh--hhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCch
Q 020441            3 PASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIG--SFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTT   80 (326)
Q Consensus         3 ~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g--~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~   80 (326)
                      ..|+++|.+.+...+...++..|..++          ++|+  .+.+......+.+..+|+.++..+..      ..+||
T Consensus        92 ~~~~~~g~~~~~~~p~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~------~~~~~  155 (375)
T TIGR00899        92 VLGVLLSSFASTANPQLFALAREHADR----------TGREAVMFSSVMRAQISLAWVIGPPLAFWLAL------GFGFT  155 (375)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHhhh----------cchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH------hcccH
Confidence            457777766666665544454554442          2333  34677766778888898888776643      24689


Q ss_pred             hhHHHHHHHHHHHHHHH-HHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHH-HHHHHHHHHHHhh
Q 020441           81 LLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLF-AYSGLQQAFVWAE  158 (326)
Q Consensus        81 ~~f~~~~~i~~l~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~-~~~g~~~~f~~~~  158 (326)
                      ..|.+...+.++..++. +++|+++++++++  +    ++.+.+       +.+++|+...+.... +..+....+. ..
T Consensus       156 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  221 (375)
T TIGR00899       156 VMFLTAALAFVLCGVLVWLFLPSYPRGAPGA--L----TRLEVR-------GLLASRDTRLLFVACTLMWGCNILYI-IN  221 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcccCcccc--c----Ccchhh-------hhhcCcchHHHHHHHHHHHHHHHHHH-hh
Confidence            88877665555554443 3465432221111  0    111111       134455544322211 1111111111 11


Q ss_pred             cccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHH
Q 020441          159 FTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPL  236 (326)
Q Consensus       159 ~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~  236 (326)
                      + +.+..+..|.  .+.+...........++.++.|++.||+++|+ .+..+.+........  +...++     .+..+
T Consensus       222 ~-~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-~~~~~~~~~~~~~~~--~~~~~~-----~~~~~  292 (375)
T TIGR00899       222 M-PLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR-LMLLAALAGVAFYTG--LAADNS-----LWALL  292 (375)
T ss_pred             h-HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh-HHHHHHHHHHHHHHH--HHHHHH-----HHHHH
Confidence            1 2233333443  35666666666677788899999999999885 555444433322221  112222     23445


Q ss_pred             HHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          237 IMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       237 ~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +..++.|++.+...+..+....+..|+++..+.+.++....+|..+++.+...+.
T Consensus       293 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~  347 (375)
T TIGR00899       293 MLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILA  347 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567778888877777888888999887767888888888899999888877653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00895 2A0115 benzoate transport

Probab=99.58  E-value=1.4e-13  Score=127.71  Aligned_cols=262  Identities=16%  Similarity=0.080  Sum_probs=155.0

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..++++|++.+..++...+++.|..|+          ++|++..|+......++..+|+.+...+..      ..+|+.
T Consensus       109 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~g~~~  172 (398)
T TIGR00895       109 LILRFLAGLGLGGLMPNLNALVSEYAPK----------RFRGTAVGLMFCGYPIGAAVGGFLAGWLIP------VFGWRS  172 (398)
T ss_pred             HHHHHHHhcccccchhhHHHHHHHHcCH----------HhhchhHhhHhhHHHHHHHHHHHHHHHHhh------ccccee
Confidence            4678999999999999999999998883          589999999988889999999988765543      235776


Q ss_pred             hHHHHHHHHHHHH-HHHHHccCCccc---cccchh-h--------------hchhhhhHHHHHHHHHHHhhcc----hhh
Q 020441           82 LFIVFLGVITLGT-ILMCFLRKEEDK---GEKETA-D--------------ASVNFYSYLVSLSKSITTLLAD----VRM  138 (326)
Q Consensus        82 ~f~~~~~i~~l~~-~l~~~l~~~~~~---~~~~~~-~--------------~~~~~~~~~~~~~k~~~~~~~~----~~~  138 (326)
                      .|.+..++..+.. +...++|++.+.   +++++. +              ++.++.+...+..++..+.+++    ++.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (398)
T TIGR00895       173 LFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARIT  252 (398)
T ss_pred             ehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHH
Confidence            6665533333333 334455543211   100000 0              0000000000111222222222    222


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHH
Q 020441          139 LLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVF  216 (326)
Q Consensus       139 lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~  216 (326)
                      ..+.............. ..+.+ +..+..|.  +..+......+++..+++++.|++.||+++| .+.....+......
T Consensus       253 ~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~  329 (398)
T TIGR00895       253 VLLWLLYFMLLVGVYFL-TNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR-VTALLLLLGAVFAV  329 (398)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHH
Confidence            21111111111111111 11111 22222333  4677788888999999999999999999987 35433333322222


Q ss_pred             HHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhh
Q 020441          217 LWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY  289 (326)
Q Consensus       217 ~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~  289 (326)
                      .. .. ..++     ....++..+++|++.+..++...+++.+.+|++ +..+++.+.....+|..+++.+...
T Consensus       330 ~~-~~-~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~  396 (398)
T TIGR00895       330 LV-GS-TLFS-----PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY  396 (398)
T ss_pred             HH-HH-HhhC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            21 11 1122     245566778889999999999999999999976 5678899999999999998887654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.58  E-value=7.8e-13  Score=139.45  Aligned_cols=267  Identities=17%  Similarity=0.168  Sum_probs=160.5

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCC----CCCCCC
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD----KGGSTS   77 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~----~~~~~~   77 (326)
                      +..|+++|++.+..+++..+++.+..+          +++|++.+|+.....++|.++|.+++..+....    .+...+
T Consensus       107 ~~~r~l~G~~~~~~~~~~~~~i~~~~~----------~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~  176 (1146)
T PRK08633        107 FAVTFLLGAQSAIYSPAKYGIIPELVG----------KENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILG  176 (1146)
T ss_pred             HHHHHHHHHHHHhhchHHHhhhHHhcC----------cccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence            568999999999999999999999998          568999999999999999999999987765320    000011


Q ss_pred             CchhhHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHh
Q 020441           78 GTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWA  157 (326)
Q Consensus        78 ~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~  157 (326)
                      .+...+.+...+.+++.++.+++|+...++++.+.+.+   ....++..+....+++++.....+...............
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  253 (1146)
T PRK08633        177 RIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKK---YLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQA  253 (1146)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccc---cccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            12222222222233333444455443222111100000   011111112222345566554433222222211111112


Q ss_pred             hcccccccccccc--h-hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHH
Q 020441          158 EFTKEIVTPALGV--S-GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLY  234 (326)
Q Consensus       158 ~~~~~~~~~~lg~--~-~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~  234 (326)
                      .++ .+....+|.  . ..++...+.+++.++++++.|++.||+++++ ++..+.++..+..+.  +.+.++     .+.
T Consensus       254 ~~~-~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~-~~~~~~~~~~~~~~~--~~~~~~-----~~~  324 (1146)
T PRK08633        254 NFP-AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG-LVPLGALGLALSLFL--LPTAPS-----LAS  324 (1146)
T ss_pred             hhH-HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc-chhHHHHHHHHHHHH--HHHhhh-----HHH
Confidence            222 233333444  3 5688888899999999999999999998774 544454443333222  122222     245


Q ss_pred             HHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          235 PLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       235 ~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .++..+++|++.+...+..++++.+..|++ +..+++.+++.+.+|..++..+...+
T Consensus       325 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l  381 (1146)
T PRK08633        325 VLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLF  381 (1146)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            567778889999998888899999998876 57788899999988887766665544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.58  E-value=5.3e-13  Score=124.23  Aligned_cols=251  Identities=10%  Similarity=-0.021  Sum_probs=155.1

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|+++|.+.+..++...++..+.            +++|++..|.......+|.++|+.++..+..      ..|||.
T Consensus        98 ~~~~~l~~~~~~~~~p~~~al~~~~------------~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~------~~g~~~  159 (382)
T TIGR00902        98 FIAIGLFALFFSAGMPIGDALANTW------------QKQFGLDYGKVRLIGSAAFIIGSALFGGLIG------MFDEQN  159 (382)
T ss_pred             HHHHHHHHHHHccchhHHHHHHHHH------------HHHcCCCccHHHHHHHHHHHHHHHHHHHHHH------HcChhH
Confidence            3567777777777666544443221            2367888898888889999999998776654      247887


Q ss_pred             hHHHHHHHHHHHHHHHHHccCC-ccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcc
Q 020441           82 LFIVFLGVITLGTILMCFLRKE-EDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFT  160 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~  160 (326)
                      .|.+...+. +..++.+.++++ +++++++  +++.+   +    .++..++++||+...+....+........+.+.++
T Consensus       160 ~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~---~----~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~  229 (382)
T TIGR00902       160 ILAILTAGL-AFMLIGFLIKPTIPPKDAIP--EDESQ---G----DSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSA  229 (382)
T ss_pred             HHHHHHHHH-HHHHHHHHcCCCCCCCcccc--ccccc---c----chhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776554322 222222333322 1111111  10001   1    12233467888876544333322222222223333


Q ss_pred             cccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHH
Q 020441          161 KEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM  238 (326)
Q Consensus       161 ~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (326)
                       .+.++ .|.+  .+|....+..+.+++..++.||+.||+++|+ ++..+.+.....+..  ..+.++     ++..++.
T Consensus       230 -~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~-~l~~~~~~~~~~~~~--~~~~~~-----~~~~~~~  299 (382)
T TIGR00902       230 -IYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD-LLLISAIACVGRWAI--IGAIEA-----FPLIFLL  299 (382)
T ss_pred             -HHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH-HHHHHHHHHHHHHHH--HHhHhh-----HHHHHHH
Confidence             23333 4544  7788888899999999999999999999885 666676666655432  233343     3556777


Q ss_pred             HHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhHHH-HHHHHHHHHHHHHhhhhh
Q 020441          239 AALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLK-VWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       239 ~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~-~~~~~g~~i~~~i~~~~~  291 (326)
                      .++.|+..+...+....++.+. |++. ..+.+.|+ ...++|.+++..++.++.
T Consensus       300 q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~  353 (382)
T TIGR00902       300 QILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIY  353 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999888888887 7653 45666776 456788888888887664

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.57  E-value=8.8e-14  Score=131.90  Aligned_cols=275  Identities=13%  Similarity=0.052  Sum_probs=147.0

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..++....++.|..+          +++|++..++.......|..+|++++......   ....+||.
T Consensus       131 ~~~r~l~G~~~~~~~~~~~~~i~~~~~----------~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~---~~~~~w~~  197 (481)
T TIGR00879       131 IVGRVLLGIGVGIASALVPMYLSEIAP----------KALRGALTSLYQLAITFGILVAYGFGSGKVSL---NNTLGWRI  197 (481)
T ss_pred             HHHHHHHHhhhhHHHhHHHHHHHccCC----------hhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcC---CCCccHHH
Confidence            568999999999999999999999998          46899999999888889998888887111111   12357998


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCcc-----ccccchhhh--c----hhhhhHHHH------------------HHHHHHHh
Q 020441           82 LFIVFLGVITLGTILMCFLRKEED-----KGEKETADA--S----VNFYSYLVS------------------LSKSITTL  132 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~-----~~~~~~~~~--~----~~~~~~~~~------------------~~k~~~~~  132 (326)
                      .|.+.....++..+..+++|+...     +++++..+.  +    ..+.....+                  ..++.++.
T Consensus       198 ~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (481)
T TIGR00879       198 PLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSS  277 (481)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhc
Confidence            887754444444444555654321     110000000  0    000000000                  00111111


Q ss_pred             hcc--hhhHHHHHHHHHHHHHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHH
Q 020441          133 LAD--VRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGG  208 (326)
Q Consensus       133 ~~~--~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g  208 (326)
                      .++  ++.....................+.+.+. +..|.  ...+......+++..++.++.|++.||++||+ .+..+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~  355 (481)
T TIGR00879       278 TRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIF-ENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRP-LLLIG  355 (481)
T ss_pred             CchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-HHHHH
Confidence            111  11111111111110000000011111111 12333  35567778888889999999999999999885 55555


Q ss_pred             HHHHHHHHHHHH-hcccCCCCC--cchHHHH-HHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHH
Q 020441          209 AIAQVVVFLWIL-INYSVTSGV--LGTLYPL-IMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVV  283 (326)
Q Consensus       209 ~i~~~~~~~~~~-l~~~~~~~~--~~~~~~~-~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~  283 (326)
                      .++...+.+... .......+.  ......+ ...+..+.....+.+....++.+.+|++ +..+.+..+....+|..++
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~  435 (481)
T TIGR00879       356 AAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIV  435 (481)
T ss_pred             HHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            444443332211 111111100  0012222 2222223333334566677779999976 5678888899999999988


Q ss_pred             HHHhhhhh
Q 020441          284 FFIGPYIS  291 (326)
Q Consensus       284 ~~i~~~~~  291 (326)
                      ..+.+.+.
T Consensus       436 ~~~~~~~~  443 (481)
T TIGR00879       436 GFLFPTML  443 (481)
T ss_pred             HHHHHHHH
Confidence            88876553

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.57  E-value=6.9e-13  Score=123.40  Aligned_cols=253  Identities=11%  Similarity=-0.009  Sum_probs=148.3

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|.+.|++.+..+.+..++..+..            ++|++..|.......++..+|+.++..+...      .|||.
T Consensus        98 ~i~~~l~g~~~~~~~~~~~a~~~~~~------------~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~------~g~~~  159 (382)
T PRK11128         98 FVAIGLFNLFFSPLVPLTDALANTWQ------------KQIGLDYGKVRLWGSIAFVIGSALTGKLVSW------FGEQA  159 (382)
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHHH------------hhccCCcchHHHHHHHHHHHHHHHHHHHHHH------cChhH
Confidence            35677888888888876554443331            2456666666666689999999998877542      46888


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhccc
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTK  161 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~  161 (326)
                      .|.+..+...+..+..++.|++++++++   +++ .+ + .+   ++..+.++||+...+....+..+.....+...++ 
T Consensus       160 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~-~-~~---~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~-  229 (382)
T PRK11128        160 ILWILTAGVASMLLGQLLRPTIMPQGES---RQQ-ES-A-GW---PAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSA-  229 (382)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCCCcccc---ccc-cc-c-cc---chHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHH-
Confidence            7765543332322222223322111111   110 00 0 01   1223466788776544333322222211212222 


Q ss_pred             ccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHH
Q 020441          162 EIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMA  239 (326)
Q Consensus       162 ~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  239 (326)
                      .+..+ .|.  ...+....+..+.+.+..++.|++.||+++++ .+..+.+.....+..  +.+.++     ++..++..
T Consensus       230 ~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~-~l~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~  300 (382)
T PRK11128        230 IYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD-LLLLSAICGVVRWGL--MGSTTA-----LPWLIVIQ  300 (382)
T ss_pred             HHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHHHH--HHhhhh-----HHHHHHHH
Confidence            23222 343  36788888888889999999999999999885 655565554444322  223333     35566778


Q ss_pred             HHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHH-HHHHHHHHHHHHHhhhhh
Q 020441          240 ALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLK-VWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       240 ~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~-~~~~~g~~i~~~i~~~~~  291 (326)
                      +++|++.+..++.....+.+..++++....+.++ ..+++|..+++.+...+.
T Consensus       301 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~  353 (382)
T PRK11128        301 ILHCGTFTVCHLAAMRYIAARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLY  353 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999988888888888765454555666665 555677778888777664

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.57  E-value=1.1e-12  Score=122.46  Aligned_cols=251  Identities=12%  Similarity=0.055  Sum_probs=143.4

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..+....+++.|..+          +++|++..|+.......+..+|++++..+..      ..+||.
T Consensus        95 ~~~~~l~g~~~~~~~~~~~~~i~~~~~----------~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~------~~g~~~  158 (392)
T PRK10473         95 LAGRFLQGIGAGCCYVVAFAILRDTLD----------DRRRAKVLSLLNGITCIIPVLAPVLGHLIML------KFPWQS  158 (392)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHcC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CcChHH
Confidence            467899999999999988888888877          4589999999988888888888888766543      236887


Q ss_pred             hHHHHHHHHHHHHHHH-HHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHH-HHHHHHHHHhhc
Q 020441           82 LFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAY-SGLQQAFVWAEF  159 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~-~g~~~~f~~~~~  159 (326)
                      .|.+..++.++..++. +++|+++++++++  +      .+..   ++..+.++|++.+........ ......+. . +
T Consensus       159 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~  225 (392)
T PRK10473        159 LFYTMAAMGILVLLLSLFILKETRPARAPA--A------SSKP---RENSESLLNRFFLSRLVITTLSVTVILTFV-N-T  225 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCcccCC--c------cchH---HHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-H-h
Confidence            7777665555555443 3444332221111  0      0011   122335667665433222111 11111111 1 1


Q ss_pred             ccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHH
Q 020441          160 TKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLI  237 (326)
Q Consensus       160 ~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (326)
                      .+.+..+.+|.  ...+..+.+.++..+++.++.|++.||+++|+ .+..+.++.....+....  .+..     .....
T Consensus       226 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~-~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~  297 (392)
T PRK10473        226 SPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRT-LMLTSQVLFLAAGITLAL--SPSH-----AVSLF  297 (392)
T ss_pred             CHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHHH--HHHH-----HHHHH
Confidence            11233333444  36677888899999999999999999999885 666665544433322111  1111     22222


Q ss_pred             HHHHHhhhhHHhhhhhHhhHHhhccCC-c-hhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          238 MAALLGIGDGVLNTQLSALLGILFKHD-T-EGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       238 ~~~l~G~~d~~~~~~~~~il~~~f~~~-~-~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      ...+.+.+-+...+.  ....++.|++ + ..+.+.+.+.|.+|.+++..+.....
T Consensus       298 ~~~l~~~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~~g  351 (392)
T PRK10473        298 GITLICAGFSVGFGV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAVLG  351 (392)
T ss_pred             HHHHHHHHHHHHhHH--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            222223322221111  2223344543 3 33455888888888888877776554

>PRK10504 putative transporter; Provisional

Probab=99.56  E-value=9.7e-13  Score=125.74  Aligned_cols=267  Identities=9%  Similarity=-0.011  Sum_probs=160.7

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..+....+++.+..|+          ++|++..|+.....+.+..+|+.++-.+..      ..+||.
T Consensus       102 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~------~~gw~~  165 (471)
T PRK10504        102 LLARVLQGVGGAMMVPVGRLTVMKIVPR----------EQYMAAMTFVTLPGQVGPLLGPALGGLLVE------YASWHW  165 (471)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHcCH----------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHh------hccHHH
Confidence            5689999999999998888888888774          588999999888888999999888766643      246888


Q ss_pred             hHHHHHHHHHHHHHHHHHc-cCCcccccc-chhhh--------------chhhh---hH------------------HHH
Q 020441           82 LFIVFLGVITLGTILMCFL-RKEEDKGEK-ETADA--------------SVNFY---SY------------------LVS  124 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l-~~~~~~~~~-~~~~~--------------~~~~~---~~------------------~~~  124 (326)
                      .|.+...+..++.++.... |+.+.++++ +....              +..+.   .+                  .+|
T Consensus       166 ~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (471)
T PRK10504        166 IFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHA  245 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            7876554455554444333 322211111 10000              00000   00                  000


Q ss_pred             ----HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCC
Q 020441          125 ----LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGL  198 (326)
Q Consensus       125 ----~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~  198 (326)
                          +-+-..++++||+........+..+...+.. ..+.+.|.+...|.  ...++.....+++..++.++.|++.||+
T Consensus       246 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~  324 (471)
T PRK10504        246 RNNNRALFSLKLFRTRTFSLGLAGSFAGRIGSGML-PFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF  324 (471)
T ss_pred             hcCCCCccCHHHhcccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                0001234677877765544333333221111 11112222223343  3667777888888888889999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHH
Q 020441          199 PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQC  277 (326)
Q Consensus       199 g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~  277 (326)
                      ++|+ ++..+.........+... ..++.+   .....+..++.|++.+...+..+.+..+..|++ +..+++.+++.+.
T Consensus       325 g~~~-~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  399 (471)
T PRK10504        325 GYRR-VLVATTLGLALVSLLFML-VALLGW---YYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQ  399 (471)
T ss_pred             CchH-HHHHHHHHHHHHHHHHHh-cccccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHH
Confidence            9885 665565544433222111 111111   122334466778888888888888888888876 4568888899998


Q ss_pred             HHHHHHHHHhhhh
Q 020441          278 ASIAVVFFIGPYI  290 (326)
Q Consensus       278 ~g~~i~~~i~~~~  290 (326)
                      +|.+++..+...+
T Consensus       400 ~g~~ig~~i~g~l  412 (471)
T PRK10504        400 LSMSIGVTIAGLL  412 (471)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888777544

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.55  E-value=1.6e-12  Score=121.45  Aligned_cols=249  Identities=11%  Similarity=-0.011  Sum_probs=142.4

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..++....++.+..+           ++|++..|++.+....+..+|+.++..+...     ..+||.
T Consensus       101 l~~r~l~Gig~~~~~~~~~~~~~~~~~-----------~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~-----~~~w~~  164 (393)
T PRK09705        101 LSSALLGGVGIGIIQAVMPSVIKRRFQ-----------QRTPLVMGLWSAALMGGGGLGAAITPWLVQH-----SETWYQ  164 (393)
T ss_pred             HHHHHHHHhHHHHHhhhhhHHHHHHcc-----------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCHHH
Confidence            578999999999999887776655544           4789999998888888888888887655432     136887


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhccc
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTK  161 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~  161 (326)
                      .+..+....++..+..++.++++++++ + ++    +. +.       .+.+++++...+..................+ 
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~----~~-~~-------~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp-  229 (393)
T PRK09705        165 TLAWWALPAVVALFAWWWQSAREVASS-H-KT----TT-TP-------VRVVFTPRAWTLGVYFGLINGGYASLIAWLP-  229 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccc-c-CC----Cc-CC-------cccccCHhHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            665544333333332232322111111 0 00    00 11       1234566554433222222211111111122 


Q ss_pred             ccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHH
Q 020441          162 EIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMA  239 (326)
Q Consensus       162 ~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  239 (326)
                      .+..+ .|.  ...+....+++++..+++++.|++.||++||+ .+..+..+........ ...+++.     ..  ...
T Consensus       230 ~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~-~~~~~~~l~~~~~~~~-~~~~~~~-----~~--~~~  299 (393)
T PRK09705        230 AFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRK-LLMLALVLQLVGFCGF-IWLPLQL-----PV--LWA  299 (393)
T ss_pred             HHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchH-HHHHHHHHHHHHHHHH-HHccchH-----HH--HHH
Confidence            23222 343  46788889999999999999999999999885 5555544444333221 1122221     11  122


Q ss_pred             HHHhhhhHHhhhhhHhhHHhhccC-C-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          240 ALLGIGDGVLNTQLSALLGILFKH-D-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       240 ~l~G~~d~~~~~~~~~il~~~f~~-~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      ++.|++.+...+.......+.+++ + +...++..+....++..+++.+...+.
T Consensus       300 ~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~  353 (393)
T PRK09705        300 MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR  353 (393)
T ss_pred             HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666555555566653 3 345777777778888888887776664

>PRK11043 putative transporter; Provisional

Probab=99.55  E-value=4.8e-12  Score=118.36  Aligned_cols=251  Identities=12%  Similarity=0.022  Sum_probs=147.2

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..+....+++.|..+          ++++++..+..+....++..+|+.++..+..      ..+||.
T Consensus        98 ~~~~~l~G~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~------~~g~~~  161 (401)
T PRK11043         98 LVLRFVQAVGVCSAAVIWQALVIDRYP----------AQKANRVFATIMPLVALSPALAPLLGAWLLN------HFGWQA  161 (401)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCChHH
Confidence            467899999988777665566666655          3467788888887788888888888766543      236888


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHH-HHHHHHHHHHHhhcc
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLF-AYSGLQQAFVWAEFT  160 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~-~~~g~~~~f~~~~~~  160 (326)
                      .|.+..++.++..+..+++++++++++++      +++.+       ..+.+++|+........ ...+...++. ...+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p  227 (401)
T PRK11043        162 IFATLFAITLLLILPTLRLKPSKKARKQS------QDALT-------FKQLLKSKTYLGNVLIFAACSAAFFAWL-TGSP  227 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCccccc------hHHHH-------HHHHHcChhHHHHHHHHHHHHHHHHHHH-HHhH
Confidence            77766655655555555554332211110      01112       22355666654322111 1111111111 1111


Q ss_pred             cccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHH-HHHhc--ccCCCCCcchHHH
Q 020441          161 KEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL-WILIN--YSVTSGVLGTLYP  235 (326)
Q Consensus       161 ~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~-~~~l~--~~~~~~~~~~~~~  235 (326)
                       .+.+ ..|.  ...++.....+++..+++.+.+++.||+++|+ ....+.+....+.. +....  ..++     +...
T Consensus       228 -~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  299 (401)
T PRK11043        228 -FILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQ-LLPWLLVLFAVSVIAIWLASLLSHPS-----LVPL  299 (401)
T ss_pred             -HHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHHHHHHHHHhccCc-----HHHH
Confidence             1222 2343  36677777788888899999999999998775 33333222222211 11111  1222     2334


Q ss_pred             HHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          236 LIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       236 ~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ++...++|++.+...+.......+..|+++..+.+.++..+..++..+..+.+.+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l  354 (401)
T PRK11043        300 LIPFCVMAAANGAIYPIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSAL  354 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4556677888888888777777777888777788988888776666666665544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.55  E-value=2.1e-12  Score=136.21  Aligned_cols=267  Identities=17%  Similarity=0.103  Sum_probs=166.6

Q ss_pred             CchhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCch
Q 020441            1 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTT   80 (326)
Q Consensus         1 li~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~   80 (326)
                      ++.+|+++|++.+..+.+..+++.+..+          ++++++.+|+..+..+++.++|++++..+...      .+|+
T Consensus       111 l~~~~~l~gi~~a~~~p~~~a~l~~~~~----------~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~------~~~~  174 (1140)
T PRK06814        111 LFAALFLMGIHSALFGPIKYSILPDHLN----------KDELLGANALVEAGTFIAILLGTIIGGLATIS------GNFV  174 (1140)
T ss_pred             HHHHHHHHHHHHHhhchHHHHhhHhhcC----------ccccchhhHHHHHHHHHHHHHHHHHHHHHHhc------cccH
Confidence            3578999999999999999999999998          46899999999999999999999999877542      3677


Q ss_pred             hhHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcc
Q 020441           81 LLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFT  160 (326)
Q Consensus        81 ~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~  160 (326)
                      ..|.....+.+++.++.++++++..+++..  +.+   ....++.......+.+++....+...+....+..+.....+ 
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  248 (1140)
T PRK06814        175 ILVALLMGIAVLGWLASLFIPKTGNAAPDL--KID---RNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQL-  248 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCCCCCCCC--eec---cchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh-
Confidence            766433333444444555565443221111  000   01111111222234566666554433333322222222222 


Q ss_pred             cccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhc---ccCCCC-C-----
Q 020441          161 KEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILIN---YSVTSG-V-----  229 (326)
Q Consensus       161 ~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~---~~~~~~-~-----  229 (326)
                      +.|..+.+|.  ...++.+..++++.++++++.|++.|+..+++ .+..+.++.....+...+.   ..+... .     
T Consensus       249 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  327 (1140)
T PRK06814        249 PLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLL-YVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILV  327 (1140)
T ss_pred             HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeee-eehHHHHHHHHHHHHHHhcccccccccccccchhh
Confidence            2344444554  36788889999999999999999998766553 3333332222211111111   000000 0     


Q ss_pred             ----cchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          230 ----LGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       230 ----~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                          ...+...+..+++|++.+..+...++++.+..|++ +..+++.+++...+|..++..+...+
T Consensus       328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l  393 (1140)
T PRK06814        328 FLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALL  393 (1140)
T ss_pred             hhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence                01244566778889999999999999999999976 56789988999988888877776555

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.53  E-value=3.3e-13  Score=128.83  Aligned_cols=266  Identities=13%  Similarity=-0.042  Sum_probs=145.5

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|+++|++.+..+++...++.|..|+          ++|++..|+..+..+++..+|+.+...+....     .+||.
T Consensus       135 ~~~r~~~G~~~~~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~-----~gw~~  199 (465)
T TIGR00894       135 VFCRVIQGLAQGSVSPATHKIIVKWAPP----------KERSRLLGMSTSGFQLGTFIFLPISGWLCESW-----GGWPM  199 (465)
T ss_pred             HHHHHHHHHhcccchhhHHHHHHhcCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCCCe
Confidence            5689999999999999999999999984          58999999999989999999998887664321     26888


Q ss_pred             hHHHHHHHHHHHHHHHHHc-cC-Cccccccchhhhc-------hhh-hhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q 020441           82 LFIVFLGVITLGTILMCFL-RK-EEDKGEKETADAS-------VNF-YSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQ  151 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l-~~-~~~~~~~~~~~~~-------~~~-~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~  151 (326)
                      .|.+..+++++..++.+++ ++ |+++++++++|++       .++ +.+.+..   ..+.+++++........+...+.
T Consensus       200 ~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  276 (465)
T TIGR00894       200 IFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLP---IKAIPKSLPVWAIWFAIFGHFWL  276 (465)
T ss_pred             ehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCC---HHHHhcCHHHHHHHHHHHHHHHH
Confidence            8877665555444444333 32 2111111000000       000 0000001   22355666654443222211111


Q ss_pred             HHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhh---H----HHHHHHHHHHHHHHHHhc
Q 020441          152 QAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITF---I----VSGGAIAQVVVFLWILIN  222 (326)
Q Consensus       152 ~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~---i----~~~g~i~~~~~~~~~~l~  222 (326)
                      .... ..+.+.|..+.+|.+  ..++...+..++..+++++.|+++||.++|+.   .    +..+..............
T Consensus       277 ~~~~-~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (465)
T TIGR00894       277 YTIL-PTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALP  355 (465)
T ss_pred             HHHH-HHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111 122334544455543  67777788888899999999999997543210   0    111111111111111111


Q ss_pred             ccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          223 YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ...+.    .....+...+.+.+.+...........+..|+....+.++.+....+|..+++.+...+
T Consensus       356 ~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~  419 (465)
T TIGR00894       356 YLSAA----FYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNI  419 (465)
T ss_pred             HcCCc----hHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence            21221    12223333343444443333333344455565456677788999999988888777654

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.53  E-value=1.1e-12  Score=126.05  Aligned_cols=265  Identities=14%  Similarity=0.079  Sum_probs=143.8

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..+.....++.|..++          ++|++..|+......++..+|+.+...+..      .++||.
T Consensus       112 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~----------~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~~w~~  175 (496)
T PRK03893        112 FIARLVIGMGMAGEYGSSATYVIESWPK----------HLRNKASGFLISGFSIGAVVAAQVYSLVVP------VWGWRA  175 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cCCHHH
Confidence            5689999999999999988999999884          589999999988889999999888876643      357887


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHH-------HH-------------HHHhhc-------
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLS-------KS-------------ITTLLA-------  134 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------k~-------------~~~~~~-------  134 (326)
                      .|.+.....++..+....+|++++.+++++.+.   +..+..+..       ..             ......       
T Consensus       176 ~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (496)
T PRK03893        176 LFFIGILPIIFALWLRKNLPEAEDWKEKHAGKA---PVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVA  252 (496)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCchhhhhhccccc---cchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence            775422111111111112222111011000000   000000000       00             000000       


Q ss_pred             --------------------chhhHHHHHHHHHHHHHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhh
Q 020441          135 --------------------DVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAG  192 (326)
Q Consensus       135 --------------------~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G  192 (326)
                                          ++.............+...+....+.+.+.+...|.  .+.+......+++..+++++.|
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g  332 (496)
T PRK03893        253 VLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGG  332 (496)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                000000000000000000000011223344334444  4778888999999999999999


Q ss_pred             hhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhH
Q 020441          193 RLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQ  271 (326)
Q Consensus       193 ~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~  271 (326)
                      ++.||+++|+ ++..+..+.....++.. ...++.    .+...+..++.+.......+..++++.+.+|++ +..+++.
T Consensus       333 ~l~dr~g~~~-~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  406 (496)
T PRK03893        333 FLGDWLGTRK-AYVCSLLISQLLIIPVF-AIGGAN----VWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGF  406 (496)
T ss_pred             HHHHHhcchH-HHHHHHHHHHHHHHHHh-hccccH----HHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccch
Confidence            9999999885 55545443332222211 111111    122233333444444344566778889999976 5778888


Q ss_pred             HHHHHHHHHHHHHHHhhhhh
Q 020441          272 LKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       272 ~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +.....+|..+++.+...+.
T Consensus       407 ~~~~~~~g~~lgp~l~g~l~  426 (496)
T PRK03893        407 TYNVGALGGALAPILGALIA  426 (496)
T ss_pred             hhhhhhHHHHHHHHHHHHHh
Confidence            88888999999988887663

>TIGR01272 gluP glucose/galactose transporter

Probab=99.53  E-value=2.7e-12  Score=116.11  Aligned_cols=260  Identities=12%  Similarity=0.058  Sum_probs=163.4

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCC-CC------
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-GG------   74 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~-~~------   74 (326)
                      +.+-.+.|.|.+.+-++.+.|++++.+          ++++++..++..+++.+|.++|++++..+..... +.      
T Consensus        14 l~~~f~~g~G~~~lq~~~n~~v~~~~~----------~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~   83 (310)
T TIGR01272        14 LGALFVLASGLTILQVAANPYVSILGP----------IETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVAT   83 (310)
T ss_pred             HHHHHHHHhhHHHHHhhHHHHHHHHCC----------cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhh
Confidence            457789999999999999999999988          4578899999999999999999999987664321 10      


Q ss_pred             ---CCCCchhhHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhH-HHHHHHHHHHH
Q 020441           75 ---STSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRML-LIIPLFAYSGL  150 (326)
Q Consensus        75 ---~~~~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~l-ll~p~~~~~g~  150 (326)
                         ..++|+.+|.+...+..+..++..+.+.|+.++++++++.+ .+... +   +   +.+++|... ..+-.++|.|.
T Consensus        84 ~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~-~~~~~-~---~---~~~~~~~~~l~~~~~f~yvg~  155 (310)
T TIGR01272        84 ANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSS-GDTTQ-K---T---SAFQFTHLVLGALGIFVYVGA  155 (310)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccccccccc-ccccc-h---h---hHHhhHHHHHHHHHHHHHHHH
Confidence               11468888876544444444444455544332221111000 00000 0   1   133344333 34556788887


Q ss_pred             HHHHHHhhcccccccc--cccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCC
Q 020441          151 QQAFVWAEFTKEIVTP--ALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVT  226 (326)
Q Consensus       151 ~~~f~~~~~~~~~~~~--~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~  226 (326)
                      +.+... .+ ..|..+  ..|.  ++.+.....+..+.++|+.+.+++.||+++++ ++..+.++.....++ .... +.
T Consensus       156 e~~~~~-w~-~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~-~l~~~~~l~~~~~~l-~~~~-~~  230 (310)
T TIGR01272       156 EVSAGS-FL-VNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR-YLAFNAFLAVLLSIG-AALT-HG  230 (310)
T ss_pred             HHHHHH-HH-HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHH-HHHc-CC
Confidence            766542 11 123322  2343  46777788899999999999999999999875 555554444433222 1111 22


Q ss_pred             CCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          227 SGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       227 ~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                            .......++.|++.+...+...+...+.+|++...+-+.. ....+|+++.+.+-..+.
T Consensus       231 ------~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~la  288 (310)
T TIGR01272       231 ------YVAMWFVLALGLFNSIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLA  288 (310)
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHH
Confidence                  1223345578999999999999999888887654454554 345578888887655553

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.53  E-value=1e-11  Score=116.87  Aligned_cols=259  Identities=12%  Similarity=0.077  Sum_probs=145.6

Q ss_pred             CchhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCch
Q 020441            1 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTT   80 (326)
Q Consensus         1 li~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~   80 (326)
                      ++.+|+++|++.+...+....++.|.-+          ++++++..+++.....++..+|..++..+..      ..+||
T Consensus       107 l~~~r~l~Gi~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~------~~gw~  170 (413)
T PRK15403        107 FLIARFIQGTSICFIATVGYVTVQEAFG----------QTKGIKLMAIITSIVLVAPIIGPLSGAALMH------FVHWK  170 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hcCHH
Confidence            3578999999988665554455555545          3578899999999999999999988876643      24799


Q ss_pred             hhHHHHHHHHHHHHHHH-HHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhc
Q 020441           81 LLFIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEF  159 (326)
Q Consensus        81 ~~f~~~~~i~~l~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~  159 (326)
                      ..|.+..++.+++.+.. +++|+.++++++  + .      +.++..++..++++||+............... +.+..+
T Consensus       171 ~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~--~-~------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~-~~~~~~  240 (413)
T PRK15403        171 VLFAIIAVMGLIAFVGLLLAMPETVKRGAV--P-F------SAKSVLRDFRNVFRNRLFLTGAATLSLSYIPM-MSWVAV  240 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCccccCC--C-C------ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHh
Confidence            88887766666655443 335543221110  0 0      11122334455778988776443322222111 111122


Q ss_pred             ccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhc--ccCCCCCcchHHH
Q 020441          160 TKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILIN--YSVTSGVLGTLYP  235 (326)
Q Consensus       160 ~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~--~~~~~~~~~~~~~  235 (326)
                      .+.+..+..|.+  ..++.......+..+++.+.+++.++..+++ ....+..+...........  ..++.    +...
T Consensus       241 ~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~~~~ig~~l~~~~~~~~~~~----~~~~  315 (413)
T PRK15403        241 SPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPR-FIWRAVPIQLVGLALLIVGNLLWPHV----WLWS  315 (413)
T ss_pred             ChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh-HHHHHHHHHHHHHHHHHHHHHHcccc----HHHH
Confidence            333444444443  5677666667777788888888765444432 2211211111111111110  12221    1224


Q ss_pred             HHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          236 LIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       236 ~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ++..++.+++.+...+...+..-.-.++++..+.|.++..+..+...+.....++
T Consensus       316 ~~~~~l~~~G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~  370 (413)
T PRK15403        316 VLGTSLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWL  370 (413)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566677888777776666432111222345677788888888888877777665

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.53  E-value=1.4e-12  Score=122.59  Aligned_cols=271  Identities=13%  Similarity=0.017  Sum_probs=147.9

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.|..+++...++.|..|+          ++||+..|++.....+|..+|+.++..+.......+..+||.
T Consensus       100 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~----------~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~  169 (412)
T TIGR02332       100 YLLRILVGIAEAGFLPGILLYLTFWFPA----------YFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQW  169 (412)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHcCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhH
Confidence            5789999999999999888889998884          589999999999889999999999876653211112458999


Q ss_pred             hHHHHHHHHHHHHH-HHHHccCCccccc---cchhhh-------ch-----hhh--hHHHHHHHHHHHhhcchhhHHHHH
Q 020441           82 LFIVFLGVITLGTI-LMCFLRKEEDKGE---KETADA-------SV-----NFY--SYLVSLSKSITTLLADVRMLLIIP  143 (326)
Q Consensus        82 ~f~~~~~i~~l~~~-l~~~l~~~~~~~~---~~~~~~-------~~-----~~~--~~~~~~~k~~~~~~~~~~~lll~p  143 (326)
                      .|.+..+.+++..+ ..+++|+++++.+   +++.+.       +.     ++.  ...+..-++.++.+++++..+...
T Consensus       170 ~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (412)
T TIGR02332       170 LFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIFTPAIMLYTL  249 (412)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhcChHHHHHHH
Confidence            88876555544433 3345654432210   100000       00     000  000000012233334555433332


Q ss_pred             HHHHHHHHHHHHHhhcccccccc-cccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHH
Q 020441          144 LFAYSGLQQAFVWAEFTKEIVTP-ALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL  220 (326)
Q Consensus       144 ~~~~~g~~~~f~~~~~~~~~~~~-~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~  220 (326)
                      ..+.......-. ..+.+.+..+ ..|.  ...+......+++..++.++.|+++||+++|+.......++....+.+  
T Consensus       250 ~~~~~~~~~~~~-~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~--  326 (412)
T TIGR02332       250 AYFCLTNTLSAI-NIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLL--  326 (412)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHH--
Confidence            222111111111 1222223333 1233  356777788889999999999999999987643333333232222211  


Q ss_pred             hcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          221 INYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       221 l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ....++     +........+.+++.....+.......+.+|.+ +..+++..+....+|.++++.+...+
T Consensus       327 ~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i  392 (412)
T TIGR02332       327 ASATDH-----NLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGIL  392 (412)
T ss_pred             HHhcCC-----HHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence            111222     122222222223322222222233334567765 56689999999999999988776544

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.52  E-value=2.4e-12  Score=128.13  Aligned_cols=109  Identities=12%  Similarity=0.070  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhh
Q 020441          174 GGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQL  253 (326)
Q Consensus       174 ~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~  253 (326)
                      ....++.+++.+++.++.|.+.||+|||+ ++.++.++.+++.++  +.+.++.     ...++..+++|++.+...+..
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~-~l~~~~~lsai~~ll--~~~~~s~-----~~ll~~~~l~g~~~~~~~~~~  669 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLR-MLAGSMVLSCISCFF--LSFGNSE-----SAMIALLCLFGGLSIAAWNAL  669 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHH--HHHHccH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            34466778889999999999999999995 666666655544322  1223331     334444566777777777889


Q ss_pred             HhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          254 SALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       254 ~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ++++++++|++ |..+++..+....+|+.+++.+.+.+
T Consensus       670 ~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L  707 (742)
T TIGR01299       670 DVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSF  707 (742)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999987 67799999999999999999988655

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.52  E-value=2e-12  Score=123.22  Aligned_cols=262  Identities=11%  Similarity=0.019  Sum_probs=151.6

Q ss_pred             hHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhhH
Q 020441            4 ASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLF   83 (326)
Q Consensus         4 a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~f   83 (326)
                      .|+++|++.|..+.....++.+.-+           ++|++..|+......++..+|+.+.-.+..      ..+||..|
T Consensus       114 ~~~l~G~~~~~~~~~~~~~~~~~~~-----------~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~------~~gwr~~f  176 (455)
T TIGR00892       114 AGFITGLGLAFNFQPSLTMLGKYFY-----------RRRPLANGLAMAGSPVFLSTLAPLNQYLFE------SFGWRGSF  176 (455)
T ss_pred             HHHHHHhcchhhhhHHHHHHHHHHH-----------hhHHHHHHHHHhcccHHHHHHHHHHHHHHH------HhChHHHH
Confidence            4688899988776554444444443           478999999988888888888777655533      24699888


Q ss_pred             HHHHHHHHHHHHHHHHccCCccc----ccc--chhhh--chhh--hhHHHHHHHHH--HHhhcchhhHHHHHHHHHHHHH
Q 020441           84 IVFLGVITLGTILMCFLRKEEDK----GEK--ETADA--SVNF--YSYLVSLSKSI--TTLLADVRMLLIIPLFAYSGLQ  151 (326)
Q Consensus        84 ~~~~~i~~l~~~l~~~l~~~~~~----~~~--~~~~~--~~~~--~~~~~~~~k~~--~~~~~~~~~lll~p~~~~~g~~  151 (326)
                      .+..++.++..+..++++++..+    +++  ++.+.  ..++  .....++.++.  ++++++|+........+..+..
T Consensus       177 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  256 (455)
T TIGR00892       177 LILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLG  256 (455)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHH
Confidence            87766665555444444432111    000  00000  0000  00111111111  3567787765544322222211


Q ss_pred             HHHHHhhcccccccc-cccchhhHHHHHHHHHHHHHHHhhhhhhccCC--CChhh-HHHHHHHHHHHHHHHHHhcccCCC
Q 020441          152 QAFVWAEFTKEIVTP-ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGL--PSITF-IVSGGAIAQVVVFLWILINYSVTS  227 (326)
Q Consensus       152 ~~f~~~~~~~~~~~~-~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~--g~~~~-i~~~g~i~~~~~~~~~~l~~~~~~  227 (326)
                      .......++ .+..+ ..+....+....+.+++..+++++.|++.||.  ++++. .+..+.+......++  ....++ 
T Consensus       257 ~~~~~~~l~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll--~~~~~~-  332 (455)
T TIGR00892       257 FFAPIIFLV-PYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLL--CALAGD-  332 (455)
T ss_pred             ccchHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHH--HHHhch-
Confidence            100111111 22222 22234778888899999999999999999973  22311 222222222222111  122232 


Q ss_pred             CCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          228 GVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       228 ~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                          ++..++..+++|++.+...+..++++.+.+|++ +..+++.++..+++|..+++.+...+
T Consensus       333 ----~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l  392 (455)
T TIGR00892       333 ----YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRL  392 (455)
T ss_pred             ----HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeee
Confidence                245566788889999998899999999999876 47789999999999999999888655

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.51  E-value=1.3e-12  Score=125.13  Aligned_cols=289  Identities=13%  Similarity=0.088  Sum_probs=148.0

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhc---CCCCCCCCC
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK---DDKGGSTSG   78 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~---~~~~~~~~~   78 (326)
                      +.+|+++|++.+.... ...++++..+          +++||+..|+..+..+.+..+|+.+...+..   .....+..+
T Consensus       128 ~~~r~l~G~~~~~~~~-~~~~i~~~~~----------~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~g  196 (476)
T PLN00028        128 IAVRFFIGFSLATFVS-CQYWMSTMFN----------GKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTA  196 (476)
T ss_pred             HHHHHHHHHHHHhhHH-HHHHHHHhcC----------hhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhh
Confidence            4678999999886443 3345677776          3589999999887777888877766644322   110011247


Q ss_pred             chhhHHHHHHHHHHHHHHHHHccCCccccc-cchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHH-HHHHHHHHHH
Q 020441           79 TTLLFIVFLGVITLGTILMCFLRKEEDKGE-KETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFA-YSGLQQAFVW  156 (326)
Q Consensus        79 ~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~-~~g~~~~f~~  156 (326)
                      ||..|.+..+++++..++.+++++..++.+ ++..++...++.+..+.   ..+.+++++..++...+. ..+....+. 
T Consensus       197 Wr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  272 (476)
T PLN00028        197 WRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKV---LRYGVTNYRTWILALTYGYSFGVELTMD-  272 (476)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHH---HHHHHcCchhHHHHHHHHHHHHHHHHHH-
Confidence            999888776666555555444442211111 01000000011122222   223566777544332221 111111111 


Q ss_pred             hhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChh----h--HHHHHHHHHHHHHHHHHhcccCCCC
Q 020441          157 AEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSIT----F--IVSGGAIAQVVVFLWILINYSVTSG  228 (326)
Q Consensus       157 ~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~----~--i~~~g~i~~~~~~~~~~l~~~~~~~  228 (326)
                      +.. +.+..+..|.  ...+....+.+++..++.++.|+++||++||.    +  +......+.....+  .+...++  
T Consensus       273 ~~~-p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~--~~~~~~~--  347 (476)
T PLN00028        273 NII-AEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCI--WLGRANS--  347 (476)
T ss_pred             hHH-HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHH--Hhcccch--
Confidence            111 1233333444  46778888899999999999999999987541    1  11111111111111  1222222  


Q ss_pred             CcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHH
Q 020441          229 VLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI---SLQAMLIVMVVGICV  305 (326)
Q Consensus       229 ~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~---~~~~~~~~~~~~~~~  305 (326)
                         .....+..++++++.+..++..+++..+..|+++..+.+..+....+|+.++..+-..-   ......++..+++++
T Consensus       348 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i  424 (476)
T PLN00028        348 ---LGAAIVVMILFSIFVQAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIA  424 (476)
T ss_pred             ---HHHHHHHHHHHHHHHHHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHH
Confidence               12233334445555444444455555566666566677766666666666665543210   122223344445556


Q ss_pred             HHHHHHHH
Q 020441          306 ALVGILFL  313 (326)
Q Consensus       306 ~~~~~~~~  313 (326)
                      +.++.+.+
T Consensus       425 ~~~~~~~~  432 (476)
T PLN00028        425 CTLPVAFI  432 (476)
T ss_pred             HHHHHHhe
Confidence            66665555

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.51  E-value=7.4e-12  Score=116.82  Aligned_cols=255  Identities=16%  Similarity=0.068  Sum_probs=142.7

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|+++|++.+...+....+..+..+          ++++++..++.......+..+|+.++..+..      ..+||.
T Consensus       100 ~~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~------~~g~~~  163 (394)
T PRK11652        100 IAASAIQGLGTGVGGVMARTLPRDLYE----------GTQLRHANSLLNMGILVSPLLAPLIGGLLTT------LFGWRA  163 (394)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccChHH
Confidence            467899999988776655445444444          3478888887777777778888877765532      246888


Q ss_pred             hHHHHHHHHHHHHHH-HHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcc
Q 020441           82 LFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFT  160 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~  160 (326)
                      .|.+..++..+..++ .+++|+++++++ +        +.+.++..   .+.+++|+........+........+... .
T Consensus       164 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  230 (394)
T PRK11652        164 CYLFLLLLGAGVTFSMARWMPETRPADA-R--------RTRVLASY---RTLLSNRRFNCYLLMLIGTLAGIAVFEAC-S  230 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCcccc-c--------hhHHHHHH---HHHHcChHHHHHHHHHHHHHHHHHHHHHh-C
Confidence            776654444333332 334443222111 1        00112222   22455665432221111111111111111 1


Q ss_pred             cccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHH-HHHHHHHHHHHHHHhcccCCCCCcchHHHHH
Q 020441          161 KEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVS-GGAIAQVVVFLWILINYSVTSGVLGTLYPLI  237 (326)
Q Consensus       161 ~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~-~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (326)
                      +.+.++.+|.+  ..++......++..+++++.+++.||.+++. ... .......... +.........    .+....
T Consensus       231 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~  304 (394)
T PRK11652        231 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM-WQSVICCLLAGLLM-WIPGWFGVMN----VWTLLV  304 (394)
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHhcccc----HHHHHH
Confidence            12333334433  5677777778888889999999999877332 211 1111111111 1110111111    234555


Q ss_pred             HHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          238 MAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       238 ~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      ..+++|++.+..++...+...+.+|+++..+.+..+..+.+|.+++..+...+.
T Consensus       305 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        305 PAALFFFGAGMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            667888888888888888888888877766778888888999998888876654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.51  E-value=4.6e-13  Score=123.23  Aligned_cols=266  Identities=13%  Similarity=0.054  Sum_probs=149.6

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHH-HHHHHHhcCCCCCCCCCch
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGN-LITLAVLKDDKGGSTSGTT   80 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~-li~~~~~~~~~~~~~~~~~   80 (326)
                      +..|+++|++.+..++...+++.|..+          +++|++..|+.....+.+..+|+ ++...+..      ..+||
T Consensus        87 ~~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~  150 (379)
T TIGR00881        87 AALWALNGIFQGMGWPPCGRTVTKWFS----------RSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE------LYSWH  150 (379)
T ss_pred             HHHHHHHHhhccccCCchHHHHHHhcC----------HhhheeeEeehhccchhHHHHHHHHHHHHHHh------cCCch
Confidence            467999999999999999999999888          45899999998888889998888 45544432      24688


Q ss_pred             hhHHHHHHHHHHHHHHH-HHccCCcccc---cc-----chhhh---ch-hhhhHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 020441           81 LLFIVFLGVITLGTILM-CFLRKEEDKG---EK-----ETADA---SV-NFYSYLVSLSKSITTLLADVRMLLIIPLFAY  147 (326)
Q Consensus        81 ~~f~~~~~i~~l~~~l~-~~l~~~~~~~---~~-----~~~~~---~~-~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~  147 (326)
                      ..|.+..++.++..++. +++|++++++   ++     ++.++   +. ++..+.++   ...+.+++|+...+....+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  227 (379)
T TIGR00881       151 WVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQI---FLQYVLLNKVLWYISLGYVF  227 (379)
T ss_pred             hHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHH---HHHHHHhcchHHHHHHHHHH
Confidence            77766554444443333 3344322111   00     00000   00 00011111   12234566665443322221


Q ss_pred             HHHHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCC-ChhhHHHHHHHHHHHHHHHHHhccc
Q 020441          148 SGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLP-SITFIVSGGAIAQVVVFLWILINYS  224 (326)
Q Consensus       148 ~g~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g-~~~~i~~~g~i~~~~~~~~~~l~~~  224 (326)
                      ........ ..+.+.+..+..|.  .+.+....+.+++..++.++.|++.||.. +++..+..............+ ...
T Consensus       228 ~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~  305 (379)
T TIGR00881       228 VYVVRTGI-LDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVY-WLN  305 (379)
T ss_pred             HHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH-hcC
Confidence            11111111 11122233334444  36778888899999999999999999753 332122111111111111111 111


Q ss_pred             CCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          225 VTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       225 ~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +..+   .....+..++.|+......+....+..+.+|++ +..+.+.++....+|..+++.+...+.
T Consensus       306 ~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  370 (379)
T TIGR00881       306 PAAN---PLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLA  370 (379)
T ss_pred             cchh---HHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence            2211   233444556667655555566677888999876 577889999999999998888776553

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.51  E-value=3.8e-12  Score=120.67  Aligned_cols=265  Identities=9%  Similarity=-0.032  Sum_probs=141.6

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      ...|++.|++.|..|.....++.|..|          +++||+.+|+.....+.+..+|+.+.......     ..+||.
T Consensus       122 ~~~~~l~g~~~g~~~~~~~~~i~~~~~----------~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~-----~~~w~~  186 (438)
T TIGR00712       122 FVLLFLNGWFQGMGWPPCGRTMVHWWS----------QSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW-----FNDWHA  186 (438)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHhcC----------cccchhHHHHHHHHHHhHhHHHHHHHHHHHHH-----hhhhHH
Confidence            356888999999999877778888777          46899999999888888888887765443221     136888


Q ss_pred             hHHHHHHHHHHHH-HHHHHccCCcccc---ccchhh--------hchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 020441           82 LFIVFLGVITLGT-ILMCFLRKEEDKG---EKETAD--------ASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSG  149 (326)
Q Consensus        82 ~f~~~~~i~~l~~-~l~~~l~~~~~~~---~~~~~~--------~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g  149 (326)
                      .|.+..++.++.. +..+++|+++++.   +.++.+        ++.+++.+.++.+++  +.++|++............
T Consensus       187 ~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  264 (438)
T TIGR00712       187 ALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQ--YVLPNKLLWYIAIANVFVY  264 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHH--HHccCchHHHHHHHHHHHH
Confidence            8877665555544 3345555432211   000000        000011112222221  3567776654432221111


Q ss_pred             -HHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHH--HHHHHHHhccc
Q 020441          150 -LQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQV--VVFLWILINYS  224 (326)
Q Consensus       150 -~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~--~~~~~~~l~~~  224 (326)
                       ...++  ..+.+.+.++..|.  ...+.....+++...++.++.|++.||+++++... .+.....  ...+..+. ..
T Consensus       265 ~~~~~~--~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~~~~~~~-~~  340 (438)
T TIGR00712       265 LLRYGV--LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGA-TGVFFMTLVTIAVIVYW-MN  340 (438)
T ss_pred             HHHHHH--HHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccH-HHHHHHHHHHHHHHHHH-hc
Confidence             11111  12223344444444  35677788888899999999999999985432122 2221111  11111111 11


Q ss_pred             CCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHH-HHHHHHHhhhh
Q 020441          225 VTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCAS-IAVVFFIGPYI  290 (326)
Q Consensus       225 ~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g-~~i~~~i~~~~  290 (326)
                      +...   .+......+.+|++-............+.+|++ +..+.+.++....+| .++++.+.+.+
T Consensus       341 ~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l  405 (438)
T TIGR00712       341 PAGN---PLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT  405 (438)
T ss_pred             CCCc---hHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHH
Confidence            2111   122223333444432222223335567888865 567888777776665 45666665544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.50  E-value=1.7e-11  Score=115.89  Aligned_cols=260  Identities=15%  Similarity=0.090  Sum_probs=141.3

Q ss_pred             HhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhc-CCCCCCCCCchhhHH
Q 020441            6 LYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK-DDKGGSTSGTTLLFI   84 (326)
Q Consensus         6 ~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~-~~~~~~~~~~~~~f~   84 (326)
                      ++.|++.+...+...++..|..++         +++|++..++.......|..+++.+...+.. ..++.+..+||..+.
T Consensus       107 ~~~~~~~~~~~~~~~al~~~~~~~---------~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~  177 (437)
T TIGR00792       107 ILLGLFYSFVNIPYWSLVPAITLD---------PRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFAL  177 (437)
T ss_pred             HHHHHHHHhhcccHhhCcccccCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHH
Confidence            344444444444444444444432         3578888887766666666555554332221 111123467998777


Q ss_pred             HHHHHHHHHHHHH-HHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 020441           85 VFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEI  163 (326)
Q Consensus        85 ~~~~i~~l~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~  163 (326)
                      +..+++.+..++. +++|+++++++++  +   +++.+.++.+|+   +++||+...+....+........... +..-+
T Consensus       178 i~~~l~~~~~~~~~~~~~e~~~~~~~~--~---~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  248 (437)
T TIGR00792       178 VLALIGVVSLIICFFGTKERYSEIPKN--I---EKKLSLKQIFKA---LFKNDQLLILCLAYLFYNLAFNIKNG-VQVYY  248 (437)
T ss_pred             HHHHHHHHHHHHHHcCCEecCCCCCcc--c---ccCCCHHHHHHH---HhCCHHHHHHHHHHHHHHHHHHHHcc-hhhee
Confidence            6655554444333 2333322111111  0   112234444443   45677765443222222221111111 11112


Q ss_pred             ccccccc-hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHH
Q 020441          164 VTPALGV-SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALL  242 (326)
Q Consensus       164 ~~~~lg~-~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~  242 (326)
                      .+..++. ...+....+..++..++.++.|++.||+|+|+ ++..+.++.....+...  +.+++    .+..++..++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~-~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~  321 (437)
T TIGR00792       249 FTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI-LFAGGILLMVLGYLIFF--FAGSN----LPLILVLIILA  321 (437)
T ss_pred             EeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHH--Hcchh----HHHHHHHHHHH
Confidence            2223332 24455666778889999999999999999885 66666655554433222  12221    24445666778


Q ss_pred             hhhhHHhhhhhHhhHHhhcc-------CC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          243 GIGDGVLNTQLSALLGILFK-------HD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       243 G~~d~~~~~~~~~il~~~f~-------~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      |++.+..++..++++++..|       ++ +..+++.+++.+.+|.+++..+...+
T Consensus       322 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l  377 (437)
T TIGR00792       322 GFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI  377 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89998888888888888754       22 24467788888888888887776544

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.50  E-value=1.4e-12  Score=118.48  Aligned_cols=231  Identities=17%  Similarity=0.206  Sum_probs=160.9

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..++....++.|..|          +++|++..++.....+.+..+|+.++..+...      .+||.
T Consensus        91 ~~~~~l~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~~~  154 (352)
T cd06174          91 LVGRFLLGLGGGALYPAAAALIAEWFP----------PKERGRALGLFSAGFGLGALLGPLLGGLLAES------LGWRW  154 (352)
T ss_pred             HHHHHHHHcccccccHhHHHHHHHhCC----------ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH------hhHHH
Confidence            467999999999999999999999998          46899999999999999999999998877543      24777


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHHHHHHhhcc
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIP-LFAYSGLQQAFVWAEFT  160 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p-~~~~~g~~~~f~~~~~~  160 (326)
                      .|.+...+.+++.++..+++                                  |+...... .++.......+.  .+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~--~~~  198 (352)
T cd06174         155 LFLILAILGLLLALLLLFLL----------------------------------RLLLLLALAFFLLSFGYYGLL--TYL  198 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHHHHHHhHHHHHH--HHH
Confidence            77766655665555554443                                  11111111 111111111111  111


Q ss_pred             ccccccccc--chhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHH
Q 020441          161 KEIVTPALG--VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM  238 (326)
Q Consensus       161 ~~~~~~~lg--~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (326)
                      +.+..+..|  ..+.+......+++..++.++.|++.||++||+..+..+..+.....+..  ...++     ++..++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~-----~~~~~~~  271 (352)
T cd06174         199 PLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLL--ALAPS-----LALLLVA  271 (352)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--HHhcc-----HHHHHHH
Confidence            122222223  34678888999999999999999999999988414555555544443321  12222     2556777


Q ss_pred             HHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          239 AALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       239 ~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      .++.|++.+..++...+...+..|++ +...++.++..+.+|..++..+...+.
T Consensus       272 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~  325 (352)
T cd06174         272 LLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL  325 (352)
T ss_pred             HHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88999999999999999999999965 577899999999999999999987664

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.50  E-value=1.5e-11  Score=113.88  Aligned_cols=249  Identities=12%  Similarity=0.112  Sum_probs=134.6

Q ss_pred             CchhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCch
Q 020441            1 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTT   80 (326)
Q Consensus         1 li~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~   80 (326)
                      ++.+|+++|++.+..+ ...+.+.|..|          +++|++..++......+|..+|++++..+..      ..+||
T Consensus        82 l~~~R~l~G~g~~~~~-~~~~~~~~~~~----------~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~------~~gWr  144 (368)
T TIGR00903        82 LLACQLLAALGQPFLL-NAFAPAASQIR----------EERRDLVISLLSFAMYLGIIFALAAGLKIYT------AGGLQ  144 (368)
T ss_pred             HHHHHHHHHhHhHHHH-HHHHHHHHHcC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------ccchH
Confidence            3578999999999755 44445577777          4689999999999999999999988877753      35799


Q ss_pred             hhHHHHHHHHHHHHHH-HHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHH-HHHHHHHHHhh
Q 020441           81 LLFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAY-SGLQQAFVWAE  158 (326)
Q Consensus        81 ~~f~~~~~i~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~-~g~~~~f~~~~  158 (326)
                      ..|.+..+++.+..++ .+++|++++++++.   .+  .+    +..++..++++||+...+....+. .....++  ..
T Consensus       145 ~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~---~~--~~----~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~--~~  213 (368)
T TIGR00903       145 LLIIPIAAVAAAGIILVLAALPALPFQAAEG---FG--FK----DAVKEFGALAGRKDLWIIGAILGFGVALFDNL--AI  213 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC---cc--hH----HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH--HH
Confidence            8887665555554443 34555432221110   00  00    111234456778777554322221 1111111  11


Q ss_pred             cccccccccccch-hhHHHHHHHHHHHHHHHhhhhhhccCC---CChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHH
Q 020441          159 FTKEIVTPALGVS-GVGGAMAVYGAFDAICSLAAGRLTTGL---PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLY  234 (326)
Q Consensus       159 ~~~~~~~~~lg~~-~~~~~~~~~gi~~~i~~~~~G~l~d~~---g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~  234 (326)
                      +.+.+..+ .|.+ ..+....+..+...++.   +.+.||.   ++|+........+......  .+....+.     ..
T Consensus       214 wlp~~L~~-~g~s~~~~~~~~l~~~~g~~g~---~~~~d~~~r~~~r~~~~~~~~~~~a~~~~--~~~~~~~~-----~~  282 (368)
T TIGR00903       214 WLEAALRP-AGLEDIAGDAVALAILAGLIGV---AVIPDRVARAGLRSIYIRAAALLIAAFFL--ALAFELNR-----LA  282 (368)
T ss_pred             HHHHHHHH-CCCChHHHHHHHHHHHHHHHHH---HHhhHHhhhhhhHHHHHHHHHHHHHHHHH--HHHHcccc-----HH
Confidence            22233322 2332 23333444444444443   5555554   3332122212222222111  11222221     23


Q ss_pred             HHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhh
Q 020441          235 PLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       235 ~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~  288 (326)
                      ......+.+++.....+..+++..|.+|++ +.++.+..+....+|+.+++..-+
T Consensus       283 ~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~  337 (368)
T TIGR00903       283 LFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAM  337 (368)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHH
Confidence            333444455555555566778999999986 577888888877777766555554

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10054 putative transporter; Provisional

Probab=99.50  E-value=3.8e-12  Score=119.06  Aligned_cols=252  Identities=13%  Similarity=0.087  Sum_probs=149.0

Q ss_pred             hhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhh
Q 020441            3 PASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLL   82 (326)
Q Consensus         3 ~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~   82 (326)
                      ..+.+.|.+.+..+....++..|..+          +++|++..|+.....+++..+|+.++..+..       .+|+..
T Consensus       101 ~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-------~g~~~~  163 (395)
T PRK10054        101 LFFALINCAYSVFSTVLKAWFADNLS----------STSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-------QSINLP  163 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccCcH
Confidence            34566676666666655566666655          4589999999999999999999999876642       247777


Q ss_pred             HHHHHHHHHHHHHHH-HHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH-H--HHhh
Q 020441           83 FIVFLGVITLGTILM-CFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQA-F--VWAE  158 (326)
Q Consensus        83 f~~~~~i~~l~~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~-f--~~~~  158 (326)
                      |.+..++.+++.++. +++++++++++++  +     +.. +    +..+.++||+.+......+...+..+ +  +...
T Consensus       164 f~~~~~~~~i~~i~~~~~~~~~~~~~~~~--~-----~~~-~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  231 (395)
T PRK10054        164 FWLAAICSAFPLVFIQIWVQRSEKAIATE--T-----GSV-W----SPSVLLQDKALLWFTCSGFLASFVSGAFASCISQ  231 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccccc--h-----hhh-h----hhhhhccCceehHHHHHHHHHHHHHHHhhhhHHH
Confidence            776655555554333 4454332221111  0     000 1    11235677776544322222111111 1  1122


Q ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHH
Q 020441          159 FTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM  238 (326)
Q Consensus       159 ~~~~~~~~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (326)
                      +.........+.+.++....++++......+..|++.||+++|+ .+..+.++....+... ....++     .+...+.
T Consensus       232 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~l~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~  304 (395)
T PRK10054        232 YVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRP-LMTAGTLCFVIGLVGF-IFSGNS-----LLLWGMS  304 (395)
T ss_pred             HHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchh-HHHHHHHHHHHHHHHH-HHcchH-----HHHHHHH
Confidence            21111111222335667777777777788888999999999885 6555655444433221 111122     2334556


Q ss_pred             HHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          239 AALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       239 ~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      .+++|++++...+..++.+.+..|++ +...++.++ ...+|.++++.+...+.
T Consensus       305 ~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~  357 (395)
T PRK10054        305 AAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVIL  357 (395)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHH
Confidence            77889999888888888998988876 455677555 44578888888877664

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.50  E-value=3.1e-12  Score=120.54  Aligned_cols=232  Identities=11%  Similarity=0.043  Sum_probs=133.0

Q ss_pred             chhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHccCCccccccc-hhhhchhhh
Q 020441           41 VIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKE-TADASVNFY  119 (326)
Q Consensus        41 ~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~-~~~~~~~~~  119 (326)
                      ++|+..|......++|..+|+.++..+..       .+|+.+|.+..++.++..++.+++++++++++++ ++++++.+ 
T Consensus       138 ~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  209 (420)
T PRK09528        138 RSGFEYGRARMWGSLGWALCAFIAGILFN-------INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANAS-  209 (420)
T ss_pred             hccccchhhHHhhhHHHHHHHHHHHHHHh-------cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccc-
Confidence            45667777777778899999888765532       2466677665545555554554544333222111 00111011 


Q ss_pred             hHHHHHHHHHHHhhcchhhHHHHHHHHHH-HHHHHH--HHhhc-ccccccccccchhhHHHHHHHHHHHHHHHhhhhhhc
Q 020441          120 SYLVSLSKSITTLLADVRMLLIIPLFAYS-GLQQAF--VWAEF-TKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLT  195 (326)
Q Consensus       120 ~~~~~~~k~~~~~~~~~~~lll~p~~~~~-g~~~~f--~~~~~-~~~~~~~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~  195 (326)
                         ++..++..+.++||+...+....+.. .....+  ....+ .+.+.....+....+.+..+.++.+.++.++.|++.
T Consensus       210 ---~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~  286 (420)
T PRK09528        210 ---AVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFII  286 (420)
T ss_pred             ---cccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               11233445577788764433211111 111111  01111 111111123334667888888899999999999999


Q ss_pred             cCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhh-HHH
Q 020441          196 TGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFA-QLK  273 (326)
Q Consensus       196 d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa-~~~  273 (326)
                      ||+++|+ .+..+.++......+  +.+.++     ++......++.|++.+.........+.+.+|++. ...++ .++
T Consensus       287 dr~g~~~-~~~~~~~l~~~~~~l--~~~~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  358 (420)
T PRK09528        287 NRIGAKN-ALLLAGTIMAVRIIG--SGFATG-----PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQ  358 (420)
T ss_pred             HHhCcch-hhHHHHHHHHHHHHH--HHhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHH
Confidence            9999986 555544443333222  223333     2445566778888888877777788888898764 44555 377


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 020441          274 VWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       274 ~~~~~g~~i~~~i~~~~~  291 (326)
                      ....+|..+++.+...+.
T Consensus       359 ~~~~lg~~ig~~~~G~l~  376 (420)
T PRK09528        359 FAKQLGAVFLSTLAGNLY  376 (420)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            778888888888776653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.49  E-value=8.9e-12  Score=117.54  Aligned_cols=232  Identities=12%  Similarity=0.082  Sum_probs=123.9

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHh-----c---CCC-
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL-----K---DDK-   72 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~-----~---~~~-   72 (326)
                      +..|++.|++ |..|.+....+++.-|          +++||+..|++.+.-++|..+++++...+.     .   ... 
T Consensus       132 li~r~l~Gig-g~~f~~~~~~vs~wfp----------~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~  200 (462)
T PRK15034        132 IVIALLCGFA-GANFASSMGNISFFFP----------KAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGV  200 (462)
T ss_pred             HHHHHHHHHH-HHhHHHHHHHHHHHCC----------HhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            5679999998 7788888778888777          358999999997666777776666554321     1   000 


Q ss_pred             ---CCCCCCchhhHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 020441           73 ---GGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSG  149 (326)
Q Consensus        73 ---~~~~~~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g  149 (326)
                         .++..+||..+.++..+.++..++.++..++++++           +.+.    ++..+.+|+|+.-++.  .+|..
T Consensus       201 ~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~-----------~~~~----~~~~~vlk~~~~Wlls--lly~~  263 (462)
T PRK15034        201 PQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS-----------RASI----ADQLPVLQRLHLWLLS--LLYLA  263 (462)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-----------ccCH----HHHHHHhCCCchhHHH--HHHHH
Confidence               11234577666666655555555555543221111           1112    2344477888765443  22222


Q ss_pred             HHHHHH-HhhcccccccccccchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCC
Q 020441          150 LQQAFV-WAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSG  228 (326)
Q Consensus       150 ~~~~f~-~~~~~~~~~~~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~  228 (326)
                      ...+|. .+.+.+.+..+..+.........+..+...+..|++|+++||+|+++ ++..+.+..+++....++..+++..
T Consensus       264 tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~-vl~~~~i~~~i~~~~~~l~lp~~~~  342 (462)
T PRK15034        264 TFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVR-VTLINFIFMAIFSALLFLTLPGTGS  342 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH-HHHHHHHHHHHHHHHHHHHhccccc
Confidence            222222 11111122222221112222344556778889999999999999985 6555554444332222222222210


Q ss_pred             CcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccC
Q 020441          229 VLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH  263 (326)
Q Consensus       229 ~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~  263 (326)
                       .......+..+.+.++.+.-|...+-++.+.||+
T Consensus       343 -~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~  376 (462)
T PRK15034        343 -GNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQ  376 (462)
T ss_pred             -cHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhh
Confidence             0112233333333455555566666677777774

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.48  E-value=1.2e-12  Score=120.66  Aligned_cols=261  Identities=11%  Similarity=0.065  Sum_probs=135.9

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcC----CCCCCCC
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD----DKGGSTS   77 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~----~~~~~~~   77 (326)
                      +.+|+++|++.+. +.....++++..+          +++|++..++.....+.+..+|+.++..+...    .++....
T Consensus        95 ~~~~~~~g~~~~~-~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~  163 (366)
T TIGR00886        95 LLLRLFIGIAGGS-FASCMPWISFFFP----------KKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHL  163 (366)
T ss_pred             HHHHHHHHHhchh-hHhHHHHHHHhcC----------HhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            4689999998654 5555667777777          45899999988877788888887776544321    1111223


Q ss_pred             CchhhH-HHHHHHHHHH-HHHHHHccCCccccccchh-hhchhhhhHHHHHHHHHHHhhcchhhHHHHHH-HHHHHHHHH
Q 020441           78 GTTLLF-IVFLGVITLG-TILMCFLRKEEDKGEKETA-DASVNFYSYLVSLSKSITTLLADVRMLLIIPL-FAYSGLQQA  153 (326)
Q Consensus        78 ~~~~~f-~~~~~i~~l~-~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~-~~~~g~~~~  153 (326)
                      +||..| +....+..+. .+...+.++..++++++++ +.+..+....++..++..+.+++|+...+... +...+....
T Consensus       164 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (366)
T TIGR00886       164 AWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLG  243 (366)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence            677666 3322222222 2233334332211111100 00000000011122244556777776543322 222222222


Q ss_pred             HHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 020441          154 FVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLG  231 (326)
Q Consensus       154 f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~  231 (326)
                      +. +.+ +.+.++..|.  .+.+....+.++...++.++.|++.||+++|+ .+..+............+...++.+   
T Consensus       244 ~~-~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---  317 (366)
T TIGR00886       244 VS-SIF-AMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR-KLLMSFLGVAMGAFLVVLGLVSPLS---  317 (366)
T ss_pred             HH-HHH-HHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch-hHHHHHHHHHHHHHHHHhcCCCcch---
Confidence            11 111 2244444454  36677778888889999999999999999874 4444443333322221122222101   


Q ss_pred             hHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHH
Q 020441          232 TLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCAS  279 (326)
Q Consensus       232 ~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g  279 (326)
                      ....++...+.++.-+..++..+.+..+.+|+++..+.+..+....+|
T Consensus       318 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       318 LAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCC
Confidence            233333334444445555556667777888876666777666655443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.48  E-value=1.4e-11  Score=115.15  Aligned_cols=218  Identities=13%  Similarity=0.053  Sum_probs=119.0

Q ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHH-HHHccCCccccccchhhhchhhhhH
Q 020441           43 GSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSY  121 (326)
Q Consensus        43 g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~f~~~~~i~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~  121 (326)
                      +.+.++..+..+++.++|+.++..+...      .|||..|.+...+.++..+. .+++|+..+++++++.     +.  
T Consensus       142 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~------~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--  208 (393)
T PRK15011        142 VMFSSFLRAQVSLAWVIGPPLAYALAMG------FSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATG-----TL--  208 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHh------cChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccc-----cc--
Confidence            4566777777788999998888776432      37998887665444444433 3345543222211100     00  


Q ss_pred             HHHHHHHHHHhhcchhh-HHHH-HHHHHHHHHHHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccC
Q 020441          122 LVSLSKSITTLLADVRM-LLII-PLFAYSGLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTG  197 (326)
Q Consensus       122 ~~~~~k~~~~~~~~~~~-lll~-p~~~~~g~~~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~  197 (326)
                        +.      ..++++. +... ......+....+  ..+.+.+.++.+|.+  +.+.......+...++.++.|++.||
T Consensus       209 --~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr  278 (393)
T PRK15011        209 --EA------PRRNRRDTLLLFVICTLMWGTNSLY--IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR  278 (393)
T ss_pred             --cc------cccccccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              00      0112221 1111 011111211111  112223444444543  56666666667778889999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHH
Q 020441          198 LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQC  277 (326)
Q Consensus       198 ~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~  277 (326)
                      ++||+ .+..+.+.....+..  +...++     +....+..++.+++.+...+..+....+.+|+++..+.+.++....
T Consensus       279 ~g~~~-~~~~~~~~~~~~~~~--~~~~~~-----~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~  350 (393)
T PRK15011        279 LGKRF-LMRVAAVAGVCFYAG--MLMAHS-----PAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATTLYTNTSR  350 (393)
T ss_pred             hChHH-HHHHHHHHHHHHHHH--HHHHhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH
Confidence            99885 555454433322221  112222     2333333444445545444555666788899877778888888888


Q ss_pred             HHHHHHHHHhhhhh
Q 020441          278 ASIAVVFFIGPYIS  291 (326)
Q Consensus       278 ~g~~i~~~i~~~~~  291 (326)
                      +|..++..+...+.
T Consensus       351 lg~~~g~~l~G~i~  364 (393)
T PRK15011        351 VGWIIAGSLAGIVA  364 (393)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888887664

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.48  E-value=8.6e-12  Score=117.43  Aligned_cols=274  Identities=16%  Similarity=0.066  Sum_probs=144.9

Q ss_pred             CchhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCch
Q 020441            1 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTT   80 (326)
Q Consensus         1 li~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~   80 (326)
                      ++.+|++.|+..|+.-..+.-|++|++|+          +.||......    +++..+|.+++..+..+.--+++..|.
T Consensus       119 li~GR~i~Gl~~gl~~~~~pmyl~E~sP~----------~~RG~~g~~~----~~~~~~g~ll~~~~~l~~ilGt~~~W~  184 (485)
T KOG0569|consen  119 LILGRLIVGLACGLSTGLVPMYLTEISPK----------NLRGALGTLL----QIGVVIGILLGQVLGLPSLLGTEDLWP  184 (485)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhhcChh----------hhccHHHHHH----HHHHHHHHHHHHHHccHHhcCCCcchH
Confidence            46899999999999999999999999995          5898644433    555555555554332221112344687


Q ss_pred             hhHHHHHHHHHHHHHHHHHccCCcc------ccccch----------h--hhchhhhhH-HHH------HHHHHHHhhcc
Q 020441           81 LLFIVFLGVITLGTILMCFLRKEED------KGEKET----------A--DASVNFYSY-LVS------LSKSITTLLAD  135 (326)
Q Consensus        81 ~~f~~~~~i~~l~~~l~~~l~~~~~------~~~~~~----------~--~~~~~~~~~-~~~------~~k~~~~~~~~  135 (326)
                      ..+..-.+.+.+...+..++|+.++      .++++.          +  +++.++... .++      .--+..++++|
T Consensus       185 ~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~  264 (485)
T KOG0569|consen  185 YLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKN  264 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcC
Confidence            6665555555555566667765432      010000          0  000000000 000      00124456666


Q ss_pred             hhhHHHHHHHHHHHHHHHHHH----hhcccc-cccccccchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHH
Q 020441          136 VRMLLIIPLFAYSGLQQAFVW----AEFTKE-IVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAI  210 (326)
Q Consensus       136 ~~~lll~p~~~~~g~~~~f~~----~~~~~~-~~~~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i  210 (326)
                      ++...-....+.....+-|-.    ..|... +.+-.+..+..-++....|+...+...+...+.||.||| ++++.+..
T Consensus       265 ~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR-pLll~~~~  343 (485)
T KOG0569|consen  265 PTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR-PLLLISLS  343 (485)
T ss_pred             cchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-HHHHHHHH
Confidence            554432222222211111110    111111 111122234567888888999999999999999999999 57776665


Q ss_pred             HHHHHHHHHH--hcccCCC-CCcchHHHHHHHHHHhhhhHHhh-hhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHH
Q 020441          211 AQVVVFLWIL--INYSVTS-GVLGTLYPLIMAALLGIGDGVLN-TQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFF  285 (326)
Q Consensus       211 ~~~~~~~~~~--l~~~~~~-~~~~~~~~~~~~~l~G~~d~~~~-~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~  285 (326)
                      +...+.+++.  +...... +|.. +..++..+++.+..++-- +..+-+.+|++|.+ |..+++.-...+-+...+.-+
T Consensus       344 ~~~~~~~~~~~~~~l~~~~~~~~~-y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~  422 (485)
T KOG0569|consen  344 LMAVALLLMSIALFLSNSFGSWLS-YLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGF  422 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHH
Confidence            4443322111  1111111 1100 122344455555555543 45566778889865 666777666666666555555


Q ss_pred             Hhhhh
Q 020441          286 IGPYI  290 (326)
Q Consensus       286 i~~~~  290 (326)
                      ..+.+
T Consensus       423 ~fp~l  427 (485)
T KOG0569|consen  423 AFPPL  427 (485)
T ss_pred             HHHHH
Confidence            44444

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.47  E-value=1.9e-11  Score=117.41  Aligned_cols=271  Identities=11%  Similarity=0.052  Sum_probs=151.4

Q ss_pred             hhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhh
Q 020441            3 PASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLL   82 (326)
Q Consensus         3 ~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~   82 (326)
                      .+++++|+|.|...+...+.+.|.-|++        +++|++.+++++...++|..+|+.++-.+...      .|||..
T Consensus       110 ~~~~l~~ig~g~~~~~~~~li~~~~p~~--------~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~------~gw~~~  175 (489)
T PRK10207        110 IALGTIAVGNGLFKANPASLLSKCYPPK--------DPRLDGAFTLFYMSINIGSLISLSLAPVIADK------FGYSVT  175 (489)
T ss_pred             HHHHHHHhccccccCCHHHHHHHhcCCC--------chhhhcchhHHHHHHHHHHHHHHHHHHHHHHh------hChHHH
Confidence            5799999999999998888888877642        23668889999999999999999888776432      368887


Q ss_pred             HHHHHHHHHHHHHHHHHccCCcccc---ccch-hhhch------------------hhhhHH-----------------H
Q 020441           83 FIVFLGVITLGTILMCFLRKEEDKG---EKET-ADASV------------------NFYSYL-----------------V  123 (326)
Q Consensus        83 f~~~~~i~~l~~~l~~~l~~~~~~~---~~~~-~~~~~------------------~~~~~~-----------------~  123 (326)
                      |.+..+...++.+...+.++..++.   ++++ .+...                  .+....                 .
T Consensus       176 F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~  255 (489)
T PRK10207        176 YNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFR  255 (489)
T ss_pred             HHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            8664322222333333444221111   1000 00000                  000000                 0


Q ss_pred             HHHHHHHHhhcchhhHHHHHHH-----HHHHHHHH-HHHhhccc-ccccccccch-hhHHHHHHHHHHHHHHHhhhhhhc
Q 020441          124 SLSKSITTLLADVRMLLIIPLF-----AYSGLQQA-FVWAEFTK-EIVTPALGVS-GVGGAMAVYGAFDAICSLAAGRLT  195 (326)
Q Consensus       124 ~~~k~~~~~~~~~~~lll~p~~-----~~~g~~~~-f~~~~~~~-~~~~~~lg~~-~~~~~~~~~gi~~~i~~~~~G~l~  195 (326)
                      ++.+ .-+++++| .+...+++     ++..+.+. +....+.+ .......|.. .......+..+..++.+|+.|++.
T Consensus       256 ~~~~-~~~~~r~r-~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~  333 (489)
T PRK10207        256 EAFK-LDKTGRNK-MFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIY  333 (489)
T ss_pred             HHhc-CCHHHHHH-HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHH
Confidence            1111 01223332 22222222     11112222 11122222 1111122332 223344556677778899999999


Q ss_pred             cCCCChhh------HHHHHHHHHHHHHHHHH---hcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc-
Q 020441          196 TGLPSITF------IVSGGAIAQVVVFLWIL---INYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-  265 (326)
Q Consensus       196 d~~g~~~~------i~~~g~i~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~-  265 (326)
                      ||.++|+.      .+..|.++....+....   ...........++.....+++.|++.....+..++...+..|++. 
T Consensus       334 ~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~  413 (489)
T PRK10207        334 THLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLM  413 (489)
T ss_pred             HHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHH
Confidence            98876631      24456555444432110   011111111123455677889999999999999999999999874 


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhh
Q 020441          266 EGAFAQLKVWQCASIAVVFFIGPY  289 (326)
Q Consensus       266 ~~~fa~~~~~~~~g~~i~~~i~~~  289 (326)
                      ..+.+++.+.+++|+.++-.++..
T Consensus       414 g~~~g~~~l~~~ig~~lg~~l~~~  437 (489)
T PRK10207        414 GFILGMWFLTQAAAFLLGGYVATF  437 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667889999999999888877743

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.47  E-value=1.1e-11  Score=116.63  Aligned_cols=259  Identities=10%  Similarity=0.003  Sum_probs=154.3

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCC--------
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG--------   73 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~--------   73 (326)
                      +.+|++.|+|.|..+++...++.+..+          ++++++..++.....++|..+|.++...+.....+        
T Consensus        98 l~~~~l~G~g~g~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~  167 (410)
T TIGR00885        98 LVGLFILTAGLGFLETAANPYILVMGP----------ESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLD  167 (410)
T ss_pred             HHHHHHHHhhHHHHHhhhhHHHHHHCC----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhh
Confidence            467899999999999999999988887          45788889999999999999999998766532110        


Q ss_pred             ------------CCCCCchhhHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHH-
Q 020441           74 ------------GSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLL-  140 (326)
Q Consensus        74 ------------~~~~~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ll-  140 (326)
                                  .+..+||.+|.+..++.++..++..+.+.|+.+++++  +     +.+.++..+   +++++|+..+ 
T Consensus       168 ~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~~~--~-----~~~~~~~~~---~~~~~~~~~~~  237 (410)
T TIGR00885       168 KLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHSDA--K-----QISFSASLS---RLARIRHYREG  237 (410)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccc--c-----cccchhhHH---HHHhChhHHHH
Confidence                        0123589888765544443333333333332221111  1     011122222   2456666554 


Q ss_pred             HHHHHHHHHHHHHHHHhhccccccccc-ccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHH
Q 020441          141 IIPLFAYSGLQQAFVWAEFTKEIVTPA-LGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL  217 (326)
Q Consensus       141 l~p~~~~~g~~~~f~~~~~~~~~~~~~-lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~  217 (326)
                      ....++|.|.+.+.+ +.+. .|..+. .+.+  ........+.....+|.+++|.+.||+++|+ ++....+......+
T Consensus       238 ~l~~f~yvg~e~~~~-s~l~-~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~-~l~i~~~~~~~~~l  314 (410)
T TIGR00885       238 VIAQFFYVGVQIMCW-TFII-QYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK-VLMAYAIIGMALCL  314 (410)
T ss_pred             HHHHHHHHHHHHHHH-HHHH-HHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHH
Confidence            444677888776554 2222 232221 1221  2222344444667889999999999998875 54444444333322


Q ss_pred             HHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhhH
Q 020441          218 WILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISL  292 (326)
Q Consensus       218 ~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~~  292 (326)
                      +.  ...++      .....+.++.|++.+...+.++++..+..+++...+-+..-.. .+|+++.+.+...+.-
T Consensus       315 l~--~~~~~------~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~-~~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       315 GS--IFAGG------HVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA-IIGGGIVPPLQGFIID  380 (410)
T ss_pred             HH--HHcCC------hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH-HhccchHHHHHHHHHH
Confidence            21  22222      2235556667777777779999999888887654333322222 3888888887766653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.44  E-value=1.7e-11  Score=115.54  Aligned_cols=118  Identities=8%  Similarity=-0.020  Sum_probs=86.7

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHh
Q 020441          170 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL  249 (326)
Q Consensus       170 ~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~  249 (326)
                      .+..+..+.+..+.++++.++.|++.||+|+|+ ++..+.++....+..... ..++..  .....++..++.|++.+..
T Consensus       250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~-~l~~~~~~~~v~~~l~~~-~~~~~~--~~~~l~l~~~l~g~~~~~~  325 (418)
T TIGR00889       250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK-VMLLSLVAWALRFGFFAY-GDPEYF--GYALLFLSMIVYGCAFDFF  325 (418)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHH-cCcchh--hHHHHHHHHHHHHHHHHHH
Confidence            356788889999999999999999999999995 666666655544322111 111110  0133455678889999988


Q ss_pred             hhhhHhhHHhhccCC-chhhhhHHH-HHHHHHHHHHHHHhhhhh
Q 020441          250 NTQLSALLGILFKHD-TEGAFAQLK-VWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       250 ~~~~~~il~~~f~~~-~~~~fa~~~-~~~~~g~~i~~~i~~~~~  291 (326)
                      ++....++.+.+|++ +..+++.++ ..+++|..+++.++..+.
T Consensus       326 ~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~  369 (418)
T TIGR00889       326 NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMV  369 (418)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            888889999999976 577899886 678899999998887663

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.43  E-value=1.8e-11  Score=115.96  Aligned_cols=283  Identities=14%  Similarity=0.072  Sum_probs=172.1

Q ss_pred             CchhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCch
Q 020441            1 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTT   80 (326)
Q Consensus         1 li~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~   80 (326)
                      ++..|++||++.|..+++.+....+.+|          +++|+++.++..+..|+|.+++..++-.+-..     ..||+
T Consensus       131 ~~~~R~lqGl~~g~~~pa~~~i~~~W~P----------~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-----~~GW~  195 (466)
T KOG2532|consen  131 LLVLRFLQGLGQGVLFPAIGSILAKWAP----------PNERSTFIAILTAGSQLGTIITMPVSGLLCES-----SLGWP  195 (466)
T ss_pred             hHHHHHHhHHHHhHHHhhhhceeeeECC----------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-----CCCCc
Confidence            3678999999999999999999999999          46899999999999999999999887766543     36899


Q ss_pred             hhHHHHHHHHHHHHHHHHHc--cCCccccc---cchh-------hhchh--hhhHHHHHHHHHHHhhcchhhHHHHHHHH
Q 020441           81 LLFIVFLGVITLGTILMCFL--RKEEDKGE---KETA-------DASVN--FYSYLVSLSKSITTLLADVRMLLIIPLFA  146 (326)
Q Consensus        81 ~~f~~~~~i~~l~~~l~~~l--~~~~~~~~---~~~~-------~~~~~--~~~~~~~~~k~~~~~~~~~~~lll~p~~~  146 (326)
                      ..|.++.+++++-.++.+++  ++|.+.+.   +|.+       +++.+  ++.|+++       +++++....... .-
T Consensus       196 sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~-------i~ts~~vwai~~-~~  267 (466)
T KOG2532|consen  196 SIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKA-------ILTSPPVWAIWI-SA  267 (466)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHH-------HHcCHHHHHHHH-HH
Confidence            99998877776655554333  33433221   1100       00111  2345654       566777655442 23


Q ss_pred             HHHHHHHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCCh-------hhHHH-HHHHHHHHHH
Q 020441          147 YSGLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSI-------TFIVS-GGAIAQVVVF  216 (326)
Q Consensus       147 ~~g~~~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~-------~~i~~-~g~i~~~~~~  216 (326)
                      +.+....+..-.|.++|..+.+|.+  ..|+...+--+...+..++.|.++||..+|       +.++- ++.....+. 
T Consensus       268 f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~-  346 (466)
T KOG2532|consen  268 FGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVF-  346 (466)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHH-
Confidence            3333333333455667888887764  889999898999999999999999976542       11221 111222222 


Q ss_pred             HHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhh-ccCCchhhhhHHHHHHHHHHHHHHHHhhhhhH---
Q 020441          217 LWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGIL-FKHDTEGAFAQLKVWQCASIAVVFFIGPYISL---  292 (326)
Q Consensus       217 ~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~-f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~~---  292 (326)
                       +..+.+.++.+    ....+....++++-.+.+..-....... .|.......++.++.-++...+++.+...+..   
T Consensus       347 -l~~l~~~~~~~----~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t  421 (466)
T KOG2532|consen  347 -LLVLAFTSDEH----RLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNT  421 (466)
T ss_pred             -HHeeeecCCCc----chHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCC
Confidence             22234444321    1112222222333333333333444444 55555557888899999999888888876641   


Q ss_pred             --HH--HHHHHHHHHHHHHHHHHH
Q 020441          293 --QA--MLIVMVVGICVALVGILF  312 (326)
Q Consensus       293 --~~--~~~~~~~~~~~~~~~~~~  312 (326)
                        .+  ..++..++++++-+.|..
T Consensus       422 ~~eW~~VF~i~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  422 REEWRIVFLIAAGILIVGNIIFLF  445 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhchheeE
Confidence              22  223444445555544443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.41  E-value=4.1e-11  Score=112.00  Aligned_cols=230  Identities=10%  Similarity=0.054  Sum_probs=128.0

Q ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHccCCccccccchhh-hchhhhhH
Q 020441           43 GSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETAD-ASVNFYSY  121 (326)
Q Consensus        43 g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~  121 (326)
                      ++.+|......++|..+|+.++..+..       .+||.+|.+...++.+..++.++.+++++++++.+++ ++++++  
T Consensus       132 ~~~~g~~~~~~~~g~~~g~~~~g~l~~-------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  202 (396)
T TIGR00882       132 NFEYGKARMFGCVGWALCASIAGILFS-------IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASA--  202 (396)
T ss_pred             ccccchhhhhcccHHHHHHHHHhhhhc-------cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCC--
Confidence            455566666668888888888765432       3588788766555555554444433222111110000 000111  


Q ss_pred             HHHHHHHHHHhhcchhhHHHHHHHHHHHHH-HHH--HHhhccccccc-ccccchhhHHHHHHHHHHHHHHHhhhhhhccC
Q 020441          122 LVSLSKSITTLLADVRMLLIIPLFAYSGLQ-QAF--VWAEFTKEIVT-PALGVSGVGGAMAVYGAFDAICSLAAGRLTTG  197 (326)
Q Consensus       122 ~~~~~k~~~~~~~~~~~lll~p~~~~~g~~-~~f--~~~~~~~~~~~-~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~  197 (326)
                        ++.++..+.++||+.+.+.+..+..... ..+  +...|.+.+.. ...+.+..+....+.++.+.++.+..|++.||
T Consensus       203 --~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r  280 (396)
T TIGR00882       203 --FSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINR  280 (396)
T ss_pred             --CCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1123344577888765443322211111 001  11222222211 12233456777888888899999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhH-HHHH
Q 020441          198 LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQ-LKVW  275 (326)
Q Consensus       198 ~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~-~~~~  275 (326)
                      +++|+ .+..+.++....+..  ....++     ++..++..++.|++....+........+..|++. .++++. ++..
T Consensus       281 ~g~~~-~l~~~~~l~~l~~~~--~~~~~~-----~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~  352 (396)
T TIGR00882       281 IGAKN-ALLIAGTIMSVRIIG--SSFATT-----ALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFA  352 (396)
T ss_pred             hccch-hHHHHHHHHHHHHHH--HHhcCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHH
Confidence            99986 555555544433322  122333     2445666777888877666655666666677663 445664 7888


Q ss_pred             HHHHHHHHHHHhhhhh
Q 020441          276 QCASIAVVFFIGPYIS  291 (326)
Q Consensus       276 ~~~g~~i~~~i~~~~~  291 (326)
                      ..+|+.+++.+...+.
T Consensus       353 ~~lg~~~~~~l~G~l~  368 (396)
T TIGR00882       353 KQLAMIFLSTLAGNMY  368 (396)
T ss_pred             HHHHHHHHHHhHHHHH
Confidence            8999888887776663

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.40  E-value=6.3e-10  Score=106.09  Aligned_cols=272  Identities=17%  Similarity=0.161  Sum_probs=160.9

Q ss_pred             hhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCC--CCCchhhHHHHHHH-HHHHHHHHHHccCCccccccchhhhchhh
Q 020441           42 IGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGS--TSGTTLLFIVFLGV-ITLGTILMCFLRKEEDKGEKETADASVNF  118 (326)
Q Consensus        42 ~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~--~~~~~~~f~~~~~i-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~  118 (326)
                      |++-+|.=|+.-.+|.++--++...+....++..  .+..|..+.+..+. .+.+.+.++++|+++..++.+  +.+..-
T Consensus       186 ~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~--~~~~~~  263 (477)
T PF11700_consen  186 RGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLP--SGSSYL  263 (477)
T ss_pred             hchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCC--cchhHH
Confidence            4888888888888888777777666544332221  12345444332211 234556677787664421111  001112


Q ss_pred             hhHHHHHHHHHHHh-hcchhhHHH-HHHHHHH-HHHHHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhh
Q 020441          119 YSYLVSLSKSITTL-LADVRMLLI-IPLFAYS-GLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGR  193 (326)
Q Consensus       119 ~~~~~~~~k~~~~~-~~~~~~lll-~p~~~~~-g~~~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~  193 (326)
                      +.++++. ++++|. .++|+.... +-.++|. |.......   ...|.+..+|.+  +...+.++..++.++|+.++|+
T Consensus       264 ~~g~~~l-~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~---~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~  339 (477)
T PF11700_consen  264 RFGFKRL-WRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISF---AGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGW  339 (477)
T ss_pred             HHHHHHH-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2344443 333333 344544332 2223333 33322221   112444556765  5566678888899999999999


Q ss_pred             hccCCCCh--hhHHHHHHHHHHHHHHHHHhcccCCC-CCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc-hhhh
Q 020441          194 LTTGLPSI--TFIVSGGAIAQVVVFLWILINYSVTS-GVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAF  269 (326)
Q Consensus       194 l~d~~g~~--~~i~~~g~i~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~f  269 (326)
                      +.||+|.|  + .+....++..+..+..++-..++. .....+..++..+++|+..+..|+.--++++++.|+++ .+-|
T Consensus       340 l~~r~g~k~~~-~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efF  418 (477)
T PF11700_consen  340 LQDRFGPKTKR-TLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFF  418 (477)
T ss_pred             HHHHhCCchhH-HHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHH
Confidence            99999987  4 333333333222122222111110 11123668899999999999999999999999999876 4579


Q ss_pred             hHHHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020441          270 AQLKVWQCASIAVVFFIGPYIS-----LQAMLIVMVVGICVALVGILFLTIQVEKA  320 (326)
Q Consensus       270 a~~~~~~~~g~~i~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (326)
                      +.|.+..=..+.+++++...+.     ...-...+.++++++.+.+..++....||
T Consensus       419 gly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~~  474 (477)
T PF11700_consen  419 GLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGRE  474 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhhh
Confidence            9999999999999999887664     33445666777788888877665444433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00896 CynX cyanate transporter

Probab=99.39  E-value=6.1e-11  Score=109.08  Aligned_cols=251  Identities=13%  Similarity=0.097  Sum_probs=138.9

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..++....++.+..+           ++|++..|+......++..+|+.+...+....    .++||.
T Consensus        91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~----~~~w~~  155 (355)
T TIGR00896        91 FAGTALIGVGIAIINVLLPSLIKRDFP-----------QRVGLMTGLYSMALMGGAALAAAATVPLAQHS----GGHWQQ  155 (355)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHhCc-----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHH
Confidence            467899999999888766555544443           47899999998888888888887765553221    124887


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHH-HHHHHHHHHhhcc
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAY-SGLQQAFVWAEFT  160 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~-~g~~~~f~~~~~~  160 (326)
                      .|....++.++..  ..++++.+++++++   ++ .++.+.       .+.++||+...+...... .....++  ..+.
T Consensus       156 ~f~~~~~~~~~~~--~~~~~~~~~~~~~~---~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l  220 (355)
T TIGR00896       156 ALAWWALPALLAL--LAWIPQVRRRVAAN---QT-TTRLTP-------VRIWRSPLAWQVTVFFGLQSGLYYSL--IGWL  220 (355)
T ss_pred             HHHHHHHHHHHHH--HHHhhhhccccCCC---CC-CCCCCC-------chhhcCHhHHHHHHHHHHHHHHHHHH--HHHH
Confidence            7765443332222  23333221111111   00 011111       124566665443222111 1111111  1122


Q ss_pred             cccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHH
Q 020441          161 KEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM  238 (326)
Q Consensus       161 ~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (326)
                      +.+.++ .|.  ++.+......+++.++++++.|++.||+++|+..+..+.++.....+..  .+.++.     .. ...
T Consensus       221 p~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~-~~~  291 (355)
T TIGR00896       221 PAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGL--LFAPMH-----GL-WAW  291 (355)
T ss_pred             HHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHH--HHhhhh-----HH-HHH
Confidence            223322 343  4678888899999999999999999999543235444444444333221  122221     11 123


Q ss_pred             HHHHhhhhHHhhhhhHhhHHhhccCC-c-hhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          239 AALLGIGDGVLNTQLSALLGILFKHD-T-EGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       239 ~~l~G~~d~~~~~~~~~il~~~f~~~-~-~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      .+++|++.+...+...+...+..+++ + ...++..+....++..+++.+...+.
T Consensus       292 ~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~  346 (355)
T TIGR00896       292 ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLH  346 (355)
T ss_pred             HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888777777766665543 2 34556666666666677776665543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.39  E-value=1.2e-10  Score=112.15  Aligned_cols=255  Identities=15%  Similarity=0.116  Sum_probs=159.2

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +...++.|++.+..+++..+++-+..|+          ++..+..++.-..++.+.++|+.++-.+....      |...
T Consensus       107 l~~~fl~g~~~a~~~PA~~A~ip~lV~~----------~~L~~A~al~s~~~niar~iGPalgG~Lva~~------G~~~  170 (524)
T PF05977_consen  107 LILTFLLGIGSAFFNPAWQAIIPELVPK----------EDLPAANALNSISFNIARIIGPALGGILVAFF------GAAA  170 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccH----------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHH------HHHH
Confidence            4567899999999999999999999985          47788888888888999999988886654321      2223


Q ss_pred             hHHHHHHHHHHHHHH-HHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhhc
Q 020441           82 LFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLA-DVRMLLIIPLFAYSGLQQAFVWAEF  159 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~-~~~~lll~p~~~~~g~~~~f~~~~~  159 (326)
                      .|.+-. ++.+..+. ...++++.++++.        +++++.+.+++-++..+ +|.+...+......++..+-++..+
T Consensus       171 ~f~ina-lsfl~~i~~l~~~~~~~~~~~~--------~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLl  241 (524)
T PF05977_consen  171 AFLINA-LSFLISILALLRWKPPPPPSSL--------PRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALL  241 (524)
T ss_pred             HHHHHH-HHHHHHHHHHHHcccccccccc--------chhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhh
Confidence            344332 22222222 2233322211111        11233444455555554 4544433322223333322233333


Q ss_pred             ccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHH
Q 020441          160 TKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLI  237 (326)
Q Consensus       160 ~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (326)
                      + .+..+.+|.  ...|+.+.++|++.++|+.+.+++.+|+++++ ++..+.+......+.  +...++     .+...+
T Consensus       242 P-l~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~-lv~~~~~~~a~~~~~--lal~~~-----~~~~~~  312 (524)
T PF05977_consen  242 P-LFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRR-LVLLASLLFALALLL--LALSPS-----FWLALI  312 (524)
T ss_pred             h-HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch-hhHHHHHHHHHHHHH--HhcchH-----HHHHHH
Confidence            2 344455554  37789999999999999999999998888764 655565554443322  234343     255667


Q ss_pred             HHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          238 MAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       238 ~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ..++.|++....++..++.+.+..|++ +.-++|+|+.....+..++.++...+
T Consensus       313 ~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~l  366 (524)
T PF05977_consen  313 ALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFL  366 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778889999999999999999999987 46677777766665555555555444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=1.3e-12  Score=117.51  Aligned_cols=258  Identities=17%  Similarity=0.139  Sum_probs=158.8

Q ss_pred             CchhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCch
Q 020441            1 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTT   80 (326)
Q Consensus         1 li~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~   80 (326)
                      |+.+|.+||+|.+..|++.-+.+.+.-|+         |++||+..|+-.++..+|.++|+.++-++...      -|.+
T Consensus       162 l~vAR~LQgvgsA~~~tsglamlAd~f~~---------d~er~~vmGialgfislG~lvgPpfGGilYe~------~Gk~  226 (464)
T KOG3764|consen  162 LFVARSLQGVGSAFADTSGLAMLADVFPE---------DNERGSVMGIALGFISLGVLVGPPFGGILYEF------AGKS  226 (464)
T ss_pred             HHHHHHHhhhhHHHHHhhhHHHHHHHccc---------chhhhHHHHHHHHHHhccceecCCcccchHhh------cCCc
Confidence            46899999999999999988888777664         46789999999999999999999998766442      2456


Q ss_pred             hhHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcc
Q 020441           81 LLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFT  160 (326)
Q Consensus        81 ~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~  160 (326)
                      .+|+++.++.++...+-+++-+|.++.+++ +    .+..+       +++++++|+..+..-....++...+|.-..++
T Consensus       227 aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~-~----~~~~~-------~~~Ll~dP~I~~~agai~~~n~~lafLePtls  294 (464)
T KOG3764|consen  227 APFLVLAIVLLLDGALQLLVIEPTEMDPDS-T----EQGTP-------MWSLLMDPYILLIAGAITFSNSSLAFLEPTLS  294 (464)
T ss_pred             CcHHHHHHHHHHHHHHHHheeCccccCccc-c----ccCcc-------HHHHHhCchHhhhhcchhhccchHHHhCcccH
Confidence            889998888888887777765554433221 1    11223       34478899998877777778887887644332


Q ss_pred             cccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHH-HHHHHHHHHHHHHHHhcccCCCCCcchHH-HH
Q 020441          161 KEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIV-SGGAIAQVVVFLWILINYSVTSGVLGTLY-PL  236 (326)
Q Consensus       161 ~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~-~~g~i~~~~~~~~~~l~~~~~~~~~~~~~-~~  236 (326)
                      . +..+...-  -.+|.+.+-..+...++..++|++.||++..+... ..+.+.........  .+..+  +.+.+. -.
T Consensus       295 l-wm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~i--P~~~~--~~~L~vp~~  369 (464)
T KOG3764|consen  295 L-WMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPI--PFATS--IAQLWVPNF  369 (464)
T ss_pred             H-HHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchh--Hhhhh--HHHHhhhhH
Confidence            1 22222221  14555566677788999999999999998432222 22222211111111  11111  000111 23


Q ss_pred             HHHHHHhhhhHHhhhhhHhhHHhhccC--Cc-hhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          237 IMAALLGIGDGVLNTQLSALLGILFKH--DT-EGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       237 ~~~~l~G~~d~~~~~~~~~il~~~f~~--~~-~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .+.+..+..|+..-+...-++-..-.+  +. ...+++.+..-++|.++++.++..+
T Consensus       370 ~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~i  426 (464)
T KOG3764|consen  370 GLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSL  426 (464)
T ss_pred             HHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchh
Confidence            445555666766666555544322111  01 2245566666677777777777655

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.34  E-value=1.6e-11  Score=116.74  Aligned_cols=186  Identities=17%  Similarity=0.118  Sum_probs=118.3

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|+++|+..|..|++...|+...=.+          ++||+-+|++++..++|+++|+++++.+.+.+......|||.
T Consensus       138 ialr~llGl~es~~wP~~~~~lg~wy~~----------~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~  207 (495)
T KOG2533|consen  138 IALRFLLGLFESGGWPGVVAILGNWYGK----------SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRW  207 (495)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHhhcCh----------hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCcee
Confidence            4569999999999999998888877774          589999999999999999999999999866443334568998


Q ss_pred             hHHHHHHHHHHHH-HHHHHccCCcc-c--cccch-----hhhchhhhhH--HHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 020441           82 LFIVFLGVITLGT-ILMCFLRKEED-K--GEKET-----ADASVNFYSY--LVSLSKSITTLLADVRMLLIIPLFAYSGL  150 (326)
Q Consensus        82 ~f~~~~~i~~l~~-~l~~~l~~~~~-~--~~~~~-----~~~~~~~~~~--~~~~~k~~~~~~~~~~~lll~p~~~~~g~  150 (326)
                      .|++=.+++++.. +.++++|+.+. .  .++++     .+.+..++.+  -+...++..+.++||+........+....
T Consensus       208 ~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~l  287 (495)
T KOG2533|consen  208 LFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKL  287 (495)
T ss_pred             ehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhh
Confidence            8987766665544 33556764322 1  11111     0000000000  00123556668889998776644333332


Q ss_pred             HHHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCC
Q 020441          151 QQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGL  198 (326)
Q Consensus       151 ~~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~  198 (326)
                      ... -...+.+.+.+...|.+  +.....+.+.++.+++.++.|.++||.
T Consensus       288 v~~-~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~  336 (495)
T KOG2533|consen  288 VNY-GFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL  336 (495)
T ss_pred             ccc-cHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence            211 11222222333322232  555667788888999999999999994

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.33  E-value=8.7e-10  Score=105.63  Aligned_cols=305  Identities=9%  Similarity=0.021  Sum_probs=163.9

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.++++.|+|.|..+++..+++.+..+++       ++++|++.+++++...++|..+|..+...+...      .+|+.
T Consensus       106 ~~~~~l~g~g~g~~~~~~~~~~a~~~~~~-------~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~------~g~~~  172 (475)
T TIGR00924       106 FYGLGTIAVGSGLFKANPSSMVGKLYERG-------DMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN------YGYHV  172 (475)
T ss_pred             HHHHHHHHhccccccCCHHHHHHHhcCCC-------CcccccceehhHHHHHHHHHHHHHHHHHHHHHh------cChHH
Confidence            35788999999999988888877776632       013688899999999999999999998766432      35887


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccc-c----chhhhchhhh-hH------------H------H--------------
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGE-K----ETADASVNFY-SY------------L------V--------------  123 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~-~----~~~~~~~~~~-~~------------~------~--------------  123 (326)
                      .|.+..+..+++.+...+.++..++.+ +    ++++++..+. ..            +      .              
T Consensus       173 ~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (475)
T TIGR00924       173 GFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVII  252 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            777655444455555555443221111 0    0000000000 00            0      0              


Q ss_pred             ---HHHHH-HHHhhcchhhHHHHHHHHHHHHH-HHH----H-Hhhcccccccccc-cch-hhHHHHHHHHHHHHHHHhhh
Q 020441          124 ---SLSKS-ITTLLADVRMLLIIPLFAYSGLQ-QAF----V-WAEFTKEIVTPAL-GVS-GVGGAMAVYGAFDAICSLAA  191 (326)
Q Consensus       124 ---~~~k~-~~~~~~~~~~lll~p~~~~~g~~-~~f----~-~~~~~~~~~~~~l-g~~-~~~~~~~~~gi~~~i~~~~~  191 (326)
                         +..++ ..+....+|...+.|+++..-.. ..|    . ...+.+......+ +.+ ..++...+.++..++.+++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~  332 (475)
T TIGR00924       253 FFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVL  332 (475)
T ss_pred             HHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHH
Confidence               00000 00000112322233333222111 111    0 1111111111111 111 25667778888888888875


Q ss_pred             h----hhccC-CCChhhH-HHHHHHHHHHHHHHHHh--cccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccC
Q 020441          192 G----RLTTG-LPSITFI-VSGGAIAQVVVFLWILI--NYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH  263 (326)
Q Consensus       192 G----~l~d~-~g~~~~i-~~~g~i~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~  263 (326)
                      .    ++.|| ++.+... +..|.++...++....+  ...++....+++...+..+++++++....+..+++..+..|+
T Consensus       333 ~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~  412 (475)
T TIGR00924       333 AMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQ  412 (475)
T ss_pred             HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence            5    45554 2222111 35566665544432211  111111011246677788999999999999999999999998


Q ss_pred             C-chhhhhHHHHHHHHHHHHHHHHhhhhhH---HH-HHHHHHHHHHHHHHHHHHHHHHHhh
Q 020441          264 D-TEGAFAQLKVWQCASIAVVFFIGPYISL---QA-MLIVMVVGICVALVGILFLTIQVEK  319 (326)
Q Consensus       264 ~-~~~~fa~~~~~~~~g~~i~~~i~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~  319 (326)
                      + +...++.+.+..++|..++..+.+....   .. ....+...+++..+.+..+.++.+|
T Consensus       413 ~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  473 (475)
T TIGR00924       413 RLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVPWLNR  473 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7 5778889999999999998777764421   11 1222233333444444455555554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.32  E-value=1.2e-09  Score=101.95  Aligned_cols=229  Identities=10%  Similarity=0.017  Sum_probs=125.8

Q ss_pred             cchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhh
Q 020441           40 TVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFY  119 (326)
Q Consensus        40 ~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~  119 (326)
                      ++++.+.+.......+|.++|+.....+..      ..+||..|.+..++..+..+..+++++++++++++    ++.+.
T Consensus       129 ~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~------~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~----~~~~~  198 (390)
T TIGR02718       129 RTLAKGNAVQIAGVMIGFFGGGAGTLVLFG------KFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEA----PLARR  198 (390)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCcccc----chhhH
Confidence            344555565666556677777755544433      24699888877766665555555554432221110    00011


Q ss_pred             hHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcccccccc-cccchhhHHHHHHHHHHH-HHHHhhhhhhccC
Q 020441          120 SYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP-ALGVSGVGGAMAVYGAFD-AICSLAAGRLTTG  197 (326)
Q Consensus       120 ~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~-~lg~~~~~~~~~~~gi~~-~i~~~~~G~l~d~  197 (326)
                             ++..+.+++|+........+..........+..+ .+..+ ..+.++++....+.++.+ .++..+.|++.||
T Consensus       199 -------~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r  270 (390)
T TIGR02718       199 -------ASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSK-LYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRR  270 (390)
T ss_pred             -------HHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhh-HHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence                   2233466777654433333222222222222222 23222 223347788777777544 4568899999999


Q ss_pred             CCChhhHHHHHHHHHHHHHHHHH-h-c-ccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccC-C-chhhhhHH
Q 020441          198 LPSITFIVSGGAIAQVVVFLWIL-I-N-YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH-D-TEGAFAQL  272 (326)
Q Consensus       198 ~g~~~~i~~~g~i~~~~~~~~~~-l-~-~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~-~-~~~~fa~~  272 (326)
                      +++++ .+..+..+........+ . . +....    +...+...++.+++.+...+..++...+..++ + +.+.++.+
T Consensus       271 ~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~  345 (390)
T TIGR02718       271 AGLWR-TFILGVGLAGSLALLWFAQAAFWLAPG----IAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAV  345 (390)
T ss_pred             hhHHH-HHHHHHHHHHHHHHHHHHHHHcccCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence            99885 55545444321111111 1 1 11111    12333434455666777777777776676654 4 46688999


Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 020441          273 KVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       273 ~~~~~~g~~i~~~i~~~~~  291 (326)
                      +..+++|..+++.++..+.
T Consensus       346 ~~~~~lg~~~g~~~~G~l~  364 (390)
T TIGR02718       346 QSTRDLGELIASSIAGYLT  364 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887664

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09669 putative symporter YagG; Provisional

Probab=99.30  E-value=5.9e-10  Score=105.91  Aligned_cols=233  Identities=12%  Similarity=-0.020  Sum_probs=125.1

Q ss_pred             CcchhhhhHHHHHHHHHhHHHHHHHHHHHhc-CCCCCCCCCchhhHHHHHHHHHHHHHHHHHccCCccccccchhhhchh
Q 020441           39 GTVIGSFNGEFWGMFASHQFVGNLITLAVLK-DDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVN  117 (326)
Q Consensus        39 ~~~~g~~~gif~~~~~~~~iiG~li~~~~~~-~~~~~~~~~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~  117 (326)
                      +++|++..++.....+.|..+++.+...+.. ..+.....+|+..+.++.+++.+..++.++..+ ++.++++  +    
T Consensus       141 ~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~-e~~~~~~--~----  213 (444)
T PRK09669        141 PRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTK-ERYTPEV--D----  213 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeE-EecCCCC--c----
Confidence            3568888888888778887777765432221 111112356777666655555444443333211 1111111  0    


Q ss_pred             hhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccch-hhHHHHHHHHHHHHHHHhhhhhhcc
Q 020441          118 FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS-GVGGAMAVYGAFDAICSLAAGRLTT  196 (326)
Q Consensus       118 ~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~-~~~~~~~~~gi~~~i~~~~~G~l~d  196 (326)
                      ++.+.++.++   ++++||..+.+....+..........+ +..-+.+..++.. ..+..+....+..+++.++.+++.|
T Consensus       214 ~~~~~~~~~~---~~~~n~~~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~  289 (444)
T PRK09669        214 NSSSVWKDLK---LLLGNSQWRIMFIFNVVLLTAVVTRGG-ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLG  289 (444)
T ss_pred             CCCCHHHHHH---HHhCCchHHHHHHHHHHHHHHHHHHhh-hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122333333   356787766544333322222211111 1111122223322 2334445555677788889999999


Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccC------Cc-h-hh
Q 020441          197 GLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH------DT-E-GA  268 (326)
Q Consensus       197 ~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~------~~-~-~~  268 (326)
                      |+|+|+ .+..+.+.........++ .++++    ++..++..+++|++.+..++...+++++..+.      ++ + ..
T Consensus       290 r~gk~~-~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~  363 (444)
T PRK09669        290 KFDRVR-AFKWTIVAFVILSALIFF-IPPSN----VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLV  363 (444)
T ss_pred             HhChHH-HHHHHHHHHHHHHHHHHH-hCcch----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHH
Confidence            999885 555555443322221121 22322    34556667889999999999999999988752      11 2 24


Q ss_pred             hhHHHHHHHHHHHHHHHHhh
Q 020441          269 FAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       269 fa~~~~~~~~g~~i~~~i~~  288 (326)
                      ++.+.+.+.+|.+++..+..
T Consensus       364 ~s~~~~~~klg~alg~~i~g  383 (444)
T PRK09669        364 FSTNLFAIKLGLAIGGAVVG  383 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66777777777777666554

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.27  E-value=1.5e-10  Score=109.34  Aligned_cols=257  Identities=16%  Similarity=0.087  Sum_probs=143.2

Q ss_pred             hhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCC-CCchhhHHHH
Q 020441            8 LGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGST-SGTTLLFIVF   86 (326)
Q Consensus         8 ~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~-~~~~~~f~~~   86 (326)
                      ..++.....+...+...|..++         +++|.+..++-......|..+.+.+...+....++.+. .+|+....++
T Consensus       113 ~~~~~t~~~i~~~al~~~lt~~---------~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~  183 (428)
T PF13347_consen  113 FDIAYTFVQIPYNALIPELTPD---------PDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVL  183 (428)
T ss_pred             HHHhhhhccCchhhcCcccccc---------HhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHH
Confidence            3445555555555556665553         35777777765555555554333333333322111112 3677666655


Q ss_pred             HHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020441           87 LGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP  166 (326)
Q Consensus        87 ~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~  166 (326)
                      .++.++..++..+.-+.++++++     +++++.++++.+|+   +++||+.+.+.-..+..........+.+ .-+.+.
T Consensus       184 ~iv~~v~~~i~~~~~ke~~~~~~-----~~~~~~~~~~~~~~---~~~nr~~~~l~~~~~~~~~~~~~~~~~~-~y~~~~  254 (428)
T PF13347_consen  184 AIVGLVFFLITFFFVKERSVEVT-----EQEKKISLRDSLRS---LFRNRPFRILLLAFFLQWLAFALMNTFL-PYYFTY  254 (428)
T ss_pred             HHHHHHHhhhhhheeeecccccc-----ccccccccccchhh---hcccchHHHHHHHHHHHHhhhhhhhhHH-HHHHHH
Confidence            55555544444333221111111     11123345555444   5567776655444444333322221111 012222


Q ss_pred             cccch-hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhh
Q 020441          167 ALGVS-GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG  245 (326)
Q Consensus       167 ~lg~~-~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~  245 (326)
                      .+|.+ ..+....+..+...++.++++++.||+|+|+ .+..+.++.+...++..+...++     ++..++..++.|++
T Consensus       255 vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~-~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~l~gi~  328 (428)
T PF13347_consen  255 VLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKK-VYIIGLLLAALGFLLLFFLGPGS-----PWLVLILFILAGIG  328 (428)
T ss_pred             HhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHcccee-ehhhhHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHhHhh
Confidence            33333 4556667788888999999999999999996 77777766665544322222123     36678888999999


Q ss_pred             hHHhhhhhHhhHHhhccCC------c-h-hhhhHHHHHHHHHHHHHHHHhh
Q 020441          246 DGVLNTQLSALLGILFKHD------T-E-GAFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       246 d~~~~~~~~~il~~~f~~~------~-~-~~fa~~~~~~~~g~~i~~~i~~  288 (326)
                      .+..+....+++++..+.+      + + ..+|.+.+.+-++.+++..+..
T Consensus       329 ~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g  379 (428)
T PF13347_consen  329 YGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG  379 (428)
T ss_pred             hcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence            9999999999999987632      2 2 2456777777777766666554

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.26  E-value=5.3e-09  Score=100.20  Aligned_cols=238  Identities=14%  Similarity=0.075  Sum_probs=121.7

Q ss_pred             CcchhhhhHHHHHHHHHhHHHHHHHHH-HHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHH-ccCCccccccchhhhch
Q 020441           39 GTVIGSFNGEFWGMFASHQFVGNLITL-AVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCF-LRKEEDKGEKETADASV  116 (326)
Q Consensus        39 ~~~~g~~~gif~~~~~~~~iiG~li~~-~~~~~~~~~~~~~~~~~f~~~~~i~~l~~~l~~~-l~~~~~~~~~~~~~~~~  116 (326)
                      +++|.+.+++-+...+.+..++..+.. .+.......+..+++....++.++..+..++.++ .|++.++++++   .++
T Consensus       138 ~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~---~~~  214 (473)
T PRK10429        138 KREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQV---SAE  214 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccc---ccc
Confidence            467888788755555655444444332 2211111111234555444444333333333322 22221111100   011


Q ss_pred             hhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccc-hhhHHHHHHHHHHHHHHHhhhhhhc
Q 020441          117 NFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV-SGVGGAMAVYGAFDAICSLAAGRLT  195 (326)
Q Consensus       117 ~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~-~~~~~~~~~~gi~~~i~~~~~G~l~  195 (326)
                      +++.+++|.++.   +++||..+.++-..+..........+ +..-+.+..++. +..+..+.+.+++.+++.++.+++.
T Consensus       215 ~~~~~~~~~~~~---~~~n~~~~~ll~~~~~~~~~~~~~~~-~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~  290 (473)
T PRK10429        215 GSHLTLKDIVAL---IYKNDQLSCLLGMALAYNIASNIING-FAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLV  290 (473)
T ss_pred             ccCCCHHHHHHH---HhcCHHHHHHHHHHHHHHHHHHHHhh-heeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122345555443   44677665544332222222221111 111122223332 2455666777788899999999999


Q ss_pred             cCCCChhhHHHHHHHHHHHHHHHHHh-c-ccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccC------Cc-h
Q 020441          196 TGLPSITFIVSGGAIAQVVVFLWILI-N-YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH------DT-E  266 (326)
Q Consensus       196 d~~g~~~~i~~~g~i~~~~~~~~~~l-~-~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~------~~-~  266 (326)
                      ||+|+|+ .+..+.++.++..+..+. . ..++.    ++..++..++.|++.+..+....+++++..+.      +| +
T Consensus       291 ~r~gkk~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~  365 (473)
T PRK10429        291 KSLSRRI-LWAGASIFPVLSCGVLLLMGLAAPHN----ALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCE  365 (473)
T ss_pred             HHcCcHH-HHHHHHHHHHHHHHHHHHHhccCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccch
Confidence            9999985 655555443332222111 1 12221    34456667788999999999989999988542      22 2


Q ss_pred             -hhhhHHHHHHHHHHHHHHHHhh
Q 020441          267 -GAFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       267 -~~fa~~~~~~~~g~~i~~~i~~  288 (326)
                       ..|+...+.+-+|.+++..+..
T Consensus       366 G~~~s~~~~~~K~~~al~~~i~g  388 (473)
T PRK10429        366 SIAYSVQTMVVKGGSAFAAFFIG  388 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHH
Confidence             2567777777777777665554

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.25  E-value=2.4e-10  Score=112.98  Aligned_cols=187  Identities=16%  Similarity=0.119  Sum_probs=114.7

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCC--------
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG--------   73 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~--------   73 (326)
                      +.+|+++|+|.+..++...+|+.|+.+          +++|+++.|++.....+|..+|.+++..+.....+        
T Consensus       176 ~~~r~l~GiG~~~~~~~~~~~i~d~~~----------~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~  245 (633)
T TIGR00805       176 LVSQLLRGIGATPIFPLGISYIDDFAK----------SKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTED  245 (633)
T ss_pred             HHHHHHHhccCCcchhcCchhhhccCC----------ccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCC
Confidence            579999999999999999999999999          46899999999999999999999888766532100        


Q ss_pred             --C----CCC--CchhhHHHHHHHHHHHHHHHHHccCCcccc----c-c-chhhh-c-------hhhhhHHHHHHHHHHH
Q 020441           74 --G----STS--GTTLLFIVFLGVITLGTILMCFLRKEEDKG----E-K-ETADA-S-------VNFYSYLVSLSKSITT  131 (326)
Q Consensus        74 --~----~~~--~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~----~-~-~~~~~-~-------~~~~~~~~~~~k~~~~  131 (326)
                        .    ..|  .|+..|++..+++++..+..+++|+..+++    + + ++.+. +       .......++..+...+
T Consensus       246 ~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (633)
T TIGR00805       246 VILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKR  325 (633)
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHH
Confidence              0    111  277778766655655555555555432211    0 0 00000 0       0000122344455666


Q ss_pred             hhcchhhHHHHHHHHHH-HHHHHHHHhhcccccccccccch--hhHHHHHHHHH-HHHHHHhhhhhhccCCCC
Q 020441          132 LLADVRMLLIIPLFAYS-GLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGA-FDAICSLAAGRLTTGLPS  200 (326)
Q Consensus       132 ~~~~~~~lll~p~~~~~-g~~~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi-~~~i~~~~~G~l~d~~g~  200 (326)
                      +++||..+......... +...++  ..+.+.|....+|.+  ..++...+..+ +.+++.++.|++.||++.
T Consensus       326 Ll~n~~f~~~~l~~~~~~~~~~~~--~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~  396 (633)
T TIGR00805       326 LLCNPIYMLVILAQVIDSLAFNGY--ITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKL  396 (633)
T ss_pred             HHcCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecc
Confidence            78888776544322222 111121  123334555556654  56666655555 457899999999999874

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.24  E-value=7e-09  Score=100.06  Aligned_cols=268  Identities=12%  Similarity=0.091  Sum_probs=147.7

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+++++|++.|...+...+++.+.-|++        ++++++.+++++...++|..+|+.+...+..      ..|||.
T Consensus       116 ~~~~~l~gig~g~~~~~~~~l~~~~f~~~--------~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~------~~g~~~  181 (500)
T PRK09584        116 YMGMATIAVGNGLFKANPSSLLSTCYEKD--------DPRLDGAFTMYYMSINIGSFFSMLATPWLAA------KYGWSV  181 (500)
T ss_pred             HHHHHHHHHhhhcccCCHHHHHHHhcCCC--------chhhhhcchHHHHHHHHHHHHHHHHHHHHHH------hhCHHH
Confidence            35678999999998887777777776532        3355667888888889999999988876643      246888


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccc---cccch-hhhchh------------------hhhHH-------------HHHH
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDK---GEKET-ADASVN------------------FYSYL-------------VSLS  126 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~---~~~~~-~~~~~~------------------~~~~~-------------~~~~  126 (326)
                      .|.+..+...++.+..++.++..++   +++.+ .+....                  +..+.             ....
T Consensus       182 ~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (500)
T PRK09584        182 AFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVIFG  261 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            8876554444444333332211111   11000 000000                  00000             0000


Q ss_pred             HHHHH--hhcchhhHHHHHHHHHHHHHHHHHH---------hhccccccc-ccccch-hhHHHHHHHHHHHHHHHhhh--
Q 020441          127 KSITT--LLADVRMLLIIPLFAYSGLQQAFVW---------AEFTKEIVT-PALGVS-GVGGAMAVYGAFDAICSLAA--  191 (326)
Q Consensus       127 k~~~~--~~~~~~~lll~p~~~~~g~~~~f~~---------~~~~~~~~~-~~lg~~-~~~~~~~~~gi~~~i~~~~~--  191 (326)
                      ++..+  ...++|.+...+.++..   ..|+.         ..+...... +..|.. ..++...+.++..++.+++.  
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~---i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~  338 (500)
T PRK09584        262 KEAFAMKGAARRKMIVAFILMLEA---IIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAA  338 (500)
T ss_pred             HHHhhcCHHHHHHHHHHHHHHHHH---HHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHH
Confidence            01001  11123444433332211   11221         111111111 112322 24455567776666776666  


Q ss_pred             --hhhccCCCChhhHHHHHHHHHHHHHHHHHh--cccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-ch
Q 020441          192 --GRLTTGLPSITFIVSGGAIAQVVVFLWILI--NYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TE  266 (326)
Q Consensus       192 --G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~  266 (326)
                        +|+.||.+... .+.+|.++..+.+..+..  ...++......+.....++++|++.....+..+++..+..|++ +.
T Consensus       339 ~~~~l~~r~~~~~-~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg  417 (500)
T PRK09584        339 IYNKMGDRLPMPH-KFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMG  417 (500)
T ss_pred             HHHHhCcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHH
Confidence              66677766543 566676666655543221  2211111122345677789999999999999999999999987 56


Q ss_pred             hhhhHHHHHHHHHHHHHHHHh
Q 020441          267 GAFAQLKVWQCASIAVVFFIG  287 (326)
Q Consensus       267 ~~fa~~~~~~~~g~~i~~~i~  287 (326)
                      ...+.+.+.+++|..++-.+.
T Consensus       418 ~~~g~~~l~~a~g~~~~g~~~  438 (500)
T PRK09584        418 FIMGSWFLTTAGAALIAGYVA  438 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            678888888888877766655

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.16  E-value=3.6e-09  Score=96.53  Aligned_cols=284  Identities=11%  Similarity=0.054  Sum_probs=147.5

Q ss_pred             HhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHH--HHhcCCCCCCCCCchhhH
Q 020441            6 LYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITL--AVLKDDKGGSTSGTTLLF   83 (326)
Q Consensus         6 ~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~--~~~~~~~~~~~~~~~~~f   83 (326)
                      .++|.-.|.-|.+.+..++..-+|          ++||+..|++-...+.|..+-+++..  .+..      ..+||..|
T Consensus       125 ~lng~fQg~Gwpp~~~~i~~Wfsr----------~eRG~~~siWn~shNiGGal~~~~~~la~~~~------~~~w~~~f  188 (448)
T COG2271         125 VLNGWFQGMGWPPCARTITHWFSR----------KERGTWWSIWNTSHNIGGALAPLVALLAFFAF------HGGWRAAF  188 (448)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHcCc----------cccCceEEEehhhhhcccchHHHHHHHHHHHh------ccchhHHH
Confidence            578888888899998889888885          47998777776666655444333331  1111      23688777


Q ss_pred             HHHHHHHHHHHHHH-HHccCCcccc---c-----cchhh---hchhhh-hHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q 020441           84 IVFLGVITLGTILM-CFLRKEEDKG---E-----KETAD---ASVNFY-SYLVSLSKSITTLLADVRMLLIIPLFAYSGL  150 (326)
Q Consensus        84 ~~~~~i~~l~~~l~-~~l~~~~~~~---~-----~~~~~---~~~~~~-~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~  150 (326)
                      ++=.+++++-.++. +.+|+++++.   +     +|..|   ++++.+ .+.+|.+.+.  +++||...++.....+.-.
T Consensus       189 ~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~Y--VL~Nk~iW~la~a~vfvYi  266 (448)
T COG2271         189 YFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKY--VLKNKLIWLLALANVFVYV  266 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHH--HHcChHHHHHHHHHHHHHH
Confidence            65554444433333 3444432211   0     11111   111111 3456655543  6678776655432221110


Q ss_pred             HHHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCC--CChhhHHHHHHHHHHHHHHHHHhcccCC
Q 020441          151 QQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGL--PSITFIVSGGAIAQVVVFLWILINYSVT  226 (326)
Q Consensus       151 ~~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~--g~~~~i~~~g~i~~~~~~~~~~l~~~~~  226 (326)
                      . =+-..+-.+.|..+..|.+  ........+=.+...|+++.|+++||.  |||.+.-++..+....+.+.  ....|+
T Consensus       267 v-R~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~--~w~~~~  343 (448)
T COG2271         267 V-RYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVL--YWLAPN  343 (448)
T ss_pred             H-HHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH--HHcCCC
Confidence            0 0001122334445555543  677788888889999999999999984  56643322222222222221  122333


Q ss_pred             CCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHHH-HHHHHHHHhhhhh----HHHHHHHHH
Q 020441          227 SGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCA-SIAVVFFIGPYIS----LQAMLIVMV  300 (326)
Q Consensus       227 ~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~-g~~i~~~i~~~~~----~~~~~~~~~  300 (326)
                      .+   +....++.+..|+.--.=|..+-....|..|++- .++-+.-.++..+ |++.+-..-.++.    ...-.+++.
T Consensus       344 ~~---~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~  420 (448)
T COG2271         344 GS---YLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLS  420 (448)
T ss_pred             cc---HHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHH
Confidence            21   2344555555666555445444445556666653 4455677777777 6555544444441    222233334


Q ss_pred             HHHHHHHHHHHHH
Q 020441          301 VGICVALVGILFL  313 (326)
Q Consensus       301 ~~~~~~~~~~~~~  313 (326)
                      +.++++.+.++.+
T Consensus       421 ~~a~l~~lll~~~  433 (448)
T COG2271         421 IAALLAILLLLPV  433 (448)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444454444443

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.16  E-value=1.9e-08  Score=94.27  Aligned_cols=251  Identities=12%  Similarity=0.094  Sum_probs=153.5

Q ss_pred             CchhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCch
Q 020441            1 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTT   80 (326)
Q Consensus         1 li~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~   80 (326)
                      |...|++.|++.|.+| +...|+...-|+          ++|++..|++.+...+|.++|++++-.+.       ..|||
T Consensus       118 L~i~R~llGvaEA~~~-A~~syI~~WfP~----------kER~ratsi~~sg~~vG~~Ia~~L~qll~-------s~gWr  179 (511)
T TIGR00806       118 MQLMEVFYSVTMAARI-AYSSYIFSLVPP----------SRYQRAAAYSRAAVLLGVFLSSVLGQLLV-------TLGWI  179 (511)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hcCch
Confidence            3578999999999999 999999999994          58999999999888999888888887632       13565


Q ss_pred             hh---HHHHHHHHHHHHHHHHHccCCccc----cc---------c-chhhhc----hh------hhhHHHHHHHHHHHhh
Q 020441           81 LL---FIVFLGVITLGTILMCFLRKEEDK----GE---------K-ETADAS----VN------FYSYLVSLSKSITTLL  133 (326)
Q Consensus        81 ~~---f~~~~~i~~l~~~l~~~l~~~~~~----~~---------~-~~~~~~----~~------~~~~~~~~~k~~~~~~  133 (326)
                      .+   ..+-++..+++.++++|||.+++.    ++         + ++.+.+    ..      ....+++..++..+..
T Consensus       180 ~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y  259 (511)
T TIGR00806       180 SYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIY  259 (511)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHh
Confidence            43   333345567778889999966541    00         0 000000    00      0011233344444455


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHH-hhccccc---ccccccchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHH
Q 020441          134 ADVRMLLIIPLFAYSGLQQAFVW-AEFTKEI---VTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGA  209 (326)
Q Consensus       134 ~~~~~lll~p~~~~~g~~~~f~~-~~~~~~~---~~~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~  209 (326)
                      +|++.+.-.  ..+.--..+|+- ..|.+.+   +.+... ++.|.+..+.-+..++.++..|.+..++.+.. .+.++.
T Consensus       260 ~n~~vl~WS--lWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~-~yNG~veA~~tllga~~a~~ag~~~~~w~~~~-~l~l~v  335 (511)
T TIGR00806       260 RNPQLLLWS--LWWVFNSAGYYLITYYVHTLWGTLDESLN-KYNGAVDAASTLLGAITSFIAGFVNIRWARWS-KLLIAV  335 (511)
T ss_pred             cCcchhhhh--HHHHHHhhHHHHHHHHHHHHHHHcCCCcc-ccCCHHHHHHHHHHHHHHHHHHhhcCCchhhH-HHHHHH
Confidence            666655422  232211111111 1111111   111111 26677888888888889999998865554321 222332


Q ss_pred             HHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHHH
Q 020441          210 IAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCA  278 (326)
Q Consensus       210 i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~  278 (326)
                      +..+...++.+..+.++     .+..++.+++++..+....+...+-+++...+++ +..|++..+.--+
T Consensus       336 ~s~~~~gll~~m~~t~~-----Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~  400 (511)
T TIGR00806       336 VSAIQAGLVFWMSQSHD-----IWVLYVTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATA  400 (511)
T ss_pred             HHHHHHHHhhhhhcccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHH
Confidence            22221222223456555     5889999999999999999999999999888776 6688876664433

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK11462 putative transporter; Provisional

Probab=99.14  E-value=4.2e-08  Score=93.72  Aligned_cols=226  Identities=11%  Similarity=0.026  Sum_probs=110.4

Q ss_pred             CcchhhhhHHHHHHHHHhHHHHHHHHHHHhc-CCCCCCCCCchhhHHHHHHHHHHHHHHHHHccCCccccccchhhhchh
Q 020441           39 GTVIGSFNGEFWGMFASHQFVGNLITLAVLK-DDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVN  117 (326)
Q Consensus        39 ~~~~g~~~gif~~~~~~~~iiG~li~~~~~~-~~~~~~~~~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~  117 (326)
                      +++|.+..++.....+.|..+++++..-+.. ..++....+|+....++.+++++...+.++..   +|+++++.     
T Consensus       141 ~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~---kE~~~~~~-----  212 (460)
T PRK11462        141 PTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTT---KERVEAPP-----  212 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcc---eeccCCCc-----
Confidence            5688888888777767776666666432222 11111124566555555444444433333322   22211100     


Q ss_pred             hhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHH---Hhhcccccccccccch-hhHHHHHHHHHHHHHHHhhhhh
Q 020441          118 FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFV---WAEFTKEIVTPALGVS-GVGGAMAVYGAFDAICSLAAGR  193 (326)
Q Consensus       118 ~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~---~~~~~~~~~~~~lg~~-~~~~~~~~~gi~~~i~~~~~G~  193 (326)
                      ++.+.++.+++   +++||..+.+....+.........   ..+|.+ |   .+|.. ..+.++.++++..+++.++.++
T Consensus       213 ~~~~~~~~l~~---~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~-y---~~g~~~~~~~~l~~~~i~~iig~~l~~~  285 (460)
T PRK11462        213 TTTSMREDLRD---IWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVT-W---ILGTPEVFVAFLTTYCVGNLIGSALAKP  285 (460)
T ss_pred             cCCCHHHHHHH---HhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhh-h---hcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12235555444   455765544432222221111111   112221 2   23322 3345567788888999999999


Q ss_pred             hccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhcc-------CCch
Q 020441          194 LTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFK-------HDTE  266 (326)
Q Consensus       194 l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~-------~~~~  266 (326)
                      +.||+++|+ ++..+........+..+ ..++++    ....++..+++|++.+..+....+++++.-+       ++++
T Consensus       286 l~~r~gkk~-~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~  359 (460)
T PRK11462        286 LTDWKCKVT-IFWWTNALLAVISLAMF-FVPMQA----SITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLT  359 (460)
T ss_pred             HHHHhChHH-HHHHHHHHHHHHHHHHH-HhchhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCch
Confidence            999999885 54433332222111111 122221    1234445566788877777766777776644       2223


Q ss_pred             h-hhhHHHHHHHHHHHHHHH
Q 020441          267 G-AFAQLKVWQCASIAVVFF  285 (326)
Q Consensus       267 ~-~fa~~~~~~~~g~~i~~~  285 (326)
                      . .++.+.+.+-+|.+++..
T Consensus       360 g~~~a~~~f~~Klg~alg~~  379 (460)
T PRK11462        360 GISFAGTLFVLKLGLAFGGA  379 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            2 345544445444444433

>TIGR00788 fbt folate/biopterin transporter

Probab=99.12  E-value=1.4e-08  Score=97.10  Aligned_cols=270  Identities=14%  Similarity=0.117  Sum_probs=163.9

Q ss_pred             hHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhhH
Q 020441            4 ASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLF   83 (326)
Q Consensus         4 a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~f   83 (326)
                      ...+.+++.+...++.-.+..|..+++        ++..+...+..|.....|.++|..++-.+...      .+|+..|
T Consensus       126 ~~~l~~~~~a~~dv~~da~~~e~~~~~--------~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~------~~~~~~f  191 (468)
T TIGR00788       126 FIFLAALAKALYDVLVDSLYSERIRES--------PSAGPSLVSWMWGASATGGLISSLLGGPLLDK------TLTRILF  191 (468)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhhhcC--------CCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh------cCcchHH
Confidence            346777788888787777777777621        22344566778888888999998888765432      2588778


Q ss_pred             HHHHHHHHHHHHHHHHccCCcc-ccccchhh-------hchhhhhHHHHHHHHHHHhhcchhhHH-HHHHHH-HHHHHHH
Q 020441           84 IVFLGVITLGTILMCFLRKEED-KGEKETAD-------ASVNFYSYLVSLSKSITTLLADVRMLL-IIPLFA-YSGLQQA  153 (326)
Q Consensus        84 ~~~~~i~~l~~~l~~~l~~~~~-~~~~~~~~-------~~~~~~~~~~~~~k~~~~~~~~~~~ll-l~p~~~-~~g~~~~  153 (326)
                      .+..++..+..+..++++++++ ++++.+++       .......+.++.+++..+.+++|+... +...++ +... .+
T Consensus       192 ~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~-~~  270 (468)
T TIGR00788       192 LITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANL-PG  270 (468)
T ss_pred             HHHHHHHHHHHHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhc-CC
Confidence            7665555555444566655421 11110000       001111234566677777787777654 222222 1110 00


Q ss_pred             HHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHH-h--cccCCCC
Q 020441          154 FVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL-I--NYSVTSG  228 (326)
Q Consensus       154 f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~-l--~~~~~~~  228 (326)
                      .....|  .+....+|.  +.+|.+....+++++++....+++.+|++.|+ ++..+.++......... +  .+.....
T Consensus       271 ~~~~~f--~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~-~l~~~~~l~~~~~~~~~~l~~~~~~~~g  347 (468)
T TIGR00788       271 ASGSVF--CATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRL-LFGVTTLLYTLSSLFDLILVKRWNLAFG  347 (468)
T ss_pred             CCceeE--EEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHH-HHHHHHHHHHHHHhCceeeeeccccccC
Confidence            000111  022234554  47889999999999999999999999999874 66666666554432111 1  1110000


Q ss_pred             CcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          229 VLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       229 ~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      ..+........++-+++.+........++.+..|++. .+.|+.+...+++|..++..++..+.
T Consensus       348 i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~  411 (468)
T TIGR00788       348 ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLM  411 (468)
T ss_pred             CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0011234455677788888888888999999999775 66899999999999999888776653

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.11  E-value=6.9e-09  Score=94.67  Aligned_cols=248  Identities=11%  Similarity=0.025  Sum_probs=136.8

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..++++|++.+- ....-.++.+.=|          |+++|...|++- .-++|..+-.+++..+.....   ...|+.
T Consensus       109 l~~gll~G~~Gas-Fav~m~~~s~~fP----------~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g---~~~w~~  173 (417)
T COG2223         109 LVIGLLLGLAGAS-FAVGMPNASFFFP----------KEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG---FLAWRN  173 (417)
T ss_pred             HHHHHHHhcccce-ehcccccccccCC----------hhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh---hHHHHH
Confidence            5678899988554 4445566777777          469999999986 556666555555544433210   002676


Q ss_pred             hHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHH--hhc
Q 020441           82 LFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVW--AEF  159 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~--~~~  159 (326)
                      .-.++....++..+.+.+.-+...|.+.+   .+  +..+  +++|.   +.++++.-.+.  .+|....-+|..  ..+
T Consensus       174 ~~~i~~~~l~v~~v~~~~~~~d~p~~r~~---~~--~~~~--~~~~~---v~~~~~~W~ls--llY~~tFG~Fvgfs~~l  241 (417)
T COG2223         174 VAGIYVVALAIAAVLAWLGMNDVPEHRAS---VK--PQLP--AQLKA---VFSNKDTWLLS--LLYFATFGGFVGFSAYL  241 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCChhhhcc---cc--ccch--hHHHH---HhcCcchHHHH--HHHHHHHHHHHHHHHHH
Confidence            66666666666555554432222221110   00  0011  23332   44566655443  344433333321  222


Q ss_pred             ccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCC-C-cchHHH
Q 020441          160 TKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSG-V-LGTLYP  235 (326)
Q Consensus       160 ~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~-~-~~~~~~  235 (326)
                      + +|..+..|.+  ..+....++.+...+..+.+|+++||+|+++ +........+++...  +.+.++.. . ......
T Consensus       242 ~-~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~r-v~~~~f~~~~~~~~~--l~~~~~~~~~~~~~~~~  317 (417)
T COG2223         242 P-MYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRR-VTLAVFVGMALAAAL--LSLFLTGFGHGGSFVVF  317 (417)
T ss_pred             H-HHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchh-HHHHHHHHHHHHHHH--HHccccccccCcchHHH
Confidence            2 3444444544  5567788888999999999999999999875 443333333322221  12222111 0 012344


Q ss_pred             HHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHH
Q 020441          236 LIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASI  280 (326)
Q Consensus       236 ~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~  280 (326)
                      +...+.++++.+.-|...+.++...||++...+-+.....-++|+
T Consensus       318 ~~~~l~l~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGG  362 (417)
T COG2223         318 VAVFLALFVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGG  362 (417)
T ss_pred             HHHHHHHHHHhccCcchheeechHHHHhhhhHHHHHHHHhccccc
Confidence            555667777788888888888888888765544444444445554

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.11  E-value=3.7e-08  Score=89.51  Aligned_cols=276  Identities=12%  Similarity=0.119  Sum_probs=165.1

Q ss_pred             hHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCC-----C--C---
Q 020441            4 ASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD-----K--G---   73 (326)
Q Consensus         4 a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~-----~--~---   73 (326)
                      +-.+.|.|.+.+-++.+.|++...++          ++-.+-..+..++..+|.++|+++...+...+     +  +   
T Consensus       110 ~lFila~Gi~~LetaaNp~v~~lg~~----------~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~  179 (422)
T COG0738         110 ALFILASGIGLLETAANPYVTLLGKP----------ESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILA  179 (422)
T ss_pred             HHHHHHhhhHHHHhccchHHHHhCCc----------hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHH
Confidence            44688999999999999999999984          45556667788888999999999976543311     0  0   


Q ss_pred             ---CCCCCchhhHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHH-HHHHHHHHH
Q 020441           74 ---GSTSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLL-IIPLFAYSG  149 (326)
Q Consensus        74 ---~~~~~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ll-l~p~~~~~g  149 (326)
                         -....++.+|..+...-.+-.+.....|.|+.++.+++. .+ .++..       ..+++++|+..+ ..-.++|.|
T Consensus       180 ~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~-~~-~~~~~-------~~~l~~~~~~~~gvl~~FlYVG  250 (422)
T COG0738         180 IKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSL-GA-SGSAG-------LSSLFQNKHLRLGVLAIFLYVG  250 (422)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccc-cc-cccch-------HHHHHhChHHHHHHHHHHHHHh
Confidence               011236677876654443334444555555444332211 11 11101       122556666544 334689999


Q ss_pred             HHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHH-HHHHHHHHHhcccCC
Q 020441          150 LQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIA-QVVVFLWILINYSVT  226 (326)
Q Consensus       150 ~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~-~~~~~~~~~l~~~~~  226 (326)
                      .+.+.+.  +..+|..+..|.  .+.......+..+.++|..++-++.+|+...+ .+.+-++. ..++...   ...++
T Consensus       251 ~Eva~gs--fl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k-~Laf~a~~~ill~~~~---~l~~g  324 (422)
T COG0738         251 AEVAIGS--FLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEK-YLAFYALIAILLLLAV---ALIGG  324 (422)
T ss_pred             HHHHHHH--HHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHH---HHhcC
Confidence            9987752  222344443443  46667777888888888877777777777665 33333322 2222221   22333


Q ss_pred             CCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 020441          227 SGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYISLQAMLIVMVVGICVA  306 (326)
Q Consensus       227 ~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~~~~~~~~~~~~~~~~  306 (326)
                            ...+...++.|+..+...++++++--+..|++.+ .-|..-..-.+|+++.+.+...+.-+....  .....+.
T Consensus       325 ------~v~~~~l~~ig~F~simfPTIfslal~~l~~~ts-~~s~~l~maivGGAiiP~l~G~i~d~~g~~--~~~~~~p  395 (422)
T COG0738         325 ------VVALYALFLIGLFNSIMFPTIFSLALKNLGEHTS-VGSGLLVMAIVGGAIIPPLQGVIADMFGIQ--LTFLIVP  395 (422)
T ss_pred             ------hHHHHHHHHHHHHhHHHHHHHHHHHHhccCcccc-ccceeeeeheecchHHHHHHHHHHHhhhhH--HHHHHHH
Confidence                  3445567778999999999999999888885443 223344445678888888887775332111  1112445


Q ss_pred             HHHHHHH
Q 020441          307 LVGILFL  313 (326)
Q Consensus       307 ~~~~~~~  313 (326)
                      ++||+++
T Consensus       396 llc~lyV  402 (422)
T COG0738         396 LLCYLYV  402 (422)
T ss_pred             HHHHHHH
Confidence            5555555

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.10  E-value=4.5e-14  Score=134.07  Aligned_cols=275  Identities=16%  Similarity=0.124  Sum_probs=137.9

Q ss_pred             CchhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCch
Q 020441            1 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTT   80 (326)
Q Consensus         1 li~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~   80 (326)
                      ++++|+++|++.|..++....|++|.+|          +++||+..++....+.+|..+|.+++.......+   ++.||
T Consensus       105 ~~~~R~~~G~~~g~~~~~~~~~~~E~~~----------~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~---~~~Wr  171 (451)
T PF00083_consen  105 LLIGRFLIGFGIGGAYVVSPIYISEIAP----------PKHRGFLSSLFQLFWALGILLASLIGYIVSYYSD---NWGWR  171 (451)
T ss_pred             cccccccccccccccccccccccccccc----------cccccccccccccccccccccccccccccccccc---ccccc
Confidence            3578999999999999999999999999          4688988887766666676666666655422221   46799


Q ss_pred             hhHHHHHHHHHHHHHHHHHccCCcc-----ccccc------h---hhhchhhhhHHHHHHH-------HHHHhhcchh--
Q 020441           81 LLFIVFLGVITLGTILMCFLRKEED-----KGEKE------T---ADASVNFYSYLVSLSK-------SITTLLADVR--  137 (326)
Q Consensus        81 ~~f~~~~~i~~l~~~l~~~l~~~~~-----~~~~~------~---~~~~~~~~~~~~~~~k-------~~~~~~~~~~--  137 (326)
                      ..+..-.+..++..+...++|+.++     .++++      +   .+.++.+..+.+++.+       +..+++++++  
T Consensus       172 ~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  251 (451)
T PF00083_consen  172 ILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYR  251 (451)
T ss_pred             ccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecccccccc
Confidence            7765443333333344455653211     00000      0   0000000000011111       1122333322  


Q ss_pred             --hHHHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHH
Q 020441          138 --MLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVV  215 (326)
Q Consensus       138 --~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~  215 (326)
                        .+....+.....+...+....|.+.+. +..+.+..-......++...++......+.||+|||+ +++.+......+
T Consensus       252 ~~~~~~~~l~~~~~~~g~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~-~~i~~~~~~~~~  329 (451)
T PF00083_consen  252 KRLLIALLLQFFQQFSGINFIFYYSPSIF-ENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRK-LLIIGLLLMAIC  329 (451)
T ss_pred             ccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence              222111111111111111122222221 1223222222334555566667777778899999995 666665554433


Q ss_pred             HHHHH--hcccCCCC-CcchHHHHHHHHHH-hhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          216 FLWIL--INYSVTSG-VLGTLYPLIMAALL-GIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       216 ~~~~~--l~~~~~~~-~~~~~~~~~~~~l~-G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .+.+.  ....++.+ +.+ ....+...++ ......+.+..+.+.+|+||.+ |..+.+.......+++.++..+.+.+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~-~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~  408 (451)
T PF00083_consen  330 SLILGIIFFLGVSSSSWWS-ILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYL  408 (451)
T ss_pred             ccccccccccccccccccc-cccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            32211  11111111 101 1112222222 2333356666678889999987 66677766666667777776666554


Q ss_pred             h
Q 020441          291 S  291 (326)
Q Consensus       291 ~  291 (326)
                      .
T Consensus       409 ~  409 (451)
T PF00083_consen  409 F  409 (451)
T ss_pred             c
Confidence            3

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=99.10  E-value=4.9e-11  Score=95.99  Aligned_cols=62  Identities=37%  Similarity=0.770  Sum_probs=57.6

Q ss_pred             CchhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCC
Q 020441            1 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK   72 (326)
Q Consensus         1 li~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~   72 (326)
                      ++|+++++|+|++++|++|+.|++++++          |++|+|++|++|+++++++++||++.+++++.++
T Consensus        92 l~~~s~l~G~~~a~lW~aqg~ylt~~s~----------~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~~~~  153 (156)
T PF05978_consen   92 LYPASALLGFGAALLWTAQGTYLTSYST----------EETIGRNTGIFWAIFQSSLIFGNLFLFFIFQGQT  153 (156)
T ss_pred             HHHHHHHHhhhhHHhhHhhhHHHHHcCC----------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            4799999999999999999999999999          4689999999999999999999999999987654

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.09  E-value=5.7e-09  Score=101.03  Aligned_cols=86  Identities=15%  Similarity=0.143  Sum_probs=63.0

Q ss_pred             CchhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCch
Q 020441            1 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTT   80 (326)
Q Consensus         1 li~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~   80 (326)
                      ++.+|+++|+|.|..-.....|++|.+|+          +.||...+.+......|..+|.++++..-..    . ++||
T Consensus       145 l~~GR~l~G~g~G~~~~~~piy~sEiap~----------~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~----~-~~Wr  209 (513)
T KOG0254|consen  145 LIVGRILTGLGVGGASVLAPVYISEIAPA----------HIRGTLVSLYQLFITIGILLGYCINYGTSKV----Y-AGWR  209 (513)
T ss_pred             HHHHHHHhccchhhhhhcchhhHhhcCCh----------hhhHHHHHHHHHHHHHHHHHHHHHhhhhccC----C-ccHH
Confidence            46799999999999999999999999994          5899888877666666666665444433211    1 6899


Q ss_pred             hhHHHHHHHHHHHHHHHHHcc
Q 020441           81 LLFIVFLGVITLGTILMCFLR  101 (326)
Q Consensus        81 ~~f~~~~~i~~l~~~l~~~l~  101 (326)
                      .++.+..+.+++..+..+++|
T Consensus       210 ~~~~~~~i~~~~~~~~~~~~p  230 (513)
T KOG0254|consen  210 IPLGLALIPAVILALGMLFLP  230 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHhCC
Confidence            888766555555555556665

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.08  E-value=9.1e-09  Score=98.82  Aligned_cols=284  Identities=16%  Similarity=0.142  Sum_probs=170.4

Q ss_pred             hhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhh
Q 020441            3 PASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLL   82 (326)
Q Consensus         3 ~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~   82 (326)
                      -.+++.|+|.|..+..+.+.+..+=+|           ||+...|+-.+...++.++=+.+...+...      -|||..
T Consensus       140 t~gvi~G~G~~~~~~paiviv~~YF~k-----------kR~lA~Gia~~GsG~G~~~~~~l~~~l~~~------~G~r~~  202 (509)
T KOG2504|consen  140 TFGVIGGLGLGLIYLPAVVILGTYFEK-----------KRALATGIAVSGTGVGTVVFPPLLKYLLSK------YGWRGA  202 (509)
T ss_pred             HHHHHhhccchhhhcchhhhhhhHhHH-----------HHHHHHhhhhccCCcceeeHHHHHHHHHHH------hCcHHH
Confidence            357889999999999998888877774           899999988766665543322232223222      368877


Q ss_pred             HHHHHHHHHHHHHHHHHccCCccc----------------------------cccch-h----------hhchhhhhHHH
Q 020441           83 FIVFLGVITLGTILMCFLRKEEDK----------------------------GEKET-A----------DASVNFYSYLV  123 (326)
Q Consensus        83 f~~~~~i~~l~~~l~~~l~~~~~~----------------------------~~~~~-~----------~~~~~~~~~~~  123 (326)
                      +.++..+.+-.++..+..|+...+                            +++.. .          +..+.+.....
T Consensus       203 ~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (509)
T KOG2504|consen  203 LLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSP  282 (509)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccc
Confidence            777776665555666666651110                            00000 0          00000001001


Q ss_pred             HHHHHH---HHhhcchhhHHHHH--HHHHHHHHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhcc
Q 020441          124 SLSKSI---TTLLADVRMLLIIP--LFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTT  196 (326)
Q Consensus       124 ~~~k~~---~~~~~~~~~lll~p--~~~~~g~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d  196 (326)
                      ++-...   +++++|+..+++..  .+.+.|+...++.   .+.+.. ..|.  ++....+.+.|++++++.++.|.+.|
T Consensus       283 ~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~---l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD  358 (509)
T KOG2504|consen  283 LQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVY---LPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLAD  358 (509)
T ss_pred             hhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHH---HHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcC
Confidence            111111   45778877665432  2333343333321   112222 3343  47788889999999999999999999


Q ss_pred             CCCChh-hHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhHHHH
Q 020441          197 GLPSIT-FIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKV  274 (326)
Q Consensus       197 ~~g~~~-~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~  274 (326)
                      +...++ .+..++.+...+...  ++....+     +.......+++|++.+.+....+.++.++.+.++ ..+++...+
T Consensus       359 ~~~~~~~~~~~~~ll~~gl~~~--~~p~~~~-----~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~  431 (509)
T KOG2504|consen  359 KPGIRALVLFLLTLLIAGLARL--FLPFATT-----YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLL  431 (509)
T ss_pred             ccccchHHHHHHHHHHHHHHHH--HHHHhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHH
Confidence            877432 233333333333221  1222222     3567888899999999999999999999998776 679999999


Q ss_pred             HHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHHHH
Q 020441          275 WQCASIAVVFFIGPYIS-----LQAMLIVMVVGICVALVGILFLT  314 (326)
Q Consensus       275 ~~~~g~~i~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  314 (326)
                      +++++..+++-+...+.     .....+..-...+++..+++...
T Consensus       432 ~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  432 FQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence            99999999998887663     11222333333445554554444

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.04  E-value=1.3e-08  Score=97.76  Aligned_cols=123  Identities=15%  Similarity=0.206  Sum_probs=89.4

Q ss_pred             ccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccC-CCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHH
Q 020441          162 EIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM  238 (326)
Q Consensus       162 ~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~-~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (326)
                      .|.++.+|.+  ....+...+.....+..+++|+++|| +|||+ .+..+.++..+..++..+.  ++.    +...++.
T Consensus        39 ~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~-~~~~g~~~~~~g~~~~~~~--~~~----~~ll~~~  111 (489)
T PRK10207         39 VFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR-TIVLGAIVLAIGYFMTGMS--LLK----PDLIFIA  111 (489)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHH-HHHHHHHHHHHHHHHHHHh--ccc----hhHHHHH
Confidence            3445556654  45566666776777788899999999 99996 7777777666554433322  221    1234455


Q ss_pred             HHHHhhhhHHhhhhhHhhHHhhccCC--c-hhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          239 AALLGIGDGVLNTQLSALLGILFKHD--T-EGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       239 ~~l~G~~d~~~~~~~~~il~~~f~~~--~-~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      .++.|++.+...+...+++++.||++  + +.+|+.+....++|+++++.+.+++.
T Consensus       112 ~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~  167 (489)
T PRK10207        112 LGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA  167 (489)
T ss_pred             HHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            66779999999999999999999865  2 44799999999999999988888775

>PRK09848 glucuronide transporter; Provisional

Probab=99.04  E-value=2.1e-07  Score=88.45  Aligned_cols=149  Identities=12%  Similarity=-0.021  Sum_probs=86.6

Q ss_pred             hhcchhhHHHHHHHHHHHHH-HHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHH
Q 020441          132 LLADVRMLLIIPLFAYSGLQ-QAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGG  208 (326)
Q Consensus       132 ~~~~~~~lll~p~~~~~g~~-~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g  208 (326)
                      +++||+........+..... ..+.  ...+-+.+..+|.+  ..++......++..++.++.+++.||+++|+ .+..+
T Consensus       224 l~~n~~f~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~-~~~~g  300 (448)
T PRK09848        224 LKRNRPLFMLCIGALCVLISTFAVS--ASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN-TFLIG  300 (448)
T ss_pred             HhCCchHHHHHHHHHHHHHHHHHHh--hhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-HHHHH
Confidence            66788876543222222111 1111  11222334445543  2233333335567788999999999999885 66667


Q ss_pred             HHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-------c-hhhhhHHHHHHHHHH
Q 020441          209 AIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-------T-EGAFAQLKVWQCASI  280 (326)
Q Consensus       209 ~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-------~-~~~fa~~~~~~~~g~  280 (326)
                      .++.....+...  +.++.+   .+..++..++.|++.+..++...++..+.-|.+       + ...++.+++.+-+|.
T Consensus       301 ~~~~~i~~~~~~--~~~~~~---~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~  375 (448)
T PRK09848        301 ALLGTCGYLLFF--WVSVWS---LPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQ  375 (448)
T ss_pred             HHHHHHHHHHHH--HcCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHH
Confidence            665554433222  222211   244455567789999999988888888876632       2 334668888888887


Q ss_pred             HHHHHHhh
Q 020441          281 AVVFFIGP  288 (326)
Q Consensus       281 ~i~~~i~~  288 (326)
                      +++..+..
T Consensus       376 aig~~i~g  383 (448)
T PRK09848        376 AIGGSIPA  383 (448)
T ss_pred             HHHHHHHH
Confidence            77766554

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.95  E-value=1.2e-06  Score=80.21  Aligned_cols=254  Identities=16%  Similarity=0.136  Sum_probs=149.5

Q ss_pred             HhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhhHHH
Q 020441            6 LYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIV   85 (326)
Q Consensus         6 ~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~f~~   85 (326)
                      ++.|+|.+.--++-.+.+++.++          |++|++..++.|.+.-.|.+++.++...++.+.++     -|. .-+
T Consensus        97 ~l~G~G~~~s~T~~lALl~D~~~----------e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~-----~rL-~~v  160 (403)
T PF03209_consen   97 LLYGLGVHASGTSFLALLADLAP----------EERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSP-----ERL-IQV  160 (403)
T ss_pred             HHHHhhHhHhHHHHHHHHHhcCC----------HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCH-----HHH-HHH
Confidence            45566666655655566666666          78999999999999999999999988777665331     121 111


Q ss_pred             HHHHHHHH---HHHHHHc-cCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhh-cc
Q 020441           86 FLGVITLG---TILMCFL-RKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAE-FT  160 (326)
Q Consensus        86 ~~~i~~l~---~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~-~~  160 (326)
                      +-....+.   .+++++= .++..+..    +.+++++.++++..++.   ..||+..... .++..+. .+|...+ .-
T Consensus       161 ~~~~a~i~~~l~~ia~wg~E~r~~~~~----~~~~~~~~~f~~a~~~~---~~~~~a~~f~-~fl~l~t-~a~~~QD~iL  231 (403)
T PF03209_consen  161 IQGVALIALLLNLIALWGQEPRRSRRA----AAAERPRPPFREAWRQV---WASPQARRFF-VFLFLGT-LAFFMQDVIL  231 (403)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCcccc----cCCCCCCccHHHHHHHH---HhCCChhHHH-HHHHHHH-HHHHhhHHHc
Confidence            11112222   2222321 11111111    11122344566665554   3566655443 2222222 2222221 11


Q ss_pred             cccccccccch--hhHHHHHHHHHHHHHHHhhhhhhcc-CCCChhhHHHHHHHHHHHHHHHHHhc-ccCCCCCcchHHHH
Q 020441          161 KEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTT-GLPSITFIVSGGAIAQVVVFLWILIN-YSVTSGVLGTLYPL  236 (326)
Q Consensus       161 ~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d-~~g~~~~i~~~g~i~~~~~~~~~~l~-~~~~~~~~~~~~~~  236 (326)
                      +-|..+.+|.+  ++.......+.+..++-...|++.. |.+++ ..-..|+...+.++.++.+. ...+     ++.+-
T Consensus       232 EPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~-~~a~~G~~~~~~~f~lii~a~~~~~-----~~~~~  305 (403)
T PF03209_consen  232 EPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK-RTAALGCLLGALAFALIILAGPLGS-----PWLFR  305 (403)
T ss_pred             CCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHhccc-----chHHH
Confidence            22555566654  6777788888888888888898765 45555 35556666655555432222 2222     25667


Q ss_pred             HHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          237 IMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       237 ~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ...+++|++.+.+..-.-+.+=++.+++ .....+.+...|+++.+++-+.+..+
T Consensus       306 ~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~  360 (403)
T PF03209_consen  306 PGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL  360 (403)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7788999999999876666655666544 45567799999988888888877544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.94  E-value=4.9e-07  Score=84.61  Aligned_cols=155  Identities=16%  Similarity=0.139  Sum_probs=104.2

Q ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHHHHhhccccccccccc---chhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhH
Q 020441          128 SITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG---VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFI  204 (326)
Q Consensus       128 ~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg---~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i  204 (326)
                      +.++++|||+.+...-..+..+...+.+++.++ .|.++ +|   .+..+..+.+..++|+..-...+|+.+|+|.++ +
T Consensus       199 ~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~-~yl~~-~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~-l  275 (400)
T PF03825_consen  199 DALKLLKNPRFLVFLLAAFLIGISHAAYYTFFS-IYLQE-LGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW-L  275 (400)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-H
Confidence            345688999987766556666666666554443 23332 33   235677778888899999999999999999885 7


Q ss_pred             HHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHH----HHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHH-HHHH
Q 020441          205 VSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM----AALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKV-WQCA  278 (326)
Q Consensus       205 ~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~-~~~~  278 (326)
                      +.++.+..++=+.+  ..+.++++    +....+    ..+-|+..+.........+.+..|++ +.++-+.|.. ..++
T Consensus       276 l~~a~~~~~vR~~l--~a~~~~~~----~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Gl  349 (400)
T PF03825_consen  276 LLLALVAYAVRWLL--YAYFSDPW----PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGL  349 (400)
T ss_pred             HHHHHHHHHHHHHH--HHHhcCCc----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhH
Confidence            77777665543322  22322221    222222    34689999999999999999999987 4667776654 4678


Q ss_pred             HHHHHHHHhhhhh
Q 020441          279 SIAVVFFIGPYIS  291 (326)
Q Consensus       279 g~~i~~~i~~~~~  291 (326)
                      |..++-.++.++-
T Consensus       350 g~~iG~~igG~l~  362 (400)
T PF03825_consen  350 GGAIGSLIGGWLY  362 (400)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888877663

>PRK10054 putative transporter; Provisional

Probab=98.94  E-value=4.4e-08  Score=91.69  Aligned_cols=121  Identities=16%  Similarity=0.101  Sum_probs=88.8

Q ss_pred             cccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHH
Q 020441          163 IVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAA  240 (326)
Q Consensus       163 ~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  240 (326)
                      +.++.+|.  .++++...++.+...+++++.|+++||+|||+ ++..+.+......+.  +.+.++     ++..++...
T Consensus        33 ~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~-~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~  104 (395)
T PRK10054         33 YLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKR-YMLLAITAFASGFIA--IPLVNN-----VTLVVLFFA  104 (395)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch-hHHHHHHHHHHHHHH--HHHHhH-----HHHHHHHHH
Confidence            34444565  47899999999999999999999999999985 666666555443322  223333     234444556


Q ss_pred             HHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          241 LLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       241 l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +.|.+.+...+...++..+.+|++ +..+++..+...++|.++++.+...+.
T Consensus       105 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~  156 (395)
T PRK10054        105 LINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV  156 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677777777788888999999866 567889999999999999998887663

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.93  E-value=9.5e-08  Score=92.21  Aligned_cols=151  Identities=19%  Similarity=0.277  Sum_probs=94.8

Q ss_pred             ccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccC-CCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHH
Q 020441          162 EIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM  238 (326)
Q Consensus       162 ~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~-~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (326)
                      .|.++.+|.+  ..+.....+........+++|++.|| +|||+ .+..+.++..+.....  ...++.    ....++.
T Consensus        46 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~-~~~~g~~~~~ig~~l~--~~~~~~----~~~l~~~  118 (500)
T PRK09584         46 VYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKR-VIMLGAIVLAIGYALV--AWSGHD----AGIVYMG  118 (500)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHHH--HHhccc----HHHHHHH
Confidence            4555566764  34444444444445556789999999 59985 6666766655443322  222221    1334455


Q ss_pred             HHHHhhhhHHhhhhhHhhHHhhccCCc---hhhhhHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHH
Q 020441          239 AALLGIGDGVLNTQLSALLGILFKHDT---EGAFAQLKVWQCASIAVVFFIGPYISL----QAMLIVMVVGICVALVGIL  311 (326)
Q Consensus       239 ~~l~G~~d~~~~~~~~~il~~~f~~~~---~~~fa~~~~~~~~g~~i~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~  311 (326)
                      .++.|++.+...+...+++++.||+++   ..+++.+....++|+.+++.+..++..    ....++..+..+++.+.+.
T Consensus       119 ~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~  198 (500)
T PRK09584        119 MATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFA  198 (500)
T ss_pred             HHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Confidence            567899999888888999999998642   347888899999999999999887742    2222333333345555555


Q ss_pred             HHHHHHhh
Q 020441          312 FLTIQVEK  319 (326)
Q Consensus       312 ~~~~~~~~  319 (326)
                      ...+..++
T Consensus       199 ~~~~~~~~  206 (500)
T PRK09584        199 FCQRWVKQ  206 (500)
T ss_pred             HhHHHhcc
Confidence            54444443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.93  E-value=8e-08  Score=91.79  Aligned_cols=148  Identities=17%  Similarity=0.186  Sum_probs=95.8

Q ss_pred             ccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCC-CChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHH
Q 020441          162 EIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGL-PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM  238 (326)
Q Consensus       162 ~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~-g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (326)
                      .|.++.+|.+  +.+.++..+.....++.+++|+++||+ |||+ .+..+.++.....+.  +...++.    +...++.
T Consensus        34 ~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr-~iliG~il~~lg~ll--l~~~~~~----~~~~~l~  106 (493)
T PRK15462         34 LYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM-AVMLGALLMAIGHVV--LGASEIH----PSFLYLS  106 (493)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH-HHHHHHHHHHHHHHH--HHHhhcc----hhHHHHH
Confidence            3444445554  677778888888889999999999999 9985 667777666544322  2222211    1223333


Q ss_pred             HHHHhhhhHHhhhhhHhhHHhhccCC---chhhhhHHHHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHH
Q 020441          239 AALLGIGDGVLNTQLSALLGILFKHD---TEGAFAQLKVWQCASIAVVFFIGPYISL----QAMLIVMVVGICVALVGIL  311 (326)
Q Consensus       239 ~~l~G~~d~~~~~~~~~il~~~f~~~---~~~~fa~~~~~~~~g~~i~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~  311 (326)
                      ..+.+++.+...+..++++++.||++   |+.+|+.+.....+|+.+++.+.+.+..    +....+..+..+++.+.+.
T Consensus       107 l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~  186 (493)
T PRK15462        107 LAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFL  186 (493)
T ss_pred             HHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHH
Confidence            44555667777788889999999863   5678997777777999999999987742    2222232333455555554


Q ss_pred             HHHHH
Q 020441          312 FLTIQ  316 (326)
Q Consensus       312 ~~~~~  316 (326)
                      ...++
T Consensus       187 ~~~~~  191 (493)
T PRK15462        187 CGNRH  191 (493)
T ss_pred             Hhhhh
Confidence            43333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.92  E-value=3e-08  Score=90.35  Aligned_cols=136  Identities=20%  Similarity=0.243  Sum_probs=100.8

Q ss_pred             cccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHH
Q 020441          165 TPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALL  242 (326)
Q Consensus       165 ~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~  242 (326)
                      .+.+|.  .+++++..++.+...+++++.|++.||+|||+ ++..+.++.........  +.++     .+..++..++.
T Consensus        24 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~l~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~l~   95 (352)
T PF07690_consen   24 AEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR-VLIIGLLLFALGSLLLA--FASN-----FWLLLIARFLL   95 (352)
T ss_dssp             HCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH-HHHHHHHHHHHHHHHHH--HHCC-----HHHHHHHHHHH
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee-eEeehhhhhhhHHHHhh--hhhh-----HHHHhhhcccc
Confidence            344554  47888899999999999999999999999996 77777776665522211  2233     24667788999


Q ss_pred             hhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHH
Q 020441          243 GIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS----LQAMLIVMVVGICVALV  308 (326)
Q Consensus       243 G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~----~~~~~~~~~~~~~~~~~  308 (326)
                      |++.+...+...+++.+.+|++ +..+++..+...++|..+++.+...+.    .....++..++.+++.+
T Consensus        96 g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i  166 (352)
T PF07690_consen   96 GIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI  166 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence            9999999999999999999984 677899999999999999999987664    22233444444444443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.92  E-value=1.3e-07  Score=86.56  Aligned_cols=142  Identities=18%  Similarity=0.183  Sum_probs=100.8

Q ss_pred             cccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhh
Q 020441          167 ALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  244 (326)
Q Consensus       167 ~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~  244 (326)
                      .+|.+  +.....+...+..+.|+++.|+|.||+|.|+ ++..+.+......+..+ ...++      ...+++..+.|+
T Consensus       282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~-vl~~~lvi~~~~~~~~~-~~~~~------~~f~i~gll~g~  353 (438)
T COG2270         282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKP-VLMIGLVILSIAALYLI-FLEGE------LDFWILGLLVGT  353 (438)
T ss_pred             HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-eehHHHHHHHHHHHHHH-Hcccc------HHHHHHHHHHHH
Confidence            45554  5566667778888999999999999999884 66666555443332222 22222      346777889999


Q ss_pred             hhHHhhhhhHhhHHhhccCCch-hhhhHHHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 020441          245 GDGVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIGPYIS-----LQAMLIVMVVGICVALVGILFLTIQ  316 (326)
Q Consensus       245 ~d~~~~~~~~~il~~~f~~~~~-~~fa~~~~~~~~g~~i~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  316 (326)
                      ..+..|..--++++++.|++++ .-|+.|++..=.++..+++.-..++     ...-...+.+++.++.+.+..+..+
T Consensus       354 s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         354 SLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             hcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            9999999999999999998874 4799999999888888888876664     2233344555566676666555433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.91  E-value=9.2e-07  Score=84.25  Aligned_cols=269  Identities=13%  Similarity=0.060  Sum_probs=135.8

Q ss_pred             hhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcC-------CCCCC--CCCchh
Q 020441           11 AASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD-------DKGGS--TSGTTL   81 (326)
Q Consensus        11 ~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~-------~~~~~--~~~~~~   81 (326)
                      +.........+++.|..|++        ++++++..+++....++|.++|++++......       .++..  ..+.|.
T Consensus       127 ~~n~~~~p~rALiaDl~p~~--------~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (477)
T TIGR01301       127 ANNMLQGPCRAFLADLTGGD--------ARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKS  198 (477)
T ss_pred             HHHHHHHHHHHhcccccCch--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHH
Confidence            44444444555666666642        22346788888777799999999988754210       01000  123455


Q ss_pred             hHHHHHHHHHHHHHHH-HHccCCccccccch--hhhchhhhhHHHHHHHHHHHhhcc-h---hhHHHHHHHHHHHHHHH-
Q 020441           82 LFIVFLGVITLGTILM-CFLRKEEDKGEKET--ADASVNFYSYLVSLSKSITTLLAD-V---RMLLIIPLFAYSGLQQA-  153 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~-~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~k~~~~~~~~-~---~~lll~p~~~~~g~~~~-  153 (326)
                      .|.+-.++.++...+. +++++.+..++++.  +|.++.++.+..+.++++++.+++ |   +.+++.-++-..|+.-- 
T Consensus       199 ~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~  278 (477)
T TIGR01301       199 CFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFI  278 (477)
T ss_pred             HHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Confidence            6655433333333333 23333211111110  000000011111223344444433 2   33444444444443311 


Q ss_pred             HHHhhc-cccccc-----ccc---cchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHH-hcc
Q 020441          154 FVWAEF-TKEIVT-----PAL---GVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL-INY  223 (326)
Q Consensus       154 f~~~~~-~~~~~~-----~~l---g~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~-l~~  223 (326)
                      ++.+.+ .+.+..     ...   |+..-.+.++++++...+.+.+.-++.+|+|+|+.++..+.++...++...+ +..
T Consensus       279 ~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~  358 (477)
T TIGR01301       279 LFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTY  358 (477)
T ss_pred             HhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence            111211 111110     001   1112345667788887888888888999998533466666555444443222 221


Q ss_pred             -c----C-CC------CCcc-hHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-c--hhhhhHHHHHHHHHHHHHHHHh
Q 020441          224 -S----V-TS------GVLG-TLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-T--EGAFAQLKVWQCASIAVVFFIG  287 (326)
Q Consensus       224 -~----~-~~------~~~~-~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~--~~~fa~~~~~~~~g~~i~~~i~  287 (326)
                       +    + +.      +..+ -+..+++..+.|+..+..++.-|+++++.-|++ +  ..-.+++|+...+...+.-...
T Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~  438 (477)
T TIGR01301       359 VAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGS  438 (477)
T ss_pred             hhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence             1    1 00      0001 144677888999999999999999999998843 2  3456688888777666655433

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.89  E-value=5.5e-07  Score=84.55  Aligned_cols=259  Identities=14%  Similarity=0.060  Sum_probs=128.0

Q ss_pred             HhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHH-HHHhcCCCCCCCCCchhhHH
Q 020441            6 LYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLIT-LAVLKDDKGGSTSGTTLLFI   84 (326)
Q Consensus         6 ~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~-~~~~~~~~~~~~~~~~~~f~   84 (326)
                      .+.|++.+...+-.++...|..++         +++|.+..++-....+.+..+=..+. .++....++-...|++..-.
T Consensus       120 ~l~~l~YT~vniPy~al~~~iT~d---------~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~  190 (467)
T COG2211         120 MLLGLGYTLVNIPYGALGPEITQD---------PQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTAL  190 (467)
T ss_pred             HHHHHHHHheeCchhhcchhhcCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence            345555555555555566666554         45677766655444444422222111 12211111111346665444


Q ss_pred             HHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 020441           85 VFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIV  164 (326)
Q Consensus        85 ~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~  164 (326)
                      ++.+++++..+.+++-   .+|+..+.++.+...+.++++.++.   +++||..+++.-+.+..........+.+. -|.
T Consensus       191 ~~~vi~~i~~l~~~~~---v~ER~~~~~~~~~~~~~~~~~~~~~---~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~-yy~  263 (467)
T COG2211         191 VLGVIGVILLLFCFFN---VKERVVETQPTKTGVKLKLKDSFLL---IFKNRPLLLLLLMNLLLFIAFNIRGSIMV-YYV  263 (467)
T ss_pred             HHHHHHHHHHHHHHHH---hhcccCccccCcccccccHHHHHHH---HHccchHHHHHHHHHHHHHHHHHHhhhhh-eeE
Confidence            4444444443333332   2222111111111122334333222   55676665544333333322221111110 123


Q ss_pred             cccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHH
Q 020441          165 TPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALL  242 (326)
Q Consensus       165 ~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~  242 (326)
                      +..+|-.  ...+.....+....++.++..++.+|+|+|+ ++..+.++.++.....++ .+++.    ....++..++.
T Consensus       264 ~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~-~~~~~~~~~~i~~~~~~f-~~~~~----~~l~~~~~~i~  337 (467)
T COG2211         264 TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKK-LFLIGLLLLAVGYLLLYF-TPAGS----VVLIVVALIIA  337 (467)
T ss_pred             EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHH-HHHHHHHHHHHHHHHHHh-hcCcc----hHHHHHHHHHH
Confidence            3345533  3445566677777777899999999999996 888887776655543332 22221    24456666888


Q ss_pred             hhhhHHhhhhhHhhHHhhcc------CCc-h-hhhhHHHHHHHHHHHHHHHH
Q 020441          243 GIGDGVLNTQLSALLGILFK------HDT-E-GAFAQLKVWQCASIAVVFFI  286 (326)
Q Consensus       243 G~~d~~~~~~~~~il~~~f~------~~~-~-~~fa~~~~~~~~g~~i~~~i  286 (326)
                      +++.+..++..-+++++.-+      ..| + ..||...+.+=+|.+++-++
T Consensus       338 ~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~  389 (467)
T COG2211         338 GVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFI  389 (467)
T ss_pred             HHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence            89999888888888776643      122 2 24555555554444444433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.88  E-value=8.7e-08  Score=91.89  Aligned_cols=116  Identities=14%  Similarity=0.185  Sum_probs=89.9

Q ss_pred             ccch--hhHHHHHHHHHHHHHHHhhhhhhccC-CCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhh
Q 020441          168 LGVS--GVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  244 (326)
Q Consensus       168 lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~-~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~  244 (326)
                      +|.+  +.+.+...+.+...++++++|+++|| +|||+ .+..+.++.......  +...++     +...++..++.|+
T Consensus        43 lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~-~l~~~~~~~~~g~~~--~~~~~~-----~~~~~~~~~l~g~  114 (475)
T TIGR00924        43 LGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKK-TMVLGGIVLMLGHFM--LAMSIY-----PDLIFYGLGTIAV  114 (475)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHH-HHHHHHHHHHHHHHH--HHhccc-----HhHHHHHHHHHHh
Confidence            5543  78888999999999999999999999 79995 777777666654432  223333     2344555667899


Q ss_pred             hhHHhhhhhHhhHHhhccCC----chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          245 GDGVLNTQLSALLGILFKHD----TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       245 ~d~~~~~~~~~il~~~f~~~----~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +.+...+...+++++.+|++    ++.+++.+....++|+.+++.+.+++.
T Consensus       115 g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~  165 (475)
T TIGR00924       115 GSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA  165 (475)
T ss_pred             ccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999853    455899999999999999999988764

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.86  E-value=6.4e-07  Score=83.16  Aligned_cols=156  Identities=11%  Similarity=0.119  Sum_probs=99.9

Q ss_pred             HHHHHHhhcchhhHHHHHHHHHHHHH---HHH---HHhhcccccccccccchhhHHHHHHHHHHHHHHHhhhhhhccCCC
Q 020441          126 SKSITTLLADVRMLLIIPLFAYSGLQ---QAF---VWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLP  199 (326)
Q Consensus       126 ~k~~~~~~~~~~~lll~p~~~~~g~~---~~f---~~~~~~~~~~~~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g  199 (326)
                      +|+..+++|+|+...+..  +..|..   ..|   +..++..-+.+...|.+..|+...+.-+.|++.-.+..++.+|+|
T Consensus       210 ~~~~~~l~k~~~fw~~~l--~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig  287 (412)
T PF01306_consen  210 LKDVLSLFKMRNFWFFVL--FVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIG  287 (412)
T ss_dssp             HHHHHHHTTSHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHhcchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            366778999999876552  233322   111   112222222233445556788888888889999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhh-HHHHHHH
Q 020441          200 SITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFA-QLKVWQC  277 (326)
Q Consensus       200 ~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa-~~~~~~~  277 (326)
                      .|+.+++.+.+... =++  ...+.++     ++...+.-.+-|+-........--.+.+.+|++. ++.+. .+++..+
T Consensus       288 ~k~~Lllag~i~~i-Ri~--~~~~~~~-----~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~  359 (412)
T PF01306_consen  288 AKNLLLLAGVIMAI-RII--GSGFATN-----PWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQ  359 (412)
T ss_dssp             HHHHHHHHHHHHHH-HHH--HHHT--S-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHH
T ss_pred             hHhHHHHHHHHHHH-HHH--HHhhhcc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHH
Confidence            99734433333322 221  1244454     4667777888898888888888889999999885 56777 5678888


Q ss_pred             HHHHHHHHHhhhhh
Q 020441          278 ASIAVVFFIGPYIS  291 (326)
Q Consensus       278 ~g~~i~~~i~~~~~  291 (326)
                      +|..+.......+.
T Consensus       360 ~~~~i~s~~~G~ly  373 (412)
T PF01306_consen  360 IGIIILSPLAGYLY  373 (412)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHhhH
Confidence            88887766666553

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.85  E-value=1.9e-07  Score=87.62  Aligned_cols=119  Identities=15%  Similarity=0.218  Sum_probs=92.4

Q ss_pred             cccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHH
Q 020441          165 TPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALL  242 (326)
Q Consensus       165 ~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~  242 (326)
                      .+.+|.  ..+|+...+..+...+.+++.|+++||+|||+ ++..+.++.....+..  .+.++     ++..++..++.
T Consensus        38 ~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~-~l~~~~~~~~~~~~~~--~~~~~-----~~~l~~~~~l~  109 (400)
T PRK11646         38 VDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKP-MIVTGMLMRAAGFATM--AIAHE-----PWLLWLSCILS  109 (400)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchH-HHHHHHHHHHHHHHHH--HHhcc-----HHHHHHHHHHH
Confidence            344554  37888888889999999999999999999985 7666666655544332  22333     35567778888


Q ss_pred             hhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          243 GIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       243 G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      |++.+..++...+++.+.+|++ +..+++.++...++|..+++.+...+.
T Consensus       110 g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~  159 (400)
T PRK11646        110 GLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL  159 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888888899999999765 577899999999999999999887664

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.84  E-value=1.4e-07  Score=88.10  Aligned_cols=144  Identities=19%  Similarity=0.063  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHH-Hh
Q 020441          145 FAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI-LI  221 (326)
Q Consensus       145 ~~~~g~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~-~l  221 (326)
                      .+..+...+.....++. +..+.+|.  .+++++..++.+...+++++.|++.||+|||+ ++..+.+......+.. +.
T Consensus        24 ~~~~~~~~~~~~~~l~~-~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~-~l~~~~~~~~~~~~~~~~~  101 (399)
T PRK05122         24 TFISYLTIGLPLAVLPG-YVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKK-AVVFGLCGCALSGLLYLLA  101 (399)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcc-hHHHHHHHHHHHHHHHHHh
Confidence            33344444443333332 33444554  47899999999999999999999999999996 6666655443322111 11


Q ss_pred             cccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          222 NYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .+.++.+..+....++..++.|++++...+....++.+.+|++ +..+.+.+......|..++..+...+
T Consensus       102 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l  171 (399)
T PRK05122        102 GLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL  171 (399)
T ss_pred             hhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence            1222111111234566778999999999888888888888765 56677777788888877777776654

>PRK12382 putative transporter; Provisional

Probab=98.80  E-value=3e-07  Score=85.72  Aligned_cols=127  Identities=18%  Similarity=0.075  Sum_probs=88.4

Q ss_pred             ccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHH-HHhcccCCCCCcchHHHHHHHH
Q 020441          164 VTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLW-ILINYSVTSGVLGTLYPLIMAA  240 (326)
Q Consensus       164 ~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~  240 (326)
                      ..+.+|.  .+++++...+.+...+++++.|++.||+|||+ ++..+.+......+. ......+.....++...++..+
T Consensus        42 l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  120 (392)
T PRK12382         42 VHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKR-SALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRL  120 (392)
T ss_pred             HHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchH-HHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence            3445565  48899999999999999999999999999996 666665543332211 1111111110001344667778


Q ss_pred             HHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          241 LLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       241 l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +.|++++...+...++..+.+|++ +..+++.+....+.|..+++.+...+.
T Consensus       121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~  172 (392)
T PRK12382        121 ILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH  172 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988888888888888755 566888888888888888888876553

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.79  E-value=4.4e-07  Score=82.98  Aligned_cols=117  Identities=15%  Similarity=0.078  Sum_probs=88.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHH-HhcccCCCCCcchHHHHHHHHHHhhhhHHh
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI-LINYSVTSGVLGTLYPLIMAALLGIGDGVL  249 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~  249 (326)
                      .+++++..++.++..+++++.|++.||+|||+ ++..+.++........ +....++.   +++..++..++.|++.+..
T Consensus        34 ~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~  109 (365)
T TIGR00900        34 SVLSLAALAGMLPYVVLSPIAGALADRYDRKK-VMIGADLIRAVLVAVLPFVALLGGL---NIWQVYVLAGILAIAQAFF  109 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHhhchhH-HHHHHHHHHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHHHHHH
Confidence            47788899999999999999999999999996 6665555444332221 11211211   1356677788899999999


Q ss_pred             hhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          250 NTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       250 ~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      .+..++++.+.+|++ +..+++.++....+|..+++.+...+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  152 (365)
T TIGR00900       110 TPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMY  152 (365)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999866 466888999999999999988887663

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.75  E-value=8.4e-07  Score=83.00  Aligned_cols=117  Identities=16%  Similarity=0.134  Sum_probs=91.2

Q ss_pred             cccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhh
Q 020441          167 ALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  244 (326)
Q Consensus       167 ~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~  244 (326)
                      .+|.  +++++....+.+...+++++.|++.||+|||+ ++..+.++.....+..  ...++     ++..++..++.|+
T Consensus        49 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~-~~~~~~~~~~~~~~~~--~~~~~-----~~~l~~~r~l~G~  120 (394)
T PRK10213         49 DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRY-VVILFAVLLTLSCLLV--SFANS-----FSLLLIGRACLGL  120 (394)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH-HHHHHHHHHHHHHHHH--HHHCh-----HHHHHHHHHHHHH
Confidence            4554  36788888899999999999999999999995 7777766665544322  22333     3667777889999


Q ss_pred             hhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          245 GDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       245 ~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +.+...+...+++.+.+|++ +..+.+......++|..+++.+.+.+.
T Consensus       121 ~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~  168 (394)
T PRK10213        121 ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLG  168 (394)
T ss_pred             hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999866 466888888888888888888887664

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.75  E-value=4.1e-07  Score=85.63  Aligned_cols=118  Identities=15%  Similarity=0.172  Sum_probs=91.4

Q ss_pred             cccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHH
Q 020441          165 TPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALL  242 (326)
Q Consensus       165 ~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~  242 (326)
                      .+.+|.  .+.+++..++.++..+++++.|++.||+|||+ ++..+.++..+.....  .+.++     +...++.-++.
T Consensus        35 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~-~~~~~~~~~~~~~~~~--~~~~~-----~~~l~~~r~l~  106 (412)
T TIGR02332        35 GKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR-WIAGIMVLWGIASTAT--MFATG-----PESLYLLRILV  106 (412)
T ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH-HHHHHHHHHHHHHHHH--HHhcC-----HHHHHHHHHHH
Confidence            344554  37888999999999999999999999999995 6666665555443322  23333     25567778899


Q ss_pred             hhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          243 GIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       243 G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      |++.+...+....++.+.+|++ +..+.+.++...++|..+++.++..+
T Consensus       107 G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l  155 (412)
T TIGR02332       107 GIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYI  155 (412)
T ss_pred             HHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888888999999965 67788899999999999998887654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.74  E-value=6.3e-07  Score=82.86  Aligned_cols=118  Identities=18%  Similarity=0.106  Sum_probs=90.4

Q ss_pred             ccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHh
Q 020441          166 PALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG  243 (326)
Q Consensus       166 ~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G  243 (326)
                      +.+|.  ++++++...+.++..+++++.|++.||+|||+ .+..+.++.....+..  ...++     ++..++..++.|
T Consensus        33 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~-~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~l~g  104 (385)
T TIGR00710        33 ADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRP-VLLLGLFIFALSSLGL--ALSNN-----IETLLVLRFVQA  104 (385)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH-HHHHHHHHHHHHHHHH--HHHcc-----HHHHHHHHHHHH
Confidence            34554  37888899999999999999999999999995 6666655544443322  22233     355667788999


Q ss_pred             hhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          244 IGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       244 ~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      ++.+...+..++++.+.+|++ +..+++..+....+|..+++.+...+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  153 (385)
T TIGR00710       105 FGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL  153 (385)
T ss_pred             cchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999866 466888888888988888888877653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.73  E-value=1.3e-07  Score=82.22  Aligned_cols=118  Identities=19%  Similarity=0.264  Sum_probs=77.5

Q ss_pred             ccccccccch--hhHHH-HHHHHHHHHHHHhhhhhhccCCCChhhHHHHHH-HHHHHHHHHHHhcccCCCCCcchHHHHH
Q 020441          162 EIVTPALGVS--GVGGA-MAVYGAFDAICSLAAGRLTTGLPSITFIVSGGA-IAQVVVFLWILINYSVTSGVLGTLYPLI  237 (326)
Q Consensus       162 ~~~~~~lg~~--~~~~~-~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~-i~~~~~~~~~~l~~~~~~~~~~~~~~~~  237 (326)
                      ++.++-.|.+  ..+-+ ..++++ ....+|++|.++||.|++. .++..+ +..+..--.  +.++.       +-++.
T Consensus       289 ~fF~~rfGlS~~~a~~i~s~vy~I-sav~spvfg~i~Dk~G~n~-~wv~~a~~~tl~~H~~--l~Ft~-------lsPy~  357 (459)
T KOG4686|consen  289 MFFQKRFGLSAVSAGNILSTVYGI-SAVLSPVFGAISDKYGFNL-WWVASACILTLLGHSG--LFFTF-------LSPYT  357 (459)
T ss_pred             HHHHHhhCCChhhccchhhhhhhh-hhhhhhhHHHhHhhhccee-hhHHHHHHHHHHHhhh--HHhhh-------ccHHH
Confidence            4444445554  22333 345554 4667899999999999873 443332 221111111  11211       22366


Q ss_pred             HHHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          238 MAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       238 ~~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ...++|+.++...-.....++.+.||++ .++|+.-+.+|.+|-++.+.+...+
T Consensus       358 ~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i  411 (459)
T KOG4686|consen  358 SMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI  411 (459)
T ss_pred             HHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence            7778899999887767777788889876 8899999999999999999998766

>PRK03545 putative arabinose transporter; Provisional

Probab=98.72  E-value=8.7e-07  Score=82.60  Aligned_cols=117  Identities=14%  Similarity=0.113  Sum_probs=89.5

Q ss_pred             ccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHh
Q 020441          166 PALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG  243 (326)
Q Consensus       166 ~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G  243 (326)
                      +.+|.  +++++....+.++..+++++.|++.||+|||+ ++..+.++.....+..  .+.++     ++..++..++.|
T Consensus        37 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~--~~~~~-----~~~l~~~r~~~G  108 (390)
T PRK03545         37 QSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRK-LLIGLFVLFIASHVLS--ALAWN-----FTVLLISRIGIA  108 (390)
T ss_pred             hHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH-HHHHHHHHHHHHHHHH--HHhcc-----HHHHHHHHHHHH
Confidence            34554  47888888999999999999999999999996 7666665544443221  22333     355667778889


Q ss_pred             hhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          244 IGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       244 ~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ++.+...+...+++.+.+|++ +..+++.++...++|..+++.+...+
T Consensus       109 ~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l  156 (390)
T PRK03545        109 FAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVI  156 (390)
T ss_pred             HHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence            999988888899999999865 56688899999999999988887655

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.71  E-value=2.5e-07  Score=84.96  Aligned_cols=113  Identities=12%  Similarity=-0.025  Sum_probs=84.0

Q ss_pred             ccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHh
Q 020441          166 PALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG  243 (326)
Q Consensus       166 ~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G  243 (326)
                      +.+|.  +++++...++.++..+++++.|++.||+|||+ ++..+.++.....+.  ....++     ++..++..++.|
T Consensus        31 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~-~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~g  102 (377)
T TIGR00890        31 RYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRA-VAMLGGILYGLGFTF--YAIADS-----LAALYLTYGLAS  102 (377)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccc-hhHHhHHHHHHHHHH--HHHHHH-----HHHHHHHHHHHh
Confidence            34554  47889999999999999999999999999995 666666555544332  122333     345566677889


Q ss_pred             hhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHH
Q 020441          244 IGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFI  286 (326)
Q Consensus       244 ~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i  286 (326)
                      ++.+...+.....+.+.+|+++..+.+.+....++|..++..+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  145 (377)
T TIGR00890       103 AGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGSFILSPL  145 (377)
T ss_pred             HHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhHhHHHHH
Confidence            9999887777788888899888778888888888887664433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.71  E-value=3.9e-07  Score=85.20  Aligned_cols=113  Identities=16%  Similarity=0.055  Sum_probs=89.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhh
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN  250 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~  250 (326)
                      +++++....+.++..+++++.|++.||+|||+ ++..+..+.....+.  ..+.|+     +...++..++.|++.+..+
T Consensus        44 ~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~-~l~~~~~l~~~~~~~--~~~a~~-----~~~ll~~r~l~Gig~~~~~  115 (393)
T PRK09705         44 SVAALLTALPVVTMGGLALAGSWLHQHVSERR-SVAISLLLIAVGALM--RELYPQ-----SALLLSSALLGGVGIGIIQ  115 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHhCchH-HHHHHHHHHHHHHHH--HHHCcc-----hHHHHHHHHHHHhHHHHHh
Confidence            37788888999999999999999999999995 777777666655432  234444     3456677889999999999


Q ss_pred             hhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          251 TQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       251 ~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +..+.++.+.+|+++..+.+.+......|..++..+.+.+.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~~~l~  156 (393)
T PRK09705        116 AVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLV  156 (393)
T ss_pred             hhhhHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999977777888888888888888888777653

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.71  E-value=1e-08  Score=94.55  Aligned_cols=253  Identities=13%  Similarity=0.056  Sum_probs=131.8

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      ...|.+.|+|.+..-+..-+.+.+..+          +++|++.+++|+..-..|..+|.+++..+-....     .||.
T Consensus       125 ~l~R~~vGiGeAs~~~ia~s~IaD~f~----------~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~Wr~  189 (493)
T KOG1330|consen  125 LLCRGFVGIGEASYSPIAPSLIADSFP----------DDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WWRW  189 (493)
T ss_pred             HHHHHHhccchhhhcccchhHhhhcCc----------chhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ceEE
Confidence            468999999999999999999999998          5799999999998888888888777766543221     1777


Q ss_pred             hHHHHHHHHHHHH-HHHHHccCCcc-ccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHH-HHHHHHHHHH--HH
Q 020441           82 LFIVFLGVITLGT-ILMCFLRKEED-KGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPL-FAYSGLQQAF--VW  156 (326)
Q Consensus        82 ~f~~~~~i~~l~~-~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~-~~~~g~~~~f--~~  156 (326)
                      -|..-.+++++.. ++.+++|.|++ +.++.+.+.+.  .++.....|+++.+.++|...+-... ..+.+..-++  +.
T Consensus       190 af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~--~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~  267 (493)
T KOG1330|consen  190 AFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM--VKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWA  267 (493)
T ss_pred             EEEeehHHHHHHHHHHHhhccCcccccccccccCCcC--CCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhh
Confidence            7766655565443 44567777765 22221111110  11222233445555565544332211 2222322222  11


Q ss_pred             hhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCC----CChhhHH------HHHHHHHHHHHHHHHhccc
Q 020441          157 AEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGL----PSITFIV------SGGAIAQVVVFLWILINYS  224 (326)
Q Consensus       157 ~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~----g~~~~i~------~~g~i~~~~~~~~~~l~~~  224 (326)
                      ..+.. +.....|.  +...+...+...+..+|..++|.++||+    ++-....      ..++...+.. +++....+
T Consensus       268 p~~~~-~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~-L~~~~~~~  345 (493)
T KOG1330|consen  268 PAFIY-YSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPF-LFLFPAFT  345 (493)
T ss_pred             hhHHH-HHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHH-HHHHHhhh
Confidence            11100 00111121  1222334555556677888888888872    2210011      1111111111 11111122


Q ss_pred             CCCCCcchHHHHHHHHHHhhhhHHhh-hhhHhhHHhhccCC-chhhhhHHHHHHHH
Q 020441          225 VTSGVLGTLYPLIMAALLGIGDGVLN-TQLSALLGILFKHD-TEGAFAQLKVWQCA  278 (326)
Q Consensus       225 ~~~~~~~~~~~~~~~~l~G~~d~~~~-~~~~~il~~~f~~~-~~~~fa~~~~~~~~  278 (326)
                      .++     .....+.++.|..-...+ ....-++.+..|.+ |.++++..+....+
T Consensus       346 ~~s-----~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~  396 (493)
T KOG1330|consen  346 SSS-----MIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHI  396 (493)
T ss_pred             hHH-----HHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHH
Confidence            211     233444555566554443 44555666777765 67788866666533

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.70  E-value=2e-06  Score=83.53  Aligned_cols=112  Identities=11%  Similarity=0.054  Sum_probs=71.4

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  251 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~  251 (326)
                      ..++....++++...++.+.|.+..+++|.|..++++.++.....-. +...+++..    ...+...++-|++-+....
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Ga-ma~~~~~n~----~~~i~~~~l~g~giG~~~~  424 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGA-MAAVRPDNK----NAAIAFLVLAGFGIGGILV  424 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH-HHHccCCCc----chHHHHHHHHHHhHHHHHH
Confidence            45666677888888888888888766665555555665554432222 223334331    2334556667777777666


Q ss_pred             hhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhh
Q 020441          252 QLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       252 ~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~  288 (326)
                      ....+..-..|++. ..+.++.-...++|++++..+..
T Consensus       425 ~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~  462 (599)
T PF06609_consen  425 PAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN  462 (599)
T ss_pred             HHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            66666655567664 66777888888888888877764

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.69  E-value=4.5e-07  Score=85.93  Aligned_cols=113  Identities=17%  Similarity=0.115  Sum_probs=86.6

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHh
Q 020441          170 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL  249 (326)
Q Consensus       170 ~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~  249 (326)
                      ..+.++...++.++..+++++.|++.||+|||+ ++..+.++.....++... .....+   .+..++..++.|++.+..
T Consensus        70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~-~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~r~l~G~~~~~~  144 (481)
T TIGR00879        70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKK-SLLIIALLFVIGAILMGL-AAFALS---VEMLIVGRVLLGIGVGIA  144 (481)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHH-HHHHHHHHHHHHHHHHHH-hccccc---hHHHHHHHHHHHhhhhHH
Confidence            346788899999999999999999999999995 666665555443332211 111111   235677788999999999


Q ss_pred             hhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHh
Q 020441          250 NTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIG  287 (326)
Q Consensus       250 ~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~  287 (326)
                      .+...+++++.+|++ +..+.+.++....+|..+++.+.
T Consensus       145 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       145 SALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999866 56688899999999999999988

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.68  E-value=1.4e-05  Score=77.49  Aligned_cols=261  Identities=10%  Similarity=-0.037  Sum_probs=135.9

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      ++.|+++|++.+...+...++++|.-+          ++.|+....+ ......+...+...+.++..        +||.
T Consensus       175 ~~~Rfl~G~~~~~~~~~~~~~~~E~~~----------~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~Wr~  235 (521)
T KOG0255|consen  175 LIFRFLSGFFGSGPLTVGFGLVAEIVS----------PKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DWRW  235 (521)
T ss_pred             HHHHHHHHhhccchhHHhHhhheeecC----------cchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hHHH
Confidence            468999999999999999999999999          5689888887 66666666666666655544        5998


Q ss_pred             hHHHHHHHHHHHHHHHHHcc-CCccc-----cccc--hhhhc--------hhhhhHHHHH-HHH------------HHHh
Q 020441           82 LFIVFLGVITLGTILMCFLR-KEEDK-----GEKE--TADAS--------VNFYSYLVSL-SKS------------ITTL  132 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~-~~~~~-----~~~~--~~~~~--------~~~~~~~~~~-~k~------------~~~~  132 (326)
                      .+.+....+.+..++ .+++ +..+-     +.++  +..++        ........+. .+.            ...+
T Consensus       236 ~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  314 (521)
T KOG0255|consen  236 LFWIISIPSGLFLLL-WFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDL  314 (521)
T ss_pred             HHHHHHHHHHHHHHH-HHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhh
Confidence            787655444444444 3443 22210     0000  00000        0000001111 000            1223


Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHH
Q 020441          133 LADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQ  212 (326)
Q Consensus       133 ~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~  212 (326)
                      ++.|++....-...+..+..+.  .++...+....+|. .......+.+..+.......+...|+.|||. ....+..+.
T Consensus       315 ~~~~~l~~~~~~~~~~~~~~~~--~y~gl~~~~~~lg~-~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~-~~~~~~~~~  390 (521)
T KOG0255|consen  315 FRTPRLRYRTLYLLFIWFVFSL--VYYGLSLNVSGLGG-NIYLNFTLSGLVELPAYFRNGLLLPEFGRRP-PLFLSLFLA  390 (521)
T ss_pred             hcCHHHHHHHHHHHHHHHHHhH--HHHhhhhhhhhcCc-hHHHHHHHHHHHHhhHHHHHHHHHHHhCcHH-HHHHHHHHH
Confidence            3333322222112222211111  12221222222332 2233345566677777777788889999884 555555444


Q ss_pred             HHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          213 VVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       213 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ..+.+..  .+.++...  .+...+...+-.++-+.-....+....|++|+. +..+.+..+....+|+.+++.+....
T Consensus       391 ~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~  465 (521)
T KOG0255|consen  391 GIGLLLF--GWLPDDLG--GWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLL  465 (521)
T ss_pred             HHHHHHH--HHhhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333221  12222100  012222222222233333334488889999987 56678888888888888888776433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.67  E-value=1.4e-06  Score=81.16  Aligned_cols=117  Identities=15%  Similarity=0.096  Sum_probs=89.2

Q ss_pred             cccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhh
Q 020441          167 ALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  244 (326)
Q Consensus       167 ~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~  244 (326)
                      .+|.  ++.++....+.++..+++++.|++.||+|||+ ++..+..+.....++  ..+.++     ++..++..++.|+
T Consensus        32 ~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~l--~~~~~~-----~~~l~~~r~l~G~  103 (382)
T PRK10091         32 DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKH-ILLFLVALCVIGNAM--FTLSSS-----YLMLAIGRLVSGF  103 (382)
T ss_pred             HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHH-HHHHHHHHHHHHHHH--HHHhCc-----HHHHHHHHHHHHh
Confidence            3554  36788899999999999999999999999995 766666665544332  233343     3566777889999


Q ss_pred             hhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          245 GDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       245 ~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +.+...+....++.+.+|++ +..+++.+...+++|..+++.+...+.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  151 (382)
T PRK10091        104 PHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS  151 (382)
T ss_pred             hhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence            99998888888999999876 455788888888888888877766553

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.67  E-value=1.2e-06  Score=81.87  Aligned_cols=110  Identities=14%  Similarity=0.127  Sum_probs=85.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhh
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN  250 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~  250 (326)
                      ...+++...+.+...+..++.|++.||+|||+ ++..+.++.....+...  ..++     +   ++..++.|++.+...
T Consensus        38 ~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~-vl~~~~~~~~~~~~~~~--~~~~-----~---~~~r~l~G~~~a~~~  106 (393)
T PRK11195         38 WSQPLLQMFFVLAYIVLAPFVGAFADSFPKGR-VMFIANGIKLLGCLLML--FGIH-----P---LLAYGLVGIGAAAYS  106 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHhhhccCCch-hhHHHHHHHHHHHHHHH--HHHH-----H---HHHHHHHHHHHHHHH
Confidence            36788888999999999999999999999996 77766665544332211  1222     1   444567899999999


Q ss_pred             hhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          251 TQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       251 ~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +...+++.+.+|++ +..+.+.......+|..+++.++..+.
T Consensus       107 pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~  148 (393)
T PRK11195        107 PAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA  148 (393)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999976 466888888889999999998887664

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.67  E-value=2.6e-06  Score=85.43  Aligned_cols=110  Identities=11%  Similarity=-0.021  Sum_probs=83.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhh
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN  250 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~  250 (326)
                      ...+++..++.++.+++++++|+++||+|||+ .++.+.++..+..++.  .+.++     ++..++.-++.|++.+...
T Consensus       202 ~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~-~lii~lil~~i~~ll~--afa~s-----~~~llv~R~l~G~g~g~~~  273 (742)
T TIGR01299       202 SGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQ-CLLICLSVNGFFAFFS--SFVQG-----YGFFLFCRLLSGFGIGGAI  273 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHH--HHHhh-----HHHHHHHHHHHHHHHHHHH
Confidence            36778888889999999999999999999995 6655555444333221  22333     3556677888999999999


Q ss_pred             hhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhh
Q 020441          251 TQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       251 ~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~  288 (326)
                      +..++++.+.+|.+ +...++..+.+.++|..++..++.
T Consensus       274 p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~  312 (742)
T TIGR01299       274 PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAW  312 (742)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999976 566788888888888888776553

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.66  E-value=1.6e-06  Score=80.85  Aligned_cols=115  Identities=23%  Similarity=0.185  Sum_probs=86.0

Q ss_pred             ccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhh
Q 020441          168 LGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG  245 (326)
Q Consensus       168 lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~  245 (326)
                      +|.+  +.++...++.++..++.++.|++.||+|||+ .+..+.+...+.....  ...++     ....++..++.|++
T Consensus        33 ~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~-~l~~~~~~~~i~~~~~--~~~~~-----~~~~~~~~~l~g~~  104 (392)
T PRK10473         33 LNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKP-VAIPGAALFIIASLLC--SLAET-----SSLFLAGRFLQGIG  104 (392)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChH-HHHHHHHHHHHHHHHH--HHhCc-----HHHHHHHHHHHHhh
Confidence            4543  6788888899999999999999999999995 6666665555443322  22333     24456667888999


Q ss_pred             hHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          246 DGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       246 d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .+...+..++++.+.+|++ +..+.+.++....+|..+++.+...+
T Consensus       105 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l  150 (392)
T PRK10473        105 AGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI  150 (392)
T ss_pred             hhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888999999999865 56688888888888888887776544

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.65  E-value=1.3e-06  Score=81.23  Aligned_cols=117  Identities=11%  Similarity=-0.007  Sum_probs=89.7

Q ss_pred             ccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHh
Q 020441          166 PALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG  243 (326)
Q Consensus       166 ~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G  243 (326)
                      +.+|.  .++++...++.+...+++++.|++.||+|||+ ++..+.++..+..+..  .+.++     ++..++..++.|
T Consensus        40 ~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~-~~~~~~~~~~~~~~~~--~~~~~-----~~~l~~~~~l~G  111 (405)
T TIGR00891        40 GEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL-PMVTSIVLFSAGTLAC--GFAPG-----YITMFIARLVIG  111 (405)
T ss_pred             HHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHH--HHhcc-----HHHHHHHHHHHH
Confidence            34454  37788888999999999999999999999996 6666655544443221  22333     355677789999


Q ss_pred             hhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          244 IGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       244 ~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ++.+...+...+++.+.+|++ +..+.+.++....+|..++..+...+
T Consensus       112 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l  159 (405)
T TIGR00891       112 IGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLV  159 (405)
T ss_pred             hhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999866 56688888999899998888887655

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.65  E-value=2.3e-06  Score=80.53  Aligned_cols=142  Identities=12%  Similarity=0.064  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHH
Q 020441          141 IIPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLW  218 (326)
Q Consensus       141 l~p~~~~~g~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~  218 (326)
                      +.-.++..|+..+......+ .+ ++..|.  .+.+++...+.++..+++++.|++.||+|||+ .+..+.++......+
T Consensus         8 ~~~~f~~~G~~~~~~~~l~~-~~-~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~-~~~~g~~l~~~g~~l   84 (410)
T TIGR00885         8 ITSLFALWGFANDITNPMVP-QF-QQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKA-GILLGLFLYALGAFL   84 (410)
T ss_pred             HHHHHHHHHHHHHhHHHHHH-HH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHHH
Confidence            33345556666555433332 12 334454  37889999999999999999999999999995 777776665544322


Q ss_pred             HH-hcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          219 IL-INYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       219 ~~-l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .. ....++     ++..++..++.|++.+..++..+..+.+..|+++ ....+..+..+++|..+++.+.+.+
T Consensus        85 ~~~~~~~~~-----~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l  153 (410)
T TIGR00885        85 FWPAAEIMN-----YTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL  153 (410)
T ss_pred             HHHHHhhcc-----HHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11 111122     3455667788899999999999999988888764 5578889999999999998887655

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.65  E-value=1.3e-06  Score=81.79  Aligned_cols=117  Identities=15%  Similarity=0.068  Sum_probs=84.4

Q ss_pred             ccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHh
Q 020441          166 PALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG  243 (326)
Q Consensus       166 ~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G  243 (326)
                      +.+|.+  +.+.....+.++..+++++.|++.||+|||+ ++..+........+..  .+.++     ++..++..++.|
T Consensus        41 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~-~l~~~~~~~~~~~~~~--~~~~~-----~~~l~~~~~l~G  112 (406)
T PRK15402         41 EDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRP-VMLAGVAFFILTCLAI--LLAQS-----IEQFTLLRFLQG  112 (406)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHH--HHHcc-----HHHHHHHHHHHH
Confidence            344543  6777888899999999999999999999995 6666655544443322  22333     345666778889


Q ss_pred             hhhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          244 IGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       244 ~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ++.+...+..++.+.+.+|+++ ..+.+.......+|..+++.+...+
T Consensus       113 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l  160 (406)
T PRK15402        113 IGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAAL  160 (406)
T ss_pred             hHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888888899999998764 4567766666677777777776554

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.64  E-value=8.9e-07  Score=80.01  Aligned_cols=260  Identities=14%  Similarity=0.071  Sum_probs=144.4

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|.+.|+.-|-+-.. -+|++|..+          |+.|++.++.+-..+++|.++|+.++-++-...+   ..+...
T Consensus       125 v~aR~l~Gi~kgnl~v~-rAiisdV~s----------ek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~---~~g~~p  190 (451)
T KOG2615|consen  125 VLARFLGGIFKGNLSVI-RAIISDVVS----------EKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSS---ISGSYP  190 (451)
T ss_pred             HHHHHhhhhccCchHHH-HHHHHhhcC----------hhhccceeeeeehhhhcchhhcchhhhHHHhhHh---hhccCc
Confidence            45699999998877764 567888888          6789999999999999999999999877654111   122211


Q ss_pred             hHH-HHHHH--HHH-HHHHHHHccCCcccccc--chh---hhc--hhhhhHHHHHHHHHHHhhcchhhHHH---------
Q 020441           82 LFI-VFLGV--ITL-GTILMCFLRKEEDKGEK--ETA---DAS--VNFYSYLVSLSKSITTLLADVRMLLI---------  141 (326)
Q Consensus        82 ~f~-~~~~i--~~l-~~~l~~~l~~~~~~~~~--~~~---~~~--~~~~~~~~~~~k~~~~~~~~~~~lll---------  141 (326)
                      .+. .+.++  ... -.+..+++|++.+.+++  +..   |..  ..+..++..  ......++|++....         
T Consensus       191 ~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~lrn~p~~~~i~~~~i~~l  268 (451)
T KOG2615|consen  191 FALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAADDRLALLKFAR--IFKVAALRNPPLLDFISVLRIFGL  268 (451)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccchhhhhhhhhhhcchhh--hhhhhhhcCccccchHHHHHHHHH
Confidence            122 11111  112 12445677765332211  100   000  000001110  011223455433221         


Q ss_pred             ---HHHHHHHHHHHHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCC-hhhHHHHHHHHHHHH
Q 020441          142 ---IPLFAYSGLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPS-ITFIVSGGAIAQVVV  215 (326)
Q Consensus       142 ---~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~-~~~i~~~g~i~~~~~  215 (326)
                         .-+.+++|++      .+.+.+-..-+|.+  +.|.+....|+...+.+....+..||.+. .+......  +..+.
T Consensus       269 ~~~ly~~l~s~~~------~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~--l~~~v  340 (451)
T KOG2615|consen  269 HYFLYLELFSGLE------NTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFS--LLLIV  340 (451)
T ss_pred             HHHHHHHHHHHHH------hhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHH--HHHHH
Confidence               1112222221      11111212224443  66776777776666655555555555431 11121111  11111


Q ss_pred             HHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          216 FLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       216 ~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      -...++.+.+.+     ...+....+..+..+..-|.+..+..+..|.+ |.+..++.+...+++-++++.++...
T Consensus       341 P~~llls~~~~~-----~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i  411 (451)
T KOG2615|consen  341 PAFLLLSLARTP-----VVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVI  411 (451)
T ss_pred             HHHHHHhccccc-----hhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhee
Confidence            112234555553     45677788889999999999999999999865 67788899999999999999998433

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.64  E-value=3.9e-05  Score=73.53  Aligned_cols=266  Identities=8%  Similarity=-0.029  Sum_probs=135.7

Q ss_pred             hhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhhHHHHH
Q 020441            8 LGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFL   87 (326)
Q Consensus         8 ~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~f~~~~   87 (326)
                      .++|.|...+...+++.|.-|++        +++|+..+++++...+++..+|+.+...+..      ..||+..|.+..
T Consensus       110 i~iG~G~~~~~~~alv~elfp~~--------~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~------~~Gw~~~F~iaa  175 (493)
T PRK15462        110 IVCGYGLFKSNVSCLLGELYEPT--------DPRRDGGFSLMYAAGNVGSIIAPIACGYAQE------EYSWAMGFGLAA  175 (493)
T ss_pred             HHHhcccccccHHHHHHHHCCCC--------CccccceehHHHHHHHHHHHHHHHHHHHHHh------hhChHHHHHHHH
Confidence            34455555555556666655532        3478889999999999999999888876643      236887787654


Q ss_pred             HHHHHHHHHHHHccCCccc----cccchhhhchhh-----------------hhHHHHHHHH----------------HH
Q 020441           88 GVITLGTILMCFLRKEEDK----GEKETADASVNF-----------------YSYLVSLSKS----------------IT  130 (326)
Q Consensus        88 ~i~~l~~~l~~~l~~~~~~----~~~~~~~~~~~~-----------------~~~~~~~~k~----------------~~  130 (326)
                      +.+.++.+..++.++...+    +++..++++...                 .....+....                +.
T Consensus       176 igm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (493)
T PRK15462        176 VGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIY  255 (493)
T ss_pred             HHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444333322111    010000000000                 0000000000                00


Q ss_pred             -Hhh--cc-hhhHHHHHHHHHHH-----HHHHHH-Hhhccccccccc-ccch-hhHHHHHHHHHHHHHHHhhhhhhccCC
Q 020441          131 -TLL--AD-VRMLLIIPLFAYSG-----LQQAFV-WAEFTKEIVTPA-LGVS-GVGGAMAVYGAFDAICSLAAGRLTTGL  198 (326)
Q Consensus       131 -~~~--~~-~~~lll~p~~~~~g-----~~~~f~-~~~~~~~~~~~~-lg~~-~~~~~~~~~gi~~~i~~~~~G~l~d~~  198 (326)
                       +..  .| +|+...+++++..-     ++|+.. ...|.+....+. .|.+ -..+...+..+..++.+|+.+++=.|.
T Consensus       256 ~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l  335 (493)
T PRK15462        256 RKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKES  335 (493)
T ss_pred             HhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence             001  12 35555554444332     222221 123333333333 3432 244556677887888888776552111


Q ss_pred             ---CC--hhhH-HHHHHHHHHHHHHHHHh--cccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhh
Q 020441          199 ---PS--ITFI-VSGGAIAQVVVFLWILI--NYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAF  269 (326)
Q Consensus       199 ---g~--~~~i-~~~g~i~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~f  269 (326)
                         +|  ..+. +.+|.++..+++..+.+  ...++.....+++..+.+++.+++.-+..+.-.++.+++.|++ +...+
T Consensus       336 ~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~m  415 (493)
T PRK15462        336 VAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLT  415 (493)
T ss_pred             hcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHH
Confidence               11  1112 45566655555432221  1111111123455677788999999999999999999999987 45567


Q ss_pred             hHHHHH-HHHHHHHHHHHh
Q 020441          270 AQLKVW-QCASIAVVFFIG  287 (326)
Q Consensus       270 a~~~~~-~~~g~~i~~~i~  287 (326)
                      +.+-+. .++|..++-.+.
T Consensus       416 g~w~l~~~~~~~~~~g~~~  434 (493)
T PRK15462        416 GIYMLLSGAIANYLAGVIA  434 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            766543 356655544443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=98.63  E-value=2.2e-06  Score=82.92  Aligned_cols=115  Identities=21%  Similarity=0.166  Sum_probs=83.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHH-HHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVF-LWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN  250 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~  250 (326)
                      .++++.....+-..+.+++.|.+.||+.||+ +++.+-++.+... ++..+.+...   ..++..++..++.|++.+..+
T Consensus        46 ~valv~~a~~LP~~Llsl~aG~laDr~drrr-ili~~~~~~~~~~~~L~~l~~~~~---~~~~~Ll~~~fl~g~~~a~~~  121 (524)
T PF05977_consen   46 MVALVQAASTLPILLLSLFAGALADRFDRRR-ILILSQLLRALVALLLAVLAFFGL---LSPWLLLILTFLLGIGSAFFN  121 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcccchH-HHHHHHHHHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHHHHHHH
Confidence            6777778888888899999999999999996 6666655443222 2222222111   124677888999999999999


Q ss_pred             hhhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          251 TQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       251 ~~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      +..++++.++.|+++ ..+.+..+...++...+++.++..+
T Consensus       122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~L  162 (524)
T PF05977_consen  122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGIL  162 (524)
T ss_pred             HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            999999999999775 5577777777777666666666544

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.62  E-value=2e-06  Score=80.92  Aligned_cols=116  Identities=14%  Similarity=0.013  Sum_probs=82.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHH-hcccCCCCCcchHHHHHHHHHHhhhhHHh
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL-INYSVTSGVLGTLYPLIMAALLGIGDGVL  249 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~l~G~~d~~~  249 (326)
                      .+.+++...+.+...+++++.|++.||++||+ ++..+.++......... ..+.++++   ++..++..++.|++.+..
T Consensus        52 ~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~~~  127 (417)
T PRK10489         52 LQVGLSVTLTGGAMFIGLMVGGVLADRYDRKK-LILLARGTCGLGFIGLALNAFLPEPS---LLAIYLLGLWDGFFGSLG  127 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHhhhcCCce-EEEehHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHHHHH
Confidence            37889999999999999999999999999985 55445444333222111 11111111   345566777889998888


Q ss_pred             hhhhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          250 NTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       250 ~~~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .+...+.+.+..|+++ ..+.+......++|..+++.+...+
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l  169 (417)
T PRK10489        128 VTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLL  169 (417)
T ss_pred             HHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHH
Confidence            8888899999998664 5677788888888888888887655

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.62  E-value=1e-06  Score=81.88  Aligned_cols=113  Identities=12%  Similarity=-0.030  Sum_probs=87.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhh
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN  250 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~  250 (326)
                      .++|++...+.++..+++++.|++.||+|||+ .+..+.++.......  ..+.++     ++..++..++.|++.+...
T Consensus        41 ~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~-~~~~~~~~~~~~~~~--~~~~~~-----~~~l~~~~~l~G~~~~~~~  112 (381)
T PRK03633         41 WQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR-SYYLASLIFAAGCAG--LGLMVG-----FWSWLAWRFVAGIGCAMIW  112 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHH--HHHhcc-----HHHHHHHHHHHHHHHHHHH
Confidence            48899999999999999999999999999985 666666555544322  123333     3556677889999999888


Q ss_pred             hhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          251 TQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       251 ~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +.....+.+..|++ +..+++.++....+|..+++.+...+.
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  154 (381)
T PRK03633        113 VVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS  154 (381)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            87777777777654 566888999999999999999887664

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.62  E-value=1.9e-06  Score=80.54  Aligned_cols=116  Identities=18%  Similarity=0.029  Sum_probs=89.1

Q ss_pred             cccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhh
Q 020441          167 ALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  244 (326)
Q Consensus       167 ~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~  244 (326)
                      .+|.  ++++++...+.++..+++++.|++.||+|||+ ++..+.++.....+..  ...++     ++..++..++.|+
T Consensus        44 ~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~l~G~  115 (406)
T PRK11551         44 EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKR-ILIVSVALFGLFSLAT--AQAWD-----FPSLLVARLLTGV  115 (406)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-hHHHHHHHHHHHHHHH--HHhcc-----HHHHHHHHHHHHh
Confidence            3454  47889999999999999999999999999996 6666655544433221  22333     3556777889999


Q ss_pred             hhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          245 GDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       245 ~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      +.+...+...+++.+.+|++ +..+.+.+.....+|..+++.+...+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  162 (406)
T PRK11551        116 GLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA  162 (406)
T ss_pred             hHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999865 67788888888999999888877544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.61  E-value=2.5e-06  Score=77.36  Aligned_cols=114  Identities=19%  Similarity=0.200  Sum_probs=91.0

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHh
Q 020441          170 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL  249 (326)
Q Consensus       170 ~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~  249 (326)
                      ..+.+.+.....+...+++++.|++.||+|||+ .+..+.+......+....  .++     ++..++..++.|++.+..
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~-~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~l~g~~~~~~  104 (352)
T cd06174          33 ASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRR-VLLLGLLLFALGSLLLAF--ASS-----LWLLLVGRFLLGLGGGAL  104 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCch-hhHHHHHHHHHHHHHHHH--hcc-----HHHHHHHHHHHHcccccc
Confidence            347788889999999999999999999999996 666666665554433222  232     356677788999999999


Q ss_pred             hhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          250 NTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       250 ~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      .+...+++.+.+|++ +..+++..+...++|..+++.+...+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  147 (352)
T cd06174         105 YPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLA  147 (352)
T ss_pred             cHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999975 577889999999999999998887663

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.60  E-value=1.4e-06  Score=80.56  Aligned_cols=113  Identities=15%  Similarity=0.169  Sum_probs=87.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhh
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN  250 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~  250 (326)
                      .++++...++.++..+++++.|++.||+|||+ ++..+.++........  ...++     ++..++..++.|++.+...
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~i~~~~~--~~~~~-----~~~~~~~~~l~g~~~~~~~   97 (377)
T PRK11102         26 GSVQMTLSAYILGFAIGQLFYGPMADSFGRKP-VILGGTLVFALAAVAC--ALAQT-----IDQLIYMRFLHGLAAAAAS   97 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhchHHhhcCChH-HHHHHHHHHHHHHHHH--HHHcc-----HHHHHHHHHHHHHHHHHHH
Confidence            47788888999999999999999999999985 7666666655443322  22233     3556677888999999999


Q ss_pred             hhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          251 TQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       251 ~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +...+++.+.+|++ +..+++.+.....+|..+++.+...+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  139 (377)
T PRK11102         98 VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLL  139 (377)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999866 567888888888888888888876553

>TIGR00895 2A0115 benzoate transport

Probab=98.60  E-value=7.5e-07  Score=82.44  Aligned_cols=116  Identities=19%  Similarity=0.110  Sum_probs=88.7

Q ss_pred             cccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhh
Q 020441          167 ALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  244 (326)
Q Consensus       167 ~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~  244 (326)
                      .+|.  .+.+++.....++..+++++.|++.||+|||+ .+..+.++.....+..  ...++     .+..++..++.|+
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~g~  117 (398)
T TIGR00895        46 EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKR-VLLWSILLFSVFTLLC--ALATN-----VTQLLILRFLAGL  117 (398)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH-HHHHHHHHHHHHHHHH--HHccc-----hHHHHHHHHHHhc
Confidence            3454  36788888888999999999999999999985 6666665554443322  22233     2456667788999


Q ss_pred             hhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          245 GDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       245 ~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      +.+...+...+++.+.+|++ +..+++.+.....+|..++..+...+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  164 (398)
T TIGR00895       118 GLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL  164 (398)
T ss_pred             ccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHH
Confidence            99999999999999999865 56688899999999999888887655

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.60  E-value=1.7e-06  Score=91.58  Aligned_cols=115  Identities=14%  Similarity=0.072  Sum_probs=87.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHh-cccCCCCCcchHHHHHHHHHHhhhhHHhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI-NYSVTSGVLGTLYPLIMAALLGIGDGVLN  250 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~l~G~~d~~~~  250 (326)
                      ..+++..++.+...+++++.|+++||+|||+ ++..+.++.....++..+ ...++     ++.+++..++.|++.+...
T Consensus        48 ~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~-~l~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~r~l~G~~~~~~~  121 (1146)
T PRK08633         48 LTAIVNALFLLPFLLLSSPAGFLADKFSKNR-VIRIVKLFEVGLTLLIVLAYYLGW-----FWLAFAVTFLLGAQSAIYS  121 (1146)
T ss_pred             HHHHHHHHHHHHHHHHhhhHhhhcccccHHH-HHHHHHHHHHHHHHHHHHHHHHcc-----HHHHHHHHHHHHHHHHhhc
Confidence            4567778888889999999999999999995 666555443322222111 12222     3566777889999999999


Q ss_pred             hhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhhH
Q 020441          251 TQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYISL  292 (326)
Q Consensus       251 ~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~~  292 (326)
                      +..++++.+.+|++ +..+++.+....++|..+++.++..+..
T Consensus       122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633        122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             hHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999876 5678899999999999999998876643

>PTZ00207 hypothetical protein; Provisional

Probab=98.56  E-value=4.8e-06  Score=81.18  Aligned_cols=133  Identities=9%  Similarity=0.061  Sum_probs=86.2

Q ss_pred             HHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcc
Q 020441          154 FVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLG  231 (326)
Q Consensus       154 f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~  231 (326)
                      |.++.+.+.+ .+.+|.+  +++.+..+ +.....+.++.|++.||+|+|+ ++..+.++..+..++..+.....- ...
T Consensus        44 y~fsv~s~~L-~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~-vllig~ll~~iG~ll~ala~~~~i-~~s  119 (591)
T PTZ00207         44 YAFNLISGAM-QARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRP-IFVLSMTVFCLGTLLFALTFQEVI-EGS  119 (591)
T ss_pred             HHHHHHHHHH-HHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHhcccc-cCc
Confidence            3444544432 3345543  44554443 3344456667899999999995 777787776655543333211100 001


Q ss_pred             hHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHH-HHHHhhhh
Q 020441          232 TLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAV-VFFIGPYI  290 (326)
Q Consensus       232 ~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i-~~~i~~~~  290 (326)
                      .+..++..++.|++.+..++.....+.+.||++|..+.++.+...++|+++ +.....++
T Consensus       120 ~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~  179 (591)
T PTZ00207        120 VVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFF  179 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355566677889999988888888899999988888999999999999985 44444443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.56  E-value=1e-06  Score=82.34  Aligned_cols=126  Identities=10%  Similarity=0.088  Sum_probs=77.6

Q ss_pred             cccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHH-HHhcccCCCCCcchHHHHHHH
Q 020441          163 IVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLW-ILINYSVTSGVLGTLYPLIMA  239 (326)
Q Consensus       163 ~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~  239 (326)
                      +.++.+|.  .+++.+..++.++..+++++.|+++||+|||+ .+..+.+..+..... ..+...+..........++..
T Consensus        28 ~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (396)
T TIGR00882        28 WLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKK-HLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGG  106 (396)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            44444454  47899999999999999999999999999996 544443332222211 111112110000011223445


Q ss_pred             HHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          240 ALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       240 ~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ++.|++++...+.......+.-++ +...++..+...++|.++++.+...+
T Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~~g~~~~g~l  156 (396)
T TIGR00882       107 LYLGFVFSAGAGAIEAYIEKVSRN-SNFEYGKARMFGCVGWALCASIAGIL  156 (396)
T ss_pred             HHHHHHhccchhhHHHHHHHhhhh-cccccchhhhhcccHHHHHHHHHhhh
Confidence            667777777777666665553332 23367888888899999998888755

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.56  E-value=5.6e-06  Score=78.45  Aligned_cols=116  Identities=15%  Similarity=0.128  Sum_probs=87.7

Q ss_pred             cccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhh
Q 020441          167 ALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  244 (326)
Q Consensus       167 ~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~  244 (326)
                      .+|.+  +.++....+.++..+++++.|++.||+|||+ ++..+.++.....++  ..+.++     ++..++..++.|+
T Consensus        52 ~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~-~~~~~~~~~~~~~~~--~~~~~~-----~~~l~~~~~l~g~  123 (434)
T PRK11663         52 DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARY-FMGIGLIATGIINIL--FGFSSS-----LWAFALLWVLNAF  123 (434)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCch-hHHHHHHHHHHHHHH--HHHHhH-----HHHHHHHHHHHHH
Confidence            35554  7788889999999999999999999999995 666666555444332  223333     2445555667788


Q ss_pred             hhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          245 GDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       245 ~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      +.+...+...+++.+.+|++ +..+.+.++..+++|..++..+...+
T Consensus       124 ~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l  170 (434)
T PRK11663        124 FQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAI  170 (434)
T ss_pred             HHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88887888889999999865 57788999999999999988777655

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.55  E-value=4.9e-06  Score=78.91  Aligned_cols=145  Identities=11%  Similarity=0.072  Sum_probs=94.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHH
Q 020441          137 RMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVV  214 (326)
Q Consensus       137 ~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~  214 (326)
                      |.+.+..+.+..++..=+.++.....+....+|.+  +.++...+..++..++.+..|++.||+|+|+ ++..+..+..+
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~-v~~~~~ll~~i  112 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRR-WTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH-HHHHHHHHHHH
Confidence            44555555555666555555544333333345554  7888888899999999999999999999885 55555444332


Q ss_pred             HHHHHHhc---ccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhh
Q 020441          215 VFLWILIN---YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       215 ~~~~~~l~---~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~  288 (326)
                      ...+....   ..++     +...+++.+++|++ +.........+.+.||++ +..+.+++.....+|..++..+.+
T Consensus       113 ~~~~~~~a~~~~~~s-----~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p  184 (462)
T PRK15034        113 PCVWLGIAVQNPNTP-----FGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP  184 (462)
T ss_pred             HHHHHHHHHcccCCC-----HHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            22221111   1122     46678888999998 556677788899999976 567888776666666665555554

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.55  E-value=8.7e-07  Score=69.13  Aligned_cols=106  Identities=17%  Similarity=0.103  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhH
Q 020441          178 AVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALL  257 (326)
Q Consensus       178 ~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il  257 (326)
                      ..++++..+++++.|++.||++||+ .+..+........+..  ...++     .+...+..++.|++.+...+..+...
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~-~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~   76 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKP-VLLVGLFIFVLSTAMF--ALSSN-----ITVLIIARFLQGFGAAFALVAGAALI   76 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhH-HHHHHHHHHHHHHHHH--HHhcc-----HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3456678889999999999999985 5555554444333221  22222     35566778899999999999999999


Q ss_pred             HhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          258 GILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       258 ~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      .+.+|++ +..+.+.++....+|..+++.+...+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  111 (141)
T TIGR00880        77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA  111 (141)
T ss_pred             HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence            9999876 566888899999999999888887664

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.54  E-value=5.3e-06  Score=76.47  Aligned_cols=121  Identities=10%  Similarity=0.005  Sum_probs=80.4

Q ss_pred             ccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHH
Q 020441          164 VTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAAL  241 (326)
Q Consensus       164 ~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l  241 (326)
                      ..+.+|.+  +++++..++.+...+.+++.|++.||+|||+.++..+..........  ..+.++     ++..++..++
T Consensus        24 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~-----~~~l~~~~~~   96 (375)
T TIGR00899        24 LSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLL--FAWNRN-----YFLLLVLGVL   96 (375)
T ss_pred             HHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH--HHhcch-----HHHHHHHHHH
Confidence            34455654  78888899999999999999999999998853343343333322222  123333     2444555666


Q ss_pred             HhhhhHHhhhhhHhhHHhhccCCc-hhh--hhHHHHHHHHHHHHHHHHhhhhh
Q 020441          242 LGIGDGVLNTQLSALLGILFKHDT-EGA--FAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       242 ~G~~d~~~~~~~~~il~~~f~~~~-~~~--fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      .|.+.+...+...++..+..|+++ ..+  .+..+...++|..+++.+...+.
T Consensus        97 ~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~  149 (375)
T TIGR00899        97 LSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLA  149 (375)
T ss_pred             HHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHH
Confidence            777777777777788777776553 322  45777778888888888876653

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10133 L-fucose transporter; Provisional

Probab=98.54  E-value=8.4e-06  Score=77.43  Aligned_cols=118  Identities=13%  Similarity=0.084  Sum_probs=89.1

Q ss_pred             cccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHH-hcccCCCCCcchHHHHHHHHH
Q 020441          165 TPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL-INYSVTSGVLGTLYPLIMAAL  241 (326)
Q Consensus       165 ~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~l  241 (326)
                      ++.+|.+  +.++....+.++..+++++.|++.||+|||+ ++..+.++.....+... ....++     +...++..++
T Consensus        53 ~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~-~l~~g~~~~~~~~~l~~~~~~a~~-----~~~ll~~r~l  126 (438)
T PRK10133         53 QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA-GIITGLFLYALGAALFWPAAEIMN-----YTLFLVGLFI  126 (438)
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHH
Confidence            4445544  7889999999999999999999999999995 77777766665443211 122333     3556677788


Q ss_pred             HhhhhHHhhhhhHhhHHhhccCCch-hhhhHHHHHHHHHHHHHHHHhh
Q 020441          242 LGIGDGVLNTQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       242 ~G~~d~~~~~~~~~il~~~f~~~~~-~~fa~~~~~~~~g~~i~~~i~~  288 (326)
                      .|++.+..++..+.++.+..|+++. ...+.++...++|..+++.+..
T Consensus       127 ~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133        127 IAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             HHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998887665543 3577889999999999988764

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.53  E-value=9.2e-06  Score=76.51  Aligned_cols=112  Identities=12%  Similarity=0.027  Sum_probs=82.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  251 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~  251 (326)
                      ..+....++.++..++.++.|.++||+|||+ ++..+........+..  ...++     ....++.-++.|++.+...+
T Consensus        52 ~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~-~l~~~~~~~~~~~~~~--~~a~~-----~~~l~~~r~l~Gi~~~~~~~  123 (413)
T PRK15403         52 LAPASVSLYLAGGMALQWLLGPLSDRIGRRP-VLITGALIFTLACAAT--LFTTS-----MTQFLIARFIQGTSICFIAT  123 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHcCchH-HHHHHHHHHHHHHHHH--HHcCC-----HHHHHHHHHHHHHHHHHHHH
Confidence            5666777888889999999999999999995 7666665555443322  23333     34556667888988887667


Q ss_pred             hhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          252 QLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       252 ~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      ..+.++.+.+|+++ ..+.+.+.....+|..+++.++..+.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~  164 (413)
T PRK15403        124 VGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALM  164 (413)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788889998764 55788888888888888888876553

>TIGR00896 CynX cyanate transporter

Probab=98.53  E-value=5.1e-06  Score=76.34  Aligned_cols=112  Identities=17%  Similarity=0.053  Sum_probs=85.4

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHh
Q 020441          170 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL  249 (326)
Q Consensus       170 ~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~  249 (326)
                      .++.++....+.++..+++++.|++.||+|||+ .+..+.+........  . ..++     ++..++..++.|++.+..
T Consensus        34 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~--~-~~~~-----~~~l~~~~~~~g~g~~~~  104 (355)
T TIGR00896        34 FSVAGLLTALPVLCFAVLAPLAPWLARRFGEER-SVAAGLLLIAAGILI--R-SAPG-----TALLFAGTALIGVGIAII  104 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchH-HHHHHHHHHHHHHHH--H-Hhcc-----HHHHHHHHHHHHHHHHHH
Confidence            346788888999999999999999999999995 666665554433322  1 2233     245566678889999888


Q ss_pred             hhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          250 NTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       250 ~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .+..+.+..+.+|+++..+.+.++..+.+|..++..+...+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~l  145 (355)
T TIGR00896       105 NVLLPSLIKRDFPQRVGLMTGLYSMALMGGAALAAAATVPL  145 (355)
T ss_pred             hccchHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888889999987777788899999999998888776554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.52  E-value=2.3e-06  Score=81.93  Aligned_cols=117  Identities=19%  Similarity=0.129  Sum_probs=90.9

Q ss_pred             cccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhh
Q 020441          167 ALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  244 (326)
Q Consensus       167 ~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~  244 (326)
                      .+|.  ++.+++...+.++..++.++.|++.||+|||+ .+..+.++.....+.  ....++     +...++..++.|+
T Consensus        31 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~--~~~~~~-----~~~l~~~~~~~G~  102 (485)
T TIGR00711        31 DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRR-LFLISTFAFTLGSLL--CGVAPN-----LELMIIFRVIQGF  102 (485)
T ss_pred             hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHH-HHHHHHHHHHHHHHH--HhCcCC-----HHHHHHHHHHHHh
Confidence            3454  36788899999999999999999999999995 666666655544332  223333     3556677788999


Q ss_pred             hhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          245 GDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       245 ~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +.+...+..++++.+.+|++ +..+++.+.....+|..+++.+...+.
T Consensus       103 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  150 (485)
T TIGR00711       103 GGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII  150 (485)
T ss_pred             hhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence            99999999999999999865 566888999999999998888877653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.51  E-value=4.2e-06  Score=76.89  Aligned_cols=118  Identities=19%  Similarity=0.293  Sum_probs=84.1

Q ss_pred             ccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccC-CCCCcchHHHHHHHH
Q 020441          164 VTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSV-TSGVLGTLYPLIMAA  240 (326)
Q Consensus       164 ~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~  240 (326)
                      ..+.+|.+  +.+++...+.++..+++++.|++.||+|||+ .+..+.++..+..+..  .+.+ +     ++..++..+
T Consensus        28 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~i~~~~~--~~~~~~-----~~~~~~~~~   99 (366)
T TIGR00886        28 IKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRY-TTTLSLLLLAIPCLWA--GLAVQS-----YSVLLLLRL   99 (366)
T ss_pred             HHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHHHH--HHHhhh-----HHHHHHHHH
Confidence            44456654  7788889999999999999999999999995 6666666555443322  2222 3     355566677


Q ss_pred             HHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          241 LLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       241 l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      +.|++.+.+ .....++++.+|++ +..+.+.+.....+|..++..+.+.+
T Consensus       100 ~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  149 (366)
T TIGR00886       100 FIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI  149 (366)
T ss_pred             HHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            888886655 45677888999865 56678888877778877777776544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.51  E-value=7.1e-06  Score=76.49  Aligned_cols=117  Identities=20%  Similarity=0.181  Sum_probs=83.8

Q ss_pred             ccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHh
Q 020441          166 PALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG  243 (326)
Q Consensus       166 ~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G  243 (326)
                      +.+|.  .+.++....+.+...+++++.|+++||+|||+ .+..+........+..  ...++     .+..++..++.|
T Consensus        36 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~-~~~~~~~~~~~~~~~~--~~~~~-----~~~l~~~~~~~g  107 (394)
T PRK11652         36 RDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRP-VILVGMSIFILGTLVA--LFAHS-----LTVLIAASAIQG  107 (394)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH-HHHHHHHHHHHHHHHH--HHHcc-----HHHHHHHHHHHH
Confidence            34454  37788889999999999999999999999995 6666655544433221  22233     345566678889


Q ss_pred             hhhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          244 IGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       244 ~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ++.+...+....+..+.+++++ ..+.+.++....++..+++.+...+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l  155 (394)
T PRK11652        108 LGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLL  155 (394)
T ss_pred             hhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888877777788888887653 5567777888887777777776554

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.50  E-value=8.4e-06  Score=77.73  Aligned_cols=122  Identities=15%  Similarity=0.140  Sum_probs=81.4

Q ss_pred             cccch--hhHHHHHHHHHHHHHHHhhhhhhcc----CCCChhhHHHHHHHHHHHHHHHHHhcccCCCC--------Ccc-
Q 020441          167 ALGVS--GVGGAMAVYGAFDAICSLAAGRLTT----GLPSITFIVSGGAIAQVVVFLWILINYSVTSG--------VLG-  231 (326)
Q Consensus       167 ~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d----~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~--------~~~-  231 (326)
                      .+|.+  ..+.+..+..+...+..|+.|+++|    |+|||++.++.+.+.....+.+  +.+.++..        -.. 
T Consensus        33 ~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~l--l~~~~~~~~~~~~~~~~~~~  110 (477)
T TIGR01301        33 ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVIL--IGFAADIGHLFGDNLDKKTK  110 (477)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHH--HHhCchhhhhccccccccch
Confidence            35554  7788899999999999999999999    5999975555455544443322  22222100        000 


Q ss_pred             h---HHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc---hhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          232 T---LYPLIMAALLGIGDGVLNTQLSALLGILFKHDT---EGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       232 ~---~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~---~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .   ....+...++.++....++...++++++.|+++   +.+++..+...++|+.+++.+..+.
T Consensus       111 ~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~  175 (477)
T TIGR01301       111 PRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS  175 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0   112222334455666777888999999999763   3488899999999999999887543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10504 putative transporter; Provisional

Probab=98.50  E-value=5.9e-06  Score=78.98  Aligned_cols=117  Identities=15%  Similarity=0.073  Sum_probs=87.4

Q ss_pred             cccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhh
Q 020441          167 ALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  244 (326)
Q Consensus       167 ~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~  244 (326)
                      .+|.+  +.+++...+.++..++.++.|++.||+|||+ ++..+.++.....+..  ...++     ++..++..++.|+
T Consensus        39 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~-~~~~~~~~~~~~~~~~--~~~~~-----~~~l~~~~~l~g~  110 (471)
T PRK10504         39 SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRN-IFFTAIVLFTLGSLFC--ALSGT-----LNELLLARVLQGV  110 (471)
T ss_pred             HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHHHHH--HHhCC-----HHHHHHHHHHHHh
Confidence            35554  5677778888888999999999999999985 6655554444333221  22333     3455667789999


Q ss_pred             hhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          245 GDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       245 ~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +.+...+...+.+.+.+|+++ ..+++.++...++|..+++.+...+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~  158 (471)
T PRK10504        111 GGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV  158 (471)
T ss_pred             hhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            999999999999999998764 66888999999999999888876553

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.49  E-value=1.6e-06  Score=79.90  Aligned_cols=112  Identities=11%  Similarity=0.031  Sum_probs=87.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhh
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN  250 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~  250 (326)
                      .+++++...+.++..+++++.|++.||+|||+ .+..+.++........  .+.++     ++..++..++.|++.+...
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~-~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~l~g~~~~~~~  100 (399)
T TIGR00893        29 AQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK-TLAVFIVIWGVFTGLQ--AFAGA-----YVSLYILRVLLGAAEAPFF  100 (399)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHhcCcce-eeHHHHHHHHHHHHHH--HHHcC-----HHHHHHHHHHHHHHHHhhh
Confidence            36788899999999999999999999999995 6555655544333221  22233     3566777889999999999


Q ss_pred             hhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          251 TQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       251 ~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      +..+.++.+.+|++ +..+++.++...++|..+++.+...+
T Consensus       101 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  141 (399)
T TIGR00893       101 PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWI  141 (399)
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            99999999999865 56788899999999999988887654

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.47  E-value=1.1e-07  Score=87.74  Aligned_cols=293  Identities=13%  Similarity=0.068  Sum_probs=146.4

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcC-CCCC------
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKD-DKGG------   74 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~-~~~~------   74 (326)
                      ..-|.++|+|.|+.+.-..++.+|.++          +.+||.+.+..++....+...|++++..+..- +...      
T Consensus       148 ~~~R~~LGiGIGGDYPlSAtI~SE~an----------~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~  217 (538)
T KOG0252|consen  148 CFFRFLLGIGIGGDYPLSATIMSESAN----------KKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTY  217 (538)
T ss_pred             HHHHHHhhccccCCCcchHHHhhhhhh----------hccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCc
Confidence            346899999999999999999999999          46999999999999999999999998876541 1000      


Q ss_pred             --CCCCchhhHHHHHHHHHHHHHHHHHccCCcccccc-------c-------hhhh---------c-hhhhhHHHHHHHH
Q 020441           75 --STSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEK-------E-------TADA---------S-VNFYSYLVSLSKS  128 (326)
Q Consensus        75 --~~~~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~-------~-------~~~~---------~-~~~~~~~~~~~k~  128 (326)
                        .+--||+.+.    ++++-.++.++-|-..+|++.       +       .+++         + ....++.++..+.
T Consensus       218 ~~ld~vWRl~~g----lg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~  293 (538)
T KOG0252|consen  218 PHLDGVWRIIFG----LGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGL  293 (538)
T ss_pred             hHHHHHHHHHHH----HHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccch
Confidence              1123897654    344433333333322232211       0       0000         0 0000111122222


Q ss_pred             HHHhhcch--hhHHHHHHHHHHHHHHHHHHhhcccccccccccch----------hhHHHHHHHHHHHHH-HHhhhhhhc
Q 020441          129 ITTLLADV--RMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS----------GVGGAMAVYGAFDAI-CSLAAGRLT  195 (326)
Q Consensus       129 ~~~~~~~~--~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~----------~~~~~~~~~gi~~~i-~~~~~G~l~  195 (326)
                      ..+.+..|  |.+ +........+-.+|+......+.+-..+|..          .+.....+-+++..+ |-++...+.
T Consensus       294 F~~~f~~~hg~~L-lgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~i  372 (538)
T KOG0252|consen  294 FSRLFLRWHGKHL-LGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFI  372 (538)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEe
Confidence            22333333  322 2222333334445543111111111112211          111222222222222 455556778


Q ss_pred             cCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhh-hhHHhhhhhHhhHHhhccCC-chhhhhHHH
Q 020441          196 TGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI-GDGVLNTQLSALLGILFKHD-TEGAFAQLK  273 (326)
Q Consensus       196 d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~-~d~~~~~~~~~il~~~f~~~-~~~~fa~~~  273 (326)
                      |++||+. +-+.|+++..+.+..  +..+.+..... ...++++.+..+ +.-.=++....+-+|.||.+ |....++.-
T Consensus       373 d~iGRk~-iq~~GF~~~~i~~~~--~~~~y~~~~~~-~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsA  448 (538)
T KOG0252|consen  373 DIIGRKY-IQLMGFFIMTIFFFV--IAGPYNQLENT-IGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISA  448 (538)
T ss_pred             ehhhhHH-HHHhhHHHHHHHHHH--HcCCccccccc-CceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHH
Confidence            9999994 777777766554432  22222211001 122333332222 33344566667888999987 555555555


Q ss_pred             HHHHHHHHHHHHHhhhhh---------HHHHHHHHHHHHHHHHHHHHHH
Q 020441          274 VWQCASIAVVFFIGPYIS---------LQAMLIVMVVGICVALVGILFL  313 (326)
Q Consensus       274 ~~~~~g~~i~~~i~~~~~---------~~~~~~~~~~~~~~~~~~~~~~  313 (326)
                      ..--+|+.++......+.         .....++..+..+++.+..+.+
T Consensus       449 A~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~  497 (538)
T KOG0252|consen  449 ASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI  497 (538)
T ss_pred             HhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence            555555555544443332         2334455555555555544433

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.46  E-value=4.9e-06  Score=78.36  Aligned_cols=117  Identities=11%  Similarity=-0.046  Sum_probs=88.1

Q ss_pred             ccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHh
Q 020441          166 PALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG  243 (326)
Q Consensus       166 ~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G  243 (326)
                      +.+|.+  +.++...++.++..+++++.|++.||+|||+ ++..+.+.........  .+.++     .+..++..++.|
T Consensus        46 ~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~-~l~~~~~~~~~~~~~~--~~~~~-----~~~l~~~r~l~G  117 (426)
T PRK12307         46 ADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKP-LMMWSIVAYSVGTGLS--GLASG-----VIMLTLSRFIVG  117 (426)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHH--HHHhH-----HHHHHHHHHHHH
Confidence            344543  6788888899999999999999999999995 6666665555433221  22232     355677788999


Q ss_pred             hhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          244 IGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       244 ~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ++.+...+....++.+.+|++ +..+.+.+....++|..++..+.+.+
T Consensus       118 ~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l  165 (426)
T PRK12307        118 MGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF  165 (426)
T ss_pred             HHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999999999976 56678888888888888887776544

>PRK03699 putative transporter; Provisional

Probab=98.46  E-value=9.1e-06  Score=75.91  Aligned_cols=116  Identities=12%  Similarity=0.099  Sum_probs=83.0

Q ss_pred             cccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhh
Q 020441          167 ALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  244 (326)
Q Consensus       167 ~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~  244 (326)
                      .+|.  ++.++....+.++..+++++.|++.||+|||+ ++..+.++......+.  ...++     ++..++..++.|+
T Consensus        36 ~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~-~~~~~~~~~~i~~~l~--~~~~~-----~~~~~~~~~l~G~  107 (394)
T PRK03699         36 YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKR-QLIFGFALMILAVAGL--MFSHS-----LALFSIAMFVLGV  107 (394)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHH--HHcch-----HHHHHHHHHHHHH
Confidence            3454  47788888899999999999999999999996 6666655544433222  22333     3455667788899


Q ss_pred             hhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          245 GDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       245 ~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      +.+...+...+.+.+.+|++ +..+.+..+...++|..+++.+...+
T Consensus       108 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  154 (394)
T PRK03699        108 VSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYL  154 (394)
T ss_pred             hhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99988888889999999876 45566666667777777776665433

>TIGR00897 2A0118 polyol permease family

Probab=98.45  E-value=5.5e-06  Score=77.65  Aligned_cols=115  Identities=14%  Similarity=0.139  Sum_probs=80.2

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHH-HhcccCCCCCcchHHHHHHHHHHhhhhHH
Q 020441          170 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI-LINYSVTSGVLGTLYPLIMAALLGIGDGV  248 (326)
Q Consensus       170 ~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~l~G~~d~~  248 (326)
                      ..+.+.....++++..+++++.|++.||+|||+ ++..+..+........ .......+    ++..++..++.|++.+.
T Consensus        47 ~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~-~l~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~i~G~g~~~  121 (402)
T TIGR00897        47 PQQSASAFTLYGIAAAISAWISGVVAEIIGPLK-TMMIGLLLWCVGHAAFIVFGLGHAN----YPLILLFYGIRGLGYPL  121 (402)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHHHHHHHHHhccCcc----HHHHHHHHHHHHcchHH
Confidence            347899999999999999999999999999996 6666655544433221 11221111    24456667778888877


Q ss_pred             hhhhhHhhHHhhccCC-chhhhhHHHHHHHHHH-HHHHHHhhh
Q 020441          249 LNTQLSALLGILFKHD-TEGAFAQLKVWQCASI-AVVFFIGPY  289 (326)
Q Consensus       249 ~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~-~i~~~i~~~  289 (326)
                      ........+.+.+|++ +..+.+.++...++|. .+++.+...
T Consensus       122 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~  164 (402)
T TIGR00897       122 FAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY  164 (402)
T ss_pred             HHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7666677777877755 5678888888888886 456666543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.45  E-value=1.1e-05  Score=77.97  Aligned_cols=118  Identities=18%  Similarity=0.138  Sum_probs=88.3

Q ss_pred             ccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHh
Q 020441          166 PALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG  243 (326)
Q Consensus       166 ~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G  243 (326)
                      +.+|.  ++.+++...+.++...+.++.|+++||+|||+ ++..+.++.....+.  ....++     ++..++..++.|
T Consensus        34 ~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~-~l~~~~~~~~~~~~~--~~~a~~-----~~~li~~r~l~G  105 (495)
T PRK14995         34 MTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKR-LLMLGGTLFGLASLA--AAFSPT-----ASWLIATRALLA  105 (495)
T ss_pred             HHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHH--HHHcCC-----HHHHHHHHHHHH
Confidence            34554  36788888999999999999999999999995 776666655544332  223333     355666778899


Q ss_pred             hhhHHhhhhhHhhHHhhcc-CC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          244 IGDGVLNTQLSALLGILFK-HD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       244 ~~d~~~~~~~~~il~~~f~-~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      ++.+...+....++.+.++ ++ +..+++.+.....+|..+++.+...+.
T Consensus       106 ~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~  155 (495)
T PRK14995        106 IGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL  155 (495)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999988888888877774 33 466888999999999999998887664

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.45  E-value=1.5e-05  Score=75.96  Aligned_cols=112  Identities=12%  Similarity=0.082  Sum_probs=78.7

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHh
Q 020441          170 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL  249 (326)
Q Consensus       170 ~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~  249 (326)
                      ..+.++....+.++.++++++.|++.||+|||+ ++..+.++..+..+...+....+++   ....++..++.|++.+..
T Consensus        62 ~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~-~l~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~l~gi~~g~~  137 (452)
T PRK11273         62 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV-FLPAGLILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGWFQGMG  137 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCch-hHHHHHHHHHHHHHHHHhhhccccc---HHHHHHHHHHHHHHHhcc
Confidence            347888899999999999999999999999995 6666665544433221111111111   244566677889988887


Q ss_pred             hhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHH-HHH
Q 020441          250 NTQLSALLGILFKHD-TEGAFAQLKVWQCASIAV-VFF  285 (326)
Q Consensus       250 ~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i-~~~  285 (326)
                      .+.....+.+.+|++ +..+.+.++....+|.++ ++.
T Consensus       138 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l  175 (452)
T PRK11273        138 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLL  175 (452)
T ss_pred             chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            777777888888866 567888888888887643 444

>PRK11043 putative transporter; Provisional

Probab=98.45  E-value=1.5e-05  Score=74.59  Aligned_cols=117  Identities=16%  Similarity=0.146  Sum_probs=83.9

Q ss_pred             ccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHh
Q 020441          166 PALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG  243 (326)
Q Consensus       166 ~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G  243 (326)
                      +.+|.  +++++...++.++..+++++.|++.||+|||+ ++..+..+..+....  ..+.++     .+..++..++.|
T Consensus        34 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~--~~~~~~-----~~~l~~~~~l~G  105 (401)
T PRK11043         34 ADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKP-VLLAGLSLFALGSLG--MLWVES-----AAQLLVLRFVQA  105 (401)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcH-HHHHHHHHHHHHHHH--HHHhcC-----HHHHHHHHHHHH
Confidence            34454  47888889999999999999999999999995 666665554433322  123333     344566667888


Q ss_pred             hhhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          244 IGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       244 ~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ++.+.......+++.+.+|+++ ...++.......+|..+++.+...+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l  153 (401)
T PRK11043        106 VGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWL  153 (401)
T ss_pred             hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877777777788899998764 4567777777777888877777655

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.45  E-value=7.6e-06  Score=75.64  Aligned_cols=238  Identities=14%  Similarity=0.061  Sum_probs=121.4

Q ss_pred             cchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHH---HHHHccCCccc-cccchhhhc
Q 020441           40 TVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTI---LMCFLRKEEDK-GEKETADAS  115 (326)
Q Consensus        40 ~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~f~~~~~i~~l~~~---l~~~l~~~~~~-~~~~~~~~~  115 (326)
                      ++|.....+=....++|..+|+++...+..+.++.+++.|. .+..+..+.+++.+   +..+.+++++. ++...++++
T Consensus       172 ~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~-~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~  250 (480)
T KOG2563|consen  172 DQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWL-FFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAAL  250 (480)
T ss_pred             chhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhh
Confidence            45665555544455677777777777665544333334443 22233334444432   22333332221 221111111


Q ss_pred             hhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHH-hhcccccccccccch--hhHHHHHHHHHHHHHHHhhhh
Q 020441          116 VNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVW-AEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAG  192 (326)
Q Consensus       116 ~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~-~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G  192 (326)
                        ++.++   .+++.++++|++.++++  +.|.+-.-.|+. ..... ..-+.-|..  ..|+...+.-++.++++.+.|
T Consensus       251 --~~~~f---~~si~~~~~n~~F~il~--~~ygi~~g~F~~l~~~l~-~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~g  322 (480)
T KOG2563|consen  251 --QDASF---PKSIKSCFKNRQFIILA--ICYGIGLGLFNSLSTLLN-LALCPSGYEGVFAGYIGALMIVAGMLGALASG  322 (480)
T ss_pred             --hcCcH---HHHHHHHHcCccHHHHH--HHHhhhHHHHHHHHHHhh-hccccccCCccccchhHHHHHHHHHHHHHHHH
Confidence              11223   45666788999987765  344332223331 11111 011111222  455666666666788999999


Q ss_pred             hhccCCCChhhHHHHHHHHHHHH-HHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhh-ccCCchhhhh
Q 020441          193 RLTTGLPSITFIVSGGAIAQVVV-FLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGIL-FKHDTEGAFA  270 (326)
Q Consensus       193 ~l~d~~g~~~~i~~~g~i~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~-f~~~~~~~fa  270 (326)
                      .+.||.+..+-....-....... ..+..+...+.    +.+..+....++|++-....+.-..+-.|. ||..++...+
T Consensus       323 ii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~----~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsG  398 (480)
T KOG2563|consen  323 IIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLG----DSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSG  398 (480)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCC----ceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccce
Confidence            99999765432222222221111 11111111111    124567777888988888888766666666 6776655566


Q ss_pred             -HHHHHHHHHHHHHHHHhhhh
Q 020441          271 -QLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       271 -~~~~~~~~g~~i~~~i~~~~  290 (326)
                       +.-+.|.-+..+.++.....
T Consensus       399 ll~~~gq~f~~~~~~~~~~~~  419 (480)
T KOG2563|consen  399 LLNLSGQIFGVILVFIMGILA  419 (480)
T ss_pred             eEEeehhHHHHHHHHHHHHHh
Confidence             55566777777777766444

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.44  E-value=2e-05  Score=74.68  Aligned_cols=265  Identities=16%  Similarity=0.171  Sum_probs=139.5

Q ss_pred             hhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHH
Q 020441            9 GFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLG   88 (326)
Q Consensus         9 G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~f~~~~~   88 (326)
                      -+|.+.--+..-+.++|.+.++        ++.+|...+..|.....|.++|..++-.+....      +.+..|.+...
T Consensus        97 ~~g~a~~DV~aDa~vvE~~~~~--------p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~------~~~~~f~i~~~  162 (433)
T PF03092_consen   97 SFGYAFADVAADALVVELARRE--------PESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF------GPQGVFLISAA  162 (433)
T ss_pred             HHHHHHHHHhhhHHHHHHhhcC--------CchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC------CCeEEehHHHH
Confidence            3344444444455555666544        555899999999999999999988875544322      23444555554


Q ss_pred             HHHHHHHHHHHccCCccccccch-----hhhchhhhhHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHHHHHHh-hccc
Q 020441           89 VITLGTILMCFLRKEEDKGEKET-----ADASVNFYSYLVSLSKSITTLLADVRMLLIIP-LFAYSGLQQAFVWA-EFTK  161 (326)
Q Consensus        89 i~~l~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p-~~~~~g~~~~f~~~-~~~~  161 (326)
                      +..+..+..+++.+..++++.++     ++.........++..++.++.++++......- ..+........-.+ .+  
T Consensus       163 ~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~f--  240 (433)
T PF03092_consen  163 LPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSF--  240 (433)
T ss_pred             HHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEE--
Confidence            55555555555543222211110     11111112237888888888888876654332 11111111111011 11  


Q ss_pred             cccccccc---ch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHH-h--cccCCCCCcchH
Q 020441          162 EIVTPALG---VS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL-I--NYSVTSGVLGTL  233 (326)
Q Consensus       162 ~~~~~~lg---~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~-l--~~~~~~~~~~~~  233 (326)
                      -+.+..++   .+  ..+....+..++..++..+..+...+..-|+ ++....++.....++-. +  .++-+-...|.+
T Consensus       241 y~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~-~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~  319 (433)
T PF03092_consen  241 YFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRR-IFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQW  319 (433)
T ss_pred             EEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeE
Confidence            02233333   33  4566667777777888888877765555443 54444443332221101 1  111110001112


Q ss_pred             HHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          234 YPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       234 ~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ..+.-.++..+....-......+.+++-|+.. .+.||..-...++|..++-.++..+
T Consensus       320 f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l  377 (433)
T PF03092_consen  320 FALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFL  377 (433)
T ss_pred             EEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22334555666666666777788999999875 4577776666666666666666544

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.42  E-value=1e-05  Score=85.90  Aligned_cols=112  Identities=19%  Similarity=0.083  Sum_probs=84.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHH---HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHH
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSG---GAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGV  248 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~---g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~  248 (326)
                      .++++..++.+...+.+++.|+++||++||+ ++..   ..+.........  ...++     ++..++..++.|++.+.
T Consensus        53 ~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~-~~~~~~~~~~~~~~~~~~~--~~~~s-----~~~l~~~~~l~gi~~a~  124 (1140)
T PRK06814         53 LVTLAGAVFILPFFIFSALAGQLADKYDKAK-LAKILKFAEIGIAALAIYG--FHLNS-----VPLLFAALFLMGIHSAL  124 (1140)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHhhhhhccHHH-HHHHHHHHHHHHHHHHHHH--HHHhh-----HHHHHHHHHHHHHHHHh
Confidence            5677788888999999999999999999985 5322   111111111111  12233     36678888999999999


Q ss_pred             hhhhhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          249 LNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       249 ~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +.+..++++.+.+|+++ ..+.+......++|..+++.++..+.
T Consensus       125 ~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~  168 (1140)
T PRK06814        125 FGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLAT  168 (1140)
T ss_pred             hchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998764 66899999999999999999998774

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.41  E-value=1.6e-05  Score=75.35  Aligned_cols=114  Identities=10%  Similarity=0.056  Sum_probs=81.6

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhc-ccCCCCCcchHHHHHHHHHHhhhhHH
Q 020441          170 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILIN-YSVTSGVLGTLYPLIMAALLGIGDGV  248 (326)
Q Consensus       170 ~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~l~G~~d~~  248 (326)
                      .++.++...++.++..+++++.|++.||+|||+ .+..+.++.....+..... ...++    ....++..++.|++.+.
T Consensus        60 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~l~g~~~g~  134 (438)
T TIGR00712        60 KGELGFALSAISIAYGFSKFIMGSVSDRSNPRV-FLPAGLILSAAVMLLMGFVPWATSS----IAIMFVLLFLNGWFQGM  134 (438)
T ss_pred             HhHhHHHHHHHHHHHHHhhhccchhhhccCCce-ehHHHHHHHHHHHHHHhccccccch----HHHHHHHHHHHHHHhhc
Confidence            347888899999999999999999999999985 6556655554443221111 11111    23345556778888888


Q ss_pred             hhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhh
Q 020441          249 LNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       249 ~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~  288 (326)
                      ..+.....+.+.+|++ +..+++.++....+|..++..+..
T Consensus       135 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~  175 (438)
T TIGR00712       135 GWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVL  175 (438)
T ss_pred             chHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHH
Confidence            8787888888999865 577899999999888888765544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.39  E-value=1.3e-05  Score=78.84  Aligned_cols=186  Identities=17%  Similarity=0.203  Sum_probs=114.4

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCC-------
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGG-------   74 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~-------   74 (326)
                      +.|-++.|+|+.++|+---+|+-|++.          +++-..+.|+.+.+..+|-++|-+++.+.++-..+.       
T Consensus       241 f~~q~l~GIG~Tpi~tlGisYiDDnvk----------~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~i  310 (735)
T KOG3626|consen  241 FLGQLLLGIGATPIFTLGISYIDDNVK----------KKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGI  310 (735)
T ss_pred             HHHHHHhhcCCCCCccCCCcccccccc----------ccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCC
Confidence            467899999999999999999999998          457889999999999999999999998877632211       


Q ss_pred             CCC------CchhhHHHHHHHHHHHHHHHHHccCCccccc------c-----chh---hhchhhhhHHHHHHHHHHHhhc
Q 020441           75 STS------GTTLLFIVFLGVITLGTILMCFLRKEEDKGE------K-----ETA---DASVNFYSYLVSLSKSITTLLA  134 (326)
Q Consensus        75 ~~~------~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~------~-----~~~---~~~~~~~~~~~~~~k~~~~~~~  134 (326)
                      ...      -|..=|++...+..+..+.+++.|+..+...      +     +++   +++....+.+++..+.++++++
T Consensus       311 t~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~  390 (735)
T KOG3626|consen  311 TPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLS  390 (735)
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhc
Confidence            111      1555677766667777777778876433210      0     001   1112223366788888889999


Q ss_pred             chhhHHHHHH-HHHHHHHHHHHHhhcccccccccccch--hhHHHHHHHHH-HHHHHHhhhhhhccCCC
Q 020441          135 DVRMLLIIPL-FAYSGLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGA-FDAICSLAAGRLTTGLP  199 (326)
Q Consensus       135 ~~~~lll~p~-~~~~g~~~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi-~~~i~~~~~G~l~d~~g  199 (326)
                      ||-.++.+-. .+..-...+|+  .|.+.|.....|.+  .+-..+...++ +.++|..++|.+.+|+.
T Consensus       391 N~if~~~~l~~~~~~~~~~G~~--tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk  457 (735)
T KOG3626|consen  391 NPIFMLVVLASVIESLAITGYI--TFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK  457 (735)
T ss_pred             CchHHHHHHHHHHHHHHHhhHH--HhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence            8876543311 11111222222  34445666666654  22222222222 23455566677766653

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.37  E-value=3.5e-05  Score=72.19  Aligned_cols=140  Identities=11%  Similarity=-0.051  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHhhhhhhccCC-----CChhhHHHHHHHHHHHHHHHH
Q 020441          145 FAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGL-----PSITFIVSGGAIAQVVVFLWI  219 (326)
Q Consensus       145 ~~~~g~~~~f~~~~~~~~~~~~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~-----g~~~~i~~~g~i~~~~~~~~~  219 (326)
                      .+.+|...+|..+..+.-++++.+..+++|....+.-.  .+..+++|++.||+     |||++.+..+.+....+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l   85 (402)
T PRK11902          8 GFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAM   85 (402)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHH
Confidence            34456656666555543334443344578877655553  58899999999999     776545555554444333322


Q ss_pred             HhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          220 LINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       220 ~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .+. +++.+   .+..++..++.+++.+...+...+++.+.+|++ +..+.+.....+++|..++..+...+
T Consensus        86 ~~~-~~~~~---~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l  153 (402)
T PRK11902         86 AFC-PPHAA---LWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL  153 (402)
T ss_pred             Hhc-Cccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            222 22211   244566667778888888899999999999876 45566666666677766666655443

>PRK09528 lacY galactoside permease; Reviewed

Probab=98.37  E-value=4.4e-06  Score=78.68  Aligned_cols=156  Identities=13%  Similarity=0.093  Sum_probs=80.1

Q ss_pred             hcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHH
Q 020441          133 LADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAI  210 (326)
Q Consensus       133 ~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i  210 (326)
                      +++|+...+.-..+......++..+.++. +..+.+|.  .++|++...+.++..+++++.|+++||+|||+ .+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~-~~~~~~~   84 (420)
T PRK09528          7 LKNPNYWIFSLFFFFFFFIWSSWFSFFPI-WLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKK-HLLWIIS   84 (420)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-HHHHHHH
Confidence            44555555433333333333333344332 33444454  47899999999999999999999999999986 5444332


Q ss_pred             HHHHHHHHHHh-cccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhh
Q 020441          211 AQVVVFLWILI-NYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPY  289 (326)
Q Consensus       211 ~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~  289 (326)
                      .........+. ...+.....-....++..+..|.+.....+....+. +.+++++...++..+.+.++|.++++.+...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~  163 (420)
T PRK09528         85 GLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERVSRRSGFEYGRARMWGSLGWALCAFIAGI  163 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHHHhhccccchhhHHhhhHHHHHHHHHHHH
Confidence            22211111111 111100000000112223333433333333333333 2223333335677888888888888888876


Q ss_pred             hh
Q 020441          290 IS  291 (326)
Q Consensus       290 ~~  291 (326)
                      +.
T Consensus       164 l~  165 (420)
T PRK09528        164 LF  165 (420)
T ss_pred             HH
Confidence            63

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.37  E-value=2.2e-05  Score=73.31  Aligned_cols=110  Identities=19%  Similarity=0.195  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhh
Q 020441          173 VGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQ  252 (326)
Q Consensus       173 ~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~  252 (326)
                      ++.+..++.+...+++++.|+++||+|||+ .+..+.+.........  ...++     ++..++..++.|++.+. .+.
T Consensus        56 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~g~~~~~-~~~  126 (408)
T PRK09874         56 SGLVFSITFLFSAIASPFWGGLADRKGRKI-MLLRSALGMGIVMVLM--GLAQN-----IWQFLILRALLGLLGGF-VPN  126 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhCcHH-HHHHHHHHHHHHHHHH--HHHhh-----HHHHHHHHHHHHHhhhh-HHh
Confidence            477888899999999999999999999985 6666655544433221  22232     24556667778887654 455


Q ss_pred             hHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          253 LSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       253 ~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      ....+.+.+|++ +..+.+.++....+|..+++.+...+.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  166 (408)
T PRK09874        127 ANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLA  166 (408)
T ss_pred             HHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777888765 466788888888888888888887653

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.35  E-value=8.7e-06  Score=76.88  Aligned_cols=121  Identities=21%  Similarity=0.148  Sum_probs=80.9

Q ss_pred             cccccch--hhHHHHHHHHHHHHHHHhhhhhhccC----CCChhhHHHHHHHHHHHHHHHHHhcccCCCCC-cchHHHHH
Q 020441          165 TPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTG----LPSITFIVSGGAIAQVVVFLWILINYSVTSGV-LGTLYPLI  237 (326)
Q Consensus       165 ~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~----~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~-~~~~~~~~  237 (326)
                      ++.+|++  .+|.++.+..+..++..|+.|.++||    +|||++.++.+.+...+..++.+  +.|+.+. ......++
T Consensus        27 ~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~  104 (437)
T TIGR00792        27 TDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF--TTPDFSATGKLVYAYI  104 (437)
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH--hCCCCCcchHHHHHHH
Confidence            4445554  78999999999999999999999997    57766666667665554443322  2332211 01133455


Q ss_pred             HHHHHhhhhHHhhhhhHhhHHhhccCC--chhhhhHHHHHHHHHHHHHHHHh
Q 020441          238 MAALLGIGDGVLNTQLSALLGILFKHD--TEGAFAQLKVWQCASIAVVFFIG  287 (326)
Q Consensus       238 ~~~l~G~~d~~~~~~~~~il~~~f~~~--~~~~fa~~~~~~~~g~~i~~~i~  287 (326)
                      ..++++++.+..+....++..++.+++  |....+..+....+|..++..+.
T Consensus       105 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~  156 (437)
T TIGR00792       105 TYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIV  156 (437)
T ss_pred             HHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667789999988888888988887543  44455666777777766655443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.35  E-value=1.2e-05  Score=77.02  Aligned_cols=119  Identities=10%  Similarity=-0.050  Sum_probs=85.8

Q ss_pred             ccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHH-HHH--hcccCCCCCcchHHHHHHHH
Q 020441          166 PALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL-WIL--INYSVTSGVLGTLYPLIMAA  240 (326)
Q Consensus       166 ~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~-~~~--l~~~~~~~~~~~~~~~~~~~  240 (326)
                      +.+|.  .+.+++...+.++..++.++.|++.||+|+|+ ++..+.+...+... ...  ....++     ....++..+
T Consensus        57 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~-~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~r~  130 (467)
T PRK09556         57 STYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQ-FLPFLLILSAICMLGFGASLGSGSVS-----LGLMIALWA  130 (467)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccc-hHHHHHHHHHHHHHHHHHHHhcccch-----HHHHHHHHH
Confidence            34554  47888889999999999999999999999995 65555444332221 111  112222     345666777


Q ss_pred             HHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          241 LLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       241 l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      +.|++.+...+....++.+.+|++ +..+.+.+....++|.+++..+...+
T Consensus       131 l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~  181 (467)
T PRK09556        131 LSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWG  181 (467)
T ss_pred             HHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHH
Confidence            889999988888889999999876 56688888888888888887776433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.35  E-value=1.2e-05  Score=76.82  Aligned_cols=117  Identities=14%  Similarity=-0.045  Sum_probs=83.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHh----ccc-CCCCCcchHHHHHHHHHHhhh
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI----NYS-VTSGVLGTLYPLIMAALLGIG  245 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l----~~~-~~~~~~~~~~~~~~~~l~G~~  245 (326)
                      .+.+++...+.++..+++++.|+++||+|||+ ++..+.++.....+....    ... ..++.......++.-++.|++
T Consensus        55 ~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~-~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~  133 (479)
T PRK10077         55 SLLGFCVASALIGCIIGGALGGYCSNRFGRRD-SLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG  133 (479)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhh
Confidence            36788889999999999999999999999996 666665554433222111    000 001100012345667899999


Q ss_pred             hHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhh
Q 020441          246 DGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       246 d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~  288 (326)
                      .+...+...++++|.+|++ |..+.+.+.....+|..+++.++.
T Consensus       134 ~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~  177 (479)
T PRK10077        134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNY  177 (479)
T ss_pred             HhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999976 566788888888888888776643

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.34  E-value=1.4e-05  Score=76.85  Aligned_cols=116  Identities=9%  Similarity=-0.027  Sum_probs=88.0

Q ss_pred             cccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhh
Q 020441          167 ALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  244 (326)
Q Consensus       167 ~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~  244 (326)
                      .+|.+  +.+.....+.++..+++++.|++.||+|||+ .+..+.+......+..  ...++     ++..++..++.|+
T Consensus        49 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~--~~~~~-----~~~l~~~~~l~G~  120 (496)
T PRK03893         49 EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRL-AMVISIVLFSVGTLAC--GFAPG-----YWTLFIARLVIGM  120 (496)
T ss_pred             HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-HHHHHHHHHHHHHHHH--HHHhH-----HHHHHHHHHHHHH
Confidence            44543  6778888888999999999999999999995 6666655544443321  22333     3556777889999


Q ss_pred             hhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          245 GDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       245 ~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      +.+...+....++.+.+|++ +..+++.+.....+|..+++.+...+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l  167 (496)
T PRK03893        121 GMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLV  167 (496)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999876 46678888888888888888877655

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.34  E-value=4.5e-05  Score=73.54  Aligned_cols=153  Identities=8%  Similarity=0.001  Sum_probs=91.6

Q ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHhhhhhhccCC-----CChhhHHH
Q 020441          132 LLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGL-----PSITFIVS  206 (326)
Q Consensus       132 ~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~-----g~~~~i~~  206 (326)
                      ..++||...+.-+.+.+|.......+..+.-+.......++++... ..+.. .++.+++|.+.||+     |||+..+.
T Consensus         8 ~~~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~-~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll   85 (491)
T PRK11010          8 IFQQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFS-LVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLL   85 (491)
T ss_pred             HHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHH-HHHHHHHHHHHHcccccCCCCchHHHH
Confidence            4456776666656667776666554444332222222333566542 22222 26789999999998     88853444


Q ss_pred             HHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHH
Q 020441          207 GGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFF  285 (326)
Q Consensus       207 ~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~  285 (326)
                      .+.+....+..... ..+|..   +.+...+..++.+++.+.......++..+.+|++ +..+.+.......+|..++..
T Consensus        86 ~~~i~~~~~~~~~a-~~~~~~---~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~  161 (491)
T PRK11010         86 ATQLLLLVAIAAMG-FLEPGT---QLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGG  161 (491)
T ss_pred             HHHHHHHHHHHHHH-HcCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHH
Confidence            45444433332211 122321   1345566677889999988889999999999855 555666777777777777765


Q ss_pred             Hhhhh
Q 020441          286 IGPYI  290 (326)
Q Consensus       286 i~~~~  290 (326)
                      +...+
T Consensus       162 l~~~l  166 (491)
T PRK11010        162 LALWL  166 (491)
T ss_pred             HHHHH
Confidence            55443

>PTZ00207 hypothetical protein; Provisional

Probab=98.34  E-value=4e-05  Score=74.88  Aligned_cols=128  Identities=9%  Similarity=0.073  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhc----cCC----CChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhH
Q 020441          176 AMAVYGAFDAICSLAAGRLT----TGL----PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDG  247 (326)
Q Consensus       176 ~~~~~gi~~~i~~~~~G~l~----d~~----g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~  247 (326)
                      ...+.++.+.+|....|.++    +|.    -+| ++++....+..+..+++++..+.       ..+++.+++.|++.+
T Consensus       396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~pr-t~~l~~~~~~~~~~lll~~~~p~-------~~L~~~~~lvg~~~G  467 (591)
T PTZ00207        396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPI-TIALFIPSVCIITMLTLFLTLPK-------AALPLPYFIAAFANG  467 (591)
T ss_pred             ehhhhhHHHHhhHHHHHHHHHHHHhhccccccch-hHHHHHHHHHHHHHHHHHHHCCc-------cHhHHHHHHHHHHhh
Confidence            45678889999999988654    222    122 23333322222333333334331       246888999999999


Q ss_pred             HhhhhhHhhHHhhccCCchhhhhHHHHHH---HHHHHH------HHHHhh-------hh-----hHHHHHHHHHHHHHHH
Q 020441          248 VLNTQLSALLGILFKHDTEGAFAQLKVWQ---CASIAV------VFFIGP-------YI-----SLQAMLIVMVVGICVA  306 (326)
Q Consensus       248 ~~~~~~~~il~~~f~~~~~~~fa~~~~~~---~~g~~i------~~~i~~-------~~-----~~~~~~~~~~~~~~~~  306 (326)
                      ...+....+..|+|.++-..   .||+..   -+|+-+      +..++.       ..     |...+..++.++++.+
T Consensus       468 ~~~~~~~~i~selFgk~~g~---~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g  544 (591)
T PTZ00207        468 FMAATIALVTRTIFAKDPAK---HYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLA  544 (591)
T ss_pred             HhHHHHHHHHHHHhccchHH---HhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHH
Confidence            99999999999999833233   444444   333322      222211       11     2455667777777777


Q ss_pred             HHHHHHHH
Q 020441          307 LVGILFLT  314 (326)
Q Consensus       307 ~~~~~~~~  314 (326)
                      .+.-.++.
T Consensus       545 ~~~s~~l~  552 (591)
T PTZ00207        545 FITSTYVH  552 (591)
T ss_pred             HHHHhhee
Confidence            77655553

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.33  E-value=1.9e-06  Score=79.04  Aligned_cols=110  Identities=13%  Similarity=0.091  Sum_probs=84.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhh
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN  250 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~  250 (326)
                      .+.+++...+.++..+++++.|++.||+|||+ ++..+.++..+..++.  .+.++     ++..++..++.|++.+...
T Consensus        30 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~g~~~~~~~  101 (379)
T TIGR00881        30 TDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV-FLPIGLILCAIVNLFF--GFSTS-----LWVMAALWALNGIFQGMGW  101 (379)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhhHHHHhhCCee-hhHHHHHHHHHHHHHH--HHhhh-----HHHHHHHHHHHHhhccccC
Confidence            47788889999999999999999999999995 6666665555443322  22233     3556777888899999999


Q ss_pred             hhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHH-HHhh
Q 020441          251 TQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVF-FIGP  288 (326)
Q Consensus       251 ~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~-~i~~  288 (326)
                      +..++++.+.+|++ +..+++..+..+.+|..+++ .+..
T Consensus       102 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  141 (379)
T TIGR00881       102 PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLF  141 (379)
T ss_pred             CchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHH
Confidence            99999999999975 56678888888888888887 3443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.32  E-value=4e-05  Score=73.60  Aligned_cols=116  Identities=10%  Similarity=0.048  Sum_probs=77.7

Q ss_pred             cccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHH
Q 020441          165 TPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALL  242 (326)
Q Consensus       165 ~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~  242 (326)
                      .+.+|.+  +.+.+...+.++..++.++.|++.||+|||+ ++..+.+......++  ..+.++     +...++..++.
T Consensus        63 ~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~-~~~~~~~~~~~~~~~--~~~~~s-----~~~l~~~r~l~  134 (476)
T PLN00028         63 RDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRY-GSAFLLMLTAPAVFC--MSLVSS-----ATGFIAVRFFI  134 (476)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHH--HHHhcC-----HHHHHHHHHHH
Confidence            3345553  6677777788888899999999999999985 655555444433322  222333     24455666788


Q ss_pred             hhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhh
Q 020441          243 GIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY  289 (326)
Q Consensus       243 G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~  289 (326)
                      |++.+...+ ....+++.+|++ +..+.+..+....+|.+++..+.+.
T Consensus       135 G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~  181 (476)
T PLN00028        135 GFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPL  181 (476)
T ss_pred             HHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888776543 455778999865 5778888877777777776655543

>TIGR00898 2A0119 cation transport protein

Probab=98.31  E-value=1.6e-05  Score=76.67  Aligned_cols=111  Identities=14%  Similarity=0.117  Sum_probs=86.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  251 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~  251 (326)
                      +.+++..++.++..+++++.|+++||+|||+ ++..+.++..+..+..  .+.++     ++..++..++.|++.+...+
T Consensus       128 ~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~-~~~~~~~~~~i~~~~~--~~~~~-----~~~~~~~r~l~G~~~~~~~~  199 (505)
T TIGR00898       128 KVDLTQSCFFVGVLLGSFVFGYLSDRFGRKK-VLLLSTLVTAVSGVLT--AFSPN-----YTVFLVFRLLVGMGIGGIWV  199 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhhhhccchH-HHHHHHHHHHHHHHHH--HHccc-----HHHHHHHHHHHHhhccchHH
Confidence            5688889999999999999999999999995 6666665555443322  23343     35667778899999999999


Q ss_pred             hhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          252 QLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       252 ~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ...+++.|.+|++ +..+.+.+....++|..+++.++..+
T Consensus       200 ~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  239 (505)
T TIGR00898       200 QAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI  239 (505)
T ss_pred             HHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999876 55566677888888888888776544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.28  E-value=1.2e-05  Score=73.85  Aligned_cols=112  Identities=12%  Similarity=0.093  Sum_probs=90.4

Q ss_pred             ccchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhH
Q 020441          168 LGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDG  247 (326)
Q Consensus       168 lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~  247 (326)
                      +..++.|++..++.++..++-.+.|.++||.++|. .+.+|.++..++-++  +-+.++     .....++.++-|..++
T Consensus        61 lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~-fm~~gLilsai~nil--~Gfs~s-----~~~~~~l~~lng~fQg  132 (448)
T COG2271          61 LSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY-FMAFGLILSAIVNIL--FGFSPS-----LFLFAVLWVLNGWFQG  132 (448)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce-eehHHHHHHHHHHHH--HhhhhH-----HHHHHHHHHHHHHHhc
Confidence            34458899999999999999999999999999884 677777776655432  233332     3456677788899999


Q ss_pred             HhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHh
Q 020441          248 VLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIG  287 (326)
Q Consensus       248 ~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~  287 (326)
                      .--+.....++..||.+ |....|+.|..+++|+++.+.+.
T Consensus       133 ~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~  173 (448)
T COG2271         133 MGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA  173 (448)
T ss_pred             CCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence            88899999999999865 67789999999999999999887

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.24  E-value=7.2e-06  Score=74.24  Aligned_cols=111  Identities=14%  Similarity=0.096  Sum_probs=83.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHH-HHHHhhhhHHhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM-AALLGIGDGVLN  250 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~l~G~~d~~~~  250 (326)
                      ..|++-..+++.+.+.++.+|+++||+||| +++..+.+..++....  .....+     . .+++. -++.|+..+- -
T Consensus        69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRk-pvll~c~~~va~s~ll--~~~S~~-----F-~afv~aR~l~Gi~kgn-l  138 (451)
T KOG2615|consen   69 YAGFLGSSFSILQFISSPLWGCLSDRYGRK-PVLLACLIGVALSYLL--WALSRN-----F-AAFVLARFLGGIFKGN-L  138 (451)
T ss_pred             hhhhHhhHHHHHHHHhhhhhhhhhhhhCch-HHHHHHHHHHHHHHHH--HHHHHH-----H-HHHHHHHHhhhhccCc-h
Confidence            568888999999999999999999999999 5877776665543321  111111     1 24444 5677777764 4


Q ss_pred             hhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhhH
Q 020441          251 TQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYISL  292 (326)
Q Consensus       251 ~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~~  292 (326)
                      +..-++++|.++++ +..+++.....-++|.-+++.++.++..
T Consensus       139 ~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  139 SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            67789999999876 5678999999999999999999888875

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.24  E-value=2.2e-05  Score=74.91  Aligned_cols=111  Identities=11%  Similarity=0.061  Sum_probs=77.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHH-HHHHhhhhHHhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM-AALLGIGDGVLN  250 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~l~G~~d~~~~  250 (326)
                      ..++....+.+...+++++.|++.||+|||+ +++.+.++.....+.  ..+.++     .+..++. .++.|++.+...
T Consensus        55 ~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~-~l~~~~~~~~~~~~~--~~~~~~-----~~~l~~~~~~l~G~~~~~~~  126 (455)
T TIGR00892        55 ETAWISSIMLAVLYAGGPISSILVNRFGCRP-VVIAGGLLASLGMIL--ASFSSN-----VIELYLTAGFITGLGLAFNF  126 (455)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHcCchH-HHHhhHHHHHHHHHH--HHHhhh-----HHHHHHHHHHHHHhcchhhh
Confidence            5667777777778889999999999999995 666665554433322  122233     2333333 356688887665


Q ss_pred             hhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          251 TQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       251 ~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .....++.+.+|+++..+.+..+....+|..+++.+...+
T Consensus       127 ~~~~~~~~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l  166 (455)
T TIGR00892       127 QPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYL  166 (455)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            5666788888987777788899999999888887776655

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.23  E-value=0.00043  Score=62.64  Aligned_cols=246  Identities=13%  Similarity=0.117  Sum_probs=131.8

Q ss_pred             hhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhh
Q 020441            3 PASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLL   82 (326)
Q Consensus         3 ~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~   82 (326)
                      .+.++.|.|.++..+---..+=+.=           +++.+..+|++-...+.+..+|..++.=+-+..     .+||.-
T Consensus       104 ~gt~l~G~gIav~nVLLPslIK~~F-----------pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~-----~gW~~a  167 (395)
T COG2807         104 LGTLLAGAGIAVINVLLPSLIKRDF-----------PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS-----GGWRGA  167 (395)
T ss_pred             HHHHHHHhhHHHHHHhhhHHHHhhc-----------ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-----ccHHHH
Confidence            3455566666655544333332222           356777777765555555555554443332211     468754


Q ss_pred             HHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHH---hhc
Q 020441           83 FIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVW---AEF  159 (326)
Q Consensus        83 f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~---~~~  159 (326)
                      .......+.++  +..++|+..+++....+.+.           ++..++++||....+   .+|.|++..-++   +-+
T Consensus       168 L~~WAl~allA--l~~WlPq~~r~~~~~~~~~~-----------~~~~~vw~~~~aW~v---tLfmGlqS~~~Y~~~~WL  231 (395)
T COG2807         168 LGFWALLALLA--LLIWLPQALREQAASIATKL-----------VSVRKVWRSPLAWQV---TLFMGLQSLLYYIVIGWL  231 (395)
T ss_pred             HHHHHHHHHHH--HHHHhhhccccccccccccc-----------ccccccccCchhHHH---HHHHHhhHHHHHHHHHHH
Confidence            44333333332  24566664332111101000           111235677765543   466776654443   345


Q ss_pred             ccccccccccchhhHHHHHHHHHHHHHHHhhhhhhccCC-CChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHH
Q 020441          160 TKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTGL-PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIM  238 (326)
Q Consensus       160 ~~~~~~~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~-g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~  238 (326)
                      ++.++++.++-.+.|....+..+.+...+...-.+.+|. .+| ++......+....++-.  .+.|..      ..+.-
T Consensus       232 P~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r-~~~~~~~~~~l~G~~G~--~~~P~~------~~~lw  302 (395)
T COG2807         232 PAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQR-PLVVLALLLMLVGLVGL--LLAPGQ------LPILW  302 (395)
T ss_pred             HHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHH--HHhhhh------HHHHH
Confidence            666666666666778777788888888877777776643 445 45544444444433221  233432      11222


Q ss_pred             HHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHH---HHHHHHHhhhh
Q 020441          239 AALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCAS---IAVVFFIGPYI  290 (326)
Q Consensus       239 ~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g---~~i~~~i~~~~  290 (326)
                      .+++|++.+...+..-.++....++.++ +=+...+.|++|   ++.++.+..++
T Consensus       303 ~~llG~G~G~~F~laL~li~~rs~~a~~-Aa~LSgmaQg~GYllAa~GP~l~G~l  356 (395)
T COG2807         303 ALLLGLGQGGAFPLALTLILLRSSDAAI-AAALSGMAQGVGYLLAAFGPWLFGFL  356 (395)
T ss_pred             HHHHhCccchHHHHHHHHHHhhcCChHH-HHHHHHHhhhhhHHHHhhhhhhHhHH
Confidence            5888999888888888888777666543 333555566555   55566666555

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.22  E-value=4.5e-05  Score=73.19  Aligned_cols=119  Identities=17%  Similarity=0.144  Sum_probs=80.7

Q ss_pred             cccccch--hhHHHHHHHHHHHHHHHhhhhhhcc----CCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCc-chHHHHH
Q 020441          165 TPALGVS--GVGGAMAVYGAFDAICSLAAGRLTT----GLPSITFIVSGGAIAQVVVFLWILINYSVTSGVL-GTLYPLI  237 (326)
Q Consensus       165 ~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d----~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~-~~~~~~~  237 (326)
                      ++.+|++  .+|.++.+.-+..++..|+.|.++|    |+|||++.++.+.+...+.+.+++  .+|+.+.. .....++
T Consensus        34 t~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf--~~p~~~~~~~~~~~~~  111 (473)
T PRK10429         34 TDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLF--SAHLFEGTAQYVFVCV  111 (473)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHH--cCCCCCccHHHHHHHH
Confidence            3445554  7889999999999999999999999    558866777777776665543322  23322110 1233556


Q ss_pred             HHHHHhhhhHHhhhhhHhhHHhhccCC--chhhhhHHHHHHHHHHHHHHH
Q 020441          238 MAALLGIGDGVLNTQLSALLGILFKHD--TEGAFAQLKVWQCASIAVVFF  285 (326)
Q Consensus       238 ~~~l~G~~d~~~~~~~~~il~~~f~~~--~~~~fa~~~~~~~~g~~i~~~  285 (326)
                      .+++++++.+..+..-.++..++.++.  |...++.-+.+..+|+.+...
T Consensus       112 ~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~  161 (473)
T PRK10429        112 TYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAG  161 (473)
T ss_pred             HHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            677889999999999999999998654  343444546666666554433

>PRK11462 putative transporter; Provisional

Probab=98.21  E-value=8.2e-05  Score=71.13  Aligned_cols=120  Identities=23%  Similarity=0.182  Sum_probs=84.2

Q ss_pred             cccccch--hhHHHHHHHHHHHHHHHhhhhhhccC----CCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcc-hHHHHH
Q 020441          165 TPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTG----LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLG-TLYPLI  237 (326)
Q Consensus       165 ~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~----~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~-~~~~~~  237 (326)
                      ++.+|++  .+|.++++.-+..++.-|+.|.++||    +|||+|-++.+.+...+..++++  ..|+.+... ....++
T Consensus        37 t~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf--~~p~~s~~~~~~y~~~  114 (460)
T PRK11462         37 TDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAY--STPDLSMNGKMIYAAI  114 (460)
T ss_pred             HHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHH--hCCCCCcchHHHHHHH
Confidence            3445654  78888999999999999999999995    57776677777666655544332  234321111 234566


Q ss_pred             HHHHHhhhhHHhhhhhHhhHHhhccCCc--hhhhhHHHHHHHHHHHHHHHH
Q 020441          238 MAALLGIGDGVLNTQLSALLGILFKHDT--EGAFAQLKVWQCASIAVVFFI  286 (326)
Q Consensus       238 ~~~l~G~~d~~~~~~~~~il~~~f~~~~--~~~fa~~~~~~~~g~~i~~~i  286 (326)
                      .++++.++..+.+..-.++.+++.+|.+  ....+.......+|..++..+
T Consensus       115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~  165 (460)
T PRK11462        115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVL  165 (460)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888999999999999999999998653  445556666667766665444

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.21  E-value=4.8e-05  Score=70.58  Aligned_cols=112  Identities=14%  Similarity=0.030  Sum_probs=79.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhh
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN  250 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~  250 (326)
                      ++.+++...+.++..+++++.|.+.||+|||+ ++............ .. ...++     +...++.-++.|++.+.. 
T Consensus        26 ~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~-~~~~~~~~~~~~~~-~~-~~~~~-----~~~l~~~R~l~G~g~~~~-   96 (368)
T TIGR00903        26 EELGLLAITYPAAFLALTIPSGLLLDRAFKRW-FLFGSLATFAAAAG-RL-LDPFN-----YEWLLACQLLAALGQPFL-   96 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHH-HH-HHhcc-----HHHHHHHHHHHHhHhHHH-
Confidence            36788888889999999999999999999885 54433322222211 11 11122     355677778889988864 


Q ss_pred             hhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          251 TQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       251 ~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      ......+.+.+|++ |..+.+.......+|..+++.+...+.
T Consensus        97 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~  138 (368)
T TIGR00903        97 LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY  138 (368)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445568888865 466888999999999999998887774

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.21  E-value=3e-07  Score=84.99  Aligned_cols=114  Identities=15%  Similarity=0.174  Sum_probs=93.1

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHh
Q 020441          170 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL  249 (326)
Q Consensus       170 ~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~  249 (326)
                      .+..|++..++-++.++.+|+.|.+.||+.|+. ++.+|..+-..+.+..  .+..+     ++...++-.+.|+|.+.+
T Consensus        67 ~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~-v~~vG~~iW~~Av~~~--~fs~~-----Fwq~~l~R~~vGiGeAs~  138 (493)
T KOG1330|consen   67 DSELGLLQTVFIVVFMIASPLFGYLADRYNRKR-VIAVGIFIWTLAVFAS--GFSNH-----FWQVLLCRGFVGIGEASY  138 (493)
T ss_pred             chhccchhHHHHHHHHHHHHHHHHHHhhcCcce-EEeeHHHHHHHHHHHH--HHHHH-----HHHHHHHHHHhccchhhh
Confidence            346678888999999999999999999999995 7777766555443221  11111     467778888999999999


Q ss_pred             hhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          250 NTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       250 ~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      .+..++++++.||++ |..+|+++++....|++++|.+++.+.
T Consensus       139 ~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va  181 (493)
T KOG1330|consen  139 SPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVA  181 (493)
T ss_pred             cccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeec
Confidence            999999999999987 577999999999999999999998774

>PRK09848 glucuronide transporter; Provisional

Probab=98.21  E-value=7.1e-05  Score=71.20  Aligned_cols=99  Identities=17%  Similarity=0.257  Sum_probs=64.5

Q ss_pred             cccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCC----CChhhHHHHHHHHHHHHHHHHHhcccCC-CCCcchHHHHH
Q 020441          165 TPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGL----PSITFIVSGGAIAQVVVFLWILINYSVT-SGVLGTLYPLI  237 (326)
Q Consensus       165 ~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~----g~~~~i~~~g~i~~~~~~~~~~l~~~~~-~~~~~~~~~~~  237 (326)
                      ++.+|.  ..+|.+..+..+..++..++.|+++||.    |||++.+..+.+.......+.+. .+.+ ++.......+.
T Consensus        36 ~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  114 (448)
T PRK09848         36 TDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFW-VPTDWSHSSKVVYAYL  114 (448)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHh-CcCCCCcchHHHHHHH
Confidence            344454  4789999999999999999999999985    66665555555544433332221 1111 11001123455


Q ss_pred             HHHHHhhhhHHhhhhhHhhHHhhccCC
Q 020441          238 MAALLGIGDGVLNTQLSALLGILFKHD  264 (326)
Q Consensus       238 ~~~l~G~~d~~~~~~~~~il~~~f~~~  264 (326)
                      ..++++++.+..++...++..++.++.
T Consensus       115 ~~~~~~~~~~~~~~~~~al~~~~~~~~  141 (448)
T PRK09848        115 TYMGLGLCYSLVNIPYGSLATAMTQQP  141 (448)
T ss_pred             HHHHHHHHHHHhcccHhhhhhhhcCCH
Confidence            567889999999988888888777664

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.18  E-value=0.00011  Score=70.99  Aligned_cols=115  Identities=11%  Similarity=-0.065  Sum_probs=83.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  251 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~  251 (326)
                      ..+.+...+.++..+++++.|++.||+|||+ .+..+.++..+..++..... ...+.......++.-++.|++.+...+
T Consensus        57 ~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~-~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~r~l~G~~~g~~~~  134 (502)
T TIGR00887        57 VSAAVNGSASIGTLAGQLFFGWLADKLGRKR-VYGMELIIMIIATVASGLSP-GSSPKSVMATLCFWRFWLGVGIGGDYP  134 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHcc-CcccchHHHHHHHHHHHHHHHHhhhhH
Confidence            5577888899999999999999999999995 66666555554433222221 111110123456777889999999999


Q ss_pred             hhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhh
Q 020441          252 QLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       252 ~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~  288 (326)
                      ..+.++.|.+|.+ |..+.+.......+|..++..+..
T Consensus       135 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~  172 (502)
T TIGR00887       135 LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL  172 (502)
T ss_pred             HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999976 566778888888888877776654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.18  E-value=0.00016  Score=67.53  Aligned_cols=142  Identities=11%  Similarity=0.040  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHH
Q 020441          142 IPLFAYSGLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWI  219 (326)
Q Consensus       142 ~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~  219 (326)
                      ....+..+...++....++. +..+.+|.+  ++|+......+...+.+++.|.+.||+|+|+.++..+.+...+.... 
T Consensus        21 ~~~~~~~~~~~~~~~p~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~~~~~~~~~~~-   98 (393)
T PRK15011         21 LIVAFLTGIAGALQTPTLSI-FLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTL-   98 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH-
Confidence            33456666665555444332 334455643  67777655556555555565555999998863444443332222211 


Q ss_pred             HhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chh-hh-hHHHHHHHHHHHHHHHHhhhhh
Q 020441          220 LINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEG-AF-AQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       220 ~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~-~f-a~~~~~~~~g~~i~~~i~~~~~  291 (326)
                       ..+.++     ++..++...+.+...+...+...++..+..|++ ++. .+ +..+..+++|..+++.+...+.
T Consensus        99 -~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~  167 (393)
T PRK15011         99 -FAWNRN-----YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALA  167 (393)
T ss_pred             -HHHhhH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence             122232     233334444444444555666677776655543 332 34 4778888899999988887664

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.17  E-value=7e-05  Score=67.80  Aligned_cols=124  Identities=6%  Similarity=-0.125  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhH
Q 020441          178 AVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALL  257 (326)
Q Consensus       178 ~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il  257 (326)
                      +...+.+.-|.++.+.+.||+|||+ .+....++..++.++.+....++       ...+..+..-.+-++-....|..-
T Consensus       388 litslaefPGlLIt~~iverlGRKk-TMal~l~~f~iflfll~~c~~rn-------~~tvllf~arafisg~fqvaYvYt  459 (528)
T KOG0253|consen  388 LITSLAEFPGLLITGVIVERLGRKK-TMALSLILFGIFLFLLTTCKTRN-------AYTVLLFTARAFISGAFQVAYVYT  459 (528)
T ss_pred             HHHHHhhCCchhHHHHHHHHhcchh-HHHHHHHHHHHHHHHHHHhcCcc-------hhHHHHHHHHHHHhchheEEEEec
Confidence            4556677889999999999999997 66555554444333323233333       111111222222333345668888


Q ss_pred             HhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHH
Q 020441          258 GILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI--SLQAMLIVMVVGICVALVG  309 (326)
Q Consensus       258 ~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~--~~~~~~~~~~~~~~~~~~~  309 (326)
                      -|.||+. |..+.+.-....=+|+-++++++-..  ++..++.+.-+.++++.++
T Consensus       460 PEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIa  514 (528)
T KOG0253|consen  460 PEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIA  514 (528)
T ss_pred             CcccchhhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHH
Confidence            8999987 57777766666667778888777222  2344555555555555544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.16  E-value=1.4e-05  Score=76.25  Aligned_cols=114  Identities=9%  Similarity=-0.017  Sum_probs=85.9

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  251 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~  251 (326)
                      ..|.+...+.++..+++++.|++.||+|+|+ ++..+.++..+..++......++     ....++..++.|++.+...+
T Consensus        77 ~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~r~~~G~~~~~~~~  150 (465)
T TIGR00894        77 LQGLILSSHFYGQIIIQIPVGYLAGKYVFKW-SIGIGMFLSSVISIVIPWAAGGG-----IALVVFCRVIQGLAQGSVSP  150 (465)
T ss_pred             HhhHHHHHHHHHHHHHHcchHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHcC-----chHHHHHHHHHHHhcccchh
Confidence            5677788888999999999999999999995 66555544433322211122222     24567778899999999999


Q ss_pred             hhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          252 QLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       252 ~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      ....++.+.+|++ +..+.+.+.....+|..+++.+...+.
T Consensus       151 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~  191 (465)
T TIGR00894       151 ATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLC  191 (465)
T ss_pred             hHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999965 576888999989999999888877654

>TIGR00901 2A0125 AmpG-related permease

Probab=98.13  E-value=0.0001  Score=67.67  Aligned_cols=114  Identities=10%  Similarity=-0.054  Sum_probs=72.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCC-----CChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhh
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGL-----PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG  245 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~-----g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~  245 (326)
                      +++++.... ++...+ .+++|++.||+     |||++.+..+.+.......... ...+..   +.+..+...++.+++
T Consensus        23 ~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~-~~~~~~---~l~~l~~~~~~~~~~   96 (356)
T TIGR00901        23 KTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS-FLVPST---DLPLLAGLAFLIAFF   96 (356)
T ss_pred             HHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH-cCCcch---hHHHHHHHHHHHHHH
Confidence            356665433 444444 88999999997     7876444555544443322211 122221   124456667778888


Q ss_pred             hHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          246 DGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       246 d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .+.......+++.+.+|++ +..+.+......++|..++..+...+
T Consensus        97 ~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l  142 (356)
T TIGR00901        97 SATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVL  142 (356)
T ss_pred             HHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988899999999999765 45567777777777777777766544

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=98.10  E-value=0.00019  Score=66.73  Aligned_cols=112  Identities=7%  Similarity=0.002  Sum_probs=77.2

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhccCCCChhh---HHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhh
Q 020441          170 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITF---IVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  246 (326)
Q Consensus       170 ~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~---i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d  246 (326)
                      ..++|+...++.+...+++++.|++.||++|+..   .+..+...   .... +....++     .+..++..++.|++.
T Consensus        38 ~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~---~~~~-~~~~~~~-----~~~l~i~~~l~g~~~  108 (382)
T PRK11128         38 PETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL---FAVA-FWFGAHS-----FWLLFVAIGLFNLFF  108 (382)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH---HHHH-HHHhccc-----HHHHHHHHHHHHHHH
Confidence            3488999999999999999999999999998421   22111111   1111 1122222     355566677788888


Q ss_pred             HHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          247 GVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       247 ~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +...+...++..+. +++++.+++..+...++|.++++.+...+.
T Consensus       109 ~~~~~~~~a~~~~~-~~~~~~a~~~~~~~~~lg~~igp~lgg~l~  152 (382)
T PRK11128        109 SPLVPLTDALANTW-QKQIGLDYGKVRLWGSIAFVIGSALTGKLV  152 (382)
T ss_pred             cccccHHHHHHHHH-HhhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            88888777766654 555666788889999999999999987664

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.08  E-value=5.3e-05  Score=71.16  Aligned_cols=132  Identities=22%  Similarity=0.255  Sum_probs=89.1

Q ss_pred             HHHHHhhhhhhccCC-CChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhcc
Q 020441          184 DAICSLAAGRLTTGL-PSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFK  262 (326)
Q Consensus       184 ~~i~~~~~G~l~d~~-g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~  262 (326)
                      .=....++|+++||+ |+|+ .+..|+++.++..+.  +..++..   .+...++..++.++|.+.+.+...+++++++|
T Consensus        74 VY~t~i~GG~laDr~LG~~~-tI~lGail~~iGh~~--L~~~~~~---~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~  147 (498)
T COG3104          74 VYLTPIIGGWLADRVLGTRR-TIVLGAILMAIGHLV--LAISSVS---GPGGLYIGLALIIVGTGLFKPNISSLLGELYP  147 (498)
T ss_pred             HHHHHHHHHHHHHHhcchhH-HHHHHHHHHHHHHHH--Hhccccc---cccHHHHHHHHHHhccccccccHHHHHHHhcC
Confidence            334667789999996 7775 566777776665543  2333211   12456777788899999999999999999998


Q ss_pred             CC---chhhhhHHHHHHHHHHHHHHHHhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 020441          263 HD---TEGAFAQLKVWQCASIAVVFFIGPYISLQAM----LIVMVVGICVALVGILFLTIQVEKAF  321 (326)
Q Consensus       263 ~~---~~~~fa~~~~~~~~g~~i~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (326)
                      ++   +..+|+.+-..-++|+.+++.+.+++.....    .....+-..++.+.|....++.+.+.
T Consensus       148 ~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~  213 (498)
T COG3104         148 KDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIG  213 (498)
T ss_pred             CCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCC
Confidence            53   3568998888888999999999888753321    12222334555666655555554444

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=98.06  E-value=0.00018  Score=66.99  Aligned_cols=115  Identities=10%  Similarity=-0.056  Sum_probs=75.7

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHh
Q 020441          170 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL  249 (326)
Q Consensus       170 ~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~  249 (326)
                      ..++++....+.+...+++++.|.+.||.+|+........+........ +....++     ++..++..++.|.+.+..
T Consensus        38 ~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~-----~~~l~~~~~l~~~~~~~~  111 (382)
T TIGR00902        38 EEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAA-FSAGAHN-----AWLLFIAIGLFALFFSAG  111 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH-HHHhhhh-----HHHHHHHHHHHHHHHccc
Confidence            3488999999999999999999999999987531111111111111111 1122333     355556666677777777


Q ss_pred             hhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          250 NTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       250 ~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      .+...++..+ +++++..+++..+.+.++|..+++.+...+.
T Consensus       112 ~p~~~al~~~-~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~  152 (382)
T TIGR00902       112 MPIGDALANT-WQKQFGLDYGKVRLIGSAAFIIGSALFGGLI  152 (382)
T ss_pred             hhHHHHHHHH-HHHHcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            7777776644 4555566899999999999999998876664

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.06  E-value=0.00011  Score=71.50  Aligned_cols=97  Identities=16%  Similarity=0.113  Sum_probs=66.3

Q ss_pred             cccccch-hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHh
Q 020441          165 TPALGVS-GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG  243 (326)
Q Consensus       165 ~~~lg~~-~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G  243 (326)
                      ...+|-+ ...++.....+...++.++.||++|.+||| .+++.+.++..+..+.  ..-.++     ........++.|
T Consensus        71 ~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr-~~~i~g~~l~vvG~Iv--~atA~~-----~~~~iag~~l~G  142 (599)
T PF06609_consen   71 NADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRR-YFFIIGSLLGVVGSIV--CATAQN-----MNTFIAGMVLYG  142 (599)
T ss_pred             HHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcch-HHHHHHHHHHHhHHHH--hhcCCc-----HHHHHHHHHHHH
Confidence            3445543 556667778888999999999999999999 4777777776655442  122222     244566678889


Q ss_pred             hhhHHhhhhhHhhHHhhccCC-chhhhh
Q 020441          244 IGDGVLNTQLSALLGILFKHD-TEGAFA  270 (326)
Q Consensus       244 ~~d~~~~~~~~~il~~~f~~~-~~~~fa  270 (326)
                      ++.+.. ...+..++|+.|.+ |..+.+
T Consensus       143 vgaG~~-~~~~~~isEl~p~k~R~~~~~  169 (599)
T PF06609_consen  143 VGAGVQ-ELAALAISELVPNKWRGLGLA  169 (599)
T ss_pred             HhhHHH-HHHHHHHHHhcccchhhhHhH
Confidence            986554 45577789999976 443444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.05  E-value=0.00035  Score=66.10  Aligned_cols=107  Identities=9%  Similarity=-0.076  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCc---chHHHHHHHHHHhhhhHHhhhhhH
Q 020441          178 AVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVL---GTLYPLIMAALLGIGDGVLNTQLS  254 (326)
Q Consensus       178 ~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~l~G~~d~~~~~~~~  254 (326)
                      ....++..++++++|+++||+|||+ .+..+.++.....+..  ...|+....   .+....+.-++.|++.+...+...
T Consensus        70 ~~~~~~~~ig~~~~G~l~Dr~Grr~-~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~  146 (432)
T PRK10406         70 AAGFLMRPIGGWLFGRIADKHGRKK-SMLISVCMMCFGSLVI--ACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSA  146 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHHHHHHH--hhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHH
Confidence            3344455599999999999999996 6666655554333221  222321100   012355667889999999999999


Q ss_pred             hhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHh
Q 020441          255 ALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIG  287 (326)
Q Consensus       255 ~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~  287 (326)
                      +++.|.+|++ |....+.....+..|..++..+.
T Consensus       147 ~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~  180 (432)
T PRK10406        147 TYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVV  180 (432)
T ss_pred             HHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999866 45456677777777766666553

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.05  E-value=0.00015  Score=66.92  Aligned_cols=103  Identities=9%  Similarity=-0.028  Sum_probs=70.1

Q ss_pred             HHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcc---hHHHHHHHHHHhhhhHHhhhhhHhhHHhh
Q 020441          184 DAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLG---TLYPLIMAALLGIGDGVLNTQLSALLGIL  260 (326)
Q Consensus       184 ~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~l~G~~d~~~~~~~~~il~~~  260 (326)
                      ..+++++.|++.||+|||+ .+..+.++........  ...++.+...   +...++..++.|++.+...+..+.++.+.
T Consensus        48 ~~i~~~~~G~l~dr~g~r~-~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~  124 (394)
T TIGR00883        48 RPLGAIVFGHFGDRIGRKK-TLVITLLMMGIGTLLI--GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEY  124 (394)
T ss_pred             hhhHHHHhhhhhhhhhhHH-HHHHHHHHHHHHHHHH--hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhc
Confidence            3578899999999999995 6666666555443221  2222211000   01345556888999998888889999999


Q ss_pred             ccCC-chhhhhHHHHHHHHHHHHHHHHhhh
Q 020441          261 FKHD-TEGAFAQLKVWQCASIAVVFFIGPY  289 (326)
Q Consensus       261 f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~  289 (326)
                      +|++ |....+.......+|..++..+...
T Consensus       125 ~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~  154 (394)
T TIGR00883       125 APPGKRGFYGSFQQVGAPVGLLLAALTVLL  154 (394)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9865 4556778888888888877766543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09669 putative symporter YagG; Provisional

Probab=98.05  E-value=7.3e-05  Score=71.03  Aligned_cols=118  Identities=19%  Similarity=0.139  Sum_probs=78.2

Q ss_pred             ccccch--hhHHHHHHHHHHHHHHHhhhhhhccC----CCChhhHHHHHHHHHHHHHHHHHhcccCCCCC-cchHHHHHH
Q 020441          166 PALGVS--GVGGAMAVYGAFDAICSLAAGRLTTG----LPSITFIVSGGAIAQVVVFLWILINYSVTSGV-LGTLYPLIM  238 (326)
Q Consensus       166 ~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~----~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~-~~~~~~~~~  238 (326)
                      +.+|++  .+|.+..+.-+..++..|+.|.++||    +|||++.++.+.+...+...+.+  +.|+.+. ......++.
T Consensus        38 ~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f--~~p~~~~~~~~~~~~~~  115 (444)
T PRK09669         38 DVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTF--YTPDFGATGKIIYACVT  115 (444)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHH--hCCCCCcchHHHHHHHH
Confidence            345554  78999999999999999999999998    67766666667665554443322  2333211 112345566


Q ss_pred             HHHHhhhhHHhhhhhHhhHHhhccCC--chhhhhHHHHHHHHHHHHHHH
Q 020441          239 AALLGIGDGVLNTQLSALLGILFKHD--TEGAFAQLKVWQCASIAVVFF  285 (326)
Q Consensus       239 ~~l~G~~d~~~~~~~~~il~~~f~~~--~~~~fa~~~~~~~~g~~i~~~  285 (326)
                      +++++.+.+..+....++.+++.+++  |....+.......+|..++..
T Consensus       116 ~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~  164 (444)
T PRK09669        116 YILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSV  164 (444)
T ss_pred             HHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77888888889988889999988654  333344555555666555544

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=98.03  E-value=9.3e-07  Score=85.72  Aligned_cols=188  Identities=16%  Similarity=0.176  Sum_probs=3.0

Q ss_pred             CchhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCC---C-----
Q 020441            1 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDD---K-----   72 (326)
Q Consensus         1 li~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~---~-----   72 (326)
                      ++.+.++.|+|++++|+---+|+-|+.++          ++-+.|.|+.++...+|-.+|-+++...++..   +     
T Consensus       144 f~~gq~l~GiG~~pl~tLG~tYiDDnv~~----------~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~  213 (539)
T PF03137_consen  144 FILGQLLIGIGATPLYTLGITYIDDNVSK----------KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD  213 (539)
T ss_dssp             --------SSS---------------------------------------------------------------------
T ss_pred             HHHHHHHHhccccCCccceeeeecccccc----------ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence            36788999999999999999999999994          57789999999988888888888877655421   0     


Q ss_pred             --CC----CCC--CchhhHHHHHHHHHHHHHHHHHccCCcccc------cc----ch--hhh----chh----hhhHHHH
Q 020441           73 --GG----STS--GTTLLFIVFLGVITLGTILMCFLRKEEDKG------EK----ET--ADA----SVN----FYSYLVS  124 (326)
Q Consensus        73 --~~----~~~--~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~------~~----~~--~~~----~~~----~~~~~~~  124 (326)
                        ..    +.|  -|-.=|++..++.++..+..++.|+..+++      ++    ++  .++    +..    .....++
T Consensus       214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  293 (539)
T PF03137_consen  214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKD  293 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhh
Confidence              00    111  244456555555555555555555432211      00    00  000    000    0123556


Q ss_pred             HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccch--hhHHHH-HHHHHHHHHHHhhhhhhccCCC
Q 020441          125 LSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS--GVGGAM-AVYGAFDAICSLAAGRLTTGLP  199 (326)
Q Consensus       125 ~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~--~~~~~~-~~~gi~~~i~~~~~G~l~d~~g  199 (326)
                      ..+.+.++++||-.++..-.........+= +..|.+.|.....+.+  ...++. .+.--+.++|.+++|.+.+|++
T Consensus       294 f~~~l~~Ll~Np~f~~~~la~~~~~~~~~G-~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~k  370 (539)
T PF03137_consen  294 FPKALKRLLTNPVFMCLILAGVFESFIVSG-FATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFK  370 (539)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEec
Confidence            666666677777665443221111111111 1345555666666654  221111 1111134466677777776653

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.02  E-value=2.5e-05  Score=73.80  Aligned_cols=123  Identities=18%  Similarity=0.176  Sum_probs=85.3

Q ss_pred             cccccch--hhHHHHHHHHHHHHHHHhhhhhhcc----CCCChhhHHHHHHHHHHHHHHHHHhcccC-CCCCc-chHHHH
Q 020441          165 TPALGVS--GVGGAMAVYGAFDAICSLAAGRLTT----GLPSITFIVSGGAIAQVVVFLWILINYSV-TSGVL-GTLYPL  236 (326)
Q Consensus       165 ~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d----~~g~~~~i~~~g~i~~~~~~~~~~l~~~~-~~~~~-~~~~~~  236 (326)
                      ++.+|++  .++.++.+.-+..++..|+.|.++|    |+|||+|.++.|.+...+.+++++ .-+| +.+.. .....+
T Consensus        29 ~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf-~~~p~~~~~~~~~~~~~  107 (428)
T PF13347_consen   29 TDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLF-SPPPAGLSFTAKLVWLF  107 (428)
T ss_pred             HHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhh-ccccchhhhhhHHHHHH
Confidence            4445654  7788899999999999999999999    789887777788877776655433 1113 21110 112346


Q ss_pred             HHHHHHhhhhHHhhhhhHhhHHhhccCC--chhhhhHHHHHHHHHHHHHHHHhh
Q 020441          237 IMAALLGIGDGVLNTQLSALLGILFKHD--TEGAFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       237 ~~~~l~G~~d~~~~~~~~~il~~~f~~~--~~~~fa~~~~~~~~g~~i~~~i~~  288 (326)
                      +..+++.++.+..+....++..++.+++  |....+.-+....+|..+...+.+
T Consensus       108 ~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~  161 (428)
T PF13347_consen  108 VFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAP  161 (428)
T ss_pred             HHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            7778889999999999999999999864  333444556667777755444444

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.98  E-value=0.00067  Score=64.06  Aligned_cols=156  Identities=19%  Similarity=0.195  Sum_probs=97.0

Q ss_pred             cccccch--hhHHHHHHHHHHHHHHHhhhhhhccC----CCChhhHHHHHHHHHHHHHHHHHhcccCCCCC-cchHHHHH
Q 020441          165 TPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTG----LPSITFIVSGGAIAQVVVFLWILINYSVTSGV-LGTLYPLI  237 (326)
Q Consensus       165 ~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~----~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~-~~~~~~~~  237 (326)
                      ++..|++  .+|.+..+.=+..++.-|+.|.+.||    +||++|-++.|.+-..+..++.+  ++|+.+. .....+++
T Consensus        40 Tdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F--~~p~~~~~~k~~ya~v  117 (467)
T COG2211          40 TDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLF--ITPDFSMTGKLIYALV  117 (467)
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHH--cCCCcccCcchHHHHH
Confidence            3445655  67888888889999999999999985    67777777778766655544433  3443221 11245788


Q ss_pred             HHHHHhhhhHHhhhhhHhhHHhhccCCch-hhhh-HHHHHHHHHHHHHHHHhh-hhh-------HHHHHHHHHHHHHHHH
Q 020441          238 MAALLGIGDGVLNTQLSALLGILFKHDTE-GAFA-QLKVWQCASIAVVFFIGP-YIS-------LQAMLIVMVVGICVAL  307 (326)
Q Consensus       238 ~~~l~G~~d~~~~~~~~~il~~~f~~~~~-~~fa-~~~~~~~~g~~i~~~i~~-~~~-------~~~~~~~~~~~~~~~~  307 (326)
                      .+.+++++++..+..-.++.+++.+|.+| ...+ .-....++|..+..+..+ .+.       ..........+.+++.
T Consensus       118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~  197 (467)
T COG2211         118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGV  197 (467)
T ss_pred             HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence            89999999999999999999999887543 2344 444444555455544442 332       1112222333344555


Q ss_pred             HHHHHHHHHHhhccC
Q 020441          308 VGILFLTIQVEKAFY  322 (326)
Q Consensus       308 ~~~~~~~~~~~~~~~  322 (326)
                      +.+++.-..++.+..
T Consensus       198 i~~l~~~~~v~ER~~  212 (467)
T COG2211         198 ILLLFCFFNVKERVV  212 (467)
T ss_pred             HHHHHHHHHhhcccC
Confidence            555554444444443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=97.98  E-value=0.00025  Score=61.75  Aligned_cols=136  Identities=15%  Similarity=0.080  Sum_probs=89.8

Q ss_pred             HHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCC
Q 020441          152 QAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGV  229 (326)
Q Consensus       152 ~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~  229 (326)
                      ..|.++.|.+.+. +.+|.+  +...+.....++..+ +++.|.+.|+.|++ .+..+|++.....+....+.....-+-
T Consensus        17 t~Y~Fs~yS~~Lk-~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~-~~l~iG~~~~~~GY~~~~l~~~~~i~~   93 (250)
T PF06813_consen   17 TTYTFSAYSPQLK-SRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPW-VVLLIGAVLGFVGYGLLWLAVSGRIPS   93 (250)
T ss_pred             cccchhhhhHHHH-HHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHhCccCc
Confidence            4555667766553 345554  455555566666655 58889999999998 477888888777665444322211100


Q ss_pred             cchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          230 LGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       230 ~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ...+...+..++-|.+.+..++.......+.||++|..+-++-+...++++++--.+...+
T Consensus        94 ~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen   94 LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHH
Confidence            0124444445566677777778777777799999998899999999999988865555433

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.98  E-value=9.4e-05  Score=69.96  Aligned_cols=57  Identities=21%  Similarity=0.142  Sum_probs=43.0

Q ss_pred             CchhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHh
Q 020441            1 MVPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL   68 (326)
Q Consensus         1 li~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~   68 (326)
                      |+.+|++.|+|.|-.-. -=+|++.++.          .+.|-|.++..-..+.+|.++|+.+...+.
T Consensus       133 mL~~R~l~Gvg~~n~a~-lR~Y~a~~s~----------~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~  189 (488)
T KOG2325|consen  133 MLVARILTGVGVGNFAV-LRAYIADAST----------VEDRPRAFAATSGGFVLGIILGPTIQLAFT  189 (488)
T ss_pred             HHHHHHHcCcCcccHHH-HHHHHHhccC----------ccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence            46799999999765543 4567777666          357778888777777889999998887654

>PRK09952 shikimate transporter; Provisional

Probab=97.94  E-value=0.00057  Score=64.88  Aligned_cols=103  Identities=10%  Similarity=-0.009  Sum_probs=67.6

Q ss_pred             HHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcc---hHHHHHHHHHHhhhhHHhhhhhHhhHH
Q 020441          182 AFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLG---TLYPLIMAALLGIGDGVLNTQLSALLG  258 (326)
Q Consensus       182 i~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~l~G~~d~~~~~~~~~il~  258 (326)
                      ++..+++++.|++.||+|||+ .+..+.++.....++  ..+.|+....+   +...++.-++.|++.+...+....++.
T Consensus        75 ~~~~~g~~~~G~l~Dr~Grr~-~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~  151 (438)
T PRK09952         75 LFRPLGGVVFGHFGDRLGRKR-MLMLTVWMMGIATAL--IGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAV  151 (438)
T ss_pred             HHHhhHHHHHHHHHHhhccHH-HHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Confidence            446688899999999999996 666666555443322  23334321000   113455677889999998888889999


Q ss_pred             hhccCCc-hhhhhHHHHHHHHHHHHHHHHh
Q 020441          259 ILFKHDT-EGAFAQLKVWQCASIAVVFFIG  287 (326)
Q Consensus       259 ~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~  287 (326)
                      |.+|+++ ....+.......+|..++..+.
T Consensus       152 e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~  181 (438)
T PRK09952        152 ESAPKNKKAFYSSGVQVGYGVGLLLSTGLV  181 (438)
T ss_pred             HhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999764 4444566666777766664443

>TIGR00806 rfc RFC reduced folate carrier

Probab=97.91  E-value=0.00041  Score=65.58  Aligned_cols=115  Identities=13%  Similarity=0.051  Sum_probs=89.8

Q ss_pred             cccch--h-hHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHh
Q 020441          167 ALGVS--G-VGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG  243 (326)
Q Consensus       167 ~lg~~--~-~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G  243 (326)
                      .+|.+  + .|.+...+..+..+..++.|.+.||+|.|+ ++..+.+...+...+.  .+..+     .....++-+++|
T Consensus        55 elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~-vL~l~~l~Wsl~t~L~--~fa~S-----l~~L~i~R~llG  126 (511)
T TIGR00806        55 VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP-VLVLQALSFVCVWLLL--LLGTS-----VWHMQLMEVFYS  126 (511)
T ss_pred             HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHHHHHHHH--HHHHH-----HHHHHHHHHHHH
Confidence            44543  5 788888999999999999999999999985 7666665555443322  22222     245677789999


Q ss_pred             hhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          244 IGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       244 ~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ++.+... ..+.++...+|++ +..+.+..+....+|.+++..+.+.+
T Consensus       127 vaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll  173 (511)
T TIGR00806       127 VTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLL  173 (511)
T ss_pred             HHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988 8899999999976 56788999999999999999998764

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.90  E-value=0.002  Score=59.70  Aligned_cols=154  Identities=20%  Similarity=0.179  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhc
Q 020441          145 FAYSGLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILIN  222 (326)
Q Consensus       145 ~~~~g~~~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~  222 (326)
                      .+..|.......+..++  ..+.+|++  ..|+....|+++..+++|+...+.||+.||+ +++....+....-+..  .
T Consensus        22 ~F~igttEfv~~gLLp~--iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~-lLl~~l~lFi~~n~l~--a   96 (394)
T COG2814          22 AFAIGTTEFVPVGLLPP--IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRR-LLLGLLALFIVSNLLS--A   96 (394)
T ss_pred             HHHHHhHHHHHHhchHH--HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHH-HHHHHHHHHHHHHHHH--H
Confidence            33334333333344443  34456665  7899999999999999999999999999995 6554444333222221  2


Q ss_pred             ccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHH----HHHHHHHhhhhhHHHHHH
Q 020441          223 YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCAS----IAVVFFIGPYISLQAMLI  297 (326)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g----~~i~~~i~~~~~~~~~~~  297 (326)
                      ..|+     +....+.-++.|+..+.+-+...++..++.|++ +..+.+.-....+++    .=++-+++.++.+....+
T Consensus        97 lAp~-----f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~  171 (394)
T COG2814          97 LAPS-----FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL  171 (394)
T ss_pred             Hhcc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence            3455     466777789999999999999999999999876 455666555544444    444555555555555444


Q ss_pred             HHHHHHHHHHH
Q 020441          298 VMVVGICVALV  308 (326)
Q Consensus       298 ~~~~~~~~~~~  308 (326)
                      .+.++.++.++
T Consensus       172 ~ia~l~ll~~~  182 (394)
T COG2814         172 AIAVLALLALL  182 (394)
T ss_pred             HHHHHHHHHHH
Confidence            44444333333

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=5.2e-05  Score=69.22  Aligned_cols=136  Identities=13%  Similarity=0.139  Sum_probs=100.5

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  251 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~  251 (326)
                      ++|++....++.+.+.+|+.|.+.||+|+|. -++.|.+......++  ..+.++     ++..++.-.+=|+++++..+
T Consensus       107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~i-pm~~Gl~vmf~sTil--Fafg~s-----y~~l~vAR~LQgvgsA~~~t  178 (464)
T KOG3764|consen  107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKI-PMVAGLFVMFLSTIL--FAFGNS-----YPMLFVARSLQGVGSAFADT  178 (464)
T ss_pred             chhHHHHHHHHHHHHhcccchhhHHHhcccc-HHHHHHHHHHHHHHH--HHHcch-----hHHHHHHHHHhhhhHHHHHh
Confidence            7899999999999999999999999999985 445555443322221  123333     35678888999999999999


Q ss_pred             hhHhhHHhhccCCc--hhhhhHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHH-HHHHHH
Q 020441          252 QLSALLGILFKHDT--EGAFAQLKVWQCASIAVVFFIGPYIS----LQAMLIVMVVGICVALVG-ILFLTI  315 (326)
Q Consensus       252 ~~~~il~~~f~~~~--~~~fa~~~~~~~~g~~i~~~i~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~  315 (326)
                      .-.+++++.||++.  ..+.++.-.+.++|.-+++-++..+.    -+++..++..++++.... ++.++.
T Consensus       179 sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p  249 (464)
T KOG3764|consen  179 SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEP  249 (464)
T ss_pred             hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCc
Confidence            99999999999875  55788888888888888888777664    345667777665554443 444444

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.88  E-value=0.0067  Score=56.52  Aligned_cols=223  Identities=14%  Similarity=0.071  Sum_probs=118.4

Q ss_pred             hhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHccCCccc----cc----------
Q 020441           43 GSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK----GE----------  108 (326)
Q Consensus        43 g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~f~~~~~i~~l~~~l~~~l~~~~~~----~~----------  108 (326)
                      -|..|+.-+....|-.+|.+++-.+....    ....+.+..+-++...++.++.+|+|++++.    ++          
T Consensus       128 q~vts~~raa~l~g~~~s~~lgQllvs~~----~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~~~~~  203 (412)
T PF01770_consen  128 QKVTSYTRAATLVGRFISSLLGQLLVSFG----GVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQDANES  203 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccccccc
Confidence            35567777777777777777776554322    1123334334444566778888999876431    00          


Q ss_pred             -cchh----hh-------ch----hhhhHHHHHHHHHHHhhcchhhHHHH--HHHHHHHHHHHHH-Hhhccccccccccc
Q 020441          109 -KETA----DA-------SV----NFYSYLVSLSKSITTLLADVRMLLII--PLFAYSGLQQAFV-WAEFTKEIVTPALG  169 (326)
Q Consensus       109 -~~~~----~~-------~~----~~~~~~~~~~k~~~~~~~~~~~lll~--p~~~~~g~~~~f~-~~~~~~~~~~~~lg  169 (326)
                       .++.    +.       +.    .....+++..++..+..++|+.+.-.  -.+-.+|..+.-. ....=+....+.-.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~  283 (412)
T PF01770_consen  204 ESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNE  283 (412)
T ss_pred             cccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCC
Confidence             0000    00       00    01112334444455555667765433  1122333322111 11110011111111


Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHh
Q 020441          170 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVL  249 (326)
Q Consensus       170 ~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~  249 (326)
                      ....|.+..+..+..++++...|++..++.+.. -+.++......+..+.++.+.++     .+..++.+++++......
T Consensus       284 ~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~-~l~l~~~S~l~a~~L~lm~~t~~-----Iwv~Y~~yIif~~~y~fl  357 (412)
T PF01770_consen  284 SVYNGAVEAASTLLGAIAALLAGYVKVNWDRWG-ELALGVFSLLQAGLLFLMSFTGN-----IWVCYAGYIIFRSLYMFL  357 (412)
T ss_pred             cccchHHHHHHHHHHHHHHHHHhHhhcchHHHH-HHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHHHHHHHHH
Confidence            236688888888888999999998855555442 22222222221111222344444     477889999999988888


Q ss_pred             hhhhHhhHHhhccCCc-hhhhhHHHHH
Q 020441          250 NTQLSALLGILFKHDT-EGAFAQLKVW  275 (326)
Q Consensus       250 ~~~~~~il~~~f~~~~-~~~fa~~~~~  275 (326)
                      .+....-+++...+++ +..|++..+.
T Consensus       358 iTiA~~qIA~~l~~e~yaLVFGiNtf~  384 (412)
T PF01770_consen  358 ITIASFQIAKNLSEERYALVFGINTFV  384 (412)
T ss_pred             HHHHHHHHHHhccccceeeeeeeHHHH
Confidence            8888888888777666 5577765553

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.86  E-value=0.0025  Score=60.09  Aligned_cols=306  Identities=13%  Similarity=0.059  Sum_probs=156.6

Q ss_pred             hHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhhH
Q 020441            4 ASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLF   83 (326)
Q Consensus         4 a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~f   83 (326)
                      +-++.++|.|+.=+...+.+.|.=+++        |.||-..+++||..-+.|..+++++...+....      +|..-|
T Consensus       123 ~L~~I~iG~Gl~K~NiS~llg~ly~~~--------DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~------g~~~gF  188 (498)
T COG3104         123 GLALIIVGTGLFKPNISSLLGELYPKD--------DPRRDGGFTLFYMGINIGSLIAPIITGLLAINY------GWHVGF  188 (498)
T ss_pred             HHHHHHhccccccccHHHHHHHhcCCC--------CcccCCCccEEEEEeehHHHHHHHHHHHHHHhh------CHHHHH
Confidence            445556677776666666666655543        446788899999998999888888876664432      466667


Q ss_pred             HHHHHHHHHHHHHHHHccCCccccc---c----chhh-h-----------chh-----hhh---------HHH---HHHH
Q 020441           84 IVFLGVITLGTILMCFLRKEEDKGE---K----ETAD-A-----------SVN-----FYS---------YLV---SLSK  127 (326)
Q Consensus        84 ~~~~~i~~l~~~l~~~l~~~~~~~~---~----~~~~-~-----------~~~-----~~~---------~~~---~~~k  127 (326)
                      ....+-+.+|.+.+.+.|+..+...   +    ..++ .           ...     ...         ...   -.++
T Consensus       189 ~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~  268 (498)
T COG3104         189 GLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFA  268 (498)
T ss_pred             HHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6555445555566666664433211   0    0000 0           000     000         000   0011


Q ss_pred             HHHHhh---cc-hhhHHHHHHHHHHHH-----HHHH-HHhhccccccccc-ccch-hhHHHHHHHHHHHHHHHhhhhhhc
Q 020441          128 SITTLL---AD-VRMLLIIPLFAYSGL-----QQAF-VWAEFTKEIVTPA-LGVS-GVGGAMAVYGAFDAICSLAAGRLT  195 (326)
Q Consensus       128 ~~~~~~---~~-~~~lll~p~~~~~g~-----~~~f-~~~~~~~~~~~~~-lg~~-~~~~~~~~~gi~~~i~~~~~G~l~  195 (326)
                      ++++.-   .+ +|++..+|+++..-.     ++.. ....|.....++. +|.+ ...+.-.+..+.-++.+|+.-++-
T Consensus       269 ~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~  348 (498)
T COG3104         269 EAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALW  348 (498)
T ss_pred             HHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHH
Confidence            111111   12 344445554433221     1111 1123333334444 4432 223334555555555555554432


Q ss_pred             ----cC--CCChhhHHHHHHHHHHHHHHHHHh--cccCC-CCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-c
Q 020441          196 ----TG--LPSITFIVSGGAIAQVVVFLWILI--NYSVT-SGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-T  265 (326)
Q Consensus       196 ----d~--~g~~~~i~~~g~i~~~~~~~~~~l--~~~~~-~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~  265 (326)
                          ++  ..+.+.=+.+|..+....++.+..  .+..+ ++....++....+++.+++.=+..+.-.+...++-|+. .
T Consensus       349 ~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~  428 (498)
T COG3104         349 TKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALK  428 (498)
T ss_pred             hHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHH
Confidence                22  111111133444443333322111  11111 22222456677789999999999999999999999987 3


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHhhh-------hhH--HH-HHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 020441          266 EGAFAQLKVWQCASIAVVFFIGPY-------ISL--QA-MLIVMVVGICVALVGILFLTIQVEKAFYS  323 (326)
Q Consensus       266 ~~~fa~~~~~~~~g~~i~~~i~~~-------~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (326)
                      ....|.+-+.++.|..++--+++.       .+.  +. ..+.+....+...+..+..+++.+|...+
T Consensus       429 s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~~~  496 (498)
T COG3104         429 SFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMMKG  496 (498)
T ss_pred             HHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcC
Confidence            557888888888888887777762       221  11 12233333344444555556666665543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.82  E-value=0.00063  Score=65.55  Aligned_cols=107  Identities=13%  Similarity=-0.002  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcch---HHHHHHHHHHhhhhHHhhhhhH
Q 020441          178 AVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGT---LYPLIMAALLGIGDGVLNTQLS  254 (326)
Q Consensus       178 ~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~l~G~~d~~~~~~~~  254 (326)
                      .+.-++..++++++|++.||+|||+ ++..+.++..+..+.  ....|+....+.   ....+.-++.|++.+...+...
T Consensus        64 ~~~~l~~~ig~~~~G~l~Dr~Grr~-~l~~~~~l~~i~~~~--~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~  140 (490)
T PRK10642         64 SVPFLIRPLGGLFFGMLGDKYGRQK-ILAITIVIMSISTFC--IGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGAS  140 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHH
Confidence            3444667889999999999999995 766666555544332  223343211001   1245667888999999999999


Q ss_pred             hhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHh
Q 020441          255 ALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIG  287 (326)
Q Consensus       255 ~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~  287 (326)
                      +++.|.+|++ +....+.......+|..++..+.
T Consensus       141 ~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642        141 IFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999865 45455566666666666555443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.82  E-value=0.00032  Score=68.05  Aligned_cols=111  Identities=13%  Similarity=0.082  Sum_probs=88.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  251 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~  251 (326)
                      +.+++.....++..+++++.|+++|++|||. .+.++.+...+..+...  ..++     .....+.-++.|++.+..+.
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~-~l~~~~~~~~iG~ii~~--~a~~-----~~~l~~GR~l~G~g~G~~~~  161 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKK-TLLLAVVLFLIGAIIIA--LAPS-----WYQLIVGRILTGLGVGGASV  161 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHH--Hhhh-----HHHHHHHHHHhccchhhhhh
Confidence            3478888999999999999999999999995 77777777666554332  3333     35677788999999999999


Q ss_pred             hhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          252 QLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       252 ~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ..+.+++|..|.+ |..--+.+++...+|..+++.++...
T Consensus       162 ~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~  201 (513)
T KOG0254|consen  162 LAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT  201 (513)
T ss_pred             cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            9999999999986 55445588888889999998887655

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.75  E-value=0.016  Score=50.63  Aligned_cols=199  Identities=15%  Similarity=0.085  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHhh-cchhhHHHHHHHHHHHHHHHHHHhhcccccccccccc--h--hhHHHHHHHHHHHHHHHhhhhhhc
Q 020441          121 YLVSLSKSITTLL-ADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV--S--GVGGAMAVYGAFDAICSLAAGRLT  195 (326)
Q Consensus       121 ~~~~~~k~~~~~~-~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~--~--~~~~~~~~~gi~~~i~~~~~G~l~  195 (326)
                      .+..++|.-.+.+ .|.|..++.  .+.+-++.+.+.-+|   +-+.++..  +  --|++...+-+..++|+-+..|+.
T Consensus       232 dlltqf~gaa~aiaSD~ki~LLG--~iqsLFE~smytFVF---LWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~  306 (454)
T KOG4332|consen  232 DLLTQFKGAARAIASDEKIALLG--AIQSLFEGSMYTFVF---LWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLL  306 (454)
T ss_pred             HHHHHhhHhHHHHhcchHHHHHH--HHHHHHhhhhheeee---eecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHH
Confidence            4455555555554 678877665  344444444443233   11233331  1  235666677777888888888886


Q ss_pred             cCCCCh-hhHHHHHHHHHHHHH-HHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHH
Q 020441          196 TGLPSI-TFIVSGGAIAQVVVF-LWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQL  272 (326)
Q Consensus       196 d~~g~~-~~i~~~g~i~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~  272 (326)
                      .|...| .+.+.+........+ +++ +....++....+...++...++-.+-+.+-+.+.-+=.++.|++ +......+
T Consensus       307 s~s~~~ve~ymqivf~vs~a~l~Lpi-lt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfF  385 (454)
T KOG4332|consen  307 SRSSPKVESYMQIVFLVSIAALLLPI-LTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFF  385 (454)
T ss_pred             hcCCcccchHHHHHHHHHHHHHHHHH-HHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhhe
Confidence            554332 112222222222222 222 22111222223455666677777888888888888889999987 45566678


Q ss_pred             HHHHHHHHHHHHHHh--hhh--hHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccCCCC
Q 020441          273 KVWQCASIAVVFFIG--PYI--SLQAMLIVMVVGICVALV----GILFLTIQVEKAFYSPR  325 (326)
Q Consensus       273 ~~~~~~g~~i~~~i~--~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  325 (326)
                      |.=..+-.|++...-  .-.  +...+.-++...+..+.+    .+-.+|+..+|+++.+|
T Consensus       386 RvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~i~~~~L~~v~e~d~~~~~~~~~  446 (454)
T KOG4332|consen  386 RVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVASILQRRLMTVVEHDKERRVPWST  446 (454)
T ss_pred             echhhHhhhhhheecccccCccccchhhhhhHHHHHHHHHHHHHHHHhhhccHhhcCCCCc
Confidence            877777666665441  111  122333333333333322    33344555666665554

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.73  E-value=0.00072  Score=64.07  Aligned_cols=137  Identities=18%  Similarity=0.105  Sum_probs=91.1

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhccCCC--ChhhHHHHHHHHHHHHH-HHHHhcccCCCCCcchHHHHHHHHHHhhhh
Q 020441          170 VSGVGGAMAVYGAFDAICSLAAGRLTTGLP--SITFIVSGGAIAQVVVF-LWILINYSVTSGVLGTLYPLIMAALLGIGD  246 (326)
Q Consensus       170 ~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g--~~~~i~~~g~i~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d  246 (326)
                      .+..|++.....++.+++++++|..+.|.+  ++ |++ .+.+..++.- +...+.+.|+..   -++.++..++.|++.
T Consensus        70 ~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~-Pli-~s~ii~~~g~llY~~l~~~~~~~---~y~mL~~R~l~Gvg~  144 (488)
T KOG2325|consen   70 ATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKK-PLI-VSFLIAIIGNLLYLALAYVPNGV---KYLMLVARILTGVGV  144 (488)
T ss_pred             cchhhHHHHHHHHHHHhcchhhcccccccCCccc-CHH-HHHHHHHHHHHHHHHHHhcccch---HHHHHHHHHHcCcCc
Confidence            346788899999999999999999987776  45 554 3444444322 221244545421   255677889999998


Q ss_pred             HHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh-----------------HHHHHHHHHHHHHHHHHH
Q 020441          247 GVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS-----------------LQAMLIVMVVGICVALVG  309 (326)
Q Consensus       247 ~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~-----------------~~~~~~~~~~~~~~~~~~  309 (326)
                      +........+-..-.+++|..+++.....+.+|..+++.+.+.++                 ...+.|++..+.++..+.
T Consensus       145 ~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~  224 (488)
T KOG2325|consen  145 GNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVI  224 (488)
T ss_pred             ccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHH
Confidence            876555444444445677777888888888888888877776553                 234667777777666554


Q ss_pred             HH
Q 020441          310 IL  311 (326)
Q Consensus       310 ~~  311 (326)
                      ..
T Consensus       225 i~  226 (488)
T KOG2325|consen  225 IL  226 (488)
T ss_pred             HH
Confidence            44

>TIGR00889 2A0110 nucleoside transporter

Probab=97.72  E-value=0.00076  Score=63.66  Aligned_cols=117  Identities=9%  Similarity=0.047  Sum_probs=63.4

Q ss_pred             cccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhh
Q 020441          167 ALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  244 (326)
Q Consensus       167 ~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~  244 (326)
                      .+|.  +++|++...+.++..+++++.|+++||+|++++++..+.+...+...+  ..+.++     ++..++..++.|+
T Consensus        32 ~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~l~~~  104 (418)
T TIGR00889        32 TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF--AAQVTT-----PAGMFPVLLANSL  104 (418)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH--HHHhcC-----HHHHHHHHHHHHH
Confidence            3444  489999999999999999999999999865334655554444333222  122232     2334455555666


Q ss_pred             hhHHhhhhhHhhHHhhcc-C--CchhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          245 GDGVLNTQLSALLGILFK-H--DTEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       245 ~d~~~~~~~~~il~~~f~-~--~~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      +.+...+...++...... .  +....+.--|.+-++|.+++..+...+
T Consensus       105 ~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G~lG~~ig~~l~g~l  153 (418)
T TIGR00889       105 AYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMGTIGFIAAMWAVSLL  153 (418)
T ss_pred             HHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeehhHHHHHHHHHHHHh
Confidence            655444444333221111 0  001112222333345666666666544

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.70  E-value=0.00025  Score=70.53  Aligned_cols=120  Identities=17%  Similarity=0.098  Sum_probs=85.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhc------ccCC-------------CC---
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILIN------YSVT-------------SG---  228 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~------~~~~-------------~~---  228 (326)
                      .+.|++...+-++..++.++.|.+.||.+|++ .+..|.++..+..++..+.      +..+             .+   
T Consensus        68 ~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~-~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~  146 (633)
T TIGR00805        68 SSSGLINGSYEIGNLLLIIFVSYFGTKLHRPI-VIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCM  146 (633)
T ss_pred             CcceeeeehhhHHHHHHHHHHHHhhcccCcce-EEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccccccc
Confidence            36788888999999999999999999999885 5555554444332211110      0000             00   


Q ss_pred             ----------------------CcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHH
Q 020441          229 ----------------------VLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFF  285 (326)
Q Consensus       229 ----------------------~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~  285 (326)
                                            ...+..+++.-++.|++.+...+...+++.+.+|++ +....+++.....+|.++++.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~l  226 (633)
T TIGR00805       147 ENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYL  226 (633)
T ss_pred             CCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHH
Confidence                                  000123456788999999999999999999999876 466888999999999999999


Q ss_pred             Hhhhhh
Q 020441          286 IGPYIS  291 (326)
Q Consensus       286 i~~~~~  291 (326)
                      ++..+.
T Consensus       227 lgg~l~  232 (633)
T TIGR00805       227 LGSFCL  232 (633)
T ss_pred             HHHHHH
Confidence            887553

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.69  E-value=0.0021  Score=59.33  Aligned_cols=146  Identities=17%  Similarity=0.148  Sum_probs=94.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHH
Q 020441          136 VRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQV  213 (326)
Q Consensus       136 ~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~  213 (326)
                      +|.+.+....+..++..=+.++.....+ .+..|.+  +.+++..+-.+...+...+.|.+.||+|.|+ ......++.+
T Consensus        13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i-~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~-~~~~s~~l~~   90 (417)
T COG2223          13 RRNLWLSTLAFDVGFMVWTLFSPLGVFI-KSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRK-WTILSMLLLL   90 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchH-HHHHHHHHHH
Confidence            4445555455555555434444433222 2455554  7888888888889999999999999999986 5554444433


Q ss_pred             HHHH-HHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          214 VVFL-WILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       214 ~~~~-~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      +-.+ +.+....++     ++..+++.++.|++-+.+... ....++.||+++ ..+.+++- .-++|.++..++.|.+
T Consensus        91 IP~~~~~~a~~~~~-----~~~ll~~gll~G~~GasFav~-m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v  162 (417)
T COG2223          91 IPCLGLAFAVTYPS-----TWQLLVIGLLLGLAGASFAVG-MPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLV  162 (417)
T ss_pred             HHHHHHHHHccCCc-----hHHHHHHHHHHhcccceehcc-cccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHH
Confidence            2111 111122222     256788889999988876544 356678899875 66777887 8888888888888766

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.64  E-value=0.0028  Score=58.24  Aligned_cols=116  Identities=16%  Similarity=0.066  Sum_probs=86.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhh
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN  250 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~  250 (326)
                      .+.+.+-.++-.+..+.+...|++.||+|.|+ -++.|..+.++...+   .|+ .+...++...++..+.+|.|-+..|
T Consensus        48 ~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~-gi~lgL~l~avg~~l---F~p-Aa~~~~y~~FL~~lFila~Gi~~Le  122 (422)
T COG0738          48 FEASLIQFAFFGGYFIMSLPAGLLIKKLGYKA-GIVLGLLLYAVGAAL---FWP-AASSKSYGFFLVALFILASGIGLLE  122 (422)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHhhhHH-HHHHHHHHHHHHHHH---Hhh-hhhhhhHHHHHHHHHHHHhhhHHHH
Confidence            36677777777788899999999999999885 566777666644322   221 1111123445666788899999999


Q ss_pred             hhhHhhHHhhccCCch-hhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          251 TQLSALLGILFKHDTE-GAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       251 ~~~~~il~~~f~~~~~-~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +..+.+++.+.|++.+ .-...-+.+.++|+.+++.+.+++-
T Consensus       123 taaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~li  164 (422)
T COG0738         123 TAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLI  164 (422)
T ss_pred             hccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            9999999999988653 3567888999999999999887653

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.63  E-value=0.0011  Score=64.47  Aligned_cols=112  Identities=13%  Similarity=-0.014  Sum_probs=81.6

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  251 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~  251 (326)
                      .......++-++..+|+.++|.++||+|||+ ++..+.++..++-+.  ..+.++     +....+.-++-|++.+...+
T Consensus       119 ~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~-~~~~~~~~~~i~~~~--~a~a~~-----~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  119 LVALGQSLFFLGVLVGSLIFGPLSDRFGRKP-VLLVSLLLFIIFGIL--TAFAPN-----YWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhhheehHhhcccHH-HHHHHHHHHHHHHHH--HHHhCc-----HHHHHHHHHHHHhhccchhH
Confidence            4556677788889999999999999999995 777777666654432  234454     46678888999999999999


Q ss_pred             hhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhhH
Q 020441          252 QLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYISL  292 (326)
Q Consensus       252 ~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~~  292 (326)
                      ..+.++.|+++++ |..+.+. ......+..+++....++..
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~  231 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR  231 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            9999999999766 4444445 55555555555555555543

>PRK15075 citrate-proton symporter; Provisional

Probab=97.61  E-value=0.0013  Score=62.29  Aligned_cols=101  Identities=14%  Similarity=0.061  Sum_probs=65.7

Q ss_pred             HHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcc---hHHHHHHHHHHhhhhHHhhhhhHhhHHhhc
Q 020441          185 AICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLG---TLYPLIMAALLGIGDGVLNTQLSALLGILF  261 (326)
Q Consensus       185 ~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~l~G~~d~~~~~~~~~il~~~f  261 (326)
                      .+++++.|++.||+|||+ ++..+.++.....+.  ..+.++....+   +...++.-++.|++.+...+....++.|.+
T Consensus        70 ~ig~~~~G~l~Dr~Grr~-~l~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~  146 (434)
T PRK15075         70 PLGAIVLGAYIDRVGRRK-GLIVTLSIMASGTLL--IAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIA  146 (434)
T ss_pred             hhHHHHHHHHhhhhchHH-HHHHHHHHHHHHHHH--HHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhC
Confidence            467889999999999996 666666554433322  22333310000   012355567889999988887889999999


Q ss_pred             cCC-chhhhhHHHHHHHHHHHHHHHHhh
Q 020441          262 KHD-TEGAFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       262 ~~~-~~~~fa~~~~~~~~g~~i~~~i~~  288 (326)
                      |++ |..+.+.+.....+|..++..+..
T Consensus       147 p~~~rg~~~~~~~~~~~~g~~~g~~~g~  174 (434)
T PRK15075        147 TPGRKGFYTSWQSASQQVAVVFAALLGY  174 (434)
T ss_pred             CcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            866 566777777766666655555443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.56  E-value=0.0035  Score=58.79  Aligned_cols=107  Identities=10%  Similarity=0.132  Sum_probs=73.6

Q ss_pred             cchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHH
Q 020441          169 GVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGV  248 (326)
Q Consensus       169 g~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~  248 (326)
                      ...++|.++.+..+..++..+++|.++||.++++.++.+..+........  ....++     ++..+.+.+++.+....
T Consensus        35 s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~--~~~~~~-----f~~~~~~~~l~~~~~~p  107 (400)
T PF03825_consen   35 SGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLL--LAFSSS-----FWWLFVIMLLFSFFFSP  107 (400)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHH--HHHhcc-----HHHHHHHHHHHHHHHcc
Confidence            34589999999999999999999999999865444544433333332211  122222     35556667777777777


Q ss_pred             hhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHH
Q 020441          249 LNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVV  283 (326)
Q Consensus       249 ~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~  283 (326)
                      ..+...++.-+.-+++ ..-|+-.|.+-++|-.++
T Consensus       108 ~~pl~dsi~~~~~~~~-~~~YG~iRlwGSiGf~~~  141 (400)
T PF03825_consen  108 TMPLSDSIALSYLGDR-GKDYGRIRLWGSIGFIVA  141 (400)
T ss_pred             HHHHHHHHHHHHcccc-cCCCCcchhhhhHHHHHH
Confidence            7777777776666644 336999999999998877

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.53  E-value=0.017  Score=52.60  Aligned_cols=87  Identities=16%  Similarity=-0.058  Sum_probs=60.6

Q ss_pred             ccccchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhh
Q 020441          166 PALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIG  245 (326)
Q Consensus       166 ~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~  245 (326)
                      ..+..+++.....+.-....+.+++.|.+.||+|||+ .-+.-.+++....+.   ...++     +..+++--++-|++
T Consensus        64 yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~-~cl~~cily~~scl~---k~~~~-----~~~L~~GRvlgGia  134 (354)
T PF05631_consen   64 YGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKK-ACLLFCILYSLSCLT---KHSSN-----YPVLLLGRVLGGIA  134 (354)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHH---Hhccc-----cHHHHHHHHHHHHH
Confidence            3445567888888877888899999999999999996 444445555544322   22233     35567777888999


Q ss_pred             hHHhhh-hhHhhHHhhc
Q 020441          246 DGVLNT-QLSALLGILF  261 (326)
Q Consensus       246 d~~~~~-~~~~il~~~f  261 (326)
                      .+...+ .-.|++.|+-
T Consensus       135 TSLLfS~FEsW~V~Eh~  151 (354)
T PF05631_consen  135 TSLLFSAFESWMVHEHN  151 (354)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            888775 5567777763

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.47  E-value=0.00064  Score=63.39  Aligned_cols=124  Identities=13%  Similarity=0.124  Sum_probs=68.7

Q ss_pred             cccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHH-HHHHHHHHhcccC---CCCCcchHHHH
Q 020441          163 IVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQ-VVVFLWILINYSV---TSGVLGTLYPL  236 (326)
Q Consensus       163 ~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~-~~~~~~~~l~~~~---~~~~~~~~~~~  236 (326)
                      |.++..|.  +++|.+..+..+...+.+|+.|.+.||.+.|+.++..-.++. +....+.+ .+.|   .+ .  ....+
T Consensus        33 WL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~-v~~pll~~n-~--~lg~i  108 (412)
T PF01306_consen   33 WLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIY-VFGPLLQSN-F--WLGAI  108 (412)
T ss_dssp             HHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHH-THHHHHHTT----HHHHH
T ss_pred             HHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-H--HHHHH
Confidence            44444455  489999999999999999999999999985544433222221 11111111 1111   10 0  11223


Q ss_pred             HHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          237 IMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       237 ~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +..+.+|+......+..-++..+... +..--|+=-|.+-|+|.+++-.+...+-
T Consensus       109 ig~i~l~~~f~~~~~~~Ea~~er~sr-~~~feYG~~R~wGSig~ai~s~~~G~L~  162 (412)
T PF01306_consen  109 IGGIYLGLVFNAGVPLSEAYAERVSR-RNGFEYGRARMWGSIGFAIASLLAGILF  162 (412)
T ss_dssp             HTTTTTTTTTTTHHHHHHHHHHHHHH-HHSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccchHHHHHHHHHHH-HhcCCcchHHHHhhHHHHHHHHHhheee
Confidence            33344455444444444444433222 1122478899999999999988887663

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=97.41  E-value=0.031  Score=50.58  Aligned_cols=222  Identities=16%  Similarity=0.158  Sum_probs=115.4

Q ss_pred             cchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHccCCccc----cccch----
Q 020441           40 TVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTILMCFLRKEEDK----GEKET----  111 (326)
Q Consensus        40 ~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~f~~~~~i~~l~~~l~~~l~~~~~~----~~~~~----  111 (326)
                      ++.-|..|.-.+..-.|-..|...+-.+...+.    .+.+.+=.+-++...++..+++|+|+++++    .++++    
T Consensus       126 ~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~----~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~  201 (433)
T KOG3810|consen  126 EMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLET----LSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKISVG  201 (433)
T ss_pred             HHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcc----cchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccceec
Confidence            456677777777777777777766655543221    111111122234566777889999987632    01110    


Q ss_pred             -hhh---chhhhhHHHHHHHHH----HHhhcchhhHHHH--HHHHHHHHHHHHHHhhccccc----ccccccchhhHHHH
Q 020441          112 -ADA---SVNFYSYLVSLSKSI----TTLLADVRMLLII--PLFAYSGLQQAFVWAEFTKEI----VTPALGVSGVGGAM  177 (326)
Q Consensus       112 -~~~---~~~~~~~~~~~~k~~----~~~~~~~~~lll~--p~~~~~g~~~~f~~~~~~~~~----~~~~lg~~~~~~~~  177 (326)
                       -|+   +.+.....++.++.+    ...-++|+.+.=.  -.+-.+|+.+.-.   |++.+    ..+.. ..+.|.+.
T Consensus       202 ~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~n---Y~Q~LW~~~~~~~~-~vyNG~ve  277 (433)
T KOG3810|consen  202 DLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTN---YTQILWKEVAPNPA-NVYNGAVE  277 (433)
T ss_pred             cchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHH---HHHHHHHhhCCCch-hhhcCHHH
Confidence             011   001111112222222    2334556654322  1122223322211   11111    01110 11446667


Q ss_pred             HHHHHHHHHHHhhhhhhccCCCCh-hhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhh
Q 020441          178 AVYGAFDAICSLAAGRLTTGLPSI-TFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSAL  256 (326)
Q Consensus       178 ~~~gi~~~i~~~~~G~l~d~~g~~-~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~i  256 (326)
                      .+.-+..++.++..|.+.-++.|. ..++.++...++.+.+  .+.++.+     .+.+++.++++...+....+....-
T Consensus       278 Av~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf--~m~~t~~-----Iw~~Ya~yvlfr~~y~l~itiA~~~  350 (433)
T KOG3810|consen  278 AVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLF--IMAQTQH-----IWVCYAGYVLFRVIYQLTITIATFQ  350 (433)
T ss_pred             HHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhh--hhhcccc-----eehhhhhHHHHHhhHhhhhhHHHHH
Confidence            777777788888889876444433 2344555555554332  2455554     4778999999988888888888788


Q ss_pred             HHhhccCCc-hhhhhHHHHHH
Q 020441          257 LGILFKHDT-EGAFAQLKVWQ  276 (326)
Q Consensus       257 l~~~f~~~~-~~~fa~~~~~~  276 (326)
                      +++...+++ +..|++..+.-
T Consensus       351 iA~nL~~e~~gLvFGiNTFvA  371 (433)
T KOG3810|consen  351 IARNLSSELFGLVFGINTFVA  371 (433)
T ss_pred             HHHhhhhhhheeeeehHHHHH
Confidence            877776665 55788666543

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.41  E-value=0.062  Score=51.35  Aligned_cols=253  Identities=16%  Similarity=0.127  Sum_probs=135.2

Q ss_pred             hhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHH
Q 020441           13 SIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITL   92 (326)
Q Consensus        13 g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~f~~~~~i~~l   92 (326)
                      +..+....+|+++.++          +++|....|+..+.+..+..+|++++....+...      ...+|.+-.+...+
T Consensus       127 ~~~~s~~~a~vadis~----------~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~------~a~~f~ia~~~~~~  190 (463)
T KOG2816|consen  127 SAIFSVGFAYVADISS----------EEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG------IALVFLIAAASGIL  190 (463)
T ss_pred             hhhhhhhhhheeeccc----------hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC------chHHHHHHHHHHHH
Confidence            3455556666766666          5689999999999899999999999987765421      22334444434444


Q ss_pred             HHHH-HHHccCCccccccc-hh--hh--chhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 020441           93 GTIL-MCFLRKEEDKGEKE-TA--DA--SVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTP  166 (326)
Q Consensus        93 ~~~l-~~~l~~~~~~~~~~-~~--~~--~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~  166 (326)
                      +.+. .+++|.+.+|++++ ..  +.  .........+..+...+.-.+|+.+.+.+..++.-.-..--.......|...
T Consensus       191 ~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~  270 (463)
T KOG2816|consen  191 SLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKA  270 (463)
T ss_pred             HHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEee
Confidence            4333 35566655543321 00  00  0000111122233333322344444444333322211110001000111112


Q ss_pred             ccc--chhhHHHHHHHHHHHHHHHhhhh-hhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHh
Q 020441          167 ALG--VSGVGGAMAVYGAFDAICSLAAG-RLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG  243 (326)
Q Consensus       167 ~lg--~~~~~~~~~~~gi~~~i~~~~~G-~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G  243 (326)
                      ..+  .+..+......++...++..+.. .+...++-++ ++..|.........+.-..+.+       +..+...+ ..
T Consensus       271 ~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~-~i~lGl~~~~~~~~~~af~~~~-------w~~~~~~v-~~  341 (463)
T KOG2816|consen  271 KFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKR-LISLGLLSEFLQLLLFAFATET-------WMMFAAGV-VV  341 (463)
T ss_pred             ecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HhhHHHHHHHHHHHHHHHhccc-------hhhhHHHH-HH
Confidence            223  34556556666667777777666 4444455554 6677777766554332223322       33343333 34


Q ss_pred             hhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          244 IGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       244 ~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .......+...++.+.+.+.+ +..++++....+++...++..+-..+
T Consensus       342 ~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  342 ALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             HhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence            445566777888888887544 56789999999999888887776544

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.33  E-value=0.0025  Score=60.86  Aligned_cols=134  Identities=12%  Similarity=0.113  Sum_probs=89.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  251 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~  251 (326)
                      +-+++...+..+.+++....|.+.||+|.|+ ++..+.++..+..++..+..+-+     ++..+++-++-|++++...+
T Consensus        74 ~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~-v~~~~~~~sa~~t~l~P~aa~~~-----~~~~~~~R~lqGl~~g~~~p  147 (466)
T KOG2532|consen   74 EKGLIFSSFFWGYILGQIPGGYLADKFGARR-VFFISGLISALLTLLTPLAASIG-----FYLLLVLRFLQGLGQGVLFP  147 (466)
T ss_pred             HHHHHHHHHHHHHHHHHcCcHHHHHHcCchH-HHHHHHHHHHHHHHHHHHHHHhc-----chhhHHHHHHhHHHHhHHHh
Confidence            4566677777788899999999999999985 66555555443333222221111     23457788999999999999


Q ss_pred             hhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHHHH
Q 020441          252 QLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS-----LQAMLIVMVVGICVALVGIL  311 (326)
Q Consensus       252 ~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~  311 (326)
                      .+..+.++..|.+ +....++.-....+|..++.-++.+++     .....|+..++.++-.+.++
T Consensus       148 a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~  213 (466)
T KOG2532|consen  148 AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWF  213 (466)
T ss_pred             hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHH
Confidence            9999999999865 455566666666777777777776665     33334444444444333333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.32  E-value=0.019  Score=53.37  Aligned_cols=61  Identities=5%  Similarity=-0.029  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHhhcccccccccccchhhHHHH--HHHHHHHHHHHhhhhh-hccCCCChhhHH
Q 020441          144 LFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAM--AVYGAFDAICSLAAGR-LTTGLPSITFIV  205 (326)
Q Consensus       144 ~~~~~g~~~~f~~~~~~~~~~~~~lg~~~~~~~~--~~~gi~~~i~~~~~G~-l~d~~g~~~~i~  205 (326)
                      +.+.+|...++.....+.-+.+..+..+++|+..  .+..+...+.+|+.++ ..||.|||+ .+
T Consensus         9 ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~-~~   72 (390)
T TIGR02718         9 LYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRR-SW   72 (390)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcch-hH
Confidence            4455666655555444432223233344777753  4557778888999966 689999885 44

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=97.32  E-value=0.0071  Score=56.61  Aligned_cols=116  Identities=16%  Similarity=0.020  Sum_probs=78.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  251 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~  251 (326)
                      ..+.+.....++.++|++++|.+.||+|||+ ++....+...++.+..-+....+++..-.+.++.--+++|+|-+.=++
T Consensus        85 i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~-vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYP  163 (538)
T KOG0252|consen   85 VLALVNAAALVGTIFGQLFFGWLGDKFGRKK-VYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYP  163 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcchh-hhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCc
Confidence            4467778888899999999999999999995 765554444433332112222222110113345556789999999888


Q ss_pred             hhHhhHHhhccCCc-hh----hhhHHHHHHHHHHHHHHHHhh
Q 020441          252 QLSALLGILFKHDT-EG----AFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       252 ~~~~il~~~f~~~~-~~----~fa~~~~~~~~g~~i~~~i~~  288 (326)
                      .-.++.+|...+++ ..    .|+...+.+-.|+.++-.+..
T Consensus       164 lSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~  205 (538)
T KOG0252|consen  164 LSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSA  205 (538)
T ss_pred             chHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHH
Confidence            88889988877653 32    477777777777777777664

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=97.29  E-value=0.024  Score=51.65  Aligned_cols=173  Identities=13%  Similarity=0.068  Sum_probs=85.2

Q ss_pred             CchhHHhhhhhhhhhhcc-ccceecccchhhhhhcCCCcCcchhhhhHHHHHHH----HHhHHHHHHHHHHHhcCCCCCC
Q 020441            1 MVPASLYLGFAASIIWVG-EGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMF----ASHQFVGNLITLAVLKDDKGGS   75 (326)
Q Consensus         1 li~a~~l~G~~~g~~w~a-~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~----~~~~iiG~li~~~~~~~~~~~~   75 (326)
                      |+.+|++.|++.++++++ +.=+++||.+++.+      ++..+   ..|+...    ....+..++++-.+....+   
T Consensus       124 L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~------~~~L~---~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~---  191 (354)
T PF05631_consen  124 LLLGRVLGGIATSLLFSAFESWMVHEHNKRGFP------QEWLS---DTFSLATFFGNGVVAIGAGVVANVLADWFG---  191 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------hHHHH---HHHHHHHHHHhHHHHHHHhHHHHHHHHHhC---
Confidence            468999999999999987 66677887554211      11222   2333111    2234444555543322111   


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHh-hcchhhHHHHHHHHHHHHHHHH
Q 020441           76 TSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTL-LADVRMLLIIPLFAYSGLQQAF  154 (326)
Q Consensus        76 ~~~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~lll~p~~~~~g~~~~f  154 (326)
                       .|...||..-..+..++.++...  .-+++..+. ++     +.+.++.+++-++. ++|||.+++.  ...+-++.+.
T Consensus       192 -~g~vaPF~~a~~~l~~~~~~I~~--~W~ENyg~~-~~-----~~~~~~~~~~a~~~i~~d~ril~LG--~~qslFE~sm  260 (354)
T PF05631_consen  192 -FGPVAPFDAAIVLLAVAAVLILK--TWPENYGDT-SS-----SSSLSGSFREAWRAILSDPRILLLG--LIQSLFEGSM  260 (354)
T ss_pred             -CCCcchHHHHHHHHHHHHHHHHh--cccccCCCc-cc-----ccchHHHHHHHHHHHHcCchhHHHH--HHHHHHHHHH
Confidence             12345676544333333332221  111111110 00     11222233333333 4679987765  4444455554


Q ss_pred             HHhhc--ccccccccccchhhHHHHHHHHHHHHHHHhhhhhhccC
Q 020441          155 VWAEF--TKEIVTPALGVSGVGGAMAVYGAFDAICSLAAGRLTTG  197 (326)
Q Consensus       155 ~~~~~--~~~~~~~~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~  197 (326)
                      +.-+|  ++.+..+.-++ --|++...+-++.++|+-+..++..+
T Consensus       261 y~FVflWtPaL~~~~~~~-P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  261 YLFVFLWTPALDPDDEEL-PLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             HHheeeeeceecCCCCCC-CchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44333  34333111111 34677888888889999999776543

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.25  E-value=0.0068  Score=57.81  Aligned_cols=106  Identities=15%  Similarity=0.168  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhh
Q 020441          177 MAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSAL  256 (326)
Q Consensus       177 ~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~i  256 (326)
                      ..++-++.++|+.+.|.+.||+|||+ .+.+..++.....++.......+.    +....+.-++.|+..+......+-.
T Consensus        66 vs~f~iG~~~Gs~~~~~la~~~GRK~-~l~~~~~l~~~~~~~~~~s~~~~~----~e~li~GR~i~Gl~~gl~~~~~pmy  140 (485)
T KOG0569|consen   66 VSIFFIGGMIGSFSSGLLADRFGRKN-ALLLSNLLAVLAALLMGLSKSAPS----FEMLILGRLIVGLACGLSTGLVPMY  140 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            45677788999999999999999995 555554444433222222222221    2455666789999999999999999


Q ss_pred             HHhhccCCchhhhh-HHHHHHHHHHHHHHHHh
Q 020441          257 LGILFKHDTEGAFA-QLKVWQCASIAVVFFIG  287 (326)
Q Consensus       257 l~~~f~~~~~~~fa-~~~~~~~~g~~i~~~i~  287 (326)
                      ++|..|++.....+ ...+.-++|..++..++
T Consensus       141 l~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~  172 (485)
T KOG0569|consen  141 LTEISPKNLRGALGTLLQIGVVIGILLGQVLG  172 (485)
T ss_pred             HhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            99999988433455 88888888888886665

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.16  E-value=0.024  Score=52.50  Aligned_cols=103  Identities=21%  Similarity=0.135  Sum_probs=64.1

Q ss_pred             HHHHhhhhhhccCCC-----ChhhHHHHHHHHHHHHHHH-----HHhcc--cC--CCCCcchHHHHHHHHHHhhhhHHhh
Q 020441          185 AICSLAAGRLTTGLP-----SITFIVSGGAIAQVVVFLW-----ILINY--SV--TSGVLGTLYPLIMAALLGIGDGVLN  250 (326)
Q Consensus       185 ~i~~~~~G~l~d~~g-----~~~~i~~~g~i~~~~~~~~-----~~l~~--~~--~~~~~~~~~~~~~~~l~G~~d~~~~  250 (326)
                      ....+.+|..+|+.+     ||.|-+..|..+.......     ..+.-  .+  .+.+.+.....+.+.++|++-+..+
T Consensus        28 ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~  107 (403)
T PF03209_consen   28 APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASG  107 (403)
T ss_pred             HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhH
Confidence            456888999999988     7866666676655432211     11211  01  1112222346777889999999999


Q ss_pred             hhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHh
Q 020441          251 TQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIG  287 (326)
Q Consensus       251 ~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~  287 (326)
                      +...+++.+..|++ |..+.++--.-.-+|..++-.+.
T Consensus       108 T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~  145 (403)
T PF03209_consen  108 TSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVF  145 (403)
T ss_pred             HHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999876 45566633333334544444444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=97.02  E-value=0.033  Score=50.71  Aligned_cols=111  Identities=14%  Similarity=0.006  Sum_probs=83.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  251 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~  251 (326)
                      ..|+...+=.++..+.+++..++.+|+|.++ .+..+.++......  .-...+      ....+.-..+.|++-+..|.
T Consensus        48 ~aGlLTtLPll~fg~~ap~a~~Lar~~g~er-~l~~~Llli~~G~~--iR~~~~------~~~L~~gt~l~G~gIav~nV  118 (395)
T COG2807          48 VAGLLTTLPLLAFGLFAPAAPRLARRFGEER-SLFLALLLIAAGIL--IRSLGG------LPLLFLGTLLAGAGIAVINV  118 (395)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHH-HHHHHHHHHHHHHH--HHhccc------HHHHHHHHHHHHhhHHHHHH
Confidence            5667677777777888999999999999874 55555544433322  123332      25577888999999999999


Q ss_pred             hhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          252 QLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       252 ~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      .++.++-+.||++.....+.|....++|++.+...+.-+.
T Consensus       119 LLPslIK~~Fpk~~~~mtglYs~sl~~~aaLaa~lavpla  158 (395)
T COG2807         119 LLPSLIKRDFPKRVGLMTGLYSTSLGAGAALAAALAVPLA  158 (395)
T ss_pred             hhhHHHHhhcccchhhHHhHHHHHHHHHHHHHhhhhhHHH
Confidence            9999999999998876777999888888888877775443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=97.00  E-value=0.0081  Score=57.27  Aligned_cols=185  Identities=14%  Similarity=0.134  Sum_probs=112.5

Q ss_pred             HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhccccccccccc-ch-hhHHHHHHHHHHHHHHHhhhhhhccCCCCh
Q 020441          124 SLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALG-VS-GVGGAMAVYGAFDAICSLAAGRLTTGLPSI  201 (326)
Q Consensus       124 ~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg-~~-~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~  201 (326)
                      ...++..+++.++..++........|...++.++.+  -+-.+.++ .+ --|.+.++.-.++++.-++.+|+.+|+|+.
T Consensus       359 ~v~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFL--fWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv  436 (618)
T KOG3762|consen  359 SVLADVGKVFASPHILLFFFVAVVMGAGVGLVFTFL--FWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHV  436 (618)
T ss_pred             HHHHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHH--HHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhccc
Confidence            344555588889888877767777787766654322  01111222 11 123334455556777788889999999988


Q ss_pred             hhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHH-----HHH
Q 020441          202 TFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQL-----KVW  275 (326)
Q Consensus       202 ~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~-----~~~  275 (326)
                      + ++.++......=++  ++++-.++     |..+.+-++=|+..+.....+-+.++...|.+ ++++=++.     -+.
T Consensus       437 ~-v~~lgLa~~~~Rf~--~~S~L~n~-----W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG  508 (618)
T KOG3762|consen  437 N-VMYLGLACNVGRFL--YYSYLQNP-----WMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLG  508 (618)
T ss_pred             c-eeeehhhHHHHHHH--HHHHhcCc-----hheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccC
Confidence            6 76666555443332  33444442     66666778888888888888888888888876 44444433     233


Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020441          276 QCASIAVVFFIGPYISLQAMLIVMVVGICVALVGILFLTIQVE  318 (326)
Q Consensus       276 ~~~g~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (326)
                      -++|+.|+.....++.......+..+.+++.++.+..+.+..+
T Consensus       509 ~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~iq~~l~  551 (618)
T KOG3762|consen  509 KGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISIQLLLK  551 (618)
T ss_pred             cchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            4777777777777665544444444445555555555544433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.95  E-value=0.0021  Score=49.65  Aligned_cols=82  Identities=18%  Similarity=0.162  Sum_probs=62.3

Q ss_pred             hhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhh
Q 020441            3 PASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLL   82 (326)
Q Consensus         3 ~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~   82 (326)
                      ..+++.|++.+..++....++.|..|          +++|++..|+.....+.+..+|+.+...+..      ..+|+..
T Consensus        56 ~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~  119 (141)
T TIGR00880        56 IARFLQGFGAAFALVAGAALIADIYP----------PEERGVALGLMSAGIALGPLLGPPLGGVLAQ------FLGWRAP  119 (141)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHCC----------hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc------ccchHHH
Confidence            46789999999999888888888888          4589999999999999999999988876643      2357766


Q ss_pred             HHHHHHHHHHHHHHHHHc
Q 020441           83 FIVFLGVITLGTILMCFL  100 (326)
Q Consensus        83 f~~~~~i~~l~~~l~~~l  100 (326)
                      |.+...+..++.+...++
T Consensus       120 ~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880       120 FLFLAILALAAFILLAFL  137 (141)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            766655555555554444

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.94  E-value=0.4  Score=45.94  Aligned_cols=160  Identities=12%  Similarity=0.031  Sum_probs=77.9

Q ss_pred             CcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCC--CCCCCc--hh--hHHHHHHHHHHHHHHHHHccCCcccccc---
Q 020441           39 GTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKG--GSTSGT--TL--LFIVFLGVITLGTILMCFLRKEEDKGEK---  109 (326)
Q Consensus        39 ~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~--~~~~~~--~~--~f~~~~~i~~l~~~l~~~l~~~~~~~~~---  109 (326)
                      +++-.|+++++....++|.++|+.+...+.+..+.  .....|  ..  +..+..+++.+...+..++.+...+.++   
T Consensus       160 ~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~  239 (472)
T TIGR00769       160 IDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYN  239 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc
Confidence            34567899999999999999999887665432111  111223  21  1221121222222333344322111110   


Q ss_pred             -chhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhccc----ccccccccchhhHHHHHHHHHHH
Q 020441          110 -ETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTK----EIVTPALGVSGVGGAMAVYGAFD  184 (326)
Q Consensus       110 -~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~----~~~~~~lg~~~~~~~~~~~gi~~  184 (326)
                       ++++++++++.+++|.+|.   ++++|-.+.+.-+.+..|....+....+-.    .+.++.---...|......|+..
T Consensus       240 ~~~~~~k~k~k~~~~es~k~---i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~t  316 (472)
T TIGR00769       240 PALKEKKVKPKMSTMESLKF---LVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVS  316 (472)
T ss_pred             hhhccccCCCCCCHHHHHHH---HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence             1011111224456665554   456777776665555555554444332211    11010000113344455666677


Q ss_pred             HHHHhhhhhhccCCCCh
Q 020441          185 AICSLAAGRLTTGLPSI  201 (326)
Q Consensus       185 ~i~~~~~G~l~d~~g~~  201 (326)
                      .+...+.+++.+|+|=+
T Consensus       317 l~~~l~~~~l~~~~Gw~  333 (472)
T TIGR00769       317 VTMMLLSGNVIRKYGWL  333 (472)
T ss_pred             HHHHHHHHHHHHHhhHH
Confidence            67777778888887744

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=96.85  E-value=0.49  Score=45.56  Aligned_cols=159  Identities=14%  Similarity=0.017  Sum_probs=77.0

Q ss_pred             cchhhhhHHHHHHHHHhHHHHHHHHHHHhc-CCC--CCCCCCchhhHH-HHHHHHHHHHHHH---HHccCCccc--c--c
Q 020441           40 TVIGSFNGEFWGMFASHQFVGNLITLAVLK-DDK--GGSTSGTTLLFI-VFLGVITLGTILM---CFLRKEEDK--G--E  108 (326)
Q Consensus        40 ~~~g~~~gif~~~~~~~~iiG~li~~~~~~-~~~--~~~~~~~~~~f~-~~~~i~~l~~~l~---~~l~~~~~~--~--~  108 (326)
                      ++-.|+.+.+....++|.++|+-+...+.. ..+  ......|..... .+..+.+.+.++.   .++.+...+  +  +
T Consensus       176 ~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~vl~~~~~~~  255 (491)
T PF03219_consen  176 EEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNVLTDPRFYP  255 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccch
Confidence            355688898988889999988888777655 111  111122322221 1222222332222   233321111  1  1


Q ss_pred             cchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhc----ccccccccccchhhHHHHHHHHHHH
Q 020441          109 KETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEF----TKEIVTPALGVSGVGGAMAVYGAFD  184 (326)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~----~~~~~~~~lg~~~~~~~~~~~gi~~  184 (326)
                      +++.+++++++.+++|.+|.   ++++|-...+.-+.+..|......-..+    -..+.++.-..+..|-.....|+..
T Consensus       256 ~~~~~kk~k~k~s~~es~k~---l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivt  332 (491)
T PF03219_consen  256 SAKKKKKKKPKMSLKESFKL---LLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVT  332 (491)
T ss_pred             hhhcccccCCCccHHHHHHH---HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH
Confidence            11122233344566666554   3457776666655555554433321111    1111111101123355556677777


Q ss_pred             HHHHhhhhhhccCCCCh
Q 020441          185 AICSLAAGRLTTGLPSI  201 (326)
Q Consensus       185 ~i~~~~~G~l~d~~g~~  201 (326)
                      .+...+.+++.+|+|=+
T Consensus       333 ii~~~l~~~iir~~GW~  349 (491)
T PF03219_consen  333 IIMMFLSSNIIRRFGWR  349 (491)
T ss_pred             HHHHHHHHHHHHHhhHH
Confidence            77777788888777743

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=96.80  E-value=0.032  Score=55.68  Aligned_cols=107  Identities=20%  Similarity=0.196  Sum_probs=68.3

Q ss_pred             HHHHHhhhhhhccC-CCChhhHHHHHHHHHHHHHHHHHhc-ccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhc
Q 020441          184 DAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILIN-YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILF  261 (326)
Q Consensus       184 ~~i~~~~~G~l~d~-~g~~~~i~~~g~i~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f  261 (326)
                      .-+.+.++|.+.|+ +|+++ .+..+.++..+...++.+. .++..+.......++..++..+|.+...+...+..++.+
T Consensus        36 ~yl~pilGg~iAD~~lG~~~-tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf  114 (654)
T TIGR00926        36 CYLTPLIGAIIADGWLGKFK-TILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQF  114 (654)
T ss_pred             HHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhc
Confidence            34556677888886 47765 5555655555443322221 111110000123456667788899999999999999999


Q ss_pred             cCC----chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          262 KHD----TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       262 ~~~----~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +++    +...|..+-...++|+.++..+.+++.
T Consensus       115 ~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~  148 (654)
T TIGR00926       115 EERQLSLRSRFFSFFYFAINAGSLISTIITPILR  148 (654)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            753    245788888888999988888877664

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.79  E-value=0.03  Score=53.91  Aligned_cols=110  Identities=14%  Similarity=0.007  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  251 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~  251 (326)
                      +.+.+..++-++.+++.++.|.+.||++..+.+...+.+..+..+ +.  .+..+     .+...++-+++|+..++.-+
T Consensus        82 ~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~-~~--~~~~s-----~~~~ialr~llGl~es~~wP  153 (495)
T KOG2533|consen   82 QLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGF-LT--AAVHS-----FPGLIALRFLLGLFESGGWP  153 (495)
T ss_pred             hhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHH-HH--HHHhh-----hHHHHHHHHHHHHHhcccch
Confidence            556777888888999999999999999844322222222222211 11  11122     24567788999999999999


Q ss_pred             hhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhh
Q 020441          252 QLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPY  289 (326)
Q Consensus       252 ~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~  289 (326)
                      ....+++..|.++ +...++.+...+++|+.++-++++.
T Consensus       154 ~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g  192 (495)
T KOG2533|consen  154 GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYG  192 (495)
T ss_pred             HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHH
Confidence            9999999999866 4667888887777777777777765

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=96.71  E-value=0.0085  Score=57.96  Aligned_cols=111  Identities=13%  Similarity=0.131  Sum_probs=85.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHH-HHHHHHHHhhhhHHhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLY-PLIMAALLGIGDGVLN  250 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~l~G~~d~~~~  250 (326)
                      ++.++..+......+.+|+.+.+.||+|.|. +++.|.++....+++.  .+..+     .+. .+...++.|+|-++..
T Consensus        82 ~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~-v~i~G~~v~~~g~~ls--sF~~~-----i~~l~lt~gvi~G~G~~~~~  153 (509)
T KOG2504|consen   82 QIAWIGSLLLGVYLLAGPLVSALCNRFGCRT-VMIAGGLVAALGLLLS--SFATS-----LWQLYLTFGVIGGLGLGLIY  153 (509)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHhhcCchH-HHHHHHHHHHHHHHHH--HHHhh-----HHHHHHHHHHHhhccchhhh
Confidence            4666666666677788999999999999994 8888888877766542  23332     233 3455788899999999


Q ss_pred             hhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          251 TQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       251 ~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .....+++.+|+++|..|-++-....++|..+-+.+..++
T Consensus       154 ~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l  193 (509)
T KOG2504|consen  154 LPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYL  193 (509)
T ss_pred             cchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHH
Confidence            9999999999999988788888888888888777777665

>TIGR00788 fbt folate/biopterin transporter

Probab=96.68  E-value=0.063  Score=51.50  Aligned_cols=119  Identities=11%  Similarity=0.115  Sum_probs=66.5

Q ss_pred             ccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCCC-----ChhhHHHHHHHHHH-HHHHHHHhcccCCCCCcchHHH
Q 020441          164 VTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGLP-----SITFIVSGGAIAQV-VVFLWILINYSVTSGVLGTLYP  235 (326)
Q Consensus       164 ~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~g-----~~~~i~~~g~i~~~-~~~~~~~l~~~~~~~~~~~~~~  235 (326)
                      ..+.+|++  +++....+..+...+ .+++|.++||++     || +.++.+.++.. ..  +..+...++.    ....
T Consensus        52 l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr-~~l~~~~~l~~~~~--~~~l~~~~~~----~~~~  123 (468)
T TIGR00788        52 LTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKR-WYLVLSGLLGSAIL--YGLLPGKVSS----AKVA  123 (468)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccch-HHHHHHHHHHHHHH--HHhcccccch----HHHH
Confidence            34456654  565556666666666 455999999986     44 45555555442 22  1123322321    1223


Q ss_pred             HHHHHHHhhhhHHhhhhhHhhHHhhccCCchh---hhhHHHHHHHHHHHHHHHHhhhh
Q 020441          236 LIMAALLGIGDGVLNTQLSALLGILFKHDTEG---AFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       236 ~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~---~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .+..++.+++.+......-++..|..+++++.   ..+..-...++|..++..++..+
T Consensus       124 ~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l  181 (468)
T TIGR00788       124 AAFIFLAALAKALYDVLVDSLYSERIRESPSAGPSLVSWMWGASATGGLISSLLGGPL  181 (468)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHHHHHHHHHHHHHHHHHHH
Confidence            33566777788887788888999988844332   22211122345666655555544

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=96.58  E-value=0.11  Score=49.90  Aligned_cols=89  Identities=13%  Similarity=0.010  Sum_probs=53.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhh
Q 020441          173 VGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQ  252 (326)
Q Consensus       173 ~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~  252 (326)
                      .++...+.++.+++..|+.|-++|+.++|+..+.....+...+..... ..+|+.    ++...++.++--++...-+..
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~-~v~~~~----~~~~~~l~iia~v~~~~~~vf  146 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLW-FVSPGQ----WWLALVLFIIANVGYEASNVF  146 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHH-HhCcch----HHHHHHHHHHHHHHHHHHHHH
Confidence            345667888889999999999999988776444333333222222211 224442    233344444444566666777


Q ss_pred             hHhhHHhhccCCch
Q 020441          253 LSALLGILFKHDTE  266 (326)
Q Consensus       253 ~~~il~~~f~~~~~  266 (326)
                      .++++-++.++++.
T Consensus       147 yna~LP~la~~~~~  160 (477)
T PF11700_consen  147 YNAYLPDLARPEPR  160 (477)
T ss_pred             HHHHhHhhcCCChh
Confidence            77888888766543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.32  E-value=0.00018  Score=68.30  Aligned_cols=113  Identities=12%  Similarity=0.052  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhh
Q 020441          173 VGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQ  252 (326)
Q Consensus       173 ~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~  252 (326)
                      .+......-++..+|+++.|.+.||+|||+ .+..+.++..+..++  ....++.  .++....+.-++.|++.+...+.
T Consensus        48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~-~~~~~~~~~~i~~~~--~~~~~~~--~~~~~~~~~R~~~G~~~g~~~~~  122 (451)
T PF00083_consen   48 SSLLTSSFFIGAIVGALIFGFLADRYGRKP-ALIISALLMIIGSIL--IAFAPSY--NNFWMLLIGRFLIGFGIGGAYVV  122 (451)
T ss_pred             HHHHHHHHHhhhcccccccccccccccccc-ccccccccccccccc--ccccccc--ccccccccccccccccccccccc
Confidence            344556666778899999999999999995 666666555544332  2233310  00245566678899999999999


Q ss_pred             hHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          253 LSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       253 ~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ...++.|..|++ |....+..+....+|..++..+...+
T Consensus       123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~  161 (451)
T PF00083_consen  123 SPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV  161 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccc
Confidence            999999999876 44445588888888888877776543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.27  E-value=0.12  Score=48.58  Aligned_cols=117  Identities=14%  Similarity=0.029  Sum_probs=71.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccC-CCCCcchH--HHHHHHHHHhhhhH
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSV-TSGVLGTL--YPLIMAALLGIGDG  247 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~-~~~~~~~~--~~~~~~~l~G~~d~  247 (326)
                      +..-+...+|.++.+..++..-++.|++|-|. ..+++.++..+....-.+.-.| -++.  ++  +.+....+-+..+-
T Consensus        79 ~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~-a~llgt~ln~iGa~Ir~iss~p~v~~~--f~~~l~~~Gq~iaa~Aq~  155 (480)
T KOG2563|consen   79 SAADWLSMIYMVVSVPFGFAAMWILDKFGLRT-ALLLGTVLNGIGAWIRLISSLPFVPPL--FRRPLTHTGQSIAAAAQP  155 (480)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHhhcccchHH-HHHHHHHHHHHHHHHhhhccCcccccc--chhhhhHHhHHHHHHhhh
Confidence            35667788898888988888889999999884 6677777766433211122111 0010  12  23333344344443


Q ss_pred             HhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          248 VLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       248 ~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .....-.-+-+..||++ +..|-+.--+.+-+|.++++.+.+.+
T Consensus       156 Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppil  199 (480)
T KOG2563|consen  156 FILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPIL  199 (480)
T ss_pred             HhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcccee
Confidence            33333233344457654 56676777777789999999998876

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.24  E-value=0.28  Score=45.77  Aligned_cols=59  Identities=12%  Similarity=0.068  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHhhhhHHhhhhhHhhHHhhccC-CchhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          232 TLYPLIMAALLGIGDGVLNTQLSALLGILFKH-DTEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       232 ~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~-~~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .+..+++.+.-|+..+..+......+.+..|+ +||-+.+.-....+.|..++-+++-.+
T Consensus       335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            36677778888998888887777777776664 468788888888888888888776443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.02  E-value=1.4  Score=41.69  Aligned_cols=250  Identities=10%  Similarity=0.042  Sum_probs=121.0

Q ss_pred             CcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchhhHHHHHHHHHHHHHH-HHHccCC----------cccc
Q 020441           39 GTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTLLFIVFLGVITLGTIL-MCFLRKE----------EDKG  107 (326)
Q Consensus        39 ~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~~f~~~~~i~~l~~~l-~~~l~~~----------~~~~  107 (326)
                      ++...+.+...--+-+.+.++|+++...+....      +.+.-.++..+..+++.++ .+++++.          ++++
T Consensus       144 ~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~------s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~  217 (432)
T PF06963_consen  144 PGALARMNATMRRIDLFCKLLAPLFVGLLMTFA------SPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSS  217 (432)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCc
Confidence            557788888899999999999999987775422      2232233333344444433 3333211          1111


Q ss_pred             ccchh--hh---chhhhhHHHHHHHHHHHh-hcchhhHHHHHHHHHHHHHHHHHH------hhcccccccccccc--hhh
Q 020441          108 EKETA--DA---SVNFYSYLVSLSKSITTL-LADVRMLLIIPLFAYSGLQQAFVW------AEFTKEIVTPALGV--SGV  173 (326)
Q Consensus       108 ~~~~~--~~---~~~~~~~~~~~~k~~~~~-~~~~~~lll~p~~~~~g~~~~f~~------~~~~~~~~~~~lg~--~~~  173 (326)
                      +++..  ++   ++.+.....+.+++.++. ..+++...-=|. +..++..++.+      +..+..|.... |.  ..+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~v-flas~alalLY~TVLsf~~lmt~yl~~~-G~s~~~i  295 (432)
T PF06963_consen  218 ESESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPV-FLASFALALLYFTVLSFGGLMTAYLKSQ-GYSPSVI  295 (432)
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHH-HHHHHHHHHHHHHHhcCcHHHHHHHHHC-CCCHHHH
Confidence            11100  00   001111122222222222 233444332222 22222222211      11122332222 44  366


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHH-hcccCCCC--CcchHHHHHHHHHHhhhhHHhh
Q 020441          174 GGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL-INYSVTSG--VLGTLYPLIMAALLGIGDGVLN  250 (326)
Q Consensus       174 ~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~-l~~~~~~~--~~~~~~~~~~~~l~G~~d~~~~  250 (326)
                      |..-.+..+.+..+.++..++.+|+|..+ .=..+...+..+..+.. -.|.+.++  .......+...++==+|--++-
T Consensus       296 gi~R~~gav~Gl~gT~~~p~l~~riGlvr-~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fD  374 (432)
T PF06963_consen  296 GIFRGLGAVFGLLGTWVYPWLMKRIGLVR-AGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFD  374 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchh-hHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhh
Confidence            77777777788888888899999998664 33445555554443221 12333322  1000111111111111222233


Q ss_pred             hhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 020441          251 TQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYISLQAMLI  297 (326)
Q Consensus       251 ~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~~~~~~~  297 (326)
                      -...-++.|..|++ |....+.-...|++...+.|...-.++-..+..
T Consensus       375 L~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~  422 (432)
T PF06963_consen  375 LAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFG  422 (432)
T ss_pred             HHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcC
Confidence            34455666777866 455566999999999999888876555333333

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=95.86  E-value=0.05  Score=50.99  Aligned_cols=146  Identities=14%  Similarity=0.122  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHH--hhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhcc----CCCChhhHHHHHHHHHHHH
Q 020441          144 LFAYSGLQQAFVW--AEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTT----GLPSITFIVSGGAIAQVVV  215 (326)
Q Consensus       144 ~~~~~g~~~~f~~--~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d----~~g~~~~i~~~g~i~~~~~  215 (326)
                      .....|.+.+.-.  ++.++ | ...+|+.  +.+.+-.+.-+...+.+|+.|..+|    |+|||+|.+..+....++.
T Consensus        38 ~~ia~Gvqf~wA~elsy~tP-y-l~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~  115 (498)
T KOG0637|consen   38 ASIAAGVQFGWALELSYLTP-Y-LQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVS  115 (498)
T ss_pred             HHHHHHHHHHHHHHhccccH-H-HHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHH
Confidence            3455565543322  23333 1 2235553  4455556666777788899999998    4788877766665554444


Q ss_pred             HHHHH------hcccCCCCC-cchH---HHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chh-hhhHHHHHHHHHHHHH
Q 020441          216 FLWIL------INYSVTSGV-LGTL---YPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEG-AFAQLKVWQCASIAVV  283 (326)
Q Consensus       216 ~~~~~------l~~~~~~~~-~~~~---~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~-~fa~~~~~~~~g~~i~  283 (326)
                      .+++.      ....+++.- ..+.   ...+-.-++-+.....|+..-++++++..++ +.. +.+.+.++.++|..++
T Consensus       116 l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLG  195 (498)
T KOG0637|consen  116 LFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLG  195 (498)
T ss_pred             HhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceee
Confidence            33211      011122111 0011   1222233445555567788899999998643 444 8999999999999999


Q ss_pred             HHHhhhhh
Q 020441          284 FFIGPYIS  291 (326)
Q Consensus       284 ~~i~~~~~  291 (326)
                      |...++..
T Consensus       196 Y~~g~y~~  203 (498)
T KOG0637|consen  196 YALGSYLG  203 (498)
T ss_pred             eecccccC
Confidence            99997764

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.86  E-value=0.053  Score=50.29  Aligned_cols=88  Identities=18%  Similarity=0.149  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-c---hhhhhHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHH
Q 020441          233 LYPLIMAALLGIGDGVLNTQLSALLGILFKHD-T---EGAFAQLKVWQCASIAVVFFIGPYIS----LQAMLIVMVVGIC  304 (326)
Q Consensus       233 ~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~---~~~fa~~~~~~~~g~~i~~~i~~~~~----~~~~~~~~~~~~~  304 (326)
                      ...++..++.++|.+...+.+.++.++.|+++ +   +..|+.|-...++|+.++....+++.    ...-..+..+..+
T Consensus        34 ~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~  113 (372)
T PF00854_consen   34 GLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGML  113 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHH
Confidence            35666677889999999999999999999865 2   45899999999999999999998885    3333344445556


Q ss_pred             HHHHHHHHHHHHHhhc
Q 020441          305 VALVGILFLTIQVEKA  320 (326)
Q Consensus       305 ~~~~~~~~~~~~~~~~  320 (326)
                      ++++.+..-.++.+++
T Consensus       114 ~~~~~f~~~~~~y~~~  129 (372)
T PF00854_consen  114 LALIVFLSGRKRYRKV  129 (372)
T ss_dssp             HHHHHHHCCCCTT--S
T ss_pred             HHHHHHHhCCcCCcCc
Confidence            6666665544444443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF12832 MFS_1_like: MFS_1 like family

Probab=95.82  E-value=0.037  Score=38.87  Aligned_cols=37  Identities=19%  Similarity=0.106  Sum_probs=31.9

Q ss_pred             ccchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhH
Q 020441          168 LGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFI  204 (326)
Q Consensus       168 lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i  204 (326)
                      ++..++|.++.+..+...++.+++|.+.||.++++.+
T Consensus        32 l~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~   68 (77)
T PF12832_consen   32 LSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVI   68 (77)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence            3345899999999999999999999999999988633

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=95.12  E-value=0.34  Score=44.62  Aligned_cols=115  Identities=11%  Similarity=-0.095  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHh-cccCCCCCcchHHHHHHHHHHhhhhHHhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI-NYSVTSGVLGTLYPLIMAALLGIGDGVLN  250 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~l~G~~d~~~~  250 (326)
                      +..++....-.+..+++..+|...|++|||+ -....++.....-   ++ ...|+     +..+.+...+||++-+. .
T Consensus       114 q~~llt~~v~~gmllga~~w~l~~d~~grr~-~f~~T~l~t~v~~---~is~~spn-----f~~L~~f~~l~~~g~gg-~  183 (528)
T KOG0253|consen  114 QAPLLTLSVFLGMLVGAMVWGLSADTIGRRK-GFNLTFLVTGVFG---VISGASPN-----FASLCVFRALWGFGVGG-L  183 (528)
T ss_pred             hhhHHHHHHHhhhhhhhhhhheehhhhhcch-hhhhhHHHHHHHH---HhhcCCCC-----eehhhHHHHHHhccCCC-c
Confidence            4455566666778899999999999999985 4443333322221   12 23343     35567778899999998 8


Q ss_pred             hhhHhhHHhhccCC-c--hh-hhhHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 020441          251 TQLSALLGILFKHD-T--EG-AFAQLKVWQCASIAVVFFIGPYISLQAML  296 (326)
Q Consensus       251 ~~~~~il~~~f~~~-~--~~-~fa~~~~~~~~g~~i~~~i~~~~~~~~~~  296 (326)
                      ++..++..+.-|.. +  .. .++.+-..|....+++++.-+.+.+.+-.
T Consensus       184 pv~~~~yle~lp~~~r~~~~V~~~~waig~v~ea~law~vm~~~gwr~~l  233 (528)
T KOG0253|consen  184 PVDSAIYLEFLPSSHRWLLTVMSFFWAIGQVFEALLAWGVMSNFGWRYLL  233 (528)
T ss_pred             cHhHHHHHHhccCcCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            88999999998864 2  12 34577777888888888888777655433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=95.04  E-value=0.62  Score=44.60  Aligned_cols=102  Identities=13%  Similarity=0.121  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHH
Q 020441          179 VYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLG  258 (326)
Q Consensus       179 ~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~  258 (326)
                      ..|+...+.++..|.++||+|||. .+....+...+-- +. +.+..       +..++..-+.| +.+.......+..+
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~-~L~~~~~~~~l~~-~~-~~~~~-------~~~~~~~~l~g-~~~~~~s~~~a~va  138 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKV-VLLLPLFGTILPA-LC-LLFQG-------YWFFLLLGLSG-GFSAIFSVGFAYVA  138 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhh-hHHHHHHHHHHhH-HH-HHHHH-------HHHhhhccccc-chhhhhhhhhhhee
Confidence            457788899999999999999994 4333322211100 00 01111       11222222222 34445566677777


Q ss_pred             hhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          259 ILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       259 ~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +...++ |...++..+..-.++..+++..+.++.
T Consensus       139 dis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~  172 (463)
T KOG2816|consen  139 DISSEEERSSSIGLLSGTFGAGLVIGPALGGYLV  172 (463)
T ss_pred             eccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            776655 556788888877888888888887664

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=94.97  E-value=0.76  Score=39.64  Aligned_cols=113  Identities=22%  Similarity=0.186  Sum_probs=70.0

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  251 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~  251 (326)
                      ..++....+.+...++.++.|++.||.|||+ .+..+........+..  ...++.   ......+..+..|++.+...+
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~g~~~~~~~~  113 (338)
T COG0477          40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRK-VLIIGLLLFLLGTLLL--ALAPNV---GLALLLILRLLQGLGGGGLLP  113 (338)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhccccccchH-HHHHHHHHHHHHHHHH--HhCccc---hHHHHHHHHHHHHhhhHHHHH
Confidence            3456667777777888899999999998884 5555543312211111  111111   124445555557899998889


Q ss_pred             hhHhhHHhhccC--CchhhhhHHHH-HHHHHHHHHHHHhhhh
Q 020441          252 QLSALLGILFKH--DTEGAFAQLKV-WQCASIAVVFFIGPYI  290 (326)
Q Consensus       252 ~~~~il~~~f~~--~~~~~fa~~~~-~~~~g~~i~~~i~~~~  290 (326)
                      ...+++.+.+|+  ++....+.... ...+|..+++.+...+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (338)
T COG0477         114 VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLL  155 (338)
T ss_pred             HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999996  44445555555 4556666666554433

>TIGR01272 gluP glucose/galactose transporter

Probab=94.87  E-value=0.27  Score=44.38  Aligned_cols=60  Identities=17%  Similarity=0.129  Sum_probs=51.1

Q ss_pred             hHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          232 TLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       232 ~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +....+..++.|.|.+..|+..+.+++.+.|+++ +...+..+..+++|+.+++.+.+.+.
T Consensus        10 ~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i   70 (310)
T TIGR01272        10 YVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI   70 (310)
T ss_pred             HHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3456777889999999999999999999988764 55788999999999999999998553

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=94.51  E-value=4.5  Score=38.47  Aligned_cols=88  Identities=17%  Similarity=0.188  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHH--hcccCCC--C--CcchHHHHHHHHHHhhhh
Q 020441          173 VGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL--INYSVTS--G--VLGTLYPLIMAALLGIGD  246 (326)
Q Consensus       173 ~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~--l~~~~~~--~--~~~~~~~~~~~~l~G~~d  246 (326)
                      ......++.++..+|..+..+..- .+++...+....++-.+ +++.+  .+..|+.  +  ....+..++..+++|+..
T Consensus       309 ~~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~i-FIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn  386 (437)
T TIGR00939       309 PIICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVL-FIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN  386 (437)
T ss_pred             HHHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHH-HHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence            345668899999999886654321 11111112223333332 22322  2333211  1  111255667788889888


Q ss_pred             HHhhhhhHhhHHhhcc
Q 020441          247 GVLNTQLSALLGILFK  262 (326)
Q Consensus       247 ~~~~~~~~~il~~~f~  262 (326)
                      |-..+.......+..+
T Consensus       387 Gy~~s~~m~~~p~~v~  402 (437)
T TIGR00939       387 GYLGSLSMCLAPRQVD  402 (437)
T ss_pred             hHHHHHHHHhcCCCCC
Confidence            7766655444444444

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=93.91  E-value=0.78  Score=36.96  Aligned_cols=94  Identities=20%  Similarity=0.154  Sum_probs=57.9

Q ss_pred             HHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccC
Q 020441          184 DAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH  263 (326)
Q Consensus       184 ~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~  263 (326)
                      .++.+++.+.+.+++|.|. .+.+|.+....- ...  .+.|++     +..+...++.|++.+..-+.....+.+..++
T Consensus        50 ~~~s~l~~P~iv~~lg~K~-sm~lg~~~y~~y-~~~--~~~~~~-----~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~  120 (156)
T PF05978_consen   50 FAISCLFAPSIVNKLGPKW-SMILGSLGYAIY-IAS--FFYPNS-----YTLYPASALLGFGAALLWTAQGTYLTSYSTE  120 (156)
T ss_pred             HHHHHHhHHHHHHHHhhHH-HHHHHHHHHHHH-HHH--HHhhhH-----HHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence            3445555566667888884 666676665532 222  233442     5678888999999999888777788777654


Q ss_pred             C-chhh----hhHHHHHHHHHHHHHHHH
Q 020441          264 D-TEGA----FAQLKVWQCASIAVVFFI  286 (326)
Q Consensus       264 ~-~~~~----fa~~~~~~~~g~~i~~~i  286 (326)
                      + ++.-    +++++..+-.|..+.+++
T Consensus       121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  121 ETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 2322    335555555555555544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=93.69  E-value=0.58  Score=43.70  Aligned_cols=89  Identities=19%  Similarity=0.097  Sum_probs=60.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCC-CCCcchHHHHHHHHHHhhhhHHh
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVT-SGVLGTLYPLIMAALLGIGDGVL  249 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~G~~d~~~  249 (326)
                      +..++...+.++..++.+|+.|.+.|+.|+|++.+....+.......  .+.+.|+ ++   ++...+..++-.++...-
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~--~L~~i~~~s~---~~~~l~~~il~~i~~~~s  132 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTF--LLWFIPPGSY---LLLLLLFLILASIGFEFS  132 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHH--HHHHhCCCch---HHHHHHHHHHHHHhcchh
Confidence            46788899999999999999999999999776544333222222211  1233333 21   244556667777788888


Q ss_pred             hhhhHhhHHhhccCC
Q 020441          250 NTQLSALLGILFKHD  264 (326)
Q Consensus       250 ~~~~~~il~~~f~~~  264 (326)
                      +..-++++.+..+++
T Consensus       133 ~Vfyds~L~~~~~k~  147 (438)
T COG2270         133 NVFYDSMLPRLTTKD  147 (438)
T ss_pred             heehhhHhhhhcCcc
Confidence            888899999888764

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=93.48  E-value=2  Score=37.49  Aligned_cols=80  Identities=11%  Similarity=0.015  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHhhhhhhccC-CCChhhHHH----HHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhh
Q 020441          177 MAVYGAFDAICSLAAGRLTTG-LPSITFIVS----GGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  251 (326)
Q Consensus       177 ~~~~gi~~~i~~~~~G~l~d~-~g~~~~i~~----~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~  251 (326)
                      .+++-.+..+|....|+.++. ..||+ .+.    .+.++..+..+..+ ...++.. .+....++..++-|++--..|+
T Consensus       147 ~I~fv~g~~~G~~~ig~~nkt~~kRk~-fi~~~~~~gi~~~~l~~~~~~-~~g~~~~-~~~~~f~I~~Fl~G~f~WgiQ~  223 (267)
T PF07672_consen  147 QILFVAGYFLGPFTIGLWNKTNYKRKP-FIHFIISLGIVFFVLSIVVVY-FVGPGNA-AGFAFFYIFGFLAGFFLWGIQG  223 (267)
T ss_pred             HHHHHHHHhhhceeeccchhhhhhhhh-HHHHHHHHHHHHHHHHHHHHH-HhCcchH-HHHHHHHHHHHHHHHHHHhhhH
Confidence            344444455666777877653 34443 322    22333322222211 2233321 0113345556666666666666


Q ss_pred             hhHhhHHh
Q 020441          252 QLSALLGI  259 (326)
Q Consensus       252 ~~~~il~~  259 (326)
                      .+--+=-|
T Consensus       224 ViL~lPhE  231 (267)
T PF07672_consen  224 VILNLPHE  231 (267)
T ss_pred             HHhcChhh
Confidence            55544433

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=92.83  E-value=0.15  Score=49.00  Aligned_cols=76  Identities=24%  Similarity=0.371  Sum_probs=53.8

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHH-HHhHHHHHHHHHHHhcCCCCCCCCCch
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMF-ASHQFVGNLITLAVLKDDKGGSTSGTT   80 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~-~~~~iiG~li~~~~~~~~~~~~~~~~~   80 (326)
                      +|--++||+..+..|.+...|+...+|+          +.+....|++.+.+ .+|--+|.+|+-.+....      +-|
T Consensus       463 LPieilqgit~aliWaa~~sY~s~vaPp----------~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f------g~~  526 (618)
T KOG3762|consen  463 LPIEILQGITHALIWAAIISYASHVAPP----------GLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF------GAR  526 (618)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHhhCCC----------cchHHHHHHHHHHhcccCcchhhhhhhhhheee------hhH
Confidence            5677899999999999999999999994          56667777777776 667677777765543321      235


Q ss_pred             hhHHHHHHHHHHHH
Q 020441           81 LLFIVFLGVITLGT   94 (326)
Q Consensus        81 ~~f~~~~~i~~l~~   94 (326)
                      ..|-++. ++++..
T Consensus       527 ttf~~~g-iAcl~~  539 (618)
T KOG3762|consen  527 TTFRIFG-IACLVT  539 (618)
T ss_pred             HHHHHHH-HHHHHH
Confidence            5566554 444443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=92.17  E-value=11  Score=36.04  Aligned_cols=32  Identities=13%  Similarity=-0.094  Sum_probs=24.4

Q ss_pred             cchhhhhHHHHHHHHHhHHHHHHHHHHHhcCC
Q 020441           40 TVIGSFNGEFWGMFASHQFVGNLITLAVLKDD   71 (326)
Q Consensus        40 ~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~   71 (326)
                      ++-.|+.+.|....+.+..+++.+....++..
T Consensus       180 ~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~  211 (509)
T COG3202         180 EEAKRFYPLFGLGANISLLLSGEVTSWLSKHR  211 (509)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence            35568888888888888888888887776643

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=91.65  E-value=13  Score=37.41  Aligned_cols=63  Identities=17%  Similarity=0.098  Sum_probs=40.3

Q ss_pred             CcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCC-CCCCCCchhhHHHHHHHHHHHHHHHHHcc
Q 020441           39 GTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK-GGSTSGTTLLFIVFLGVITLGTILMCFLR  101 (326)
Q Consensus        39 ~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~-~~~~~~~~~~f~~~~~i~~l~~~l~~~l~  101 (326)
                      ++++-+++.+|+...++|..++..+...+-.... .+...+|...|.+..++++++.+++..-+
T Consensus       119 ~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~  182 (654)
T TIGR00926       119 LSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGS  182 (654)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence            3457788888888888888888777655532211 11234677778777766777666655433

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.00  E-value=1.2  Score=39.23  Aligned_cols=115  Identities=11%  Similarity=0.078  Sum_probs=64.0

Q ss_pred             cccchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhh
Q 020441          167 ALGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGD  246 (326)
Q Consensus       167 ~lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d  246 (326)
                      ..|..++|...++.--..++.+.+.|.+.|+.|||+.     .+...+.+++..+..+ +++   +...++.-++=|+..
T Consensus        68 gFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKra-----cvtycitYiLsCiTKh-Spq---YkVLmVGR~LGGiaT  138 (454)
T KOG4332|consen   68 GFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA-----CVTYCITYILSCITKH-SPQ---YKVLMVGRVLGGIAT  138 (454)
T ss_pred             CccCCccceeeecccchHHHHHHHHHHHHhhhccccc-----eeeehHHHHHHHHhhc-CCc---eEEEeehhhhhhHHH
Confidence            3455556555544444456677888999999999962     2333333333223221 221   334455566667776


Q ss_pred             HHhh-hhhHhhHHhhccCCc------hhhhh-HHHHHHHHHHHHHHHHhhhh
Q 020441          247 GVLN-TQLSALLGILFKHDT------EGAFA-QLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       247 ~~~~-~~~~~il~~~f~~~~------~~~fa-~~~~~~~~g~~i~~~i~~~~  290 (326)
                      +... ..-.|+++|.-.++.      ...|+ ..-+++.+-+.++...+..+
T Consensus       139 sLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~l  190 (454)
T KOG4332|consen  139 SLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLL  190 (454)
T ss_pred             HHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            6654 455788888753321      22466 44466666666665555444

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=90.69  E-value=8.9  Score=35.89  Aligned_cols=87  Identities=20%  Similarity=0.211  Sum_probs=43.7

Q ss_pred             hhHHHHHH-HHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHH--hcccCCCCC-cchHHHHHHHHHHhhhhH
Q 020441          172 GVGGAMAV-YGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWIL--INYSVTSGV-LGTLYPLIMAALLGIGDG  247 (326)
Q Consensus       172 ~~~~~~~~-~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~--l~~~~~~~~-~~~~~~~~~~~l~G~~d~  247 (326)
                      .......+ +.+...+|.+...++.+.- ||. +. +..++... +++.+  .+++|-+.. .+.+...+...++|+..|
T Consensus       283 y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~-l~-i~v~lR~l-fiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnG  358 (406)
T KOG1479|consen  283 YALLLVFLSFNVFDLIGSILAALLTWPD-PRK-LT-IPVLLRLL-FIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNG  358 (406)
T ss_pred             hHHHHHHHHhHHHHHhhhhhhhcccCCC-Cce-eh-HHHHHHHH-HHHHHHHhccCCCCceecCchHHHHHHHHHHhccc
Confidence            44555556 8999999988777765543 332 22 22223222 22222  355443221 112455666677777766


Q ss_pred             HhhhhhHhhHHhhcc
Q 020441          248 VLNTQLSALLGILFK  262 (326)
Q Consensus       248 ~~~~~~~~il~~~f~  262 (326)
                      =..+.....-.+..|
T Consensus       359 Yltsl~m~~aPk~v~  373 (406)
T KOG1479|consen  359 YLTSLIMMYAPKQVK  373 (406)
T ss_pred             hHhhheehhcCCCCC
Confidence            544443333333343

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=90.08  E-value=8.1  Score=36.77  Aligned_cols=31  Identities=19%  Similarity=0.365  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC
Q 020441          233 LYPLIMAALLGIGDGVLNTQLSALLGILFKHD  264 (326)
Q Consensus       233 ~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~  264 (326)
                      +..+++.++.|++++..|+...++.+ .+|++
T Consensus       107 ~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~  137 (437)
T TIGR00939       107 VTTMASVVIINSGMALLQGSLFGLAG-VFPST  137 (437)
T ss_pred             HHHHHHHHHHHhhhhhhcccchhhcc-cCCHH
Confidence            45567778889999999999999987 46754

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=86.08  E-value=34  Score=32.98  Aligned_cols=34  Identities=12%  Similarity=-0.105  Sum_probs=20.8

Q ss_pred             hhhHHHHHHHHHHHHH-HHhhhhhhccCCCChhhHH
Q 020441          171 SGVGGAMAVYGAFDAI-CSLAAGRLTTGLPSITFIV  205 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i-~~~~~G~l~d~~g~~~~i~  205 (326)
                      +.+.+.-...-+...+ ..++.+++++|.+|++ ++
T Consensus        43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~-lf   77 (472)
T TIGR00769        43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEA-LF   77 (472)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-hH
Confidence            4444444333333333 3788899999999885 43

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.74  E-value=2.6  Score=40.19  Aligned_cols=101  Identities=22%  Similarity=0.146  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhH
Q 020441          178 AVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALL  257 (326)
Q Consensus       178 ~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il  257 (326)
                      .+-....++.+++.+.+.|+.++| ..+.+++..+..... .++  .+++     +..++..+++|+|++.+.+-.-..+
T Consensus        57 aiiY~~ftv~~l~~psiv~~i~~K-~~lv~ga~~y~~f~~-gfl--~~N~-----y~~yfssallG~Gaallw~GqG~yl  127 (461)
T KOG3098|consen   57 AIIYAFFTVSCLFAPSIVNFLGPK-WALVIGATCYAAFPL-GFL--FPNS-----YYLYFSSALLGFGAALLWTGQGGYL  127 (461)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhhHH-HHHHHHhHHHHHHHH-HHH--hcch-----HHHHHHHHHhhhhHHheecccceeh
Confidence            344445667778888888999988 477777777664332 222  2332     6789999999999999665556666


Q ss_pred             HhhccCC-chh----hhhHHHHHHHHHHHHHHHHh
Q 020441          258 GILFKHD-TEG----AFAQLKVWQCASIAVVFFIG  287 (326)
Q Consensus       258 ~~~f~~~-~~~----~fa~~~~~~~~g~~i~~~i~  287 (326)
                      .+..+++ .+.    -++++++..-.|+.+.+.+.
T Consensus       128 t~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~  162 (461)
T KOG3098|consen  128 TSNSTRETIERNISIFWAIGQSSLIIGGIILFIYF  162 (461)
T ss_pred             hhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeee
Confidence            6776654 243    35677777777877777665

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=82.47  E-value=4.3  Score=38.53  Aligned_cols=54  Identities=6%  Similarity=-0.032  Sum_probs=39.1

Q ss_pred             HhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhc
Q 020441            6 LYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLK   69 (326)
Q Consensus         6 ~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~   69 (326)
                      ++..+....-|......++|.+|+          ..-|..+++.-++.++|..++..++..+..
T Consensus       326 ~l~~~~~~i~~mP~lvl~a~lcP~----------G~Egt~yall~s~~Nlg~~~s~~lg~~l~~  379 (433)
T PF03092_consen  326 ILEEVIGMIAFMPSLVLAARLCPK----------GSEGTVYALLASFSNLGSSVSSTLGAFLME  379 (433)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC----------CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555565566667888884          567888898888889988888888877654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=82.39  E-value=26  Score=34.18  Aligned_cols=77  Identities=17%  Similarity=0.179  Sum_probs=40.7

Q ss_pred             hhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccc-------hhhHHHHHHHHHHHHHHHhh
Q 020441          118 FYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV-------SGVGGAMAVYGAFDAICSLA  190 (326)
Q Consensus       118 ~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~-------~~~~~~~~~~gi~~~i~~~~  190 (326)
                      +..+||..=-+   +++.|+...+.-.+.-+|.+..+.....   ..-..+|.       .-......++.++..+++..
T Consensus       243 ee~GWKlvhgD---VFR~P~~~~lls~lvG~G~Qll~~~~~~---~~~a~~g~~~~~~rg~l~t~~i~~y~~~~~iaGy~  316 (521)
T PF02990_consen  243 EESGWKLVHGD---VFRPPKHPMLLSALVGTGIQLLFMALVT---LFFAALGFLSPNNRGSLLTAAIILYALTSFIAGYV  316 (521)
T ss_pred             cccchhhhhHH---HhcCcCCchHHHhHhcchhhhhHHHHHH---HHHHHhhhccccCcchHHHHHHHHHHHHhhHHHHH
Confidence            44566654333   5667766555445556666544332110   00011121       12334456778888888899


Q ss_pred             hhhhccCCCC
Q 020441          191 AGRLTTGLPS  200 (326)
Q Consensus       191 ~G~l~d~~g~  200 (326)
                      ++++.+.++.
T Consensus       317 S~~~yk~~~g  326 (521)
T PF02990_consen  317 SARLYKSFGG  326 (521)
T ss_pred             HHHHHHHcCC
Confidence            9888765554

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	326
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 31/204 (15%), Positives = 54/204 (26%), Gaps = 78/204 (38%)

Query: 18  GEG-TYLTAAALSHASNHKLHEGTVIGSFNGE-FWGMFASHQFVGNLITLAVLKDDKGGS 75
           G G T++         ++K+         + + FW            + L          
Sbjct: 160 GSGKTWVALDVCL---SYKVQC-----KMDFKIFW------------LNL-------KNC 192

Query: 76  TSGTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLAD 135
            S  T+L             ++  L  + D      +D S N    + S+   +  LL  
Sbjct: 193 NSPETVL------------EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 136 ---VRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGVSGVGGAMAVYGAFDAIC-SLAA 191
                 LL+        L    V      +                   AF+  C  L  
Sbjct: 241 KPYENCLLV--------LLN--VQ---NAKAWN----------------AFNLSCKIL-- 269

Query: 192 GRLTTGLPSITFIVSGGAIAQVVV 215
             LTT    +T  +S      + +
Sbjct: 270 --LTTRFKQVTDFLSAATTTHISL 291

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.8
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.77
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.66
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.64
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.6
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.39
2xut_A	524	Proton/peptide symporter family protein; transport	99.35
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.01
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.8
2xut_A	524	Proton/peptide symporter family protein; transport	98.73
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.71
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.1
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.93

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.80  E-value=8.6e-18  Score=157.17  Aligned_cols=287  Identities=9%  Similarity=-0.010  Sum_probs=182.9

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCC-ch
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSG-TT   80 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~-~~   80 (326)
                      +.+|+++|++.|..+++..+++.|..|          +++|++..|+.....++|.++|+.++..+...      .+ ||
T Consensus       123 ~~~~~l~G~~~~~~~~~~~~~i~~~~~----------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~------~g~w~  186 (451)
T 1pw4_A          123 FVLLFLCGWFQGMGWPPCGRTMVHWWS----------QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW------FNDWH  186 (451)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHTTCT----------TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH------TCCST
T ss_pred             HHHHHHHHHHhhhccchHHHHHHHHCC----------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------hccHH
Confidence            568999999999999999999999998          46899999999999999999999998665431      34 88


Q ss_pred             hhHHHHHHHHHHHHHH-HHHccCCcccccc---chhhh--------chhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHH
Q 020441           81 LLFIVFLGVITLGTIL-MCFLRKEEDKGEK---ETADA--------SVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYS  148 (326)
Q Consensus        81 ~~f~~~~~i~~l~~~l-~~~l~~~~~~~~~---~~~~~--------~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~  148 (326)
                      ..|.+..++.++..++ .+++|+++++.+.   ++.++        +.+++.+.++..  ..+.+++|+...+....+..
T Consensus       187 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  264 (451)
T 1pw4_A          187 AALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIF--MQYVLPNKLLWYIAIANVFV  264 (451)
T ss_dssp             TCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHH--HHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccch--HHHHHcCHHHHHHHHHHHHH
Confidence            8887766555554444 3555543322110   00000        000011111110  13456777766544333333


Q ss_pred             HHHHHHHHhhcccccccccccch--hhHHHHHHHHHHHHHHHhhhhhhccCC--CChhhHHHHHHHHHH-HHHHHHHhcc
Q 020441          149 GLQQAFVWAEFTKEIVTPALGVS--GVGGAMAVYGAFDAICSLAAGRLTTGL--PSITFIVSGGAIAQV-VVFLWILINY  223 (326)
Q Consensus       149 g~~~~f~~~~~~~~~~~~~lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~~--g~~~~i~~~g~i~~~-~~~~~~~l~~  223 (326)
                      +........ +.+.+..+..|.+  ..+....+.+++..+++++.|++.||+  ++|+ .+..+..+.. ...+.  +..
T Consensus       265 ~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~  340 (451)
T 1pw4_A          265 YLLRYGILD-WSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-ATGVFFMTLVTIATIV--YWM  340 (451)
T ss_dssp             HHHHHHHHH-HHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-HHHHHHHHHHHHHHHH--TTS
T ss_pred             HHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHH--HHH
Confidence            322211112 2223444445543  678888999999999999999999998  8885 5554544433 33222  223


Q ss_pred             cCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHH-HHHHHHHHhhhhh----HHHHHH
Q 020441          224 SVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCA-SIAVVFFIGPYIS----LQAMLI  297 (326)
Q Consensus       224 ~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~-g~~i~~~i~~~~~----~~~~~~  297 (326)
                      .++.+   .+...+..++.|++.+..++..+.+..+.+|++ +..+++.++..+.+ |.++++.+...+.    .....+
T Consensus       341 ~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  417 (451)
T 1pw4_A          341 NPAGN---PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM  417 (451)
T ss_dssp             CCTTC---HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHH
T ss_pred             hcccC---HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            22211   345666777889988888888899999999987 57789999999999 9999988877653    223334


Q ss_pred             HHHHHHHHHHHHHHHH
Q 020441          298 VMVVGICVALVGILFL  313 (326)
Q Consensus       298 ~~~~~~~~~~~~~~~~  313 (326)
                      +..++.+++.+.....
T Consensus       418 ~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          418 VMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444455555555444

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.77  E-value=1.9e-17  Score=154.42  Aligned_cols=261  Identities=9%  Similarity=0.039  Sum_probs=165.8

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHh-cCCCCC------
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVL-KDDKGG------   74 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~-~~~~~~------   74 (326)
                      +.+|+++|++.|..+++..+++.|..|          +++|++..|+......+|..+|++++..+. ......      
T Consensus       121 ~~~~~l~G~~~~~~~~~~~~~~~~~~~----------~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~  190 (438)
T 3o7q_A          121 LVGLFIIAAGLGCLETAANPFVTVLGP----------ESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLD  190 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSC----------STTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHH
T ss_pred             HHHHHHHHhhHHHhhhhHHHHHHHHcC----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence            578999999999999999999999998          568999999999999999999999987776 322100      


Q ss_pred             -------CCC------CchhhHHHHHHHHHHHHHHHHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHH
Q 020441           75 -------STS------GTTLLFIVFLGVITLGTILMCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLI  141 (326)
Q Consensus        75 -------~~~------~~~~~f~~~~~i~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll  141 (326)
                             ..+      +||..|.+..++..+..++.++.+.|++++++++.+++    .+.++.   ..+++++|+....
T Consensus       191 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~~~~  263 (438)
T 3o7q_A          191 KMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQ----GSFSAS---LSRLARIRHWRWA  263 (438)
T ss_dssp             HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSST----TSHHHH---HHHHTTCSHHHHH
T ss_pred             cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccc----cchhhh---HHHHHhChHHHHH
Confidence                   001      18877866554444444444555444333221111111    111222   2235678776654


Q ss_pred             HHHH-HHHHHHHHHHHhhccccc-ccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHH
Q 020441          142 IPLF-AYSGLQQAFVWAEFTKEI-VTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL  217 (326)
Q Consensus       142 ~p~~-~~~g~~~~f~~~~~~~~~-~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~  217 (326)
                      .... ++.+....+ ... .+.+ .++.+|.  ...+....+.+++..++.++.|++.||++||+ ++..+.++.....+
T Consensus       264 ~~~~~~~~~~~~~~-~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~-~~~~~~~~~~~~~~  340 (438)
T 3o7q_A          264 VLAQFCYVGAQTAC-WSY-LIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK-VLAAYALIAMALCL  340 (438)
T ss_dssp             HHHHHHHHHHHHHH-HHH-HHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHH-HHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHH
Confidence            4332 222222221 112 2234 4444454  36788888999999999999999999999985 65555555444332


Q ss_pred             HHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          218 WILINYSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       218 ~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      ..  .+.++      ....+..++.|++.+...+..+++..+.+|+++..+.+... ...+|.++++.+...+.
T Consensus       341 ~~--~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~g~l~  405 (438)
T 3o7q_A          341 IS--AFAGG------HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGGIVTPVMGFVS  405 (438)
T ss_dssp             HH--HHCCH------HHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHHHHHHHHHHHH
T ss_pred             HH--HHcCC------cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHHHHHHHHHHHH
Confidence            21  22232      22344457888999988899999989999977544444333 45578888777776654

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.66  E-value=4.1e-15  Score=140.77  Aligned_cols=273  Identities=12%  Similarity=0.033  Sum_probs=147.6

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCC--CCCCCCc
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDK--GGSTSGT   79 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~--~~~~~~~   79 (326)
                      +.+|+++|+|.|..++...+|++|.+|          +++||+..+........+.+++.+++.......+  ....+.|
T Consensus       130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p----------~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  199 (491)
T 4gc0_A          130 VIYRIIGGIGVGLASMLSPMYIAELAP----------AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGW  199 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSC----------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCC----------HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhh
Confidence            568999999999999999999999999          4699999998888888888888888776654322  2344668


Q ss_pred             hhhHHHHHHHHHHHHHHHHHccCCcc-----ccccchhh---h------ch----hhhhHHHHHHH--HHHHhhcchhhH
Q 020441           80 TLLFIVFLGVITLGTILMCFLRKEED-----KGEKETAD---A------SV----NFYSYLVSLSK--SITTLLADVRML  139 (326)
Q Consensus        80 ~~~f~~~~~i~~l~~~l~~~l~~~~~-----~~~~~~~~---~------~~----~~~~~~~~~~k--~~~~~~~~~~~l  139 (326)
                      |.++.+.....++..+..+++|++.+     .++++..+   +      ..    ..+....++-+  .....+..++..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (491)
T 4gc0_A          200 RYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIV  279 (491)
T ss_dssp             HHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHH
T ss_pred             HHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHH
Confidence            87665444334333333444443321     01000000   0      00    00000000000  011112223333


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHH
Q 020441          140 LIIPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFL  217 (326)
Q Consensus       140 ll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~  217 (326)
                      ......+...+........|.+.+.. ..+.  ........+.++...++.++.+.+.||+|||+ ....+.....++.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~-~~~~~~~~~~~~~~  357 (491)
T 4gc0_A          280 IGVMLSIFQQFVGINVVLYYAPEVFK-TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP-LQIIGALGMAIGMF  357 (491)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHhcchHHHH-hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcc-hhccchHHHHHHHH
Confidence            22222222111111111122221111 1222  23445567778888999999999999999995 65555544443322


Q ss_pred             HH-HhcccCCCCCcchHHHHHHHHHHh-hhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          218 WI-LINYSVTSGVLGTLYPLIMAALLG-IGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       218 ~~-~l~~~~~~~~~~~~~~~~~~~l~G-~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .. .......+    .....+...++. .....+.+..+.+.+|.||.+ |..+.+.....+.+++.++..+.+.+
T Consensus       358 ~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l  429 (491)
T 4gc0_A          358 SLGTAFYTQAP----GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMM  429 (491)
T ss_dssp             HHHHHHHTTCC----HHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHhcccc----hHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11 11112221    122222222222 223334566778899999987 67788887888888887777766654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.64  E-value=5.4e-15  Score=140.02  Aligned_cols=276  Identities=14%  Similarity=0.046  Sum_probs=155.6

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.|..+++..+++.|..|++        +++|++.++++....++|..+|+.++..+...      .+||.
T Consensus       112 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~g~~~  177 (491)
T 4aps_A          112 FGSIILIIIGTGFLKPNVSTLVGTLYDEH--------DRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA------AGYHV  177 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSSC--------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------SCHHH
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHcCcc--------cccceeeehHHHHHHHHHHHHHHHHHHHHHhh------hhHHH
Confidence            56899999999999999999999998843        23478888888888899999999988776542      46898


Q ss_pred             hHHHHHHHHHHHHHHHHHccCC-cccccc--chhhhchhhhhHHHH----------------------------------
Q 020441           82 LFIVFLGVITLGTILMCFLRKE-EDKGEK--ETADASVNFYSYLVS----------------------------------  124 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l~~~l~~~-~~~~~~--~~~~~~~~~~~~~~~----------------------------------  124 (326)
                      .|.+..++.+++.++.++.+++ .+++++  ++.+++++.++..+.                                  
T Consensus       178 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (491)
T 4aps_A          178 AFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVA  257 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHH
Confidence            8877655555555554443221 111100  000000000000000                                  


Q ss_pred             ----------HHHHHHHhhcch-hhHHHHHHHHHHHHH-HHHH-Hhhcccccccccccc--hhhHHHHHHHHHHHHHHHh
Q 020441          125 ----------LSKSITTLLADV-RMLLIIPLFAYSGLQ-QAFV-WAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSL  189 (326)
Q Consensus       125 ----------~~k~~~~~~~~~-~~lll~p~~~~~g~~-~~f~-~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~  189 (326)
                                ..++.....+++ +.....+..+..... ..+. ...+.+.+..+..+.  ...+....+.++...++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (491)
T 4aps_A          258 IAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTP  337 (491)
T ss_dssp             HHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHH
Confidence                      000000000111 111112222111111 1111 011111122222222  2455666778888889999


Q ss_pred             hhhhhccCCCChhhH----HHHHHHHHHHHHHHHHh-c-ccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccC
Q 020441          190 AAGRLTTGLPSITFI----VSGGAIAQVVVFLWILI-N-YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH  263 (326)
Q Consensus       190 ~~G~l~d~~g~~~~i----~~~g~i~~~~~~~~~~l-~-~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~  263 (326)
                      +.|++.||++||+..    +..+.++....+..... . ...+.+...++...+..++.|++.+...+..+.+..+.+|+
T Consensus       338 ~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~  417 (491)
T 4aps_A          338 FFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK  417 (491)
T ss_dssp             HHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH
Confidence            999999999887421    22444443333221111 1 10100001134566677888999999899999999999998


Q ss_pred             C-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          264 D-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       264 ~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      + +..+.+.++....+|..++..+.+.+.
T Consensus       418 ~~~g~~~g~~~~~~~~g~~i~~~~~~~~~  446 (491)
T 4aps_A          418 AFNSQMMSMWFLSSSVGSALNAQLVTLYN  446 (491)
T ss_dssp             TCSSSSTHHHHHHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7 577888999999999999999987664

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.60  E-value=8.2e-16  Score=140.61  Aligned_cols=254  Identities=14%  Similarity=0.036  Sum_probs=160.5

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +.+|+++|++.+..+++..+++.|..|          +++|++..|+.....+.+..+|+.++..+..      ..+||.
T Consensus        92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~------~~~~~~  155 (375)
T 2gfp_A           92 IAASAMQGMGTGVGGVMARTLPRDLYE----------RTQLRHANSLLNMGILVSPLLAPLIGGLLDT------MWNWRA  155 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH----------TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC------HHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHCC----------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------hccHHH
Confidence            468999999999999999999999988          4689999999999999999999999876642      246887


Q ss_pred             hHHHHHHHHHHHHHH-HHHccCCccccccchhhhchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhhcc
Q 020441           82 LFIVFLGVITLGTIL-MCFLRKEEDKGEKETADASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSGLQQAFVWAEFT  160 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g~~~~f~~~~~~  160 (326)
                      .|.+..++..+..++ .+++|+++++++++     +++.+++++       .+++|+........+..+........ +.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  222 (375)
T 2gfp_A          156 CYLFLLVLCAGVTFSMARWMPETRPVDAPR-----TRLLTSYKT-------LFGNSGFNCYLLMLIGGLAGIAAFEA-CS  222 (375)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSCCCSTTTCCC-----CCTTTCSTH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-HC
T ss_pred             HHHHHHHHHHHHHHHHHHHCcccCCCCccc-----ccHHHHHHH-------HhcCcchHHHHHHHHHHHHHHHHHHH-HH
Confidence            776554444333321 22333322211110     011122222       34455554433222222222222222 22


Q ss_pred             cccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHH-HHHHHHHHHhcc-cCCCCCcchHHHH
Q 020441          161 KEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIA-QVVVFLWILINY-SVTSGVLGTLYPL  236 (326)
Q Consensus       161 ~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~-~~~~~~~~~l~~-~~~~~~~~~~~~~  236 (326)
                      +.+..+..|.  ...+....+.+++..+++++.|++.||.+++  . ..+... ............ .+++    .+..+
T Consensus       223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  295 (375)
T 2gfp_A          223 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--M-WQSVICCLLAGLLMWIPDWFGVMN----VWTLL  295 (375)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--H-HHHHHHHHHTSSSSSHHHHHHHHH----HHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHhhhcccc----HHHHH
Confidence            2344444454  3678888899999999999999999987653  2 222222 111111000111 1111    24455


Q ss_pred             HHHHHHhhhhHHhhhhhHhhHHhhccCCchhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          237 IMAALLGIGDGVLNTQLSALLGILFKHDTEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       237 ~~~~l~G~~d~~~~~~~~~il~~~f~~~~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +..++.|++.+..++...++..+.+|+++..+.+.++..+.+|..++..+...+.
T Consensus       296 ~~~~l~g~~~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~  350 (375)
T 2gfp_A          296 VPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLP  350 (375)
T ss_dssp             HHHHHHHHHHHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6678889999999999999999999966677899999999999998888877664

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.39  E-value=6.6e-13  Score=123.49  Aligned_cols=113  Identities=8%  Similarity=0.019  Sum_probs=80.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhh
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLN  250 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~  250 (326)
                      ...++...+.++.+.++.++.|++.||++||+ ++..+..+....+..  +...++     ++...+..++.+++.+..+
T Consensus       259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-~l~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~l~~~~~~~~~  330 (417)
T 2cfq_A          259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKN-ALLLAGTIMSVRIIG--SSFATS-----ALEVVILKTLHMFEVPFLL  330 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHH--HTTCCS-----HHHHHHHTTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-HHHHHHHHHHHHHHH--HHHhcc-----HHHHHHHHHHHHHHHHHHH
Confidence            34567777888888999999999999999985 555555554443322  223333     2444555566777777777


Q ss_pred             hhhHhhHHhhccCC-chhhhhH-HHHHHHHHHHHHHHHhhhhh
Q 020441          251 TQLSALLGILFKHD-TEGAFAQ-LKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       251 ~~~~~il~~~f~~~-~~~~fa~-~~~~~~~g~~i~~~i~~~~~  291 (326)
                      +....+..+.+|++ +.++++. ++..+.+|..+++.+.+.+.
T Consensus       331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~  373 (417)
T 2cfq_A          331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY  373 (417)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH
Confidence            77788999999987 4667775 68888899988888887653

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.35  E-value=8.9e-12  Score=118.86  Aligned_cols=118  Identities=7%  Similarity=-0.018  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhc----cCCCCh---hhHHHHHHHHHHHHHHHHHh-cccCC-CCCcchHHHHHHHHHHh
Q 020441          173 VGGAMAVYGAFDAICSLAAGRLT----TGLPSI---TFIVSGGAIAQVVVFLWILI-NYSVT-SGVLGTLYPLIMAALLG  243 (326)
Q Consensus       173 ~~~~~~~~gi~~~i~~~~~G~l~----d~~g~~---~~i~~~g~i~~~~~~~~~~l-~~~~~-~~~~~~~~~~~~~~l~G  243 (326)
                      .+....+.++...+++++.+++.    ||.+++   ...+..+.++....++.... ....+ ......+...+..++.|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g  416 (524)
T 2xut_A          337 PAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLT  416 (524)
T ss_dssp             HHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHH
Confidence            44455555566677778888764    554332   11344454444433322111 10000 00011345566788899


Q ss_pred             hhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          244 IGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       244 ~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ++.+...+..+++..+..|++ +..+.+.++..+.+|..++..+.+.+
T Consensus       417 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~  464 (524)
T 2xut_A          417 FGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSV  464 (524)
T ss_dssp             HHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999976 57788888999999999888887655

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.01  E-value=2.1e-08  Score=94.47  Aligned_cols=138  Identities=15%  Similarity=0.223  Sum_probs=100.7

Q ss_pred             ccch--hhHHHHHHHHHHHHHHHhhhhhhccC-CCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhh
Q 020441          168 LGVS--GVGGAMAVYGAFDAICSLAAGRLTTG-LPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGI  244 (326)
Q Consensus       168 lg~~--~~~~~~~~~gi~~~i~~~~~G~l~d~-~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~  244 (326)
                      +|.+  +.+++..++.++..+++++.|+++|| +|||+ ++..+.++..+..+..  ...++     ++..++..++.|+
T Consensus        49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~-~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~l~g~  120 (491)
T 4aps_A           49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP-AVFWGGVLIMLGHIVL--ALPFG-----ASALFGSIILIII  120 (491)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH-HHHHHHHHHHHHHHHH--HSCCS-----TTHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHHHHH--HHhhh-----HHHHHHHHHHHHH
Confidence            5554  78899999999999999999999999 89995 7777766665544332  33333     2556777888999


Q ss_pred             hhHHhhhhhHhhHHhhccCCc---hhhhhHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHHHH
Q 020441          245 GDGVLNTQLSALLGILFKHDT---EGAFAQLKVWQCASIAVVFFIGPYIS----LQAMLIVMVVGICVALVGILFL  313 (326)
Q Consensus       245 ~d~~~~~~~~~il~~~f~~~~---~~~fa~~~~~~~~g~~i~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~~~  313 (326)
                      +.+...+...+++++.+|+++   ..+++.++...++|..+++.+...+.    .....++..+..+++.+.+...
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          121 GTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998643   44788899999999999998887664    3333344333344444444433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.97  E-value=1.2e-08  Score=94.47  Aligned_cols=120  Identities=13%  Similarity=0.060  Sum_probs=94.8

Q ss_pred             ccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHh-cccCCCCCcchHHHHHHHHHH
Q 020441          166 PALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI-NYSVTSGVLGTLYPLIMAALL  242 (326)
Q Consensus       166 ~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~l~  242 (326)
                      +.+|.  .+++++...+.++..+++++.|++.||+|||+ ++..+.++..+..+.... ...++     ++..++..++.
T Consensus        54 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~-~l~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~l~  127 (438)
T 3o7q_A           54 QAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA-GIITGLFLYALGAALFWPAAEIMN-----YTLFLVGLFII  127 (438)
T ss_dssp             HHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH-HHHHHHHHHHHHHHHHHhcccccc-----HHHHHHHHHHH
Confidence            34554  47899999999999999999999999999995 766676665544432211 23333     36677778999


Q ss_pred             hhhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          243 GIGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       243 G~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      |++.+...+..++++.+.+|++ +..+++.++...++|..+++.+...+.
T Consensus       128 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          128 AAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999976 466788999999999999999987664

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.80  E-value=7.5e-08  Score=89.36  Aligned_cols=117  Identities=9%  Similarity=0.071  Sum_probs=92.0

Q ss_pred             ccchhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHh-cc-cCCCCCcchHHHHHHHHHHhhh
Q 020441          168 LGVSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI-NY-SVTSGVLGTLYPLIMAALLGIG  245 (326)
Q Consensus       168 lg~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l-~~-~~~~~~~~~~~~~~~~~l~G~~  245 (326)
                      ++..+.+++..++.++..+++++.|+++||+|||+ ++..+.++..+..+...+ .. .++     ++..++..++.|++
T Consensus        59 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~-~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~l~G~~  132 (451)
T 1pw4_A           59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV-FLPAGLILAAAVMLFMGFVPWATSS-----IAVMFVLLFLCGWF  132 (451)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHHHHCHHHHSS-----SSHHHHHHHHHHHH
T ss_pred             ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH-HHHHHHHHHHHHHHHHHhhhhcccc-----HHHHHHHHHHHHHH
Confidence            33457889999999999999999999999999995 777776665554433222 00 233     25567778999999


Q ss_pred             hHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          246 DGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       246 d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      .+...+...+++.+.+|++ +..+++.++...++|..+++.+...+
T Consensus       133 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l  178 (451)
T 1pw4_A          133 QGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  178 (451)
T ss_dssp             HHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999965 56788899999999999998888664

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.73  E-value=1.7e-07  Score=89.09  Aligned_cols=113  Identities=11%  Similarity=0.050  Sum_probs=87.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhhhccCC-CChhhHHHHHHHHHHHHHHHHHhcccC-CCCCcchHHHHHHHHHHhhhhHH
Q 020441          171 SGVGGAMAVYGAFDAICSLAAGRLTTGL-PSITFIVSGGAIAQVVVFLWILINYSV-TSGVLGTLYPLIMAALLGIGDGV  248 (326)
Q Consensus       171 ~~~~~~~~~~gi~~~i~~~~~G~l~d~~-g~~~~i~~~g~i~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~G~~d~~  248 (326)
                      .+.+++..++.++..+++++.|+++||+ |||+ ++..+.++..+..+..  ...+ +     ++..++..++.|++.+.
T Consensus        54 ~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~-~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~l~g~~~~~  125 (524)
T 2xut_A           54 AVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN-TILWLSLIYCVGHAFL--AIFEHS-----VQGFYTGLFLIALGSGG  125 (524)
T ss_dssp             TTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-HHHHHHHHHHHHHHHH--HHTSSC-----HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHH--HHhccc-----HHHHHHHHHHHHHhccc
Confidence            3788899999999999999999999999 9995 6666665555443322  2223 3     35567778889999999


Q ss_pred             hhhhhHhhHHhhccCCc-h---hhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          249 LNTQLSALLGILFKHDT-E---GAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       249 ~~~~~~~il~~~f~~~~-~---~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      ..+...+++.+.+|+++ .   ..++.++...++|..+++.+...+.
T Consensus       126 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  172 (524)
T 2xut_A          126 IKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL  172 (524)
T ss_dssp             THHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred             cchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999998763 3   2456688999999999998887653

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.71  E-value=1.6e-07  Score=85.23  Aligned_cols=118  Identities=18%  Similarity=0.177  Sum_probs=92.3

Q ss_pred             ccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHh
Q 020441          166 PALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLG  243 (326)
Q Consensus       166 ~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G  243 (326)
                      +.+|.  .+.++...++.+...+++++.|++.||+|||+ ++..+.+......+...  ..++     ++..++..++.|
T Consensus        28 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~~--~~~~-----~~~l~~~~~l~g   99 (375)
T 2gfp_A           28 RDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRP-VILVGMSIFMLATLVAV--TTSS-----LTVLIAASAMQG   99 (375)
T ss_dssp             TTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCC-CCHHHHHHHHHHHHHHH--HHHH-----HHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-hHHHHHHHHHHHHHHHH--Hhcc-----HHHHHHHHHHHH
Confidence            34554  47889999999999999999999999999996 66666655554433222  2222     355677788999


Q ss_pred             hhhHHhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhhh
Q 020441          244 IGDGVLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       244 ~~d~~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~~  291 (326)
                      ++.+..++..++++.+.+|++ +..+++.++...++|..+++.+...+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~  148 (375)
T 2gfp_A          100 MGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD  148 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            999999999999999999855 567889999999999999999887663

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.10  E-value=2.1e-05  Score=73.77  Aligned_cols=114  Identities=11%  Similarity=-0.071  Sum_probs=80.7

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCC--------C-----CcchHHHHHH
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTS--------G-----VLGTLYPLIM  238 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~--------~-----~~~~~~~~~~  238 (326)
                      ..+++...+-++..+|++++|+++||+|||+ .+..+.++..+..+..-  +.+..        .     -......++.
T Consensus        56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~-~l~~~~~l~~i~~i~~a--~~~~~~~~~~~~~~~~~~~a~~~~~l~~~  132 (491)
T 4gc0_A           56 LLGFCVASALIGCIIGGALGGYCSNRFGRRD-SLKIAAVLFFISGVGSA--WPELGFTSINPDNTVPVYLAGYVPEFVIY  132 (491)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH-HHHHHHHHHHHHHHHHH--CTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHHH--HHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence            3456666777788999999999999999995 77666665554433211  11100        0     0013456777


Q ss_pred             HHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHHHHHHHHHHHhh
Q 020441          239 AALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCASIAVVFFIGP  288 (326)
Q Consensus       239 ~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~g~~i~~~i~~  288 (326)
                      -++.|++.+...+..+.+++|..|+++ ....+.++.....|..+++....
T Consensus       133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~  183 (491)
T 4gc0_A          133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNY  183 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcch
Confidence            899999999999999999999999774 55566788888888777777654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.93  E-value=3.8e-06  Score=77.62  Aligned_cols=78  Identities=13%  Similarity=0.051  Sum_probs=49.9

Q ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHH
Q 020441          132 LLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGA  209 (326)
Q Consensus       132 ~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~  209 (326)
                      .++||+...+....+......+.....++ .+.++.+|.  .++|.+...+.++..+++++.|+++||+|||+ ++..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~-~l~~~~   80 (417)
T 2cfq_A            3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFP-IWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK-YLLWII   80 (417)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHHHTTTHH-HHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC-HHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-HHHHHH
Confidence            56777766544332222222222222222 344444554  37899999999999999999999999999996 555554


Q ss_pred             HH
Q 020441          210 IA  211 (326)
Q Consensus       210 i~  211 (326)
                      ..
T Consensus        81 ~~   82 (417)
T 2cfq_A           81 TG   82 (417)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	326
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.71
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.43
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.85
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.49

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1.1e-15  Score=139.84  Aligned_cols=267  Identities=10%  Similarity=-0.028  Sum_probs=156.4

Q ss_pred             chhHHhhhhhhhhhhccccceecccchhhhhhcCCCcCcchhhhhHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCCchh
Q 020441            2 VPASLYLGFAASIIWVGEGTYLTAAALSHASNHKLHEGTVIGSFNGEFWGMFASHQFVGNLITLAVLKDDKGGSTSGTTL   81 (326)
Q Consensus         2 i~a~~l~G~~~g~~w~a~~~~~~~~a~~~~~~~~~~~~~~~g~~~gif~~~~~~~~iiG~li~~~~~~~~~~~~~~~~~~   81 (326)
                      +..|+++|++.|..+++...++.|..+          +++||+..|+......++..+|+++........     .+||.
T Consensus       120 ~~~~~~~g~~~~~~~~~~~~~i~~~~~----------~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~-----~~w~~  184 (447)
T d1pw4a_         120 FVLLFLCGWFQGMGWPPCGRTMVHWWS----------QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-----NDWHA  184 (447)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHTTCT----------TTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-----CCSTT
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHHH----------hhcccccccccccccchhhhhhhhhhhhHhhhh-----hcccc
Confidence            467999999999999999999999998          468999999999999999999988876554322     24776


Q ss_pred             hHHHHHHHHHHHHHH-HHHccCCccccc---cchh-----h---hchhhhhHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 020441           82 LFIVFLGVITLGTIL-MCFLRKEEDKGE---KETA-----D---ASVNFYSYLVSLSKSITTLLADVRMLLIIPLFAYSG  149 (326)
Q Consensus        82 ~f~~~~~i~~l~~~l-~~~l~~~~~~~~---~~~~-----~---~~~~~~~~~~~~~k~~~~~~~~~~~lll~p~~~~~g  149 (326)
                      .|.+...+.++..++ .+++++++++.+   +++.     +   ++.+++...++.  ...+.++++....+....+...
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  262 (447)
T d1pw4a_         185 ALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQI--FMQYVLPNKLLWYIAIANVFVY  262 (447)
T ss_dssp             CTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHH--HHHHTSSCHHHHHHHHHHHHHH
T ss_pred             cchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhH--HHHHHHcCchHHHHHHHhhhhh
Confidence            676655555444443 344444322111   0000     0   000000011111  1123456666554433322222


Q ss_pred             HHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHH-HHHHHHHhcccCC
Q 020441          150 LQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQV-VVFLWILINYSVT  226 (326)
Q Consensus       150 ~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~-~~~~~~~l~~~~~  226 (326)
                      ...... ..+.+.+..+..+.  ...+....+.++...++.++.|++.||.+|+. .......... ...........+.
T Consensus       263 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  340 (447)
T d1pw4a_         263 LLRYGI-LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN-RGATGVFFMTLVTIATIVYWMNPA  340 (447)
T ss_dssp             HHHHHH-HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC-HHHHHHHHHHHHHHHHHHTTSCCT
T ss_pred             hhhhcc-hhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc-cccccchhHHHHHHHHHHHHhccc
Confidence            211111 11122234444443  46778888899999999999999999988763 2222221111 1111111222222


Q ss_pred             CCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccCCc-hhhhhHHHHHHHHH-HHHHHHHhhhh
Q 020441          227 SGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKHDT-EGAFAQLKVWQCAS-IAVVFFIGPYI  290 (326)
Q Consensus       227 ~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~~~-~~~fa~~~~~~~~g-~~i~~~i~~~~  290 (326)
                      .   .++...+..++.|++.+...+..+....+.+|++. ..+.+..+....++ ..+++.+...+
T Consensus       341 ~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~  403 (447)
T d1pw4a_         341 G---NPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT  403 (447)
T ss_dssp             T---CHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1   13555666778888888888888999999999874 66788888777764 44456665544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=2.9e-12  Score=114.33  Aligned_cols=112  Identities=8%  Similarity=0.020  Sum_probs=84.3

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHhhhhHHhhh
Q 020441          172 GVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILINYSVTSGVLGTLYPLIMAALLGIGDGVLNT  251 (326)
Q Consensus       172 ~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~  251 (326)
                      ..+......+++..++..+.+++.||.++++ .+..+.++.....+.  +...++     .+..++..++.|++.+...+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~-~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~l~g~~~~~~~~  331 (417)
T d1pv7a_         260 VFGYVTTMGELLNASIMFFAPLIINRIGGKN-ALLLAGTIMSVRIIG--SSFATS-----ALEVVILKTLHMFEVPFLLV  331 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTHHHHHHHHCHHH-HHHHHHHHHHHHHHH--HHTCCC-----HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccccccccccchhhhhhhhccccccc-chhhhHHHHHHhhhc--cccccc-----cchhhHHHHHHHHHHHHHHH
Confidence            5566677888889999999999999999885 655555554443322  233343     35667778899999999999


Q ss_pred             hhHhhHHhhccCC-chhhhhH-HHHHHHHHHHHHHHHhhhhh
Q 020441          252 QLSALLGILFKHD-TEGAFAQ-LKVWQCASIAVVFFIGPYIS  291 (326)
Q Consensus       252 ~~~~il~~~f~~~-~~~~fa~-~~~~~~~g~~i~~~i~~~~~  291 (326)
                      ...+++.+.+|++ +..+++. +++.+++|..+++.+...+.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~  373 (417)
T d1pv7a_         332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY  373 (417)
T ss_dssp             HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999987 4667884 56778888888887776653

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=1e-08  Score=92.62  Aligned_cols=115  Identities=10%  Similarity=0.039  Sum_probs=89.0

Q ss_pred             chhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHHHHHHHHHHHHHh--cccCCCCCcchHHHHHHHHHHhhhhH
Q 020441          170 VSGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGAIAQVVVFLWILI--NYSVTSGVLGTLYPLIMAALLGIGDG  247 (326)
Q Consensus       170 ~~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~i~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~l~G~~d~  247 (326)
                      .+++|++..++.++..+++++.|+++||+|||+ ++..+.++..+..++...  ....+     ....++..++.|++.+
T Consensus        58 ~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~  131 (447)
T d1pw4a_          58 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV-FLPAGLILAAAVMLFMGFVPWATSS-----IAVMFVLLFLCGWFQG  131 (447)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHHHHHCHHHHSS-----SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-HHHHHHHHHHHHHhhccccchhhhh-----HHHHHHHHHHHHHhhh
Confidence            348899999999999999999999999999995 776776665544332111  11122     2456777888999999


Q ss_pred             HhhhhhHhhHHhhccCC-chhhhhHHHHHHHHHHHHHHHHhhhh
Q 020441          248 VLNTQLSALLGILFKHD-TEGAFAQLKVWQCASIAVVFFIGPYI  290 (326)
Q Consensus       248 ~~~~~~~~il~~~f~~~-~~~~fa~~~~~~~~g~~i~~~i~~~~  290 (326)
                      ...+....++++.+|++ +..+++.++...++|..+++.+....
T Consensus       132 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~  175 (447)
T d1pw4a_         132 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG  175 (447)
T ss_dssp             HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhH
Confidence            99999999999999876 56788899999999988888776544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=2.4e-07  Score=81.50  Aligned_cols=154  Identities=14%  Similarity=0.089  Sum_probs=86.1

Q ss_pred             hhcchhhHHHHHHHHHHHHHHHHHHhhcccccccccccc--hhhHHHHHHHHHHHHHHHhhhhhhccCCCChhhHHHHHH
Q 020441          132 LLADVRMLLIIPLFAYSGLQQAFVWAEFTKEIVTPALGV--SGVGGAMAVYGAFDAICSLAAGRLTTGLPSITFIVSGGA  209 (326)
Q Consensus       132 ~~~~~~~lll~p~~~~~g~~~~f~~~~~~~~~~~~~lg~--~~~~~~~~~~gi~~~i~~~~~G~l~d~~g~~~~i~~~g~  209 (326)
                      .+|||+...+....+...+..+.+...++ .+.++.+|.  .++|++..++.+...+++++.|+++||+|||+ ++..+.
T Consensus         3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~-~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~-~l~~~~   80 (417)
T d1pv7a_           3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFP-IWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK-YLLWII   80 (417)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCT-HHHHHH
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-HHHHHH
Confidence            45677777766555655555555544443 244455554  48899999999999999999999999999996 555554


Q ss_pred             HHHHHHHHHHHhc-ccCCCCCcchHHHHHHHHHHhhhhHHhhhhhHhhHHhhccC-Cc--hhhhhHHHHHHHHHHHHHHH
Q 020441          210 IAQVVVFLWILIN-YSVTSGVLGTLYPLIMAALLGIGDGVLNTQLSALLGILFKH-DT--EGAFAQLKVWQCASIAVVFF  285 (326)
Q Consensus       210 i~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~~~il~~~f~~-~~--~~~fa~~~~~~~~g~~i~~~  285 (326)
                      ............. ..+..    ....++.....+...+..............++ ++  ..+.+......+.+..+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (417)
T d1pv7a_          81 TGMLVMFAPFFIFIFGPLL----QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGAS  156 (417)
T ss_dssp             HHHHHTHHHHHHHTHHHHH----HTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhH----HHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccc
Confidence            4443332221111 11100    01123333333444443333333333333322 22  22455666677777777777


Q ss_pred             Hhhhhh
Q 020441          286 IGPYIS  291 (326)
Q Consensus       286 i~~~~~  291 (326)
                      +...+.
T Consensus       157 ~~~~l~  162 (417)
T d1pv7a_         157 IVGIMF  162 (417)
T ss_dssp             HHHHHH
T ss_pred             cccccc
Confidence            766553